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2010

Hodgson JG, Sharafi M, Jalili A, Diaz S, Montserrat-Marti G, Palmer C, Cerabolini B, Pierce S, Hamzehee B, Asri Y et al.. 2010. Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.

Joshi MV, Mann SG, Antelmann H, Widdick DA, Fyans JK, Chandra G, Hutchings MI, Toth IK, Hecker M, Loria R et al.. 2010. The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.

Zhang K, Greenwood DJ, Spracklen WP, Rahn CR, Hammond JP, White PJ, Burns IG. 2010. A universal agro-hydrological model for water and nitrogen cycles in the soil-crop system SMCR_N: Critical update and further validation. Agricultural Water Management. 97:1411-1422.

Henton E, Meier-Augenstein W, Kemp HF. 2010. The use of oxygen isotopes in sheep molars to investigate past herding practices at the neolithic settlement of . Archaeometry. 52:429-449. Abstract

Lichner L, Hallett PD, Orfanus T, Czachor H, Rajkai K, Sir M, Tesai M. 2010. Vegetation impact on the hydrology of an aeolian sandy soil in a continental climate. Ecohydrology. 3:413-420.

Waugh R, Marshall DF, Thomas WTB, Comadran J, Russell JR, Close T, Stein N, Hayes P, Muehlbauer G, Cockram J et al.. 2010. Whole-genome association mapping in elite inbred crop varieties. Genome. 53:967-972.

Subedi M, Hocking TJ, Fullen MA, McCrea AR, Milne E. 2010. Agro-environmental project duration and effectiveness in South-East Asia. Outlook on Agriculture. 39(2):107-113.

Ode A, Hagerhall C, Sang N. 2010. Analysing visual landscape complexity: theory and application. Landscape Research. 35(1):111-131.

Shand CA, Balsam M, Hillier SJ, Hudson G, Newman G, Arthur JR, Nicol F. 2010. Aqua regia extractable selenium contents of some Scottish topsoils measured by ICP-MS and the relationship with mineral and organic components. Journal of the Science of Food and Agriculture. 90(6):972-980.

Andrist Rangel Y, Hillier S, Oborn I, Lilly A, Towers W, Edwards AC, Paterson E. 2010. Assessing potassium reserves in northern temperate grassland soils: A perspective based on quantitative mineralogical analysis and aqua-regia extractable potassium. Geoderma. 158(3-4):303-314.

Clark JM, Gallego-Sala AV, Allott TEH, Chapman SJ, Farewell T, Freeman C, House JI, Orr HG, Prentice IC, Smith P. 2010. Assessing the vulnerability of blanket peat to climate change using an ensemble of statistical bioclimatic envelope models. Climate Research. 45:131-150.

Gallego-Sala AV, Clark JM, House JI, Orr HG, Prentice IC, Smith P, Farewell T, Chapman SJ. 2010. Bioclimatic envelope model of climate change impacts on blanket peatland distribution in Great Britain. Climate Research. 45:151-162.

Hanson S, Nicholls RJ, Balson P, Brown I, French JR, Spencer T. 2010. Capturing coastal geomorphological change within regional integrated assessment: an outcome-driven fuzzy logic approach. Journal of Coastal Research. 26(5):831-842.

Smith P, Bhogal P, Edgington P, Black H, Lilly A, Barraclough D, Worrall F, Hillier J, Merrington G. 2010. Consequences of feasible future agricultural land use change on soil organic carbon stocks and greenhouse gas emissions in Great Britain. Soil Use and Management. 26(4):381-398.

Harrison A, Newey SJ, Gilbert L, Haydon DT, Thirgood SJ. 2010. Culling wildlife hosts to control disease: mountain hares, red grouse and louping ill virus. Journal of Applied Ecology. 46(4):926-930.

Hough RL, Crews C, White D, Driffield M, Campbell CD, Maltin C. 2010. Degradation of yew, ragwort and rhododendron toxins during composting. The Science of the Total Environment. 408(19):3128-4137.

Li XQ, Sveshnikov D, Zebarth BJ, Tai H, De Koeyer D, Millard P, Haroon M, Singh M. 2010. Detection of nitrogen deficiency in potato plants using gene expression markers. American Journal of Potato Research. 87(1):50-59.

MacLeod M, Moran D, Eory V, Rees RM, Barnes A, Topp CFE, Ball B, Hoad S, Wall E, McVittie A et al.. 2010. Developing greenhouse gas marginal abatement cost curves for agricultural emissions from crops and soils in the UK. Agricultural Systems. 103(4):198-209.

Young S, Wilson MJ, Hillier S, Delbos E. 2010. Differences and commonalities in physical, chemical and mineralogical properties of Zanzibari geophagic soils. Journal of Chemical Ecology.. 36(1):129-140.

Rhind SM, Evans NP, Bellingham M, Sharpe RM, Cotinot C, Mandon-Pepin B, Loup B, Sinclair KD, Lea RG, Pocar P et al.. 2010. Effects of environmental pollutants on the reproduction and welfare of ruminants. Animal. 4(7):1227-1239.

Silvertown J, Tallowin J, Stevens C, Power SA, Morgan V, Emmett B, Hester AJ, Grime P, Morecroft M, Buxton R et al.. 2010. Environmental myopia: a diagnosis and a remedy. Trends in Ecology and Evolution. 25(10):556-561.

Smith J, Gottschalk P, Bellarby J, Chapman SJ, Lilly A, Towers W, Bell J, Coleman K, Nayak D, Richards M et al.. 2010. Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties. Climate Research. 45:179-192.

Speed JDM, Austrheim G, Hester AJ, Mysterud, A. 2010. Experimental evidence for herbivore limitation of the treeline. Ecology. 91(11):3414-3420.

Day-Stirrat RJ, Dutton S, Milliken KL, Loucks RG, Aplin AC, Hillier S, van der Pluijm BA. 2010. Fabric anisotropy induced by primary depositional variations in the silt: clay ratio in two fine-grained slope fan complexes: Texas Gulf Coast and Northern North Sea. Sedimentary Geology. 226(1-4):42-53.

Smout S, Asseburg C, Matthiopoulos J, Fernandez C, Redpath S, Thirgood SJ, Harwood J. 2010. The functional response of a generalist predator. PLoS ONE. 5(5):e10761.

Reed MS, Bonn A, Slee W, Beharry-Borg N, Birch J, Brown I, Burt TP, Chapman D, Chapman PJ, Clay G et al.. 2010. The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.

Kutalek R, Wewalkab G, Gundacker C, Auere H, Wilson MJ, Haluzag D, Huhulescu S, Hillier S, Sagerh M, Prinz A. 2010. Geophagy and potential health implications: geohelminths, microbes and heavy metals. Transactions of the Royal Society of Tropical Medicine and Hygiene. 104(12):787-795.

Oom SP, Hester AJ, Legg CJ. 2010. Grazing across grass: shrub boundaries: Can spatial heterogeneity increase resistance? Agriculture, Ecosystems and Environment. 139(1-2):159-166.

Ross LC, Woodin SJ, Hester AJ, Thompson DBA, Birks HJB. 2010. How important is plot relocation accuracy when interpreting re-visitation studies of vegetation change? Plant Ecology and Diversity. 3(1):1-8.

Sutherland WJ, Albon SD, Allison H, Armstrong-Brown S, Bailey MJ, Bereton T, Boyd IL, Carey P, Edwards J, Gill M et al.. 2010. The identification of priority opportunities for UK nature conservation policy. Journal of Applied Ecology. 47(5):955-965.

Marriott CA, Fisher JM, Hood K, Pakeman RJ. 2010. Impacts of extensive grazing and abandonment on grassland soils and productivity. Agriculture, Ecosystems and Environment. 139:476-482.

Faisal A, Dondelinger F, Husmeier D, Beale CM. 2010. Inferring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5(6):451-464.

Sebert SP, Hyatt MA, Chan LLY, Yiallourides M, Fainberg HP, Patel N, Sharkey D, Stephenson T, Rhind SM, Bell RC et al.. 2010. Influence of prenatal nutrition and obesity on tissue specific fat mass and obesity-associated (FTO) gene expression. Reproduction. 139(1):265-274.

Griffiths BS, Ball BC, Daniell TJ, Hallett PD, Neilson R, Wheatley RE, Osler GHR, Bohanec M. 2010. Integrating soil quality changes to arable agricultural systems following organic matter addition, or adoption of a ley-arable rotation. Applied Soil Ecology. 46(1):43-53.

Macleod CJA, Haygarth PM. 2010. Integrating water and agricultural management under climate change. The Science of the Total Environment. 408(23):5619-5622.

Pilgrim ES, Macleod CJA, Blackwell MSA, Bol R, Hogan DV, Chadwick DR, Cardenas L, Misselbrook TH, Haygarth PM, Brazier RE et al.. 2010. Interactions among agricultural production and other ecosystem services delivered from European temperate grassland systems. Advances in Agronomy. 109:117-154.

Helliwell RC, Britton AJ, Gibbs S, Fisher JM, Potts JM. 2010. Interactive effects of nitrogen deposition, land management and weather on soil solution chemistry in a Scottish low-alpine heath. Ecosystems. 13(5):696-711.

Mitchell RJ, Hester AJ, Campbell CD, Chapman SJ, Cameron CM, Hewison RL, Potts JM. 2010. Is vegetation composition or soil chemistry the best predictor of the soil microbial community? Plant and Soil. 333(1-2):417-430.

Hough RL, Fletcher T, Leonardi GS, Goessler W, Gnagnarella P, Clemens F, Gurzau E, Koppova K, Rudnai P, Kumar R et al.. 2010. Lifetime exposure to arsenic in residential drinking water in Central Europe. International Archives of Occupational and Environmental Health. 83(5):471-481.

Evans C, Cooper D, Monteith D, Helliwell R, Moldan F, Hall J, Rowe E, Cosby J. 2010. Linking monitoring and modelling: can long-term datasets be used more effectively as a basis for large-scale prediction? Biogeochemistry. 101(1-3):211-227.

Dawson LA, Hillier S. 2010. Measurement of soil characteristics for forensic applications. Surface and Interface Analysis. 42(5):363-377.

Papanikolaou N, Britton AJ, Helliwell RC, Johnson D. 2010. Nitrogen deposition, vegetation burning and climate warming act independently on microbial community structure and enzyme activity associated with decomposing litter in low-alpine heath. Global Change Biology. 16(11):3120-3132.

Minderman J, Reid JM, Hughes M, Denny MJH, Hogg S, Evans PGH, Whittingham MJ. 2010. Novel environment exploration and home range size in starlings Sturnus vulgaris. Behavioral Ecology. 21(6):1321-1329.

Day-Stirrat RJ, Milliken KL, Dutton SP, Loucks RG, Hillier S, Aplin AC, Schleicher AM. 2010. Open-system chemical behavior in deep Wilcox Group mudstones, Texas Gulf. Marine and Petroleum Geology.. 27(9):1804-1818.

Turner TL, Bourne EC, von Wettberg EJ, Hu T, Nuzhdin SV. 2010. Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils. Nature Genetics. 42:260-U42.

Helliwell RC, Simpson GL. 2010. The present is the key to the past, but what does the future hold for the recovery of surface waters from acidification? Water Research. 44(10):3166-3180.

Hogberg MN, Briones MJI, Keel SG, Metcalfe DB, Campbell C, Midwood AJ, Thornton B, Hurry V, Linder S, Nasholm T et al.. 2010. Quantification of effects of season and nitrogen supply on tree belowground carbon transfer. New Phytologist. 187(2):485-493.

Millard P, Midwood AJ, Hunt JE, Barbour MM, Whitehead D. 2010. Quantifying the contribution of soil organic matter turnover to forest soil respiration using natural abundance delta 13C. Soil Biology and Biochemistry. 42(6):935-943.

Oborn I, Edwards AC, Hillier S. 2010. Quantifying uptake rate of potassium from soil in a long-term gras rotation experiment. Plant and Soil. 335(1-2):3-19.

Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA. 2010. The response of organic matter mineralisation to nutrient and substrate additions in sub-arctic soils. Soil Biology and Biochemistry. 42(1):92-100.

Hough RL, Towers W, Aalders IH. 2010. The risk of peat erosion from climate change: land management combinations: an assessment with bayesian belief networks. Human and Ecological Risk Assessment. 16(5):962-976.

Fominai M, Burford EP, Hillier S, Kierans M, Gadd GM. 2010. Rock building fungi. Geomicrobiology Journal. 27(6-7):624-629.

Woodward G, Dybkjaer JB, Olafsson JS, Gislason GM, Hannesdottir ER, Friberg N. 2010. Sentinel systems on the razor's edge: effects of warming on Arctic geothermal stream ecosystems. Global Change Biology. 16(7):1979-1991.

Kerlin D, Thirgood, S.J.; Redpath S, Miller DR, Aebischer N, Smith A, Haydon D. 2010. State dependent dynamics of cycles in red grouse abundance. Ecography. 33(5):896-905.

Alexandrov GA, Ames D, Aumann C, Bellocchi G, Bruen M, Crout N, Erechtchoukova M, Hildebrandt A, Hoffman F, Jackisch C et al.. 2010. Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.

Phillip S, Hunter C, Blackstock KL. 2010. A typology for defining agritourism. Tourism Management. 31(6):754-758.

Troldborg M, Nowak W, Tuxen N, Bjerg PL, Helmig R, Binning PJ. 2010. Uncertainty evaluation of mass discharge estimates from a contaminated site using a fully Bayesian framework. Water Resources Research. 46(W12552)

Abarenkov K, Nilsson RH, Larsson KH, Alexander IJ, Eberhardt U, Erland S, Hoiland K, Kjoller R, Larsson E, Pennanen T et al.. 2010. The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.

2009

Song BK, Hein I, Druka A, Waugh R, Marshall DF, Nadarajah K, Yap SJ, Ratnam W. 2009. The 172 kb genomic DNA region of the O. rufipogon ylg1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica. Functional & Integrative Genomics. 9:97-108.

Bowen SR, Gregorich EG, Hopkins DW. 2009. Biochemical properties and biodegradation of dissolved organic matter from soils. Biology and Fertility of Soils. 45:733-742. Abstract

Woodward FI, Bardgett RD, Raven JA, Hetherington AM. 2009. Biological approaches to global environmental change: mitigation and remediation. Current Biology. 19:R615-R623.

Subbarao GV, Kishii M, Nakahara K, Ishikawa T, Ban T, Tsujimoto H, George TS, Berry WL, Hash CT, Ito O. 2009. Biological nitrification inhibition (BNI) - Is there potential for genetic interventions in Triticeae? Breeding Science. 59:529-545.

Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, Dalko A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B et al.. 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.

Harrison BD. 2009. A brief outline of the development of plant virology in the 20th century. Journal of Plant Pathology. 91:509-520.

Hillier J, Hawes C, Squire GR, Hilton A, Wale S, Smith P. 2009. The carbon footprints of food crop production. International Journal of Agicultural Sustainability. 7:107-118.

Eaton SL, Anderson MJ, Hamilton S, Gonz L, Sales J, Jeffrey M, Reid HW, Rocchi MA, Chianini F. 2009. CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.

Hudacsek P, Bransby MF, Hallett PD, Bengough AG. 2009. Centrifuge modelling of climatic effects on clay embankments. Proceedings of the Institution of Civil Engineers - Engineering Sustainability. 162:91-100.

Koza A, Hallett PD, Moon CD, Spiers AJ. 2009. Characterisation of a novel air-liquid interface biofilm of Pseudomonas fluorescens SBW25. Microbiology. 155:1397-1406.

Prashar A, Hocking PM, Erichsen JT, Fan Q, Saw S-M, Guggenheim JA. 2009. Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.

Tilston EL, Szili-Kov T, Hopkins DW. 2009. Contributions of labile and resistant organic materials to the immobilization of inorganic soil N when used in the restoration of abandoned agricultural fields. Soil Use and Management. 25:168-174. Abstract

Squire GR, Hawes C, Begg GS, Young MW. 2009. Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract

Cockell CS, L A, Fridlund M, Herbst TM, Kaltenegger L, Absil O, Beichman C, Benz W, Blanc M, Brack A et al.. 2009. Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.

McKenzie BM, Bengough AG, Hallett PD, Thomas WTB, Forster BP, McNicol JW. 2009. Deep rooting and drought screening of cereal crops: A novel field-based method and its application.. Field Crops Research. 112:165-171. Abstract

Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S et al.. 2009. Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics. 10:-582.

Brennan RM, Jorgensen L, Gordon SL, Loades K, Hackett CA, Russell JR. 2009. The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae). Theoretical and Applied Genetics. 118:205-211. Abstract

Hallett PD, Feeney D, Bengough AG, Rillig MC, Scrimgeour CM, Young IM. 2009. Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract

Dawson IK, Hedley PE, Guarino L, Jaenicke H. 2009. Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.

Barr P, McKenzie BM, Hallett PD. 2009. Earthworms bring compacted and loose soils to a similar mechanical state. Soil Biology & Biochemistry. 41:656-658. Abstract

Yang D, Zhang T, Zhang K, Greenwood DJ, Hammond JP, White PJ. 2009. An easily implemented agro-hydrological procedure with dynamic root simulation for water transfer in the crop-soil system: Validation and application. Journal of Hydrology. 370:177-190. Abstract

Wookey PA, Aerts R, Bardgett RD, Baptist F, Brathan KA, Cornelissen JHC, Gough L, Hartley IP, Hopkins DW, Lavorerl S et al.. 2009. Ecosystem feedbacks and cascade processes: understanding their role in the responses of Arctic and alpine ecosystems to environmental change. Global Change Biology. 15:1153-1172. Abstract

Wypijewski K, Hornyik C, Shaw JA, Stephens J, Goraczniak R, Gunderson SI, Lacomme C. 2009. Ectopic 5' splice sites inhibit gene expression by engaging RNA surveillance and silencing pathways in plants. Plant Physiology. 151:955-965.

Pawlett M, Hopkins DW, Moffett BF, Harris JA. 2009. The effect of earthworms and liming on soil microbial communities. Biology and Fertility of Soils. 45:361-369. Abstract

Ramirez-Farias C, Slezak K, Fuller Z, Duncan A, Holtrop G, Louis P. 2009. Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. British Journal of Nutrition. 101:541-550.

Gregory AS, Watts CW, Griffiths BS, Hallett PD, Kuan HL, Whitmore AP. 2009. The effect of long-term soil management on the physical and biological resilience of a range of arable and grassland soils in England. Geoderma. 153:172-185.

Kassim A, Poette J, Paterson A, Zait D, McCallum S, Woodhead M, Smith K, Hackett CA, Graham J. 2009. Environmental and seasonal influences on red raspberry anthocyanin antioxidant contents and identification of quantitative traits loci (QTL). Molecular Nutrition and Food Research. 53:625-634. Abstract

Ashman MR, Hallett PD, Brookes PC, Allen J. 2009. Evaluating soil stabilisation by biological processes using step-wise aggregate fractionation. Soil and Tillage Research. 102:209-215.

Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JWS, Green PJ, Barton GJ, Hutvagner G. 2009. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA. 15:2147-2160.

Osterrieder A, Carvalho CM, Latijnhouwers M, Johansen JN, Stubbs C, Botchway S, Hawes CL. 2009. Fluorescence lifetime imaging of interactions between Golgi tethering factors and small GTPases in plants. Traffic. 10:1034-1046.

Hawes C, Haughton AJ, Bohan DA, Squire GR. 2009. Functional approaches for assessing plant and invertebrate abundance patterns in arable systems. Basic and Applied Ecology. 10:34-42. Abstract

Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T et al.. 2009. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.

Caron-Lormier G, Bohan DA, Hawes C, Raybould A, Haughton AJ, Humphry RW. 2009. How might we model an ecosystem? Ecological Modelling. 220:1935-1949.

Madsen CT, Stephens J, Hornyik C, Shaw J, Collinge DB, Lacomme C, Albrechtsen M. 2009. Identification and characterization of barley RNA-directed RNA polymerases. Biochimica et Biophysica Acta. 1789:375-385.

Smith LA, Marion G, Swain DL, White PCL, Hutchings MR. 2009. Inter- and intra-specific exposure to parasites and pathogens via the faecal-oral route: a consequence of behaviour in a patchy environment. Epidemiology and Infection. 137:630-643.

Hopkins DW, Sparrow AD, Gregorich EG, Elberling B, Novis P, Fraser F, Scrimgeour CM, Dennis PG, Meier-Augenstein W, Greenfield LG. 2009. Isotopic evidence for the provenance and turnover of organic carbon by soil microorganisms in the Antarctic dry valleys. Environmental Microbiology. 11:597-608. Abstract

Torres-Ca P, Hinojosa MB, Garcia-Ruiz R, Daniell TJ, Carreira JA. 2009. Linking biogeochemical variability and microbial community structure in forest soils: Abies pinsapo-fir forests as a study case. Ecosistemas. 18:91-102.

Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ. 2009. Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.

Smith LA, Marion G, Swain DL, White PCL, Hutchings MR. 2009. Livestock grazing behavior and inter- versus intraspecific disease risk via the fecal-oral route. Behavioral Ecology. 20:426-432.

Graham J, Hackett CA, Smith K, Woodhead M, Hein I, McCallum S. 2009. Mapping QTLs for developmental traits in raspberry from bud break to ripe fruit. Theoretical and Applied Genetics. 118:1143-1155. Abstract

Hargreaves CE, Gregory PJ, Bengough AG. 2009. Measuring root traits in barley (Hordeum vulgare ssp. vulgare and ssp. spontaneum) seedlings using gel chambers, soil sacs and x-ray microtomography. Plant and Soil. 316:285-297.

Mickovski SB, Hallett PD, Bransby MF, Davies MCR, Sonnenberg R, Bengough AG. 2009. Mechanical reinforcement of soil by willow roots: impacts of root properties and root failure mechanism. Soil Science Society of America Journal. 73:1276-1285. Abstract

Pritchard L, Liu H, Booth C, Douglas E, Fran P, Schrenzel J, Hedley PE, Birch PRJ, Toth IK. 2009. Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.

Blower TR, Fineran PC, Johnson MJ, Toth IK, Humphreys DP, Salmond GPC. 2009. Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.

Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA. 2009. No evidence for compensatory thermal adaptation of soil microbial respiration in the study of Bradford et al. (2008). Ecology Letters. 12:E12-E14.

Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al.. 2009. Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.

Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA. 2009. A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract

Comadran J, Thomas WTB, van Eeuwijk FA, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A, Benbelkacem A et al.. 2009. Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.

Richardson AE, Hocking PJ, Simpson RJ, George TS. 2009. Plant mechanisms to optimise access to soil phosphorus. Crop and Pasture Science. 60:124-143.

Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD. 2009. Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.

Hein I, Birch PRJ, Danan S, Lefebvre V, Odeny DA, Gebhardt C, Trognitz F, Bryan GJ. 2009. Progress in mapping and cloning qualitative and quantitative resistance against Phytophthora infestans in potato and its wild relatives. Potato Research. 52:215-227.

Johnson SN, Hawes C, Karley AJ. 2009. Reappraising the role of plant nutrients as mediators of interactions between root- and foliar-feeding insects. Functional Ecology. 23:699-706. Abstract

Hancock RD. 2009. Recent patents on vitamin C: Opportunities for crop improvement and single-step biological manufacture. Recent Patents on Food, Nutrition and Agriculture. 1:39-49. Abstract

White PJ, Bradshaw JE, Dale MFB, Ramsay G, Hammond JP, Broadley MR. 2009. Relationships between yield and mineral concentrations in potato tubers. Hortscience. 44:6-11. Abstract

Barr P, Hallett PD. 2009. Rheological stabilisation of wet soils by model root and fungal exudates depends on clay mineralogy. European Journal of Soil Science. 60:525-538. Abstract

Hinsinger P, Bengough AG, Vetterlein D, Young IM. 2009. Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.

Wang MH, Hu XH, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo ZW. 2009. Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Computational Biology. 5:-e1000317.

Crampton BG, Hein I, Berger DK. 2009. Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.

Andrews M, Maule HG, Hodge S, Cherrill A, Raven JA. 2009. Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.

Lehrach WP, Husmeier D. 2009. Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.

Visser RGF, Bachem CWB, de Boer JM, Bryan GJ, Chakrabati SK, Feingold S, Gromadka R, van Ham RCHJ, Huang SW, Jacobs JME et al.. 2009. Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.

Hammond JP, Broadley MR, White PJ, King GJ, Bowen HC, Hayden R, Meacham MC, Mead A, Overs T, Spracklen WP et al.. 2009. Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.

Maestre FT, Bowker M, Puche MD, Bowker M, Hinojosa MB, Mart I, Garc P, Castillo AP, Soliveres S, Luzuriaga AL et al.. 2009. Shrub encroachment can reverse desertification in semi-arid Mediterranean grasslands. Ecology Letters. 12:930-941. Abstract

McKenzie BM, K S, MacKenzie K, Peth S, Horn R. 2009. Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.

Garc R, Ochoa V, Vi B, Hinojosa MB, Pe R, Li G, Linares JC, Carreira JA. 2009. Soil enzymes, nematode community and selected physico-chemical properties as soil quality indicators in organic and conventional olive oil farming: influence of seasonality and site features. Applied Soil Ecology. 41:305-314. Abstract

Hopkins DW, Waite IS, McNicol JW, Poulton PR, MacDonald AJ, O'Donnell AG. 2009. Soil organic carbon contents in long-term experimental grassland plots in the UK (Palace Leas and Park Grass) have not changed consistently in recent decades. Global Change Biology. 15:1739-1754. Abstract

White PJ, Hammond JP. 2009. The sources of phosphorus in the waters of Great Britain. Journal of Environmental Quality. 38:13-26. Abstract

Ki LP, Felber F, Flavell AJ, Guadagnuolo R, Guiatti D, Hauser TP, Olivieri AM, Scotti I, Syed NH, Vischi M et al.. 2009. Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.

Tyler A, Hunter PD, Carvalho L, Codd GA, Elliott JA, Ferguson CA, Hanley ND, Hopkins DW, Maberly SC, Mearns KJ et al.. 2009. Strategies for monitoring and managing mass populations of toxic cyanobacteria in recreational waters: A multi-interdisciplinary approach. Environmental Health. 8 Supplement 1:-S11.

Weaver J, Briscoe T, Hou M, Goodman C, Kata S, Ross HA, McDougall GJ, Stewart D, Riches A. 2009. Strawberry polyphenols are equally cytotoxic to tumourigenic and normal human breast and prostate cell lines. International Journal of Oncology. 34:777-786.

Wright HW, Bartley K, Nisbet AJ, McDevitt RM, Sparks NHC, Brocklehurst S, Huntley JF. 2009. The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.

Hurd CL, Hepburn CD, Currie KI, Raven JA, Hunter KA. 2009. Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.

Goodall N, Kisiswa L, Prashar A, Faulkner S, Tokarczuk P, Singh K, Erichsen JT, Guggenheim J, Halfter W, Wride MA. 2009. Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.

Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F. 2009. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics. 25:126-127.

Bahar B, Moloney AP, Monahan FJ, Harrison SM, Zazzo A, Scrimgeour CM, Begley IS, Schmidt O. 2009. Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.

Davidson RS, Marion G, White PCL, Hutchings MR. 2009. Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.

Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan GW, Johnson IT, Mariman EC, Elliott RM et al.. 2009. Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes and Nutrition. 4:95-102.

Hein I, Gilroy EM, Armstrong MR, Birch PRJ. 2009. The zig-zag-zig in oomycete-plant interactions. Molecular Plant Pathology. 10:547-562.

Britton AJ, Beale CM, Towers W, Hewison RL. 2009. Biodiversity gains and losses: evidence for homogenisation of Scottish alpine vegetation. Biological Conservation. 142:1728-1739.

Townsend SE, Newey SJ, Thirgood SJ, Matthews L, Haydon DT. 2009. Can parasites drive population cycles in mountain hares? Proceedings of the Royal Society of London, B. 276(1662):1611-1617.

Simonsson M, Hillier S, Oborn I. 2009. Changes in clay minerals and potassium fixation capacity as a result of release and fixation of potassium in long-term field experiments. Geoderma. 151(3-4):109-120.

Howgate OR, Kenyon W. 2009. Community co-operation with natural flood management: A case study in the Scottish Borders. Area.. 41(3):329-340.

Aalders IH, Ball B, Black HIJ, Campbell CD, Griffiths B, Hopkins D, Hough RL, Lilly A, McKenzie B, Rees RM et al.. 2009. Considerations for Scottish soil monitoring in the European context. European Journal of Soil Science. 60(5):833-843.

Edwards P, Farrington J, Mellish C, Philip L, Chorley AH, Hielkema F, Pignotti E, Reid R, Polhill JG, Gotts NM. 2009. e-Social science and evidence-based policy assessment: challenges and solutions. Social Science Computer Review. 27(4):553-568.

Mossop KF, Davidson CM, Ure AM, Shand CA, Hillier SJ. 2009. Effect of EDTA on the fractionation and uptake by Taraxacum officinale of potentially toxic elements in soil from former chemical manufacturing sites. Plant and Soil. 320(1-2):117-129.

Lind PM, Gustacsson M, Hermsen S, Kyle CE, Orberg J, Rhind SM. 2009. Exposure to pastures fertilised with sewage sludge disrupts bone tissue homeostasis in sheep. The Science of the Total Environment. 407(7):2200-2208.

Wang HJ, Shi XZ, Yu DS, Weindorf DC, Huang B, Sun WX, Ritsema CJ, Milne E. 2009. Factors determining soil nutrient distribution in a small-scaled watershed in the purple soil region of Sichuan Province, China. Soil and Tillage Research. 105(2):300-306.

Harris G, Thirgood, S.J.; Redpath S, Hopcraft G, Berger J. 2009. Global decline in aggregated migrations of large terrestrial mammals. Endangered Species Research. 7:55-76.

Nicol L, Bishop SC, Pong-Wong R, Bendixen C, Holm LE, Rhind SM, McNeilly AS. 2009. Homozygosity for a single base-pair mutation in the oocytespecific GDF9 gene results in sterility in Thoka sheep. Reproduction. 138:921-933.

Hodgkins R, Cooper R, Wadham J, Tranter M. 2009. The hydrology of the proglacial zone of a high-Arctic glacier (Finsterwalderbreen, Svalbard): Atmospheric and surface water fluxes. Journal of Hydrology. 378(1-2):150-160.

Hibberd A, Maskaoui K, Zhang ZL, Zhou JL. 2009. An improved method for the simultaneous analysis of phenolic and steroidal estrogens in water and sediment. Talanta. 77(4):1315-1321.

Sibbald AM, Erhard HW, McLeod JE, Hooper RJ. 2009. Individual personality and the spatial distribution of grazing animals: an example with sheep. Behavioural Processes. 82(3):319-326.

Creamer RE, Bellamy P, Black HIJ, Cameron CCCD, Chamberlain P, Harris J, Parekh N, Pawlett M, Poskitt J, Stone D et al.. 2009. An inter-laboratory comparison of multi-enzyme and multiple substrate-induced respiration assays to assess method repeatability in soil monitoring. Biology and Fertility of Soils. 45(6):623-633.

Hughes J, Albon SD, Irvine RJ, Woodin S. 2009. Is there a cost of parasites to caribou? Parasitology. 136(2):253-265.

Marriott CA, Hood K, Fisher JM, Pakeman RJ. 2009. Long-term impacts of extensive grazing and abandonment on the species composition, richness, diversity and productivity of agricultural grassland. Agriculture, Ecosystems and Environment.. 134:190-200.

Futter MN, Forsius M, Holmberg M, Starr M. 2009. A long-term simulation of the effects of acidic deposition and climate change on surface water dissolved organic carbon concentrations in a boreal catchment. Hydrology Research.. 40(2-3):291-305.

Marwa EMM, Hillier S, Rice CM, Meharg AA. 2009. Mineralogical and chemical characterization of some vermiculites from the Mozambique Belt of Tanzania for agricultural use. Clay Minerals. 44(1):1-17.

Simpson SJ, Raubenheimer D, Charleston MA, Clissold FJ, Couzin ID, Kendall D, Clements KD, Ross A, Coleman RA, Dussutour A et al.. 2009. Modelling nutritional interactions: from individuals to communities. Trends in Ecology and Evolution.. 25(1):53-60.

Futter MN, Helliwell RC, Hutchins M, Aherne J. 2009. Modelling the effects of changing climate and nitrogen deposition on nitrate dynamics in a Scottish mountain catchment. Hydrology Research. 40(2-3):153-166.

Spash CL, Urama KC, Burton R, Kenyon W, Shannon PH, Hill G. 2009. Motives behind willingness to pay for improving biodiversity in a water ecosystem: economics, ethics and social psychology. Ecological Economics. 68(4):955-964.

Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al.. 2009. Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology. 11(10):2510-2525.

Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA. 2009. A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology and Biochemistry. 41(7):1450-1456.

Fraser MD, Davies DA, Vale JE, Nute GR, Hallett KG, Richardson RI, Wright IA. 2009. Performance and meat quality of native and continental cross steers grazing ryegrass/white clover improved pasture or semi-natural rough grazing. Livestock Science. 123:70-82.

Hall CM, Rhind SM, Wilson MJ. 2009. The potential for use of gastropod molluscs as bioindicators of endocrine disrupting compounds in the terrestrial environment. Journal of Environmental Monitoring. 11(3):491-497.

Ritz K, Black HIJ, Campbell CD, Harris J, Wood CM. 2009. Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development. Ecological Indicators. 9(6):1212-1221.

Shotyk W, Krachler M, Aeschbach-Hertig W, Hillier S, Zheng J. 2009. Trace elements in recent groundwater of an artesian flow system and comparison with snow: enrichments, depletions, and chemical evolution of the water. Journal of Environmental Monitoring, 12, 208-217..

Subedi M, Hocking TJ, Fullen MA, McCrea AR, Milne E, BoZhi W, Mitchell DJ. 2009. Use of farmers' indicators to evaluate the sustainability of cropping systems on sloping land in Yunnan Province, China. Pedosphere. 19(3):344-355.

Hrachowitz M, Soulsby C, Tetzlaff D, Dawson JJC, Dunn SM, Malcolm IA. 2009. Using long-term data sets to understand transit times in contrasting headwater catchments. Journal of Hydrology. 367(3-4):237-248.

Eveborn D, Gustafsson JP, Hesterberg D, Hillier S. 2009. XANES speciation of P in environmental samples: an assessment of filter media for on-site wastewater treatment. Environmental Science and Technology. 42(17):6515-6521.

2008

Walker CA, K M, Grenville-Briggs LJ, Avrova AO, Horner NR, McKinnon AD, Whisson SC, Birch PRJ, van West P. 2008. A putative DEAD-box RNA-helicase is required for normal zoospore development in the late blight pathogen Phytophthora infestans. Fungal Genetics and Biology. 45:954-962. Abstract

Marion G, Smith LA, Swain DL, Davidson RS, Hutchings MR. 2008. Agent-based modelling of foraging behaviour: the impact of spatial heterogeneity on disease risks from faeces in grazing systems. Journal of Agricultural Science. 146:507-520. Abstract

Newton AC, Hackett CA, Swanston JS. 2008. Analysing the contribution of component cultivars and cultivar combinations to malting quality, yield and disease in complex mixtures. Journal of the Science of Food and Agriculture. 88:2142-2152. Abstract

Wattegedera S, Rocchi M, Sales J, Howard CJ, Hope JC, Entrican G. 2008. Antigen-specific peripheral immune responses are unaltered during normal pregnancy in sheep. Journal of Reproductive Immunology. 77:171-178. Abstract

Beattie JH, Gordon MJ, Rucklidge GJ, Reid MD, Duncan GJ, Horgan GW, Cho YE, Kwun IS. 2008. Aorta protein networks in marginal and acute zinc deficiency. Proteomics. 8:2126-2135. Abstract

Hancock RD, Chudek S, Walker PG, Pont SDA, Viola R. 2008. Ascorbic acid conjugates isolated from the phloem of Cucurbitaceae. Phytochemistry. 69:1850-1858. Abstract

Caron-Lormier G, Humphry RW, Bohan DA, Hawes C, Thorbek P. 2008. Asynchronous and synchronous updating in individual-based models. Ecological Modelling. 212:522-527. Abstract

Cameron AR, Anton S, Melville L, Houston NP, Dayal S, McDougall GJ, Stewart D, Rena G. 2008. Black tea polyphenols mimic insulin/insulin-like growth factor-1 signalling to the longevity factor FOXO1a. Aging Cell. 7:69-77. Abstract

Hallett PD. 2008. A brief overview of the causes, impacts and amelioration of soil water repellency - a Review. Soil and Water Research. 3:S21-S29.

Sharma SK, Millam S, Bryan GJ, Hein I. 2008. Cloning and molecular characterisation of a potato SERK gene transcriptionally induced during initiation of somatic embryogenesis. Planta. 228:319-330. Abstract

Holden N, Pritchard L, Toth IK. 2008. Colonisation outwith the colon: plants as an alternative environmental reservoir for human pathogenic enterobacteria. FEMS Microbiology ReviewsFEMS Microbiology Reviews. 33:689-703.

Ram JC, Woche SK, Bachmann J, Goebel MO, Hallett PD. 2008. Comparing capillary rise contact angles of soil aggregates and homogenised soil. Geoderma. 146:336-343. Abstract

Abecia L, Balcells J, Fondevila M, Belenguer A, Holtrop G, Lobley GE. 2008. Contribution of gut microbial lysine to liver and milk amino acids in lactating does. British Journal of Nutrition. 100:977-983.

White PCL, B M, Marion G, Hutchings MR. 2008. Control of bovine tuberculosis in British livestock: there is no 'silver bullet'. Trends in Microbiology. 16:420-427. Abstract

Webster EA, Tilston EL, Chudek JA, Hopkins DW. 2008. Decomposition in soil and chemical characteristics of pollen. European Journal of Soil Science. 59:551-558. Abstract

Brennan RM, Jorgensen L, Hackett CA, Woodhead M, Gordon S, Russell JR. 2008. The development of a genetic linkage map of blackcurrant (Ribes nigrum L.) and the identification of regions associated with key fruit quality and agronomic traits.. Euphytica. 161:19-34. Abstract

Coulthurst SJ, Lilley KS, Hedley PE, Liu H, Toth IK, Salmond GPC. 2008. DsbA plays a critical and multifaceted role in the production of secreted virulence factors by the phytopathogen, Erwinia carotovora subsp. atroseptica. Journal of Biological Chemistry. 283:23739-23753. Abstract

Sneddon AA, Tsofliou F, Fyfe CL, Matheson I, Jackson DM, Horgan GW, Winzell MS, Wahle KWJ, Ahren B, Williams LM. 2008. Effect of a conjugated linoleic acid and omega-3 fatty acid mixture on body composition and adiponectin. Obesity. 16:1019-1024. Abstract

Davidson RS, Marion G, Hutchings MR. 2008. Effects of host social hierarchy on disease persistence. Journal of Theoretical Biology. 253:424-433. Abstract

Hinojosa MB, Carreira JA, Rodr JM, Garc R. 2008. Effects of pyrite sludge pollution on soil enzyme activities: Ecological dose-response model. Science of the Total Environment. 396:89-99. Abstract

Hensel G, Valkov V, Middlefell-Williams J, Kumlehn J. 2008. Efficient generation of transgenic barley: The way forward to modulate plant-microbe interactions. Journal of Plant Physiology. 165:71-82. Abstract

Hopkins DW, Sparrow AD, Shillam LL, English LC, Dennis PG, Novis P, Elberling B, Gregorich EG, Greenfield LG. 2008. Enzymatic activities and microbial communities in an Antarctic dry valley soil: Responses to C and N supplementation. Soil Biology & Biochemistry. 40:2130-2136. Abstract

Gunn GJ, Hall M, Hunter EA, Low JC. 2008. Evaluation of a survey approach to estimating the prevalence of cattle carrying antimicrobial-resistant Escherichia coli. Veterinary Journal. 175:416-418. Abstract

Broadley MR, White PJ, Hammond JP, Graham NS, Bowen HC, Emmerson ZF, Fray RG, Iannetta PPM, McNicol JW, May ST. 2008. Evidence of neutral transcriptome evolution in plants. New Phytologist. 180:587-593. Abstract

Chatterjee A, Horgan GW, Theobald CM. 2008. Exposure assessment for pesticide intake from multiple food products: a Bayesian latent-variable approach. Risk Analysis. 28:1727-1736. Abstract

Ducreux LJM, Morris WL, Prosser IM, Morris JA, Beale MH, Wright F, Shepherd T, Bryan GJ, Hedley PE, Taylor MA. 2008. Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes. Journal of Experimental Botany. 59:4219-4231. Abstract

M C, Crosley LK, Nicol F, Horgan GW, Mathers JC, Arthur JR, Hesketh JE. 2008. Functional effects of a common single-nucleotide polymorphism (GPX4c718t) in the glutathione peroxidase 4 gene: Interaction with sex. American Journal of Clinical Nutrition. 87:1019-1027. Abstract

Griffiths BS, Hallett PD, Kuan HL, Gregory AS, Watts CW, Whitmore AP. 2008. Functional resilience of soil microbial communities depends on both soil structure and microbial community composition. Biology and Fertility of Soils. 44:745-754. Abstract

Kloosterman B, De Koeyer D, Griffiths R, Flinn B, Steuernagel B, Scholz U, Sonnewald S, Sonnewald U, Bryan GJ, Prat S et al.. 2008. Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Functional & Integrative Genomics. 8:329-340. Abstract

Smykal P, Hybl M, Corander J, Jarkovsky J, Flavell AJ, Griga M. 2008. Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis. Theoretical and Applied Genetics. 117:413-424.

Denoys-Rothan B, Chartier P, Petit A, Gordon S, Graham J, Dolan A, Hofer M, Faedi W, Malteni M, Baruzzi G et al.. 2008. Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.