Publications list
Filters: First Letter Of Last Name is J [Clear All Filters]
Kodoja: A workflow for virus detection in plants using k-mer analysis of RNA-sequencing data. Journal of General Virology. 100:533-542.
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2019.
Knowledge Exchange: a review and research agenda for environmental management. Environmental Conservation. 40:19-36.
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2013.
Key actors in community-driven social innovation in rural areas in the Nordic countries. Journal of Rural Studies. 79:276-285.
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2020.
Juxta-membrane S-acylation of plant receptor-like kinases is likely fortuitous and does not necessarily impact upon function. Scientific Reports. 9:ArticleNo.12818.
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2019.
Is soluble protein mineralisation and protease activity in soil regulated by supply or demand? Soil Biology and Biochemistry. 150:ArticleNo.108007..
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2020.
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2019.
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.. Nucleic Acids Research. 38:265-278.
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2010.
Involvement of the chloroplast gene ferredoxin 1 in multiple responses of Nicotiana benthamiana to Potato virus X infection. Journal of Experimental Botany. 71:2142-2156.
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2020.
Involvement of the chloroplast gene ferredoxin 1 in multiple responses of N. benthamiana to Potato virus X infection. Journal of Experimental Botany. Published online..
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2020.
Investigating the behavioural and physiological indicators of neonatal survival in pigs. Theriogenology. 69:773-783. Abstract
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2008.
Investigating preference-performance relationships in aboveground-belowground life cycles: a laboratory and field study with the vine weevil (Otiorhynchus sulcatus). Bulletin of Entomological Research. 102:63-70.
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2012.
Invertebrate grazing affects nitrogen partitioning in the saprotrophic fungus Phanerochaete velutina. Soil Biology and Biochemstry. 43:2338-2346.
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2011.
An invasive Mimosa in India does not adopt the symbionts of its native relatives. Annals of Botany. 112:179-186.
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2013.
Intraspecific diversity regulates fungal productivity and respiration. PLoS ONE. 5(9):e12604.
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2010.
Interventions on democratizing infrastructure. Political Geography. 87:ArticleNo.102378.
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2021.
Interplant signalling through hyphal networks. New Phytologist. 205:1448-1453.
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2015.
Interdependency of efficient nodulation and arbuscular mycorrhization in Piptadenia gonoacantha, a Brazilian legume tree. Plant Cell and Environment. 41:2008-2020.
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2018.
The interactive responses of water quality and hydrology to changes in multiple stressors, and implications for the long-term effective management of phosphorus. Science of the Total Environment. 454:230-244.
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2013.
Interactions between fungal community structure, litter decomposition and depth of water-table in a cutover peatland. FEMS Microbiology Ecology. 64(3):433-448.
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2008.
Interactions among agricultural production and other ecosystem services delivered from European temperate grassland systems. Advances in Agronomy. 109:117-154.
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2010.
Inter-population differences in the tolerance of a marsupial folivore to plant secondary metabolites. Oecologia.. 161(3):539-548.
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2009.
Integration of juvenile habitat quality and river connectivity models to understand and prioritise the management of barriers for Atlantic salmon populations across spatial scales. Science of the Total Environment. 655:557-566.
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2019.
Integrating pests and pathogens into the climate change/food security debate. Journal of Experimental Botany. 60:2827-2838. Abstract
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2009.
Integrating hyperspectral imagery at different scales to estimate component surface temperatures. International Journal of Remote Sensing. 27:2141-2159. Abstract
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2006.
Integrating climate change mitigation into river basin management planning for the Water Framework Directive - A Danish case. Environmental Science and Policy. 55:141-150.
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2016.
Integrated cost-effectiveness analysis of agri-environmental measures for water quality. Journal of Environmental Management. 161:163-172.
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2015.
The INtegrated CAtchment model of phosphorus dynamics (INCA-P): Description and demonstration of new model structure and equations. Environmental Modelling and Software. 83:356-386.
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2016.
Insertional polymorphism and antiquity of PDR1 retrotransposon insertions in Pisum species. Genetics. 171:741-752. Abstract
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2005.
Inorganic carbon acquisition by eight species of Caulerpa (Caulerpaceae, Chlorophyta). Phycologia. 45:442-449. Abstract
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2006.
Infra-red thermography for high throughput field phenotyping in Solanum tuberosum. PLoS ONE. 8:e65816.
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2013.
Influence of precursor solvent extraction on stable isotope signatures of methylamphetamine prepared from over-the-counter medicines using the Moscow and hypophosphorous routes. Analytical and Bioanalytical Chemistry. 405:2931-2941.
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2013.
Infection of potato by Rhizoctonia solani: effect of anastomosis group. Plant Pathology. 57:897-905. Abstract
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2008.
Induced variations in Brassinosteroid genes define barley height and sturdiness, and expand the green revolution genetic toolkit. Plant Physiology. 166:1912-1927.
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2014.
The INDETERMINATE DOMAIN protein BROAD LEAF1 limits barley leaf width by restricting lateral proliferation. Current Biology. 26:903-909.
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2016.
Increasing phosphorus supply is not the mechanism by which arbuscular mycorrhiza increase attractiveness of bean (Vicia faba) to aphids. Journal of Experimental Botany. 65:5231-5241.
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2014.
In vitro life cycle of Heterodera sacchari on pluronic gel. Nematology. 21:573-579.
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2019.
Improving intercropping: a synthesis of research in agronomy, plant physiology and ecology. New Phytologist. 206:107-117.
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2015.
Improving crop mineral nutrition. Plant and Soil. 384:1-5.
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2014.
Improving breeding efficiency in blackcurrant - the application of new selection techniques in Ribes. Acta Horticulturae. 946:157-160.
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2011.
Improved models of the effects of winter chilling on blackcurrant (Ribes nigrum L.) show cultivar specific sensitivity to warm winters. Agricultural and Forest and Meteorology. 280:ArticleNo.UNSP107777.
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2020.
Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.
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2010.
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2011.
Implications of shifts in coffee production on tree species richness, composition and structure on small farms around Mount Kenya. Biodiversity and Conservation. 22:2919-2936.
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2013.
Implications of crop model ensemble size and composition for estimates of adaptation effects and agreement of recommendations. Agricultural and Forest Meteorology. 264:351-362.
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2019.
Implications of climate change for diseases, crop yields and food security. Euphytica. 179:3-18.
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2011.
Impacts of warming on the structure and functioning of aquatic communities: individual- to ecosystem-level responses. Chapter 2. Advances in Ecological Research. 47:81-176.
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2012.
Impacts of the use of nonnative commercial bumble bees for pollinator supplementation in raspberry. Journal of Economic Entomology. 104:107-114.
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2011.
Impacts of the coronavirus pandemic on biodiversity conservation. Biological Conservation. 246:ArticleNo.UNSP108571.
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2020.
Impacts of soil and water pollution on food safety and health risks in China. Environment International. 77:5-15.
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2014.
Impacts of soil and water pollution on food safety and health risks in China. Environment International. 77:5-15.
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2015.
Impacts of residence time during storage on potential of water saving for grey water recycling system. Water Research. 44(1):267-277.
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2010.
Impacts of atmospheric nitrogen deposition: responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments. Global Change Biology. 18:1197-1215.
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2012.
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2013.
Impact of predicted precipitation scenarios on multitrophic interactions. Functional Ecology. 31:1647-1658.
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2017.
Impact of plant species and atmospheric CO2 concentration on rhizodeposition and soil microbial activity and community composition. Journal of Plant Nutrition and Soil Science. 183:327-337.
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2020.
The impact of increased food availability on survival of a long-distance migratory bird. Ecology. 94:221-230.
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2013.
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2014.
Impact of high protein diets with either moderate or low carbohydrate on weight loss, body composition, blood pressure and glucose tolerance in rats. British Journal of Nutrition. 97:1099-1108. Abstract
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2007.
The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.
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2010.
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2014.
Immunological differences between susceptible and resistant sheep during the preclinical phase of scrapie infection. Journal of General Virology. 88:1384-1391. Abstract
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2007.
Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum). BMC Plant Biology. 11:147.
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2011.
Identification of quantitative trait loci for cane splitting in red raspberry (Rubus idaeus). Molecular Breeding. 31:111-122.
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2013.
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2019.
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2009.
Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies. Theoretical and Applied Genetics.. 131:1287-1297.
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2018.
Identification and microbial production of the raspberry phenol Salidroside that is active against Huntington’s Disease. Plant Physiology. 179:969-985.
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2018.
Identification and microbial production of the raspberry phenol Salidroside that is active against Huntington’s Disease. Plant Physiology. 179:969-985.
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2019.
Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics. 13:1-14.
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2012.
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2009.
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2009.
Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy. Molecular Plant Pathology. 17:286-295.
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2016.
Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes. PLoS Pathogens. 10:ArticleNo.e1004391.
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2014.
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2013.
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2014.
Hydrocarbon contamination affects deep-sea benthic oxygen uptake and microbial community composition. Deep Sea Research Part 1 - Oceanographic Research Papers. 100:79-87.
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2015.
A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome. BMC Genomics. 12:ArticleNo.594..
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2011.
Human values as catalysts and consequences of social innovations. Forest Policy and Economics. 104:33-44.
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2019.
Human colonic microbiota associated with diet, obesity and weight loss. International Journal of Obesity. 32:1720-1724.
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2008.
How well can we model stream phosphorus concentrations in agricultural catchments? Environmental Modelling and Software. 64:31-46.
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2015.
How rapid is aphid-induced signal transfer between plants via common mycelial networks? Communicative and Integrative Biology. 6:e25904.
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2013.
How old is the streamwater? Open questions in catchment transit time conceptualization, modelling and analysis Hydrological Processes. 24(12):1745-1754.
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2010.
How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY) Plant Cell and Environment.. 41:1539-1550.
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2018.
How do rootstocks control shoot water relations? New Phytologist. 194:301-303.
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2012.
Hotspots and hot moments of amino acid N in soil: real-time insights using continuous microdialysis sampling. Soil Biology and Biochemistry, 131, 40-43.. 131:40-43.
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2019.
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2015.
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2018.
Horizontal gene transfer in nematodes: a catalyst for plant parasitism? Molecular Plant-Microbe Interactions. 24:879-887.
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2011.
Horizontal gene transfer from bacteria has enabled the plant-parasitic nematode Globodera pallida to feed on plant-derived sucrose. Molecular Biology and Evolution. 33:1571-1579.
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2016.
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2005.
A homolog of Blade-On-Petiole 1 and 2 (BOP1/2) controls internode length and homeotic changes of the barley inflorescence. Plant Physiology. 171:1113-1127.
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2016.
Highlights of the mini-symposium on extracellular vesicles in inter-organismal communication, held in Munich, Germany, August 2018. Journal of Extracellular Vesicles. 8:ArticleNo.1590116.
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2019.
High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health. American Journal of Clinical Nutrition. 93:1062-1072.
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2011.
High-nature-value grasslands have the capacity to cope with nutrient impoverishment induced by mowing and livestock grazing. Journal of Applied Ecology. 52:1073-1081.
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2015.
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing. Nucleic Acids Research. 45:5061-5073.
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2017.
Hierarchical Bayesian calibration of nitrous oxide (N2O) and nitrogen monoxide (NO) flux module of an agro-ecosystem model: ECOSSE. Ecological Modelling. 316:14-27.
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2015.
The heterogeneity, distribution and environmental associations of Borrelia burgdorferi sensu lato, the agent of Lyme borreliosis, in Scotland. Frontiers in Public Health, 2, Article 129. 2
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2014.
Heat and lime treatment as an effective control method of e-coli O157:H7 in organic wastes. Bioresource Technology. 100(10):2692-2698.
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2009.
Having it all - historical energy intakes do not generate the anticipated trade-offs in fecundity. Proceedings of the Royal Society of London, B. 273(1592):1369-1374.
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2006.
Guidelines on the use of structure-from-motion photogrammetry in geomorphic research. Earth Surface Processes and Landforms. 44:2081-2084.
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2019.
GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia. 48:331-347.
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2018.
GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia. 48:331-347.
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2018.
Gradients in fracture force and grazing resistance across canopy layers in seven tropical grass species. Grass and Forage Science. 68:278-287.
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2013.
Governing integration: insights from integrating implementation of European water policies. Water. 11:ArticleNo.598.
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2019.
Glucose uptake by the brain on chronic high-protein weight-loss diets with either moderate or low amounts of carbohydrate. British Journal of Nutrition. 111:586-597.
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2014.
The Globodera pallida SPRYSEC effector GpSPRY-414-2 that suppresses plant defenses targets a regulatory component of the dynamic microtubule network. Frontiers in Plant Science. 9:ArticleNo.1019.
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2018.
Global magnesium supply in the food chain. Crop and Pasture Science. 66:1278-1289.
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2015.
A global database for metacommunity ecology, integrating species, traits, environment and space. Scientific Data. 7:1-15.
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2020.
A global collection of permanent vegetation plots. Journal of Vegetation Science. Journal of Vegetation Science. 33
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2022.
Global climate change and above-belowground insect herbivore interactions. Frontiers in Plant Science. 4:412.
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2013.
Global change effects on plant communities are magnified by time and the number of global change factors imposed. Proceedings of the National Academy of Sciences of the United States of America (PNAS). :ArticleNo.201819027.
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2019.
Global change effects on plant communities are magnified by time and the number of global change factors imposed. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 116:17867-17873.
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2019.
Global challenges facing plant pathology: multidisciplinary approaches to meet the food security and environmental challenges in the mid-21st century. CABI Agriculture and Bioscience. 2:ArticleNo.20.
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2021.
A geospatial framework to support integrated biogeochemical modelling in the United Kingdom. Environmental Modelling and Software. 68:219-232.
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2015.
The geographical patterns of symbiont diversity in the invasive legume Mimosa pudica can be explained by the competitiveness of its symbionts and by the host genotype. Environmental Microbiology. 16:2099-2111.
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2014.
Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
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2006.
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2007.
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2014.
Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars. Theoretical and Applied Genetics. 124:233-246.
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2012.
Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
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2010.
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.
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2008.
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
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2010.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
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2009.
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2016.
Genome evolution of plant-parasitic nematodes. Annual Review of Phytopathology. 55:333-354.
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2017.
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2014.
A genetic screen for plant mutants with altered nodulation phenotypes in response to rhizobial glycan mutants. New Phytologist. 220:526-538.
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2018.
Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina. Forest Pathology. 35:57-70. Abstract
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2005.
Genetic diversity in European Pisum germplasm collections. Theoretical and Applied Genetics. 125:367-380.
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2012.
Genetic diversity in caribou linked to past and future climate change. Nature Climate Change. 4:132-137.
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2013.
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2009.
Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis. Theoretical and Applied Genetics. 117:413-424.
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2008.
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2010.
Genetic diversity among Spanish pea (Pisum sativum L.) landraces, pea cultivars and the world Pisum sp. core collection assessed by retrotransposon-based insertion polymorphisms (RBIPs). Spanish Journal of Agricultural Research. 9:166-178.
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2011.
Genetic characterization of a reciprocal translocation present in a widely grown barley variety. Molecular Breeding. 30:1109-1119.
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2012.
Genetic and QTL analyses of yield and a set of physiological traits in pepper. Euphytica. 190:181-201.
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2013.
Genetic and environmental effects on tannin composition in strawberry (Fragaria x ananassa) cultivars grown in different European locations. Journal of Agricultural and Food Chemistry. 61:790-800.
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2013.
A general random walk model for the leptokurtic distribution of organism movement: theory and application. Ecological Modelling. 200:79-88. Abstract
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2007.
Genebank genomics highlights the diversity of a global barley collection. Nature Genetics.
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2019.
Genebank genomics highlights the diversity of a global barley collection. Nature Genetics.
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2019.
Gene-based sequence diversity analysis of field pea (Pisum). Genetics. 177:2263-2275. Abstract
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2007.
Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome. Molecular Plant-Microbe Interaction. 21:433-447. Abstract
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2008.
The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.
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2010.
The functional trait spectrum of European temperate grasslands. Journal of Vegetation Science. 777
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2019.
Functional roles of effectors of plant-parasitic nematodes. Gene. 492:19-31.
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2012.
Functional roles for redox genes in ethanol sensitivity in Drosophila. Functional and Integrative Genomics. 12:305-315.
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2012.
Functional C-TERMINALLY ENCODED PEPTIDE (CEP) plant hormone domains evolved de novo in the plant parasite Rotylenchulus reniformis. Molecular Plant Pathology. 17:1265-1275.
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2016.
Functional analysis of pathogenicity proteins of the potato cyst nematode Globodera rostochiensis using RNAi. Molecular Plant-Microbe Interactions. 18:621-625. Abstract
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2005.
Function of glutathione peroxidases in legume root nodules. Journal of Experimental Botany. 66:2979-2990.
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2015.
From north to south: a latitudinal look at legume nodulation processes. South African Journal of Botany. 89:31-41.
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2013.
From bits to bites: advancement of the Germinate platform to support prebreeding informatics for crop wild relatives. Crop Science. Published online.
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2021.
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2009.
A framework for valuing the health benefits of improved bathing water quality in the River Irvine catchment. Journal of Environmental Management.. 87(4):633-638.
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2008.
A framework for managing runoff and pollution in the rural landscape using a Catchment Systems Engineering approach. Science of the Total Environment. 468-469:1245-1254.
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2014.
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2014.
Forty years of reform and opening up: China's progress toward a sustainable path. Science Advances. 5:ArticleNo.eaau9413.
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2019.
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2019.
Forging future organizational leaders for sustainability science. Nature Sustainability. 2:647-649.
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2019.
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2011.
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2009.
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2016.
Flood risk management in sponge cities: the role of integrated simulation and 3D visualization. International Journal of Disaster Risk Reduction. 39:ArticleNo.101139..
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2019.
Five years of simulated atmospheric nitrogen deposition have only subtle effects on the fate of newly synthesized carbon in Calluna vulgaris and Eriophorum vaginatum. Soil Biology and Biochemistry. 43:495-502.
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2011.
Five reasons to consider Phytophthora infestans a reemerging pathogen. Phytopathology. 105:966-981.
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2015.
First report of potato cyst nematode Globodera rostochiensis, infecting potato (Solanum tuberosum) in Uganda. Plant Disease. 104:3082-3083.
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2020.
Fifty years of Biological Conservation. (Editorial). Biological Conservation. 230:A1-A4.
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2019.
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2022.
Field phenotyping of potato to assess root and shoot characteristics associated with drought tolerance. Plant and Soil. 378:351-363.
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2014.
The fetal ovary exhibits temporal sensitivity to a "real-life" mixture of environmental chemicals. Scientific Reports. 6:22279.
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2016.
The feeding tube of cyst nematodes: characterisation of protein exclusion. PLoS ONE. 9:e87289.
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2014.
Fate of carbon in upland grassland subjected to liming using in situ (CO2)-C-13 pulse-labelling. Plant and Soil. 287(1-2):301-311.
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2006.
Failure to transmit scrapie infection by transferring preimplantation embryos from naturally infected donor sheep. Theriogenology. 72:809-816.
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2009.
Faecal biomarkers can distinguish specific mammalian species in modern and past environments. PLoS ONE. 14:ArticleNo.e0211119.
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2019.
Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.
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2010.
Expression and localization of a Rhizobium-derived cambialistic superoxide dismutase in pea (Pisum sativum) nodules subjected to oxidative stress. Molecular Plant-Microbe Interactions. 24:1247-1257.
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2011.
Expressed sequence tag (EST) analysis of the pine wood nematode Bursaphelenchus xylophilus and B. mucronatus. Molecular and Biochemical Parasitology. 155:9-17. Abstract
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2007.
Exploring thermal imaging variables for the detection of stress responses in grapevine under different irrigation regimes. Journal of Experimental Botany. 58:815-825. Abstract
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2007.
Exploring temporality in socio-ecological resilience through experiences of the 2015-16 El Niño across the Tropics. Global Environmental Change - Human and Policy Dimensions. 55:1-14.
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2019.
Exploiting physical defence traits for crop protection: leaf trichomes of Rubus idaeus have deterrent effects on spider mites but not aphids. Annals of Applied Biology. 168:159-172.
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2016.
Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV. Molecular Plant-Microbe Interactions. 22:630-641.
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2009.
Exploitation of interspecific diversity for monocot crop improvement. Heredity. 110:475-483.
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2013.
Experimental evidence that feral cats cause local extirpation of small mammals in Australia's tropical savannas. Journal of Applied Ecology. 51:1486-1493.
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2014.
Evolutionary temperature compensation of carbon fixation in marine phytoplankton. Ecology Letters. 23:722-733.
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2020.
Evolutionary control of leaf element composition in plants. New Phytologist. 174:516-523. Abstract
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2007.
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2017.
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2006.
Evidence that elevated CO2 reduces resistance to the European large raspberry aphid in some raspberry cultivars. Journal of Applied Entomology. 135:237-240.
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2011.
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2012.
An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies. BMC Genomics. 13:42-42.
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2012.
Evaluating the performance of horizontal sub-surface flow constructed wetlands: a case study from southern India. Ecological Engineering Journal. 162:ArticleNo.106170.
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2021.
Evaluating energy intake measurement in free-living subjects: when to record and for how long? Public Health Nutrition. 13:172-180.
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2010.
Europe-wide dampening of population cycles in keystone herbivores. Science. 340:63-66.
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2013.
The ethylene responsive factor equired for nodulation 1 (ERN1) transcription factor is required for root nodule infection in Lotus japonicus. Molecular Plant-Microbe Interactions.. 30:194-204.
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2017.
Ethylene and carbon dioxide production by developing strawberries show a correlative pattern that is indicative of ripening climacteric fruit. Physiologia Plantarum. 127:247-259. Abstract
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2006.
Estimation of maize canopy properties from remote sensing by inversion of 1-D and 4-D models. Precision Agriculture. 11:319-334.
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2010.
Estimating stomatal conductance with thermal imagery. Plant Cell and Environment. 29:1508-1518.
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2006.
Estimating greenhouse gases emissions from horticultural peat soils using a DNDC modelling approach. Journal of Environmental Management. 233:681-694.
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2019.
Estimating agro-ecosystem carbon balance of northern Japan, and comparing the change in carbon stock by soil inventory and net biome productivity. Science of the Total Environment. 554:293-302.
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2016.
Estimates of rhizosphere priming effects are affected by soil disturbance. Geoderma. 313:1-6.
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2018.