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2013
Carvalho A, Ribeiro H, Mayes R, Guedes A, Abreu I, Noronha F, Dawson LA.  2013.  Organic matter characterization of sediments in two river beaches from Northern Portugal for forensic application. Forensic Science International. 233:403-415.
Alday JG, Cox ES, Pakeman RJ, Harris MP, Le Duc MG, Marrs RH.  2013.  Overcoming resistance and resilience of an invaded community is necessary for effective restoration: a multi-site bracken control study. Journal of Applied Ecology. 50:156-167.
Arnold MFF, Haag AF, Capewell S, Boshoff HI, James EK, McDonald R, Mair I, Mitchell AM, Kerscher B, Mitchell TJ et al..  2013.  Partial complementation of Sinorhizobium meliloti bacA mutant phenotypes by the Mycobacterium tuberculosis BacA protein. Journal of Bacteriology. 195:389-398.
Chianini F, Siso S, Ricci E, Eaton SL, Finlayson J, Pang Y, Hamilton S, Steele P, Reid HW, Cantile C et al..  2013.  Pathogenesis of scrapie in ARQ/ARQ sheep after subcutaneous infection: Effect of lymphadenectomy and immune cell subset changes in relation to prion protein accumulation. Veterinary Immunology and Immunopathology. 152:348-358.
Hombach-Klonisch S, Danescu A, Begum F, Amezaga MR, Rhind SM, Sharpe RM, Evans NP, Bellingham M, Cotinot C, Mandon-Pepin B et al..  2013.  Peri-conceptional changes in maternal exposure to sewage sludge chemicals disturbs fetal thyroid gland development in sheep. Molecular and Cellular Endocrinology. 367:98-108.
Canton GJ, Katzer F, Benavides-Silvan J, Maley SW, Palarea-Albaladejo J, Pang Y, Smith S, Bartley PM, Rocchi M, Innes EA et al..  2013.  Phenotypic characterisation of the cellular immune infiltrate in placentas of cattle following experimental inoculation with Neospora caninum in late gestation. Veterinary Research. 44
Dahlawi H, Jordan-Mahy N, Clench M, McDougall GJ, Le Maitre CL.  2013.  Polyphenols are responsible for the pro-apoptotic properties of pemegranate juice on leukemia cell lines. Food Science & Nutrition. 1:196-208.
Czachor H, Hallett PD, Lichner L, Jozefaciuk G.  2013.  Pore shape and organic compounds drive major changes in the hydrological characteristics of agricultural soils. European Journal of Soil Science. 64:334-344.
Aitkenhead MJ, Coull MC, Towers W, Hudson G.  2013.  Prediction of soil characteristics and colour using data from the National Soils Inventory of Scotland. Geoderma. 200-201:99-107.
Chavarria-Krauser A, Dupuy L, Ptashnyk M.  2013.  Preface. Mathematical Modelling of Natural Phenoma. 8:1-4.
Mansour E, Casas AM, Gracia MP, Molina-Cano JL, Moralejo M, Cattivelli L, Thomas WTB, Igartua E.  2013.  Quantitative trait loci for agronomic traits in an elite barley population for Mediterranean conditions. Molecular Breeding. 33:249-265.
McGeoch SC, Johnstone AM, Lobley GE, Adamson J, Hickson K, Holtrop G, Fyfe C, Clark LF, Pearson DWM, Abraham P et al..  2013.  A randomized crossover study to assess the effect of an oat-rich diet on glycaemic control, plasma lipids and postprandial glycaemia, inflammation and oxidative stress in Type 2 diabetes. Diabetic Medicine. 30:1314-1323.
Kildea S, Quinn L, Mehenni-Ciz J, Cooke DEL, Perez FM, Deahl KL, Griffin D, Cooke LR.  2013.  Re-emergence of the Ib mitochondrial haplotype within the British and Irish Phytophthora infestans populations. European Journal of Plant Pathology. 135:237-242.
Critchley CNR, Mitchell RJ, Rose RJ, Griffiths JB, Jackson E, Scott H, Davies OD.  2013.  Re-establishment of Calluna vulgaris (L.) Hull in an eight-year grazing experiment on upland acid grassland. Journal of Nature Conservation. 21:22-30.
Hunter LJR, Westwood JH, Heath G, Macaulay K, Smith AG, MacFarlane SA, Palukaitis P, Carr JP.  2013.  Regulation of RNA-dependent RNA polymerase 1 and isochorismate synthase gene expression in arabidopsis. PLoS ONE. 8:e66530.
Coutinho BG, Mitter B, Talbi C, Sessitsch A, Bedmar E, Halliday N, James EK, Camara M, Venturi V.  2013.  Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. Applied and Environmental Microbiology. 79:4421-4432.
Tilsner J, Linnik O, Louveaux M, Roberts IM, Chapman SN, Oparka KJ.  2013.  Replication and trafficking of a plant virus are coupled at the entrances of plasmodesmata. Journal of Cell Biology. 201:981-995.
Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, MacLean D, Cock PJ, Leggett RM, Bryan GJ et al..  2013.  Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. Plant Journal. 76:530-544.
Pasare SA, Ducreux LJM, Morris WL, Campbell R, Sharma SK, Roumeliotis E, Kohlen W, van der Krol S, Bramley PM, Roberts AG et al..  2013.  The role of the potato (Solanum tuberosum L.) CCD8 gene in stolon and tuber development. New Phytologist. 198:1108-1120.
Rhind SM, Kyle CE, Ruffie H, Calmettes E, Osprey M, Zhang ZL, Hamilton D, McKenzie C.  2013.  Short and long term temporal changes in soil concentrations of selected endocrine disrupting compounds (EDCs) following single or multiple applications of sewage sludge to pastures. Environmental Pollution. 181:262-270.
Podevin N, Davies HV, Hartung F, Nogue F, Casacuberta JM.  2013.  Site-directed nucleases, a paradigm shift in predictable, knowledge-based plant breeding. Trends in Biotechnology. 31:373-383.
Cheke RA, Adranyi E, Cox JR, Farman DI, Magoma RN, Mbereki C, McWilliam AN, Mtobesya BN, van der Walte E.  2013.  Soil contamination and persistence of pollutants following organophosphate sprays and explosions to control red-billed quelea (Quelea quelea). Pest Management Science. 69:386-396.
Salmela MJ, Cavers S, Cottrell JE, Iason GR, Ennos RA.  2013.  Spring phenology shows genetic variation among and within populations in seedlings of Scots pine (Pinus sylvestris L.) in the Scotish Highlands. Plant Ecology and Diversity. 6:523-536.
Bragard C, Caciagli P, Lemaire O, Lopez-Moya JJ, MacFarlane S, Peters D, Susi P, Torrance L.  2013.  Status and prospects of plant virus control through interference with vector transmission. Annual Review of Phytopathology, 51,177-201.. 51:177-201.
Tondelli A, Xu X, Moragues M, Sharma R, Schnaithmann F, Ingvardsen C, Manninen O, Comadran J, Russell J, Waugh R et al..  2013.  Structural and temporal variation in genetic diversity of European spring two-row barley cultivars and association mapping of quantitative traits. Plant Genome. 6
Pasare S, Wright K, Campbell R, Morris WL, Ducreux LJM, Chapman S, Bramley PM, Fraser PD, Roberts AG, Taylor MA.  2013.  The sub-cellular localisation of the potato (Solanum tuberosum L.) carotenoid biosynthetic enzymes, CrtRb2 and PSY2. Protoplasma. 250:1381-1392.
O'Malley-James JT, Greaves JS, Raven JA, Cockell CS.  2013.  Swansong biospheres: refuges for life and novel microbial biospheres on terrestrial planets near the end of their habitable lifetimes. International Journal of Astrobiology. 12:99-112.
Sargent F, Davidson FA, Kelly CL, Binny R, Christodoulides N, Gibson D, Johansson E, Kozyrska K, Lado LL, MacCallum J et al..  2013.  A synthetic system for expression of components of a bacterial microcompartment. Microbiology-SGM. 159:2427-2436.
Koljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AFS, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM et al..  2013.  Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology. 22:5271-5277.
Duc C, Sherstnev A, Cole C, Barton GJ, Simpson GG.  2013.  Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA. PLoS Genetics. 9:e1003867.
Babikova Z, Gilbert L, Bruce TJA, Birkett M, Caulfield JC, Woodcock C, Pickett JA, Johnson D.  2013.  Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack. Ecology Letters. 16:835-843.
Milne I, Stephen G, Bayer MM, Cock PJA, Pritchard L, Cardle L, Shaw P, Marshall DF.  2013.  Using Tablet for visual exploration of second generation sequencing data. Briefings in Bioinformatics. 14:193-202.
Van Kuren AT, Boag B, Hruban E, Cattadori IM.  2013.  Variability in the intensity of nematode larvae from gastrointestinal tissues of a natural herbivore. Parasitology. 140:632-640.
Houston K, McKim S, Comadran J, Bonar N, Druka I, Uzrek E, Cirillo E, Guzy-Wrobelska J, Collins N, Halpin C et al..  2013.  Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence. Proceedings of the National Academy of Sciences of the USA. 110:16675-16680.
Haggarty P, Campbell DM, Knox S, Horgan GW, Hoad G, Boulton E, McNeill G, Wallace AM.  2013.  Vitamin D in pregnancy at high latitude in Scotland. British Journal of Nutrition. 109:898-905.
Koichi K, Cottrell A, Sangha KK, Gordon IJ.  2013.  What determines the acceptability of wildlife control methods? A case of feral pig management in the wet tropics world heritage area, Australia Human Dimensions of Wildlife. 18:97-108.
Dawson IK, Guariguata MR, Loo J, Weber JC, Lengkeek A, Bush D, Cornelius J, Guarino L, Kindt R, Orwa C et al..  2013.  What is the relevance of smallholders' agroforestry systems for conserving tropical tree species and genetic diversity in circa situm, in situ and ex situ settings? A review Biodiversity and Conservation. 22:301-324.
2012
Koichi K, Mayer R, Kaur K, Cottrell AA, Gordon IJ.  2012.  Aboriginal rangers' perspectives on feral pigs: are they a pest or a resource? A case study in the wet tropics world heritage area of Northern Queensland Journal of Australian Indigenous Issues. 15:2-19.
Johnson SN, Clark KE, Hartley SE, Jones TH, McKenzie SW, Koricheva J.  2012.  Aboveground-belowground herbivore interactions: a meta-analysis. Ecology. 93:2208-2215.
Catterall S, Cook AR, Marion G, Butler A, Hulme PE.  2012.  Accounting for uncertainty in colonisation times: a novel approach to modelling the spatio-temporal dynamics of alien invasions using distribution data. Ecography. 35:901-911.
Santos PM, Thornton B, Corsi M.  2012.  Adaptation of the C-4 grass panicum maximum to defoliation is related to plasticity of N uptake, mobilisation and allocation patterns. Scientia Agricola. 69:293-299.
Cammarano D, Payero J, Basso B, Stefanova L, Grace P.  2012.  Adapting wheat sowing dates to projected climate change in the Australian sub-tropics: analysis of crop water use and yield. Crop and Pasture Science.
Rodriguez-Gutierrez G, Duthie GG, Wood S, Morrice P, Nicol F, Reid M, Cantlay LL, Kelder T, Horgan GW, Fernandez-Bolanos Guzman J et al..  2012.  Alperujo extract, hydroxytyrosol, and 3,4-dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin e-deficient ratsua proteomics and network analysis approach. Molecular Nutrition and Food Research. 56:1131-1147.
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol JW et al..  2012.  Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Research. 40:2454-2469.
De Smet I, White PJ, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F et al..  2012.  Analyzing lateral root development: how to move forward. The Plant Cell. 24:15-20.
Koichi K, Cottrell A, Sangha KK, Gordon IJ.  2012.  Are feral pigs (Sus scrofa) a pest to rainforest tourism? Journal of Ecotourism. 11:132-148.
Ascher J, Sartori G, Graefe U, Thornton B, Ceccherini MT, Pietramellara G, Egli M.  2012.  Are humus forms, mesofauna and microflora in subalpine forest soils sensitive to thermal conditions? Biology and Fertility of Soils. 48:709-725.
Talevich E, Invergo BM, Cock PJA, Chapman BA.  2012.  Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biophyton. BMC Bioinformatics. 13:209.
Chen WM, Prell J, James EK, Sheu D, Sheu S.  2012.  Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica. Microbiology. 158:1758-1766.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, James EK, Sprent JI, Young JPW, Chen WM.  2012.  Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
Love AJ, Geri C, Laird J, Carr C, Yun BW, Loake GJ, Tada Y, Sadanandom A, Milner JJ.  2012.  Cauliflower mosaic virus protein P6 inhibits signaling responses to salicylic acid and regulates innate immunity. PLoS One. 7:e47535.
Flynn KJ, Blackford JC, Baird ME, Raven JA, Clark DR, Beardall J, Brownlee C, Fabian H, Wheeler GL.  2012.  Changes in pH at the exterior surface of plankton with ocean acidification. Nature Climate Change. 2:510-513.
Newton AC, Torrance L, Holden N, Toth IK, Cooke DEL, Blok VC, Gilroy EM.  2012.  Chapter three - climate change and defence against pathogens in plants. Advances in Applied Microbiology. 81:89-132.
Brittain SR, Cox AG, Tomos AD, Paterson E, Siripinyanond A, McLeod CW.  2012.  Chemical speciation studies on DU contaminated soils using flow field flow fractionation linked to inductively coupled plasma mass spectrometry (FIFFF-ICP-MS). Journal of Environmental Monitoring. 14:782-790.
Limmer D, Kohler C, Hillier S, Moreton S, Tabrez A, Clift P.  2012.  Chemical weathering and provenance evolution of Holocene-Recent sediments from the Western Indus Shelf, Northern Arabian Sea inferred from physical and mineralogical properties. Marine Geology. 326-328:101-115.
Alizai A, Hillier S, Clift PD, Giosan L, Hurst A, VanLaningham S, Macklin M.  2012.  Clay mineral variations in holocene terrestrial sediments from the Indus Basin. Quaternary Research. 77:368-381.
Toorop PE, Cuerva RC, Begg GS, Locardi B, Wishart J, Squire GR, Iannetta PPM.  2012.  Co-adaptation of seed dormancy and flowering time in the arable weed Capsella bursa-pastoris (shepherd's purse). Annals of Botany. 109:481-489.
Sutherland WJ, Bellingan L, Bellingham JR, Blackstock JJ, Bloomfield RM, Bravo M, Cadman VM, Cleevely DD, Clements A, Cohen AS et al..  2012.  A collaboratively-derived science-policy research agenda. PloS ONE. 7:e31824.
Fridley JD, Grime JP, Huston MA, Pierce S, Smart SM, Thompson K, Boerger L, Brooker RW, Cerabolini BEL, Gross N et al..  2012.  Comment on "Productivity Is a Poor Predictor of Plant Species Richness". Science. 335:1441.
Suarez-Moreno ZR, Caballero-Mellado J, Coutinho BG, Mendonca-Previato L, James EK, Venturi V.  2012.  Common features of environmental and potentially beneficial plant-associated Burkholderia. Microbial Ecology. 63:249-266.
Palomares-Rius JE, Hedley PE, Cock PJA, Morris JA, Jones JT, Vovlas N, Blok V.  2012.  Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. Molecular Plant Pathology. 13:1120-1134.
Cognat C, Shepherd T, Verrall SR, Stewart D.  2012.  Comparison of two headspace sampling techniques for the analysis of off-flavour volatiles from oat based products. Food Chemistry. 134:1592-1600.
Langkilde S, Schroder M, Frank T, Shepherd LVT, Conner S, Davies HV, Meyer O, Danier J, Rychlik M, Belknap WR et al..  2012.  Compositional and toxicological analysis of a GM potato line with reduced alpha-solanine content - A 90-day feeding study in the Syrian Golden hamster. Food and Chemical Toxicology. 64:177-185.
Jackson-Blake LA, Helliwell RC, Britton A, Gibbs S, Coull MC, Dawson LA.  2012.  Controls on soil solution nitrogen along an altitudinal gradient in the Scottish uplands. Science of the Total Environment. 431:100-108.
Hu D, Boning P, Kohler CM, Hillier S, Pressling N, Wan S, Brumsack HJ, Clift PD.  2012.  Deep sea records of the continental weathering and erosion response to East Asian monsoon intensification since 14ka in the South China Sea. Chemical Geology. 326-327:1-18.
Ojea E, Martin-Ortega J, Chiabai A.  2012.  Defining and classifying ecosystem services for economic valuation: the case of forest water services. Environmental Science and Policy. 19-20:1-15.
Carlsson AM, Wilson K, Irvine RJ.  2012.  Development and application of a delayed-release anthelmintic intra-ruminal bolus system for experimental manipulation of nematode worm burdens. Parasitology. 139:1086-1092.
Lees AK, Sullivan L, Lynott JS, Cullen DW.  2012.  Development of a quantitative real-time PCR assay for Phytophthora infestans and its applicability to leaf, tuber and soil samples. Plant Pathology. 61:867-876.
Broadley MR, Chilimba ADC, Joy EJM, Young SD, Black CR, Ander EL, Watts MJ, Hurst R, Fairweather-Tait SJ, White PJ et al..  2012.  Dietary requirements for magnesium but not calcium are likely to be met in Malawi based on national food supply data. International Journal for Vitamin and Nutrition Research. 82:192-199.
Gromov AV, Gray N, Szilagyi PA, Campbell EEB.  2012.  Direct grafting of carbon nanotubes with ethylenediamine. Journal of Materials Chemistry. 22:21242-21248.
Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG.  2012.  Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation. Nature Structural and Molecular Biology. 19:845-852.
Carlsson AM, Irvine RJ, Wilson K, Piertney SB, Halvorsen O, Coulson SJ, Stien A, Albon SD.  2012.  Disease transmission in an extreme environment: Nematode parasites infect reindeer during the Arctic winter. International Journal for Parasitology. 42:789-795.
Lockyer AE, Emery AM, Kane RA, Walker AJ, Mayer CD, Mitta G, Coustau C, Adema CM, Hanelt B, Rollinson D et al..  2012.  Early differential gene expression in haemocytes from resistant and susceptible biomphalaria glabrata strains in response to schistosoma mansoni. PLoS ONE, e511020. 7
Lees AK, Stewart JA, Lynott JS, Carnegie SF, Campbell H, Roberts AMI.  2012.  The effect of a dominant Phytopthora infestans genotype (13_A2) in Great Britain on host resistance to foliar late blight in commercial potato cultivars. Potato Research. 55:125-134.
Chen W, Prell J, James EK, Sheu D, Sheu S.  2012.  Effect of phosphoglycerate mutase and fructose 1,6-bisphosphatase deficiency on free-living and symbiotic Burkholderia phymatum. Microbiology-SGM. 158:1127-1136.
Clark KE, Hartley SE, Brennan RM, Jennings SN, McMenemy LS, McNicol JW, Mitchell C, Johnson SN.  2012.  Effects of cultivar and egg density on a colonizing vine weevil (Otiorhynchus sulcatus) population and its impacts on red raspberry growth and yield. Crop Protection. 32:76-82.
Bellingham M, Fiandanese N, Byers A, Cotinot C, Evans NP, Pocar P, Amezaga MR, Lea RG, Sinclair KD, Rhind SM et al..  2012.  Effects of exposure to environmental chemicals during pregnancy on the development of the male and female reproductive axes. Reproduction in Domestic Animals. 47:15-22.
Wilson FA, Holtrop G, Calder AG, Anderson SE, Lobley GE, Rees WD.  2012.  Effects of methyl-deficient diets on methionine and homocysteine metabolism in the pregnant rat. American Journal of Physiology - Endocrinology and Metabolism. 302:E1531-E1540.
Cheke RA, McWilliam AN, Mbereki C, van der Walt E, Mtobesya B, Magoma RN, Young S, Eberly JP.  2012.  Effects of the organophosphate fenthion for control of the red-billed quelea Quelea quelea on cholinesterase and haemoglobin concentrations in the blood of target and non-target birds. Ecotoxicology. 21:1761-1770.
Edwards AC, Coull MC, Sinclair AH, Walker RL, Watson CA.  2012.  Elemental status (Cu, Mo, Co, B, S, and Zn) of Scottish agricultural soils compared with a soil-based risk assessment. Soil Use and Management. 28:167-176.
Raven JA, Crawfurd K.  2012.  Environmental controls on coccolithophore calcification. Marine Ecology Progress Series. 470:137-166.
Yelina NE, Choi K, Chelysheva L, Macaulay M, de Snoo B, Wijnker E, Miller N, Drouaud J, Grelon M, Copenhaver GP et al..  2012.  Epigenetic remodeling of meiotic crossover frequency in arabidopsis thaliana DNA methyltransferase mutants. PLoS Genetics. 8:e1002844.
Minet E, Coxon CE, Goodhue R, Richards KG, Kalin RM, Meier-Augenstein W.  2012.  Evaluating the utility of N-15 and O-18 isotope abundance analyses to identify nitrate sources: a soil zone study. Water Research. 46:3723-3736.
Schultz L, Cogan NOI, McLean K, Dale MFB, Bryan GJ, Forster JW, Slater AT.  2012.  Evaluation and implementation of a potential diagnostic molecular marker for H1-conferred potato cyst nematode resistance in potato (Solanum tuberosum L.). Plant Breeding. 131:315-321.
Ferreira LMM, Celaya R, Santos AS, Guedes CMV, Rodrigues MAM, Mayes RW, Osoro K.  2012.  Evaluation of long-chain alcohols as diet composition markers in goats grazing heathland areas. Animal. 6:683-0692.
Mitchell RJ, Hester AJ, Campbell CD, Chapman SJ, Cameron CM, Hewison RL, Potts JM.  2012.  Explaining the variation in the soil microbial community: do vegetation composition and soil chemistry explain the same or different parts of the microbial variation? Plant and Soil. 351:355-362.
Semashko MA, Gonzalez I, Shaw J, Leonova OG, Popenko VI, Taliansky ME, Canto T, Kalinina N.  2012.  The extreme N-terminal domain of a hordeivirus TGB1 movement protein mediates its localization to the nucleolus and interaction with fibrillarin. Biochemie. 94:1180-1188.
Bellingham M, McKinnell C, Fowler PA, Amezaga MR, Zhang Z, Rhind SM, Cotinot C, Mandon-Pepin B, Evans NP, Sharpe RM.  2012.  Foetal and post-natal exposure of sheep to sewage sludge chemicals disrupts sperm production in adulthood in a subset of animals. International Journal of Andrology. 35:317-329.
Evans DM, Barnard P, Koh LP, Chapman CA, Altwegg R, Garner TWJ, Gompper ME, Gordon IJ, Katzner PTEN.  2012.  Funding nature conservation: who pays? Animal Conservation. 15:215-216.
Farre A, Cuadrado A, Lacasa-Benito I, Cistue L, Schubert I, Comadran J, Jansen J, Romagosa I.  2012.  Genetic characterization of a reciprocal translocation present in a widely grown barley variety. Molecular Breeding. 30:1109-1119.
McNally RR, Toth IK, Cock PJA, Pritchard L, Hedley PE, Morris JA, Zhao YF, Sundin GW.  2012.  Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. Molecular Plant Pathology. 13:160-173.
Jing R, Ambrose MA, Knox MR, Smykal P, Hybl M, Ramos A, Caminero C, Burstin J, Duc G, van Soest LJM et al..  2012.  Genetic diversity in European Pisum germplasm collections. Theoretical and Applied Genetics. 125:367-380.
Pelser PB, Abbott RJ, Comes HP, Milton JJ, Moller M, Looseley ME, Cron GV, Barcelona JF, Kennedy AH, Watson LE et al..  2012.  The genetic ghost of an invasion past: colonization and extinction revealed by historical hybridisation in Senecio. Molecular Ecology. 21:369-387.
Cooke DEL, Cano LM, Raffaele S, Bain RA, Cooke LR, Etherington GJ, Deahl KL, Farrer RA, Gilroy EM, Goss EM et al..  2012.  Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathogens. 8:e1002940.
Lamour KH, Mudge J, Gobena D, Hurtado-Gonzales OP, Schmutz J, Kuo A, Miller NA, Rice BJ, Raffaele S, Cano LM et al..  2012.  Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen phytophthora capsici. Molecular Plant-Microbe Interactions. 25:1350-1360.
Rio-Alvarez I, Rodriguez-Herva JJ, Cuartas-Lanza R, Toth IK, Pritchard L, Rodriguez-Palenzuela P, Lopez-Solanilla E.  2012.  Genome-wide analysis of the response of Dickeya dadantii 3937 to plant antimicrobial peptides. Molecular Plant-Microbe Interactions. 25:523-533.
Wang M, Jiang N, Jia T, Leach L, Cockram J, Waugh R, Ramsay L, Thomas WTB, Luo Z.  2012.  Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars. Theoretical and Applied Genetics. 124:233-246.
Wang DP, Qi MS, Calla B, Korban SS, Clough SJ, Cock PJA, Sundin GW, Toth IK, Zhao YF.  2012.  Genome-wide identification of genes regulated by the Rcs phosphorelay system in Erwinia amylovora. Molecular Plant-Microbe Interactions. 25:6-17.
Theobold CM, Chatterjee A, Horgan GW.  2012.  A hierarchical Bayesian mixture model for repeated dietary records. Food and Chemical Toxicology. 50:320-327.
Benavides J, Katzer F, Maley SW, Bartley PM, Canton G, Palarea-Albaladejo J, Purslow CA, Pang Y, Rocchi MS, Chianini F et al..  2012.  High rate of transplacental infection and transmission of Neospora caninum following experimental challenge of cattle at day 210 of gestation. Veterinary Research. 43:83.
Saunders DGO, Breen S, Win J, Schornack S, Hein I, Bozkurt TO, Champouret N, Vleeshouwers GAA, Birch PRJ, Gilroy EM et al..  2012.  Host protein BSL1 associates with phytophthora infestans RXLR effector AVR2 and the solanum demissum immune receptor R2 to mediate disease resistance. The Plant Cell. 24:3420-3434.
Clark EL, Daniell TJ, Wishart J, Hubbard SF, Karley AJ.  2012.  How conserved are the bacterial communities associated with aphids? A detailed assessment of the cabbage aphid (Brevicoryne brassicae) using 16S rDNA Environmental Entomology. 41:1386-1397.
Sausse C, Colbach N, Young MW, Squire GR.  2012.  How to manage the impact of gene flow on oilseed rape grain quality? Simulation case studies of three contrasted landscapes European Journal of Agronomy. 38:32-42.
van Dijk JP, Cankar K, Hendriksen PJM, Beenen HGJ, Zhu M, Scheffer S, Shepherd LVT, Stewart D, Davies HV, Leifert C et al..  2012.  The identification and interpretation of differences in the transcriptomes of organically and conventionally grown potato tubers. Journal of Agricultural and Food Chemistry. 60:2090-2101.
Jupe F, Pritchard L, Etherington G, MacKenzie K, Cock PJA, Wright F, Sharma SK, Bolser D, Bryan GJ, Jones J et al..  2012.  Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics. 13:1-14.
Pathak AK, Pelensky C, Boag B, Cattadori IM.  2012.  Immuno-epidemiology of chronic bacteria-helminth co-infections: observations from the field and evidence from the laboratory. International Journal of Parasitology. 42:647-655.
Cooksley SL, Brewer MJ, Donnelly D, Spezia L, Tree A.  2012.  Impacts of artificial structures on the freshwater pearl mussel Margaritifera margaritifera in the River Dee, Scotland. Aquatic Conservation: Marine and Freshwater Ecosystems. 22:318-330.
Phoenix GK, Emmett BBAAJ, Caporn SJM, Dise NB, Helliwell RC, Jones L, Leake JR, Leith ID, Sheppard LJ, Sowerby A et al..  2012.  Impacts of atmospheric nitrogen deposition: responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments. Global Change Biology. 18:1197-1215.
Purse BV, Falconer D, Sullivan MJ, Carpenter S, Mellor PS, Piertney SB, Mordue AJ, Albon SD, Gunn GJ, Blackwell A.  2012.  Impacts of climate, host and landscape factors on Culicoides species in Scotland. Medical and Veterinary Entomology. 26:168-177.
Addy S, Cooksley SL, Sime I.  2012.  Impacts of flow regulation on freshwater pearl mussel (Margaritifera margaritifera) habitat in a Scottish montane river. Science of the Total Environment. 432:318-328.
O'Gorman EJ, Pichler DE, Adams G, Benstead JP, Cohen H, Craig N, Cross WF, Demars BOL, Friberg N, Gisalon GM et al..  2012.  Impacts of warming on the structure and functioning of aquatic communities: individual- to ecosystem-level responses. Chapter 2. Advances in Ecological Research. 47:81-176.
Daniell TJ, Davidson J, Alexander CJ, Caul S, Roberts D.  2012.  Improved real-time PCR estimation of gene copy number in soil extracts using an artificial reference. Journal of Microbiological Methods. 91:38-44.
Love AJ, Chapman SN, Matic S, Noris E, Lomonossoff GP, Taliansky ME.  2012.  In planta production of a candidate vaccine against bovine papillomavirus type 1. Planta. 236:1305-1313.
Zakri AM, Ziegler A, Commandeur U, Fischer R, Torrance L.  2012.  In vivo expression and binding activity of scFv-RWAV, which recognises the coat protein of tomato leaf curl New Delhi virus (family Geminivirdae). Archives of Virology. 157:1291-1299.
Craig T, Conniff A, Galan-Diaz C.  2012.  The influences of actual and perceived familiarity on environmental preferences for the design of a proposed urban square. Urban Studies Research, Article id 767048, 9pp..
Leonardi G, Vahter M, Clemens F, Goessler W, Gurzau E, Hemminiki K, Hough RL, Koppova K, Kumar R, Rudnai P et al..  2012.  Inorganic arsenic and basal cell carcinoma in areas of Hungary, Romania, and Slovakia: A case-control study. Environmental Health Perspectives. 120:721-726.
Balana BB, Lago M, Baggaley N, Castellazzi M, Sample J, Stutter M, Slee B, Vinten AJA.  2012.  Integrating economic and biophysical data in assessing cost-effectiveness of buffer strip placement. Journal of Environmental Quality. 41:380-388.
Clark KE, Hartley SE, Brennan RM, MacKenzie K, Johnson SN.  2012.  Investigating preference-performance relationships in aboveground-belowground life cycles: a laboratory and field study with the vine weevil (Otiorhynchus sulcatus). Bulletin of Entomological Research. 102:63-70.
Oduse KA, Cullen DW.  2012.  An investigation into the fruit firmness properties of some progeny and cultivars of red raspberry (Rubus idaeus). IOSR Journal of Environmental Science, Toxicology and Food Technology. 1:4-12.
Lapierre H, Holtrop G, Calder AG, Renaud J, Lobley GE.  2012.  Is D-methionine bioavailable to the dairy cow? Journal of Dairy Science. 95:353-362.
Campbell CD, Lilly A, Towers W, Chapman SJ, Werritty A, Hanley N.  2012.  Land use and a low-carbon society. Earth and Environmental Science Transactions of the Royal Society of Edinburgh, 103, 165-173..
van der Zee R, Pisa L, Andonov S, Brodschneider R, Charriere JD, Chlebo R, Coffey MF, Crailsheim K, Dahle B, Gajde A et al..  2012.  Managed honey bee colony losses in Canada, China, Europe, Israel and Turkey, for the winters of 2008-9 and 2009-10. Journal of Agricultural Research. 51:91-114.
Carpenter D, Sherlock E, Jones DT, Chiminoides J, Writer T, Neilson R, Boag B, Keith AM, Eggleton P.  2012.  Mapping of earthworm distribution for the British Isles and Eire highlights the under-recording of an ecologically important group. Biodiversity and Conservation. 21:475-485.
Cortada L, Mantelin S, Verdejo-Lucas S, Kaloshian I.  2012.  Marker analysis for detection of the Mi-1.2 resistance gene in tomato hybrid rootstocks and cultivars. Nematology. 14:631-642.
Ward Thompson C, Roe J, Aspinall P, Mitchell R, Clow A, Miller DR.  2012.  More green space is linked to less stress in deprived communities: evidence from salivary cortisol patterns. Landscape and Urban Planning. 105:221-229.
Semashko MA, Rakitina DV, Gonzalez I, Canto T, Kalinina N, Taliansky ME.  2012.  Movement protein of hordeivirus interacts in vitro and in vivo with coilin, a major structural protein of Cajal bodies. Doklady Biochemistry and Biophysics. 442:57-60.
Sugden D, Werritty A, Webb J, Caldwell E, Campbell CD, Dlugolecki A, Hanley N, Kerr A.  2012.  Multi-level governance: opportunities and barriers in moving to a low-carbon Scotland. Earth and Environmental Science, Transactions of the Royal Society of Edinburgh. 103:175-186.
Elliott GN, Thomas N, MacRae M, Campbell CD, Ogden ID, Singh BK.  2012.  Multiplex T-RFLP allows for increased target number and specificity: Detection of Salmonella enterica and six species of Listeria in a single test. PLoS One. 7:e43672.
Comadran J, Kilian B, Russell JR, Ramsay L, Stein N, Ganal M, Shaw P, Bayer M, Thomas WTB, Marshall DF et al..  2012.  Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nature Genetics. 44:1388-1392.
Zhang H, Liu YX, Xu Y, Chapman SN, Love AJ, Xia T.  2012.  A newly isolated Na+/H+ antiporter gene, DmNHX1, confers salt tolerance when expressed transiently in Nicotiana benthamiana or stably in Arabidopsis thaliana. Plant Cell Tissue and Organ Culture. 110:189-200.
Fonseca MB, Peix A, de Faria SM, Mateos PF, Rivera LP, Simoes-Araujo JL, Franca MGC, dos Santos Isias RM, Cruz C, Velazquez E et al..  2012.  Nodulation in Dimorphandra wilsonii Rizz. (Caesalpinioideae), a threatened species native to the Brazilian Cerrado. PLoS ONE. 7:e49520.
Swanson MM, Reavy B, Makarova KS, Cock PJ, Hopkins DW, Torrance L, Koonin EV, Taliansky M.  2012.  Novel bacteriophages containing a genome of another bacteriophage within their genomes. PLoS ONE. 7:e40683.
Withers PJA, May L, Jarvies HP, Jordan P, Doody D, Foy RH, Bechmann M, Cooksley SL, Dils R, Deal N.  2012.  Nutrient emissions to water from septic tank systems in rural catchments: uncertainties and implications for policy. Environmental Science and Policy.. 24:71-82.
Thonur L, Maley M, Gilray J, Crook T, Laming E, Turnbull D, Nath M, Willoughby K.  2012.  One-step multiplex real time RT-PCR for the detection of bovine respiratory syncytial virus, bovine herpesvirus 1 and bovine parainfluenza virus 3. BMC Veterinary Research. 8:37-37.
Clark KE, Hartley SE, Brennan RM, MacKenzie K, Johnson SN.  2012.  Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status. Agricultural and Forest Entomology. 14:157-163.
Marion G, McInerny GJ, Pagel J, Catterall S, Cook AR, Hartig F, O'Hara RB.  2012.  Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. Journal of Biogeography. 39:2225-2239.
Chase-Topping ME, Rosser T, Allison LJ, Courcier, Evans J, McKendrick IJ, Pearce MC, Handel I, Caprioli A, Karch H et al..  2012.  Pathogenic potential to humans of bovine Escherichia coli O26, Scotland. Emerging Infectious Diseases. 18:439-448.
Brown EM, McDougall GJ, Stewart D, Pereira Caro G, Gonzalez-Barrio R, Allsopp P, Magee P, Crozier A, Rowland I, Gill CIR.  2012.  Persistence of anticancer activity in berry extracts after simulated gastrointestinal digestion and colonic fermentation. PLoS ONE. 7:e49740.
Greer E, Martin AC, Pendle A, Colas I, Jones AME, Moore G, Shaw P.  2012.  The Ph1 locus suppresses Cdk2-type activity during premeiosis and meiosis in wheat. The Plant Cell. 24:152-162.
Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ et al..  2012.  A physical, genetic and functional sequence assembly of the barley genome. Nature. 491:711-716.
Chichkova NV, Tuzhikov AI, Taliansky ME, Vartapetian AB.  2012.  Plant phytaspases and animal caspases: structurally unrelated death proteases with a common role and specificity. Physiologia Plantarum. 145:77-84.
Cowan GH, Roberts AG, Chapman SN, Ziegler A, Savenkov EI, Torrance L.  2012.  The potato mop-top virus TGB2 protein and viral RNA associate with chloroplasts and viral infection induces inclusions in the plastids. Frontiers in Plant Science. 3
Aitkenhead MJ, Coull MC, Towers W, Hudson G, Black HIJ.  2012.  Predicting soil chemical composition and other soil parameters from field observations using a neural network. Computers and Electronics in Agriculture. 82:108-116.
Nielsen UN, Osler GHR, Campbell CD, Burslem DFRP, van der Wal R.  2012.  Predictors of fine-scale spatial variation in soil mite and microbe community composition differ between biotic groups and habitats. Pedobiologia. 55:83-91.
Avery LM, Booth P, Campbell CD, Tompkins D, Hough RL.  2012.  Prevalence and survival of potential pathogens in source segregated green waste compost. Science of the Total Environment. 431:128-138.
Urquhart J, Courtney P, Slee W.  2012.  Private woodland owners' perspectives on multifunctionality in English woodlands. Journal of Rural Studies. 28:95-106.
Ryan CM, Hill T, Woollen E, Ghee C, Mitchard E, Cassells G, Grace J, Woodhouse IH, Williams M.  2012.  Quantifying small-scale deforestation and forest degradation in African woodlands using radar imagery. Global Change Biology. 18:243-257.
Ponce-Molina LJ, Casas AM, Gracia MP, Silvar C, Mansour E, Thomas WTB, Schweizer G, Herz M, Igartua E.  2012.  Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross. Crop Science. 52:2469-2480.
Wening S, Croxford AE, Ford CS, Thomas WTB, Forster BP, Okyere-Boateng G, Nelson SPC, Caligari PDS, Wilkinson MJ.  2012.  Ranking the value of germplasm: new oil palm (Elaeis guineensis) breeding stocks as a case study. Annals of Applied Biology. 160:145-156.
McGavin WJ, Mitchell C, Cock PJA, Wright KM, MacFarlane SA.  2012.  Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA. Journal of General Virology. 93:430-437.
Stopher KV, Nussey DH, Clutton-Brock TH, Guinness F, Morris A, Pemberton JM.  2012.  Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer. Journal of Evolutionary Biology. 25:2457-2469.
Stutter MI, Shand CA, George TS, Blackwell MSA, Bol R, Mackay RL, Richardson AE, Condron LM, Turner BL, Haygrath PM.  2012.  Recovering phosphorus from soil - A root solution? Environmental Science and Technology. 46:1977-1978.
Schulte RPO, Fealy R, Creamer RE, Towers W, Harty T, Jones RJA.  2012.  A review of the role of excess soil moisture conditions in constraining farm practices under Atlantic conditions. Soil Use and Management. 28:580-589.
Tan HW, Weir BS, Carter N, Heenan PB, Ridgway HJ, James EK, Sprent JI, Young JPW, Andrews M.  2012.  Rhizobia with 16S rRNA and nifH similar to Mesorhizobium huakuii but Novel recA, glnII, nodA and nodC genes are symbionts of New Zealand Carmichaelinae. PLoS ONE, e47677. 7
Stutter MI, Chardon WJ, Kronvang B.  2012.  Riparian buffer strips as a multifunctional management tool in agricultural landscapes: introduction. Journal of Environmental Quality. 41:297-303.
Cole LJ, Brocklehurst S, Elston DA, McCracken DI.  2012.  Riparian field margins: can they enhance the functional structure of ground beetle (Coleoptera: Carabidae) assemblages in intensively managed grassland landscapes? Journal of Applied Ecology. 49:1384-1395.
Cole LJ, Brocklehurst S, McCracken DI, Harrison W, Robertson D.  2012.  Riparian field margins: their potential to enhance biodiversity in intensively managed grasslands. Insect Conservation and Diversity. 5:86-94.
Hough RL, Booth P, Avery LM, Rhind SM, Crews C, Bacon J, Campbell CD, Tompkins D.  2012.  Risk assessment of the use of PAS100 green composts in sheep and cattle production in Scotland. Waste Management. 32:117-130.
Bradford RA, O'Sullivan JJ, van der Craats IM, Krywkow J, Rotko P, Bonaiuto M, Waylen K, Schelfaut K.  2012.  Risk perception - Issues for flood management in Europe. Natural Hazards and Earth System Sciences. 12:2299-2309.
Gonzalez I, Rakitina DV, Semashko MA, Taliansky ME, Praveen S, Palukaitis P, Carr JP, Kalinina N, Canto T.  2012.  RNA binding is more critical to the suppression of silencing function of Cucumber mosaic virus 2b protein than nuclear localization. RNA. 18:771-782.
Charkowski A, Blanco C, Condemine G, Expert D, Franza T, Hayes C, Hugouvieux-Cotte-Pattat N, Lopez Solanilla E, Low D, Moleleki L et al..  2012.  The role of secretion systems and small molecules in soft-rot enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50:425-449.
Templer PH, Mack MC, Chapin FS, Christenson LM, Compton JE, Crook HD, Currie WS, Curtis CJ, Dail DB, D'Antonio CM et al..  2012.  Sinks for nitrogen inputs in terrestrial ecosystems: a meta-analysis of N-15 tracer field studies. Ecology. 93:1816-1829.
Bouma J, Broll G, Crane TA, Dewitte O, Gardi C, Schulte R, Towers W.  2012.  Soil information in support of policy making and awareness raising. Current Opinion in Environmental Sustainability. 4:1-7.
White PJ, Crawford J, Alvarez MCD, Moreno RG.  2012.  Soil management for sustainable agriculture (Editorial). Applied and Environmental Soil Science. 2012
Edwards AC, Watson HA, Cook YEM.  2012.  Source strengths, transport pathways and delivery mechanisms of nutrients, suspended solids and coliforms within a small agricultural headwater catchment. Science of the Total Environment. 434:123-129.
Deeks MJ, Calcutt JR, Ingle EKS, Hawkins TJ, Chapman SN, Richardson AC, Mentlak DA, Dixon MR, Cartwright F, Smertenko AP et al..  2012.  A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Current Biology. 22:1595-1600.
Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W.  2012.  A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis. The Plant Cell. 24:3506-3529.
White PJ, Broadley MR, Thompson JA, McNicol JW, Crawley MJ, Poulton PR, Johnston AE.  2012.  Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment. New Phytologist. 196:101-109.
Clemente MR, Bustos-Sanmamed P, Loscos J, James EK, Perez-Rontome C, Navascues J, Gay M, Becana M.  2012.  Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
Dai F, Nevo E, Wu DZ, Comadran J, Zhou MX, Qiu L, Chen ZH, Beiles A, Chen GX, Zhang GP.  2012.  Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:16969-16973.
Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow M, Verdier V, Beer SV, Machado MA et al..  2012.  Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology. 13:614-629.
Buijs A, Hovardas T, Castro P, Devine-Wright P, Figari H, Fischer A, Mouro C, Selge S.  2012.  Understanding people's ideas on natural resource management: research on social representations of nature. Society and Natural Resources.. 25:1167-1181.
Aitkenhead MJ, Owen M, Chambers DM.  2012.  Use of artificial neural networks in measuring characteristics of shielded radioactive plutonium for arms control. Journal of Analytical Atomic Spectrometry.. 27:432-439.
Hoggard N, Cruickshank M, Moar KM, Bashir S, Mayer CD.  2012.  Using gene expression to predict differences in the secretome of human omental vs. subcutaneous adipose tissue. Obesity. 20:1158-1167.
Gimona A, Poggio L, Brown I, Castellazzi M.  2012.  Woodland networks in a changing climate: Threats from land use change. Biological Conservation. 149:93-102.
2011
Bouwman FG, de Roos B, Rubio-Aliaga I, Crosley LK, Duthie SJ, Mayer CD, Horgan GW, Polley AC, Heim C, Coort SLM et al..  2011.  2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting. BMC Medical Genomics. 4
Mayor DJ, Cook K, Thornton B, Walsham P, Witte UFM, Zuur AF, Anderson TR.  2011.  Absorption efficiencies and basal turnover of C, N and fatty acids in a marine Calanoid copepod. Functional Ecology. 25:509-518.
Sun XL, Gilroy EM, Chini A, Nurmberg PL, Hein I, Lacomme C, Birch PRJ, Hussain A, Yun BW, Loake GJ.  2011.  ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
Russell JR, Dawson IK, Flavell AJ, Steffenson B, Weltzien E, Booth A, Ceccarelli S, Grando S, Waugh R.  2011.  Analysis of >1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes. New Phytologist. 191:564-578.
Yong SYC, Choong CY, Cheong PL, Pang SL, Amalina RN, Harikrishna JA, Mat-Isa MN, Hedley PE, Milne L, Vaillancourt RE et al..  2011.  Analysis of ESTs generated from inner bark tissue of an Acacia auriculiformis x Acacia mangium hybrid. Tree Genetics and Genomes. 7:143-152.
Knapp CW, McCluskey SM, Singh BK, Campbell CD, Hudson G, Graham DW.  2011.  Antibiotic resistance gene abundances correlate with metal and geochemical conditions in archived Scottish soils. PLoS ONE. 6:e27300.
Barrett G, Campbell CD, Fitter AH, Hodge A.  2011.  The arbuscular mycorrhizal fungus Glomus hoi can capture and transfer nitrogen from organic patches to its associated host plant at low temperature. Applied Soil Ecology. 48:102-105.
Rosling A, Cox F, Cruz-Martinez K, Ihrmark K, Grelet GA, Lindahl BD, Menkis A, James TY.  2011.  Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science. 333:876-879.
Mitchell C, Brennan RM, Cross JV, Johnson SN.  2011.  Arthropod pests of currant and gooseberry crops in the UK: their biology, management and future prospects. Agricultural and Forest Entomology. 13:221-237.
Cornulier T, Robinson RA, Elston DA, Lambin X, Sutherland WJ, Benton T.  2011.  Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution. 2:86-94.
Cooper JM, Burton D, Daniell TJ, Griffiths BS, Zebarth BJ.  2011.  Carbon mineralization kinetics and soil biological characteristics as influenced by manure addition in soil incubated at a range of temperatures. European Journal of Soil Biology. 47:392-399.
Brown I, Poggio L, Gimona A, Castellazzi MS.  2011.  Climate change, drought risk and land capability for agriculture: implications for land-use in Scotland. Regional Environmental Change. 11:503-518.
Chakraborty SK, Newton AC.  2011.  Climate change, plant diseases and food security: an overview. Plant Pathology. 60:2-14.
Kikvidze Z, Michalet R, Brooker RW, Cavieres LA, Lortie CJ, Pugnaire FI, Callaway RM.  2011.  Climatic drivers of plant-plant interactions and diversity in alpine communities. Alpine Botany. 121:63-70.
Chen XW, Hedley PE, Morris J, Liu H, Niks RE, Waugh R.  2011.  Combining genetical genomics and bulked segregant analysis-based differential expression: an approach to gene localization. Theoretical and Applied Genetics. 122:1375-1383.
Bayer MM, Milne I, Stephen G, Shaw P, Cardle L, Wright F, Marshall DF.  2011.  Comparative visualization of genetic and physical maps with Strudel. Bioinformatics. 27:1307-1308.
Cullen DW, Harwood WA, Smedley M, Davies HV, Taylor MA.  2011.  Comparison of DNA walking methods for isolation of transgene flanking regions in GM potato. Molecular Biotechnology. 49:19-31.
Dick J, Andrews C, Beaumont DA, Benham S, Brooks DR, Corbett S, Lloyd D, McMillan S, Monteith DT, Pilgrim ES et al..  2011.  A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
Vinten AJA, Artz RRE, Thomas N, Potts JM, Avery LM, Langan SJ, Watson H, Cook Y, Taylor C, Abel C et al..  2011.  Comparison of microbial community assays for the assessment of stream biofilm ecology. Journal of Microbiological Methods. 85:190-198.
Glenk K, Colombo S.  2011.  Designing policies to mitigate the agricultural contribution to climate change: an assessment of soil based carbon sequestration and its ancillary effects. Climatic Change. 105:43-66.
Benavides J, Maley SM, Pang YP, Palarea J, Eaton SL, Katzer F, Innes EA, Buxton DA, Chianini F.  2011.  Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology. 179:209-215.
Lewis FI, Brulisauer F, Cousens C, McKendrick IJ, Gunn GJ.  2011.  Diagnostic accuracy of PCR for Jaagsiekte sheep retrovirus using field data from 125 Scottish sheep flocks. Veterinary Journal. 187:104-108.
Woinarski JCZ, Legge S, Fitzsimons JA, Traill BJ, Burbidge AA, Fisher A, Firth RSC, Gordon IJ, Griffiths AD, Johnson C et al..  2011.  The disappearing mammal fauna of northern Australia: context, cause, and response. Conservation Letters. 4:192-201.
Sun B, Hallett PD, Caul S, Daniell TJ, Hopkins DW.  2011.  Distribution of soil carbon and microbial biomass in arable soils under different tillage regimes. Plant and Soil. 338:17-25.
Hepburn CD, Pritchard DW, Cornwall CE, McLeod RJ, Beardall J, Raven JA, Hurd CL.  2011.  Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Global Change Biology. 17:2488-2497.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.