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Mavima L, Beukes CW, Palmer M, De Meyer SE, James EK, Maluk M, Gross E, Bueno dos Reis Junior F, Avontuur JR, Chan WY et al..  2021.  Paraburkholderia youngii sp. nov. and 'Paraburkholderia atlantica' - Brazilian and Mexican Mimosa-associated rhizobia that were previously known as Paraburkholderia tuberum sv. Mimosae. Systematic and Applied Microbiology. 44:ArticleNo.126152.
Blok VC, Jones JT, Phillips MS, Trudgill DL.  2008.  Parasitism genes and host range disparities in biotrophic nematodes: the conundrum of polyphagy versus specialism. Bioessays. 30:249-259. Abstract
Arnold MFF, Haag AF, Capewell S, Boshoff HI, James EK, McDonald R, Mair I, Mitchell AM, Kerscher B, Mitchell TJ et al..  2013.  Partial complementation of Sinorhizobium meliloti bacA mutant phenotypes by the Mycobacterium tuberculosis BacA protein. Journal of Bacteriology. 195:389-398.
Blackstock KL, Dinnie L, Dilley R, Marshall K, Dunglinson J, Trench H, Harper K, Finan K, MacPherson J, Johnston E et al..  2015.  Participatory research to influence participatory governance: managing relationships with planners. Area. 47:254-260.
Liu XB, Burslem DFRP, Taylor JD, Taylor AFS, Khoo E, Majalap-Lee N, Helgason T, Johnson D.  2018.  Partitioning of soil phosphorus among arbuscular and ectomycorrhizal trees in tropical and subtropical forests. Ecology Letters. 21:713-723.
Thilliez GJA, Armstrong MR, Lim TY, Baker K, Jouet A, Ward B, van Oosterhout C, Jones JDG, Huitema E, Birch PRJ et al..  In Press.  Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist. Published online..
Thilliez GJA, Armstrong MR, Lim TY, Baker K, Jouet A, Ward B, van Oosterhout C, Jones JDG, Huitema E, Birch PRJ et al..  2019.  Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist. 221:1634-1648.
Chianini F, Siso S, Ricci E, Eaton SL, Finlayson J, Pang Y, Hamilton S, Steele P, Reid HW, Cantile C et al..  2013.  Pathogenesis of scrapie in ARQ/ARQ sheep after subcutaneous infection: Effect of lymphadenectomy and immune cell subset changes in relation to prion protein accumulation. Veterinary Immunology and Immunopathology. 152:348-358.
Winward GP, Avery LM, Stephenson T, Jeffrey P, Le Corre KS, Fewtrell L, Jefferson B.  2009.  Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
Winward GP, Avery LM, Stephenson T, Jeffrey P, Le Corre KS, Fewtrell L, Jefferson B.  2009.  Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
Fenton O, Healy MG, Brennan FP, Jahangir MMR, Lanigan GJ, Richards KG, Thornton SF, Ibrahim TG.  2014.  Permeable reactive interceptors - blocking diffuse nutrient and greenhouse gases losses in key areas of the farming landscape. Journal of Agricultural Science. 152:S71-S81.
Judge J, Davidson RS, Marion G, White PCL, Hutchings MR.  2007.  Persistence of Mycobacterium avium subspecies paratuberculosis in rabbits: the interplay between horizontal and vertical transmission. Journal of Applied Ecology. 44:302-311. Abstract
Michelena P, Jeanson R, Deneubourg JL, Sibbald AM.  2010.  Personality and collective decision-making in foraging herbivores. Proceedings of the Royal Society of London, B. 277(1684):1093-1099.
Ferretti L, Perez-Martin E, Zhang FQ, Maree F, de Klerk-Lorist LM, van Schalkwykc L, Juleff ND, Charleston B, Ribeca P.  2020.  Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid. PLoS Pathogens. 16:ArticleNo.e1008235.
Greer E, Martin AC, Pendle A, Colas I, Jones AME, Moore G, Shaw P.  2012.  The Ph1 locus suppresses Cdk2-type activity during premeiosis and meiosis in wheat. The Plant Cell. 24:152-162.
Zhou JL, Zhang ZL, Banks E, Grover D, Jiang JQ.  2009.  Pharmaceutical residues in wastewater treatment works effluents and their impact on receiving river water. Journal of Hazardous Materials.. 166(2-3):655-661.
Vagiri M, Conner S, Stewart D, Andersson SC, Verrall S, Johansson E, Rumpunen K.  2008.  Phenolic compounds in blackcurrant (Ribes nigrum L.) leaves relative to leaf position and harvest date. Food Chemistry. 172:135-142.
Vagiri M, Conner S, Stewart D, Andersson SC, Verrall S, Johansson E, Rumpunen K.  2015.  Phenolic compounds in blackcurrant (Ribes nigrum L.) leaves relative to leaf position and harvest date. Food Chemistry. 172:135-142.
Burthe S, Daunt F, Butler A, Elston DA, Frederiksen M, Johns D, Newell M, Thackeray SJ, Wanless S.  2012.  Phenological trends and trophic mismatch across multiple levels of a North Sea pelagic food web. International Journal of Plant Genomics. 454:119-133.
Vetukuri RR, Asman AKM, Jahan SN, Avrova AO, Whisson SC, Dixelius C.  2013.  Phenotypic diversification by gene silencing in Phytophthora plant pathogens. Communicative and Integrative Biology. 6:e25890.
McIntosh FM, Maison N, Holtrop G, Young P, Stevens VJ, Ince J, Johnstone AM, Lobley GE, Flint HJ, Louis P.  2012.  Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
Khairnar M, Hagir A, Parmar K, Sayyed RZ, James EK, Rahi P.  2022.  Phylogenetic diversity and plant growthpromoting activities of rhizobia nodulating fenugreek (Trigonella foenumgraecum Linn) cultivated in different agroclimatic regions of India. FEMS Microbiology Ecology.
McMinn D, Oreskovic NM, Aitkenhead MJ, Johnston DW, Murtagh S, Rowe DA.  2014.  The physical environment and health-enhancing activity during the school commute: global positioning system, geographical information systems and accelerometry. Geospatial Health. 8:569-572.
Bjorkman M, Klingen I, Birch ANE, Bones AM, Bruce T, Johansen T, Meadow R, Molmann J, Selijasen R, Smart L et al..  2011.  Phytochemicals of Brassicaceae in plant protection and human health - influences of climate, environment and agronomic practice. Phytochemistry. 72:538-556.
Rubio MC, Calvo-Begueria L, Diaz-Mendoza M, Elhiti M, Moore M, Matamoros MA, James EK, Diaz I, Perez-Rontome C, Villar I et al..  2019.  Phytoglobins in the nuclei, cytoplasm and chloroplasts modulate nitric oxide signaling and interact with abscisic acid. The Plant Journal. Published online..
Ginetti B, Moricca S, Squires JN, Cooke DEL, Ragazzi A, Jung T.  2014.  Phytophthora acerina sp. nov., a new species causing bleeding cankers and dieback of Acer pseudoplatanus trees in planted forests in northern Italy. Plant Pathology. 63:858-876.
Jupe J, Stam R, Howden AJM, Morris JA, Zhang R, Hedley PE, Huitema E.  2013.  Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle. Genome Biology. 14:R63.
van Poppel PMJA, Guo J, van de Vondervoort PJI, Jung MWM, Birch PRJ, Whisson SC, Govers F.  2008.  The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector. Molecular Plant-Microbe Interactions. 21:1460-1470. Abstract
Abad ZG, Abad JA, Cacciola SO, Pane A, Faedda R, Moralejo E, Perez-Sierra A, Abad-Campos P, Alvarez-Bernaola LA, Bakonyi J et al..  2014.  Phytophthora niederhauserii sp. nov., a polyphagous species associated with ornamentals, fruit trees and native plants in 13 countries. Mycologia. 106:431-447.
Malolepszy A, Kelly S, Sorensen KK, James EK, Kalisch C, Bozsoki Z, Panting M, Andersen SU, Sato S, Tao K et al..  2018.  A plant chitinase controls cortical infection thread progression and nitrogen-fixing symbiosis. ELIFE. 7:ArticleNo.e38874.
Johnson D, Anderson IC, Williams A, Whitlock R, Grime J.  2010.  Plant genotypic diversity does not beget root-fungal species diversity. Plant and Soil. 336(1-2):107-111.
Sainz M, Perez-Rontome C, Ramos J, Mulet J, James E, Bhattacharjee U, Petrich J, Becana M.  2013.  Plant hemoglobins can be maintained in functional form by reduced flavins in the nuclei and confer differential tolerance to nitro-oxidative stress. The Plant Journal. 76:875-887.
Jaouannet M, Rodriguez PA, Thorpe P, Lenoir CJG, MacLeod R, Escudero-Martinez C, Bos JIB.  2014.  Plant immunity in plant-aphid interactions. Frontiers in Plant Science. 5
Turner TR, James EK, Poole P.  2013.  The plant microbiome. Genome Biology. 14:209.
Jiang LL, Lu YW, Zheng XY, Yang X, Chen Y, Zhang TH, Zhao X, Wang S, Zhao X, Song XJ et al..  2021.  The plant protein NbP3IP directs degradation of Rice stripe virus p3 silencing suppressor protein to limit virus infection through interaction with the autophagy-related protein NbATG8. New Phytologist. 229:1036-1051.
Gilbert L, Johnson D.  2015.  Plant-mediated 'apparent effects' between mycorrhiza and insect herbivores. Current Opinion in Plant Biology. 26:100-105.
Aslam TJ, Johnson SN, Karley AJ.  2013.  Plant-mediated effects of drought on aphid population structure and parasitoid attack rates. Journal of Applied Entomology. 137:136-145.
Johnson SN, Staley JT, McLeod FAL, Hartley SE.  2011.  Plant-mediated effects of soil invertebrates and summer drought on above-ground multitrophic interactions. Journal of Ecology. 99:57-65.
Eves-van den Akker S, Lilley CJ, Jones JT, Urwin PE.  2009.  Plant-parasitic nematode feeding tubes and plugs: new perspectives on function. Nematology. 17:1-9.
Eves-van den Akker S, Lilley CJ, Jones JT, Urwin PE.  2015.  Plant-parasitic nematode feeding tubes and plugs: new perspectives on function. Nematology. 17:1-9.
Gilbert L, Johnson D.  2017.  Plant-plant communication through common mycorrhizal networks. Advances in Botanical Research. 82:83-97.
Zhang XG, McGeoch SC, Johnstone AM, Holtrop G, Sneddon AA, MacRury SM, Megson IL, Pearson DWM, Abraham P, de Roos B et al..  2014.  Platelet-derived microparticle count and surface molecule expression differ between subjects with and without type 2 diabetes, independently of obesity status. Journal of Thrombosis and Thrombolysis. 37:455-463.
Whybrow S, Stubbs RJ, Johnstone AM, O'Reilly LM, Fuller Z, Livingstone MBE, Horgan GW.  2016.  Plausible self-reported dietary intakes in a residential facility are not necessarily reliable. European Journal of Clinical Nutrition. 70:130-135.
Blackstock KL, Novo P, Byg A, Creaney R, Juarez Bourke A, Maxwell JL, Tindale SJ, Waylen KA.  2021.  Policy instruments for environmental public goods: interdependencies and hybridity. Land Use Policy. 104:ArticleNo.104709.
Waylen KA, Blackstock KL, van Hulst F, Damian C, Horváth F, Johnson RK, Kanka R, Külvik M, Macleod CJA, Meissner K et al..  2019.  Policy-driven monitoring and evaluation: does it support adaptive management of socio-ecological systems? Science of the Total Environment. 662:373-384.
Breeze TD, Bailey AP, Balcombe KG, Brereton T, Comont R, Edwards M, Garratt MP, Harvey M, Hawes C, Isaac N et al..  2020.  Pollinator monitoring more than pays for itself. Journal of Applied Ecology.
Breeze TD, Bailey AP, Balcombe KG, Brereton T, Comont R, Edwards M, Garratt MP, Harvey M, Hawes C, Isaac N et al..  2021.  Pollinator monitoring more than pays for itself. Journal of Applied Ecology. 58:44-57.
Ollerton J, Trunschke J, Havens K, Landaverde-González P, Keller A, Gilpin A, Rech A, Baronio G, Phillips B, Mackin C et al..  2022.  Pollinator-flower interactions in gardens during the COVID19 pandemic lockdown of 2020. Journal of Pollination Ecology.
Veronico P, Melillo MT, Saponaro C, Leonetti P, Picardi E, Jones JT.  2011.  A polygalacturonase-inhibiting protein with a role in pea defence against the cyst nematode Heterodera goettingianna. Molecular Plant Pathology. 12:275-287.
Dahlawi H, Jordan-Mahy N, Clench M, McDougall GJ, Le Maitre CL.  2013.  Polyphenols are responsible for the pro-apoptotic properties of pemegranate juice on leukemia cell lines. Food Science & Nutrition. 1:196-208.
Czachor H, Hallett PD, Lichner L, Jozefaciuk G.  2013.  Pore shape and organic compounds drive major changes in the hydrological characteristics of agricultural soils. European Journal of Soil Science. 64:334-344.
Jiang R, Li JC, Tian ZD, Du J, Armstrong M, Baker K, Lim JTY, Vossen JH, He H, Portal L et al..  2018.  Potato late blight field resistance from QTL dPI09c is conferred by the NB-LRR gene R8. Journal of Experimental Botany. 69:1545-1555.
Cowan GH, Roberts AG, Jones S, Kumar P, Kalyandurg PB, Gil JF, Savenkov EI, Hemsley PA, Torrance L.  2018.  Potato mop-top virus co-opts the stress sensor HIPP26 for long-distance movement. Plant Physiology. 176:2052-2070.
Ross HA, Wright KM, McDougall GJ, Roberts AG, Chapman SN, Morris WL, Hancock RD, Stewart D, Tucker GA, James EK et al..  2011.  Potato tuber pectin structure is influenced by pectin methyl esterase activity and impacts on cooked potato texture. Journal of Experimental Botany. 62:371-381.
Artz RRE, Johnson S, Bruneau P, Britton AJ, Mitchell RJ, Ross L, Donaldson-Selby G, Donnelly D, Aitkenhead MJ, Gimona A et al..  2019.  The potential for modelling peatland habitat condition in Scotland using long-term MODIS data. Science of the Total Environment. 660:429-442.
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2009.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2008.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25(1):66-77.
Boldrin D, Leung AK, Bengough AG, Jones HG.  2019.  Potential of thermal imaging in soil bioengineering to assess plant ability for soil water removal and air cooling. Ecological Engineering. 141:ArticleNo.105599.
Artz RRE, Avery LM, Jones DL, Davey L, Killham K.  2006.  Potential pitfalls in the quantitative molecular detection of escherichia coli O157:H7 in environmental matrices. Canadian Journal of Microbiology. 52(5):482-488.
Jones HG, Hutchinson PA, May T, Jamali H, Deery DM.  2018.  A practical method using a network of fixed infrared sensors for estimating crop canopy conductance and evaporation rate. Biosystems Engineering. 165:59-69.
Agu RC, Swanston JS, Walker JW, Pearson SY, Bringhurst TA, Brosnan JM, Jack FR.  2009.  Predicting alcohol yield from UK soft winter wheat for grain distilling: combined influence of hardness and nitrogen measurements. Journal of the Institute of Brewing. 115:183-190.
Hollis JM, Lilly A, Higgins A, Jones RJA, Keay CA, Bellamy P.  2015.  Predicting the water retention characteristics of UK soils. European Journal of Soil Science. 66:239-252.
Hudson LN, Newbold T, Contu S, Hill SLL, Lysenko I, De Palma A, Phillips HRP, Senior RA, Bennett DJ, Booth H et al..  2014.  The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts. Ecology and Evolution. 4:4701-4735.
Boone C, Pickett S, Bammer G, Bawa K, Dunne J, Gordon IJ, Hart D, Hellmann J, Miller A, New M et al..  2020.  Preparing interdisciplinary leadership for a sustainable future. Sustainability Science..
Coyle DR, Clark KE, Raffa KF, Johnson SN.  2011.  Prior host feeding experience influences ovipositional but not feeding preference in a polyphagous insect herbivore. Entomologia Experimentalis et Applicata. 138:137-145.
Zheng CZ, Voorrips RE, Jansen J, Hackett CA, Ho JL, Bink MCAM.  2016.  Probabilistic multilocus haplotype reconstruction in outcrossing tetraploids. Genetics. 203:119-131.
Jones AT, Cowan GH, McGavin WJ, Roberts IM, Torrance L.  2005.  Production and properties of monoclonal antibodies to Solanum nodiflorum mottle sobemovirus. Annals of Applied Biology. 146:321-325. Abstract
Patras MA, Jaiswal R, McDougall GJ, Kuhnert N.  2018.  Profiling and quantification of regioisomeric caffeoyl glucoses in berry fruits. Journal of Agricultural and Food Chemistry. 66:1096-1104.
Johnson SN, Petitjean S, Clark KE, Mitchell C.  2010.  Protected raspberry production accelerates onset of oviposition by vine weevils (Otiorhynchus sulcatus). Agricultural and Forest Entomology. 12:277-283.
Johnson SN, Young MW, Karley AJ.  2012.  Protected raspberry production alters aphid-plant interactions but not aphid population size. Agricultural and Forest Entomology. 14:217-224.
Bengtsson T, Weighill D, Proux-Wera E, Levander F, Resjo S, Burra DD, Moushib LI, Hedley PE, Liljeroth E, Jacobson D et al..  2014.  Proteomics and transcriptomics of BABA-induced resistance response in potato using a novel functional annotation approach. BMC Genomics. 15
Jin XB, Robinson K, Lee A, Polhill JG, Pritchard C, Parker DC.  2017.  A prototype cloud-based reproducible data analysis and visualization platform for outputs of agent-based models. Environmental Modelling and Software. 96:172-180.
Jones AT, McGavin WJ, Gepp V, Zimmerman MT, Scott SW.  2006.  Purification and properties of blackberry chlorotic ringspot, a new virus species in subgroup 1 of the genus Ilarvirus found naturally infecting blackberry in the UK. Annals of Applied Biology. 149:125-135. Abstract
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Roumet C, Cochard C, Dawson LA, Joffre R, Mayes RW, Brewer M, Blanchard M.  2006.  Quantifying species composition in root mixtures using two methods: near-infrared reflectance spectroscopy and plant wax markers. New Phytologist. 170(3):631-638.
Harrison PJ, Yuan Y, Buckland ST, Oedekoven CS, Elston DA, Brewer MJ, Johnston A, Pearce-Higgins JW.  2015.  Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
Harrison PJ, Yuan Y, Buckland ST, Oedekoven CS, Elston DA, Brewer MJ, Johnston A, Pearce-Higgins JW.  2016.  Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
Vinuela-Fernandez I, Jones E, McKendrick IJ, Molony V.  2011.  Quantitative assessment of increased sensitivity of chronic laminitic horses to hoof tester evoked pain. Equine Veterinary Journal. 43:62-68.
Jeong GY, Hillier S, Kemp RA.  2008.  Quantitative bulk and single-particle mineralogy of a thick Chinese loess-paleosol section: implications for loess provenance and weathering. Quaternary Science Reviews. 27(11-12):1271-1287.
Phillips D, Wnetrzak J, Nibau C, Barakate A, Ramsay L, Wright F, Higgins JD, Perry RM, Jenkins G.  2013.  Quantitative high resolution mapping of HvMLH3 foci in barley pachytene nuclei reveals a strong distal bias and weak interference. Journal of Experimental Botany. 64:2139-2154.
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Jarvis SG, Holden EM, Taylor AFS.  2017.  Rainfall and temperature effects on fruit body production by stipitate hydnoid fungi in Inverey Wood, Scotland. Fungal Ecology. 27:137-140.
McGeoch SC, Johnstone AM, Lobley GE, Adamson J, Hickson K, Holtrop G, Fyfe C, Clark LF, Pearson DWM, Abraham P et al..  2013.  A randomized crossover study to assess the effect of an oat-rich diet on glycaemic control, plasma lipids and postprandial glycaemia, inflammation and oxidative stress in Type 2 diabetes. Diabetic Medicine. 30:1314-1323.
Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, Panter PE, Knight H, Nimmo HG, Zhang RX, Brown JWS.  2018.  Rapid and dynamic alternative splicing impacts the arabidopsis cold response transcriptome. Plant Cell..
Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, Panter PE, Knight H, Nimmo HG, Zhang RX, Brown JWS.  2018.  Rapid and dynamic alternative splicing impacts the arabidopsis cold response transcriptome. Plant Cell. 30:1424-1444.
Tzin V, Hojo Y, Strickler SR, Bartsch LJ, Archer CM, Ahern KR, Zhou S, Christensen SA, Galis I, Mueller LA et al..  2017.  Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding. Journal of Experimental Botany. 68:4709-4723.
McMenemy LS, Hartley SE, MacFarlane SA, Karley AJ, Shepherd T, Johnson SN.  2012.  Raspberry viruses manipulate the behaviour of their insect vectors. Entomologia Experimentalis et Applicata. 144:56-68.
Critchley CNR, Mitchell RJ, Rose RJ, Griffiths JB, Jackson E, Scott H, Davies OD.  2013.  Re-establishment of Calluna vulgaris (L.) Hull in an eight-year grazing experiment on upland acid grassland. Journal of Nature Conservation. 21:22-30.
Johnson SN, Hawes C, Karley AJ.  2009.  Reappraising the role of plant nutrients as mediators of interactions between root- and foliar-feeding insects. Functional Ecology. 23:699-706. Abstract
Jones CM, Spor A, Brennan FP, Breuol MC, Bru D, Lemanceau P, Griffiths B, Hallin S, Philppot L.  2014.  Recently identified microbial guild mediates soil N2O sink capacity. Nature Climate Change. 4:801-805.
Grelet GA, Johnson D, Paterson E, Anderson IC, Alexander IJ.  2009.  Reciprocal carbon and nitrogen transfer between an ericaceous dwarf shrub and fungi isolated from Piceirhiza bicolorata ectomycorrhizas. New Phytologist. 182(2):359-366.
McKenzie SW, Vanbergen AJ, Hails RS, Jones TH, Johnson SN.  2013.  Reciprocal feeding facilitation between above- and below-ground herbivores. Biology Letters. 9
Vega-Arreguin JC, Jalloh A, Bos JI, Moffett P.  2014.  Recognition of an Avr3a homologue plays a major role in mediating nonhost resistance to Phytophthora capsici in Nicotiana species. Molecular Plant Microbe Interactions. 27:770-780.
Jayakody S, Sibbald AM, Lambin X, Gordon IJ.  2008.  Red deer (Cervus elaphus) vigilance behaviour differs according to human disturbance type and habitat. Wildlife Biology. 14:81-91.
Kay D, Aitken M, Crowther J, Dickson I, Edwards AC, Francis C, Hopkins M, Jeffrey W, Kay C, McDonald MDATD et al..  2007.  Reducing fluxes of faecal indicator compliance parameters to bathing waters from diffuse agricultural sources: The Brighouse Bay study, Scotland. Environmental Pollution. 147(1):138-149.
Jarvis S, Woodward S, Alexander IJ, Taylor AFS.  2013.  Regional scale gradients of climate and nitrogen deposition drive variation in ectomycorrhizal fungal communities associated with native Scots pine. Global Change Biology. 19:1688-1696.
Simpson CG, Manthri S, Raczynska KD, Kalyna M, Lewandowska D, Kusenda B, Maronova M, Szweykowska-Kulinska Z, Jarmolowski A, Barta A et al..  2010.  Regulation of plant gene expression by alternative splicing. Biochemical Society Transactions. 38:667-671.
Coutinho BG, Mitter B, Talbi C, Sessitsch A, Bedmar E, Halliday N, James EK, Camara M, Venturi V.  2013.  Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. Applied and Environmental Microbiology. 79:4421-4432.
Hall NM, Griffiths H, Corlett JA, Jones HG, Lynn J, King GJ.  2005.  Relationships between water-use traits and photosynthesis in Brassica oleracea resolved by quantitative genetic analysis. Plant Breeding. 124:557-564. Abstract
Unkovich M, Herridge D, James EK, Giller K, Peoples MB.  2020.  Reliable quantification of N-2 fixation by non-legumes remains problematic. Nutrient Cycling in Agroecosystems. Published online..
Jones HG.  2014.  Remote sensing of plant stresses and its use in irrigation management. Acta Horticulturae. 1038:239-247.
Bradford MA, Wood SA, Bardgett RD, Black HIJ, Bonkowski M, Eggers T, Grayston SJ, Kandeler E, Manning P, Setala H et al..  2014.  Reply to Byrnes et al.: Aggregation can obscure understanding of ecosystem multifunctionality. Proceedings of the National Academy of Sciences of the United States of America. 111:E5491-E5491.
Benaud P, Anderson K, Evans M, Farrow L, Glendell M, James MR, Quine TA, Quinton JN, Rickson RJ, Brazier RE.  2021.  Reproducibility, open science and progression in soil research. A reply to "Response tot 'National-scale geodata describe widespread accelerated soil erosion' Benaud et al. (2020) Geoderma 271, 114378" by Evans and Boardman (2021). Geoderma. 402:ArticleNo.115181.
Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, MacLean D, Cock PJ, Leggett RM, Bryan GJ et al..  2013.  Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. Plant Journal. 76:530-544.
Stasik O, Jones HG.  2007.  Response of photosynthetic apparatus to moderate high temperature in contrasting wheat cultivars at different oxygen concentrations. Journal of Experimental Botany. 58:2133-2143. Abstract
Crawfurd KJ, Raven JA, Wheeler GL, Baxter EJ, Joint I.  2011.  The response of Thalassiosira pseudonana to long-term exposure to increased CO2 and decreased pH. PLoS ONE. 6:e26995.
Fisher DO, Johnson CN, Lawes MJ, Fritz SA, McCallum H, Blomberg SP, van der Wal J, Abbott B, Frank A, Legge S et al..  2015.  Response to commentary by Woinarski (Critical-weight-range marsupials in northern Australia are declining: a commentary on Fisher et al. (2014) 'The current decline of tropical marsupials in Australia: is history repeating?') Global Ecology and Biogeography. 24:123-125.
Lobley GE, Holtrop G, Horgan GW, Bremner DM, Fyfe C, Johnstone AM.  2015.  Responses in gut hormones and hunger to diets with either high protein or a mixture of protein plus free amino acids supplied under weight-loss conditions. British Journal of Nutrition. 113:1254-1270.
Ghimire SK, Jones G.  2014.  Restoration of a gauging weir to aid fish passage. Journal of Hydro-Environment Research. 8:43-49.
Schulte RPO, Fealy R, Creamer RE, Towers W, Harty T, Jones RJA.  2012.  A review of the role of excess soil moisture conditions in constraining farm practices under Atlantic conditions. Soil Use and Management. 28:580-589.
Saunders MJ, Kansiime F, Jones MB.  2014.  Reviewing the carbon cycle dynamics and carbon sequestration potential of Cyperus papyrus L. wetlands in tropical Africa. Wetlands Ecology and Management. 22:143-155.
Mitra S, Mukherjee A, Wiley-Kalil A, Das S, Owen H, Reddy PM, Ane JM, James EK, Gyaneshwar P.  2016.  A rhamnose-deficient lipopolysaccharide mutant of Rhizobium sp. IRBG74 is defective in root colonization and beneficial interactions with its flooding-tolerant hosts Sesbania cannabina and wetland rice. Journal of Experimental Botany. 67:5869-5884.
Deng WN, Iannetta PPM, Hallett PD, Toorop PE, Squire GR, Jeng DS.  2013.  The rheological properties of the seed coat mucilage of Capsella bursa-pastoris L. Medik. (shepherd's purse). Biorheology. 50:57-67.
Tan HW, Weir BS, Carter N, Heenan PB, Ridgway HJ, James EK, Sprent JI, Young JPW, Andrews M.  2012.  Rhizobia with 16S rRNA and nifH similar to Mesorhizobium huakuii but Novel recA, glnII, nodA and nodC genes are symbionts of New Zealand Carmichaelinae. PLoS ONE, e47677. 7
Barauna AC, Rouws LFM, Simoes-Araujo JL, Dos Reis Junior FB, Iannetta PPM, Maluk M, Goi SR, Reis VM, James EK, Zilli JE.  2016.  Rhizobium altiplani sp. nov. isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in Central Brazil. International Journal of Systematic and Evolutionary Microbiology. 66:1-7.
Smith HM, Blackstock KL, Wall G, Jeffrey P.  2014.  River basin management, development planning, and opportunities for debate around limits to growth. Journal of Hydrology. 519:2624-2631.
Jones S, Cowan G, MacFarlane S, Mukoye B, Mangeri BC, Were H, Torrance L.  2020.  RNA sequence analysis of diseased groundnut (Arachis hypogaea) reveals the full genome of groundnut rosette assistor virus (GRAV). Virus Research. 277:ArticleNo.197837.
Rosso MN, Jones JT, Abad P.  2009.  RNAi and functional genomics in plant parasitic nematodes. Annual Review of Phytopathology. 47:207-232.
Wang MH, Wang L, Jiang N, Jia TY, Luo ZW.  2013.  A robust and efficient statistical method for genetic association studies using case and control samples from multiple cohorts. BMC Genomics. 14:Article88.
Jiang N, Wang MH, Jia TY, Wang L, Leach L, Hackett CA, Marshall DF, Luo ZW.  2011.  A robust statistical method for association-based eQTL analysis. PLoS ONE. 6:e23192.
James EK, Baldani JI.  2012.  The role of biological nitrogen fixation by non-legumes in the sustainable production of food and biofuels. Plant and Soil. 356:1-3.
Helliwell RC, Coull MC, Evans CD, Davies JJL, Norris D, Ferrier RC, Jenkins A, Reynolds B.  2007.  The role of catchment characteristics in determining surface water nitrogen in four upland regions in the UK. Hydrology and Earth System Sciences. 11(1):356-371.
Jones JT, Furlanetto C, Phillips M.  2007.  The role of flavonoids produced in response to cyst nematode infection of Arabidopsis thaliana. Nematology. 9:671-677. Abstract
Mitra S, Mukherjee A, Wiley-Kalil A, Das S, Owen H, Reddy PM, Ane JM, James EK, Gyaneshwar P.  2016.  Role of lipopolysaccharide and biofilm formation during endophytic colonization of rice (Oryza sativa L.) and nodulation of Sesbania cannabina by Rhizodium sp. IRBG74. Journal of Experimental Botany. 67:5869-5884.
Field C, Dise NB, Payne RJ, Britton AJ, Emmett BA, Helliwell RC, Hughes S, Jones L, Lees S, Leake JR et al..  2014.  The role of nitrogen deposition in widespread plant community change across semi-natural habitats. Ecosystems. 17:864-877.
Beauchamp E, Moskeland A, Milner-Gulland EJ, Hirons M, Ruli B, Byg A, Dougill AJ, Jew E, Keane A, Malhi Y et al..  2019.  The role of quantitative cross-case analysis in understanding tropical smallholder farmers’ adaptive capacity to climate shocks. Environmental Research Letters. 14:ArticleNo.125013..
Young JC, Searle K, Butler A, Simmons P, Watt AD, Jordan A.  2016.  The role of trust in the resolution of conservation conflicts. Biological Conservation. 195:196-202.
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Robertson-Albertyn S, Terrazas RA, Balbirnie K, Blank M, Janiak A, Szarejko I, Chmielewska B, Karcz J, Morris J, Hedley PE et al..  2017.  Root hair mutations displace the barley rhizosphere microbiota. Frontiers in Plant Science.. 8:ArticleNo.1094.
McKenzie SW, Johnson SN, Jones TH, Ostle NJ, Hails RS, Vanbergen AJ.  2016.  Root herbivores drive changes to plant primary chemistry, but root loss is mitigated under elevated atmospheric CO2. Frontiers in Plant Science. 7
Smith SW, Woodin SJ, Pakeman RJ, Johnson D, van der Wal R.  2014.  Root traits predict decomposition across a landscape-scale grazing experiment. New Phytologist. 2013:851-862.
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van Rees CB, Waylen KA, Schmidt-Kloiber A, Thackeray SJ, Kalinkat G, Martens K, Domisch S, Lillebø AI, Hermoso V, Grossert HP et al..  2021.  Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience. Conservation Letters. 14:ArticleNo.e12771.
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Nesshöver C, Assmuth T, Irvine KN, Rusch GM, Waylen KA, Delbaere B, Haase D, Jones-Walters L, Keune H, Kovacs E et al..  2017.  The science, policy and practice of nature-based solutions: an interdisciplinary perspective. Science of the Total Environment. 579:1215-1227.
Varypatakis K, Jones JT, Blok VC.  2019.  Screening of populations of Globodera pallida selected for increased virulence on several potato varieties. Nematology. 21:995-998.
Albert A, Auffret AG, Cosyns E, Cousins SAO, D'Hondt B, Eichberg C, Eycott AE, Heinken T, Hoffmann M, Jaroszewicz B et al..  2015.  Seed dispersal by ungulates as an ecological filter: a trait-based meta-analysis. Oikos. 124:1109-1120.
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Juedtz K, Aberdein N, Stewart D, McDougall GJ.  2013.  Sequential extraction of black currant residues produce anthocyanin-rich extracts containing anthocyanin dimers. Journal of Berry Research. 3:53-64.
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Raczynska KD, Stepien A, Kierzkowski D, Kalak M, Bajczyk M, McNicol J, Simpson CG, Szweykowska-Kulinska Z, Brown JWS, Jarmolowski A.  2020.  The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana (vol 42, 1224, 2014). Correction. Nucleic Acids Research. 48:1604-1605.
Eves-van den Akker S, Jones JT.  2018.  Sex: not all that it’s cracked up to be? PLoS Genetics. 14:ArticleNo.e1007160..
Jin KM, White PJ, Whalley WR, Shen JB, Shi L.  2017.  Shaping an optimal soil by root-soil interaction. Trends in Plant Science. 22:823-829.
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Jones MR, Raven JA, Leith ID, Cape JN, Smith RI, Fowler D.  2008.  Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology. 148:893-901. Abstract
Pokhare SS, Thorpe P, Hedley P, Morris J, Habash SS, Elashry A, Eves-van den Akker S, Grundler FMW, Jones JT.  2020.  Signatures of adaptation to a monocot host in the plant-parasitic cyst nematode Heterodera sacchari. Plant Journal. 103:1263-1274.
Bird DM, Jones JT, Opperman CH, Kikuchi T, Danchin EGJ.  2015.  Signatures of adaptation to plant parasitism in nematode genomes. Parasitology. 142:S71-S84.
Wang G, Jin Z, Wang X, George TS, Feng G, Zhang L.  2021.  Simulated root exudates stimulate the abundance of Saccharimonadales to improve the potential of organic phosphorus mobilization in maize rhizosphere. Applied Soil Ecology. 170:ArticleNo.104274.
Wang G, Jin Z, Wang X, George TS, Feng G, Zhang L.  2021.  Simulated root exudates stimulate the abundance of Saccharimonadales to improve the potential of organic phosphorus mobilization in maize rhizosphere. Applied Soil Ecology. 170:ArticleNo.104274.
Wang G, Jin Z, Wang X, George TS, Feng G, Zhang L.  2021.  Simulated root exudates stimulate the abundance of Saccharimonadales to improve the potential of organic phosphorus mobilization in maize rhizosphere. Applied Soil Ecology. 170:ArticleNo.104274.
Aherne J, Helliwell RC, Lilly A, Ferrier RC, Jenkins A.  2007.  Simulation of soil and surface water acidification: Divergence between one-box and two-box models? Applied Geochemistry. Special Issue on Acid Rain2005, 7th International Conference on Acid Deposition, June 12-17th 2005, Prague, Czech Republic.. 22(6):1167-1173.
Velikova V, Edreva AM, Tsonev T, Jones HG.  2007.  Singlet oxygen quenching by phenylamides and their parent compounds. Zeischrift f. 62c:833-838.
Sarkki S, Jokinen M, Nijnik M, Zahvoyska L, Abraham EM, Alados CL, Bellamy C, Bratanova-Dontcheva S, Grunewald K, Kollar J et al..  2017.  Social equity in governance of ecosystem services: synthesis from European treeline areas. Climate Research. 73:31-44.
Sarkki S, Jokinen M, Nijnik M, Zahvoyska L, Abraham EM, Alados CL, Bellamy C, Bratanova-Dontcheva S, Grunewald K, Kollar J et al..  2017.  Social equity in governance of ecosystem services: synthesis from European treeline areas. Climate Research. 73:31-44.
Habtom H, Demaneche S, Dawson LA, Azulay C, Matan O, Robe P, Gafny R, Simonet P, Jurkevitch E, Pasternak Z.  2016.  Soil characterisation by bacterial community analysis for forensic applications: a quantitative comparison of environmental technologies. Forensic Science International. 26:21-29.
Habtom H, Demaneche S, Dawson LA, Azulay C, Matan O, Robe P, Gafny R, Simonet P, Jurkevitch E, Pasternak Z.  2017.  Soil characterisation by bacterial community analysis for forensic applications: a quantitative comparison of environmental technologies. Forensic Science International. 26:21-29.
Pires RD, dos Reis FB, Zilli JE, Fischer D, Hofmann A, James EK, Simon MF.  2018.  Soil characteristics determine the rhizobia in association with different species of Mimosa in central Brazil. Plant and Soil. 423:411-428.
Kritzler UH, Artz RRE, Johnson D.  2016.  Soil CO2 efflux in a degraded raised bog is regulated by water table depth rather than recent plant assimilate. Mires and Peat. 17:1-14.
Arrouays D, Leenaars JGB, Richer-de-Forges A, Adhikari K, Ballabio C, Greve M, Grundy M, Guerrero E, Hempel J, Hengl T et al..  2017.  Soil legacy data rescue via GlobalSoilMap and other international and national initiatives. GeoResJ. 14:1-19.
Chen ZM, Wang Q, Ma JW, Chapman S, Zou P, Ye J, Yu QG, Sun WC, Lin H, Jiang LN.  2020.  Soil microbial activity and community composition as influenced by application of pig biogas slurry in paddy field in southeast China. Paddy and Water Environment. 18:15-25.
Cheng YH, Jiang Y, Wu Y, Valentine TA, Li HX.  2016.  Soil nitrogen status modifies rice root response to nematode-bacteria interactions in the rhizosphere. PLoS ONE. 11
Nemo, Klumpp K, Coleman K, Dondini M, Goulding K, Hastings A, Jones MB, Leifeld J, Osborne B, Saunders M et al..  2017.  Soil organic carbon (SOC) equilibrium and model initialisation methods: an application to the Rothamsted carbon (RothC) model. Environmental Modeling and Assessment. 22:215-239.
Jilkova V, Jandova K, Sim A, Thornton B, Paterson E.  2019.  Soil organic matter decomposition and carbon sequestration in temperate coniferous forest soils affected by soluble and insoluble spruce needle fractions. Soil Biology and Biochemistry. 138:ArticleNo.107595.
Jensen OP, Barbara BJ, Magnuson JJ, Card VM, Futter MN, Soranno PA, Stewart KM.  2007.  Spatial analysis of ice phenology trends across the Laurentian Great Lakes region during a recent warming period. Limnology and Oceanography. 52:2013-2026.
Helliwell RC, Davies JJL, Jenkins A, Evans CD, Coull MC, Reynolds B, Norris D, Ferrier RC.  2007.  Spatial and seasonal variations in nitrogen leaching and acidity across four acid-impacted regions of the UK. Water, Air and Soil Pollution. 185(1-4):3-19.
Weigang Y, Artz RRE, Johnson D.  2008.  Species-specific effects of plants colonising cut-over peatlands on patterns of carbon source utilisation by soil microorganisms. Soil Biology and Biochemistry. 40(2):544-549.
Ki LP, Felber F, Flavell AJ, Guadagnuolo R, Guiatti D, Hauser TP, Olivieri AM, Scotti I, Syed NH, Vischi M et al..  2009.  Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
Nisbet AJ, Redmond DL, Matthews JB, Watkins C, Yaga R, Jones JT, Nath M, Knox DP.  2008.  Stage-specific gene expression in Teladorsagia circumcincta (Nematoda: Strongylida) infective larvae and early parasitic stages. International Journal for Parasitology. 38:829-838. Abstract
Cerm J, Gasp J, De Lorenzi F, Jones HG.  2007.  Stand biometry and leaf area distribution in an old olive grove at Andria, southern Italy. Annals of Forest Science. 64:491-501. Abstract
Garnier E, Ansquer P, Castro H, Cruz P, Dolezal J, Eriksson O, Fortunel C, Freitas H, Golodets C, Grigulis C et al..  2007.  A standardized methodology to assess the effects of land use change on plant traits, communities and ecosystem functioning in grasslands. Annals of Botany. 99(5):967-985.
Espada M, Eves-van den Akker S, Maier T, Vijaypalani P, Baum TJ, Mota M, Jones JT.  2018.  STATAWAARS: A promoter motif associated with spatial expression in the major effector -producing tissues of the planparasitic nematode Bursaphelenchus xylophilus. BMC Genomics. 19:ArticleNo.553.
Squire GR, Breckling B, Pfeilstetter AD, Jorgensen RB, Lecomte J, Pivard S, Reuter H, Young MW.  2011.  Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.
Hodgson JG, Sharafi M, Jalili A, Diaz S, Montserrat-Marti G, Palmer C, Cerabolini B, Pierce S, Hamzehee B, Asri Y et al..  2010.  Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
Hazard C, Kruitbos L, Davidson H, Mbow FT, Taylor AFS, Johnson D.  2017.  Strain identity of the ectomycorrhizal fungus Laccaria bicolor is more important than richness in regulating plant and fungal performance under nutrient rich conditions. Frontiers in Microbiology. 8:ArticleNo.1874.
Jarvis SG, Woodward S, Taylor AFS.  2015.  Strong altitudinal partitioning in the distributions of ectomycorrhizal fungi along a short (300 m) elevation gradient. New Phytologist. 206:1145-1155.
Winward G, Avery LM, Frazer-Williams RAD, Jeffrey P, Stephenson T, Jefferson B.  2008.  A study of the microbial quality of grey water and an evaluation of treatment technologies for reuse. Ecological Engineering. 32(2):187-197.
Price JA, l Smith TKS, Jones JT.  2021.  Surface coat proteins of the potato cyst nematode, Globodera rostochiensis. Nematology. 23:113-123.
Burgess CGS, Bartley Y, Redman E, Skuce PJ, Nath M, Whitelaw F, Tait A, Gilleard JS, Jackson F.  2012.  A survey of the trichostrongylid nematode species present on UK sheep farms and associated anthelmintic control practices. Veterinary Parasitology. 189:299-307.
Avery LM, Williams AP, Killham K, Jones DL.  2008.  Survival of Eschericgia coli O157:H7 in waters from lakes, troughs, rivers, puddles and animal drinking troughs. The Science of the Total Environment. 389(2-3):378-385.
Vasileiadis VP, Dachbrodt-Saaydeh S, Kudsk P, Colnenne-David C, Leprince F, Holb IJ, Kierzek R, Furlan L, Loddo D, Melander B et al..  2017.  Sustainability of European winter wheat- and maize-based cropping systems: economic, environmental and social ex-post assessment of conventional and IPM-based systems. Crop Protection. 97:60-69.
Macdiarmid JI, Kyle J, Horgan GW, Loe J, Fyfe C, Johnstone A, McNeill G.  2012.  Sustainable diets for the future: can we contribute to reducing greenhouse gas emissions by eating a healthy diet? American Journal of Clinical Nutrition. 96:632-639.
Richards S, Rao L, Connelly S, Raj A, Raveendran L, Shirin S, Jamwal P, Helliwell R.  2021.  Sustainable water resources through harvesting rainwater and the effectiveness of a low-cost water treatment. Journal of Environmental Management. 286:ArticleNo.112223.
Lemaire B, Dlodlo O, Chimphango S, Stirton C, Schrire B, Boatwright JS, Honnay O, Smets E, Sprent JI, James EK et al..  2015.  Symbiotic diversity, specificity and distribution of rhizobia in native legumes of the Core Cape Subregion (South Africa). FEMS Microbiology Ecology. 91:1-17.
Bender FS, Plantenga F, Neftel A, Jocher M, Oberholzer HR, Kohl L, Giles M, Daniell T, Van der Heijden MGA.  2013.  Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. ISME Journal. 8:1336-1345.
Sargent F, Davidson FA, Kelly CL, Binny R, Christodoulides N, Gibson D, Johansson E, Kozyrska K, Lado LL, MacCallum J et al..  2013.  A synthetic system for expression of components of a bacterial microcompartment. Microbiology-SGM. 159:2427-2436.
Ollerton J, Trunschke J, Havens K, Landaverde-González P, Keller A, Gilpin A, Rech A, Baronio G, Phillips B, Mackin C et al..  2022.  A systematic review of methods for studying the impacts of outdoor recreation on terrestrial wildlife. Global Ecology and Conservation. 22:ArticleNo.e00917.
Smith P, Albanito F, Bell M, Bellarby J, Blagodatskiy S, Datta A, Dondini M, Fitton N, Flynn H, Hastings A et al..  2012.  Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
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Alexandrov GA, Ames D, Aumann C, Bellocchi G, Bruen M, Crout N, Erechtchoukova M, Hildebrandt A, Hoffman F, Jackisch C et al..  2011.  Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26:328-336.
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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.