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Clemente MR, Bustos-Sanmamed P, Loscos J, James EK, Perez-Rontome C, Navascues J, Gay M, Becana M.  2012.  Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
Mueller LA, Tanksley SD, Giovannoni JJ, van Eck J, Stack S, Choi D, Kim BD, Chen M, Cheng Z, Li C et al..  2005.  The tomato sequencing project, the first cornerstone of the international Solanaceae project (SOL). Comparative and Functional Genomics. 6:153-158. Abstract
Kamoun S, Furzer O, Jones JDG, Judelson HS, Ali GS, Dalio RJD, Roy SG, Schena L, Zambounis A, Panabieres F et al..  2015.  The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.
Jones JT, Haegeman A, Danchin EGJ, Gaur HS, Helder J, Jones MGK, Kikuchi T, Manzanilla-Lopez R, Palomares-Rius JE, Wesemael WML et al..  2013.  Top 10 plant parasitic nematodes in molecular plant pathology. Molecular Plant Pathology. 14:946-961.
Hentley WT, Hails RS, Johnson SN, Jones TH, Vanbergen AJ.  2014.  Top-down control by Harmonia axyridis mitigates the impact of elevated atmospheric CO2 on a plant-aphid interaction. Agricultural and Forest Entomology. 16:350-358.
Dello Jacovo E, Valentine TA, Maluk M, Toorop P, Lopez del Egido L, Frachon N, Kenicer G, Park L, Goff M, Ferro VA et al..  2019.  Towards a characterisation of the wild legume bitter vetch (Lathyrus linifolius L. (Reichard) Bässler): heteromorphic seed germination, root nodule structure and N-fixing rhizobial symbionts. Plant Biology.. 2:523-532.
Graham J, Hackett CA, Smith K, Woodhead M, MacKenzie K, Tierney I, Cooke DEL, Bayer MM, Jennings N.  2011.  Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry. Theoretical and Applied Genetics. 123:585-601.
Kranse O, Beasley H, Adams S, Pires-daSilva A, Bell C, Lilley CJ, Urwin PE, Bird D, Miska E, Smant G et al..  2021.  Towards genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles. G3 Genes, Genomes, Genetics. 11:ArticleNo.jkaa058.
Arts K, Macleod CJA, Ioris AAR, Han XW, Sripada S, Braga JF, Maffey G, Jekjantuk N, Zeng C, van der Wal R.  2019.  Towards more effective online environmental information provision through tailored natural language generation: Profiles of Scottish river user groups and an evaluative online experiment. Science of the Total Environment. 673:643-655.
Glendell M, Jones R, Dungait JAJ, Meusburger K, Schwendel AC, Barclay R, Barker S, Haley S, Quine TA, Meersmans J.  2018.  Tracing of particulate organic C sources across the terrestrial-aquatic continuum, a case study at the catchment scale (Carminowe Creek, South West England). Science of the Total Environment. 616-617:1077-1088.
Davis N, Jarvis A, Aitkenhead MJ, Polhill JG.  2020.  Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.
Jarret DA, Morris J, Cullen DW, Gordon SL, Verrall SR, Milne L, Hedley PE, Allwood JW, Brennan RM, Hancock RD.  2018.  A transcript and metabolite atlas of blackcurrant fruit development highlights hormonal regulation and reveals the role of key transcription factors. Frontiers in Plant Science. 9:ArticleNo.1235.
Tsai IJ, Tanaka R, Kanzaki N, Akiba M, Yokoi T, Espada M, Jones JT, Kikuchi T.  2016.  Transcriptional and morphological changes in the transition from mycetophagous to phytophagous phase in the plant-parasitic nematode Bursaphelenchus xylophilus. Molecular Plant Pathology. 17:77-83.
Elliott RM, de Roos B, Duthie SJ, Bouwman FG, Rubio-Aliaga I, Crosley LK, Mayer C, Polley AC, Heim C, Coort SL et al..  2014.  Transcriptome analysis of peripheral blood mononuclear cells in human subjects following a 36 h fast provides evidence of effects on genes regulating inflammation, apoptosis and energy metabolism. Genes and Nutrition. 9:ArticleNo.432.
Eves-van den Akker S, Lilley CJ, Danchin EGJ, Rancurel C, Cock PJA, Urwin PE, Jones JT.  2014.  The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biology and Evolution. 6:2181-2194.
Danchin EGJ, Perfus-Barbeoch L, Rancurel C, Thorpe P, Da Rocha M, Bajew S, Neilson R, Sokolova E, Dasilva C, Guy J et al..  2017.  The transcriptomes of xiphinema index and longidorus elongatus suggest independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes. Genes. 8:ArticleNo.287.
Martin-Ortega J, Perni A, Jackson-Blake L, Balana BB, Dunn SM, McKee A, Helliwell RC, Psaltopoulos D, Skuras D, Cooksley S et al..  2015.  A transdisciplinary approach to the economic analysis of the European Water Framework Directive. Ecological Economics. 116:34-45.
Jager NW, Challies E, Kochskämper E, Newig J, Benson D, Blackstock KL, Collins K, Ernst A, Evers M, Feichtinger J et al..  2016.  Transforming European water governance? EU water framework directive implementation in 13 member states Water. :ArticleNo.156.
Richter A, Jacobsen H-J, de Kathen A, de Lorenzo G, Briviba K, Hain R, Ramsay G, Kiesecker H.  2006.  Transgenic peas (Pisum sativum) expressing polygalacturonase inhibiting protein from raspberry (Rubus idaeus) and stilbene synthase from grape (Vitis vinifera). Plant Cell Reports. 25:1166-1173. Abstract
Russell JR, Hedley PE, Cardle L, Dancey S, Morris J, Booth A, Odee D, Mwaura L, Omondi W, Angaine P et al..  2014.  tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species. PLoS ONE. 9:e102502.
Currey PM, Johnson D, Sheppard LJ, Leith ID, Toberman H, van der Wal R, Dawson LA, Artz RRE.  2010.  Turnover of labile and recalcitrant soil carbon differ in response to nitrate and ammonium deposition in an ombrotrophic peatland. Global Change Biology. 16(8):2307-2321.
Blöschl G, Bierkens MFP, Chambel A, Cudennec C, Destouni G, Fiori A, Kirchner JW, McDonnell J, Savenije HHG, Sivapalan M et al..  2019.  Twenty three unsolved problems in hydrology (UPH) - a community perspective. Hydrological Sciences Journal.. 64:1141-1158.
Joshi MV, Mann SG, Antelmann H, Widdick DA, Fyans JK, Chandra G, Hutchings MI, Toth IK, Hecker M, Loria R et al..  2010.  The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
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Wang EL, Martre P, Zhao ZG, Ewert F, Maiorano A, Rotter RP, Kimball BA, Ottman MJ, Wall GW, White JW et al..  2017.  The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
Cammarano D, Rotter RP, Asseng S, Ewert F, Wallach D, Martre P, Hatfield JL, Jones JW, Rosenzweig C, Ruane AC et al..  2016.  Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research. 198:80-92.
Babikova Z, Johnson D, Bruce TJA, Pickett JA, Gilbert L.  2014.  Underground allies: how and why do mycelial networks help plants defend themselves? BioEssays. 36:21-26.
Babikova Z, Gilbert L, Bruce TJA, Birkett M, Caulfield JC, Woodcock C, Pickett JA, Johnson D.  2013.  Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack. Ecology Letters. 16:835-843.
Teel T, Manfredo M, Jensen FS, Buijs A, Fischer A, Riepe C, Arlinghaus R, Jacobs M.  2010.  Understanding the cognitive basis for human-wildlife relationships. International Journal of Sociology. 40:104-123.
Quilliam R, Williams AP, Avery L, Malham S, Jones D.  2011.  Unearthing human pathogens at the agricultural-environment interface: A review of current methods for the detection of Escherichia coli O157 in freshwater ecosystems. Agriculture, Ecosystems and Environment. 140:354-360.
van der Jagt APN, Craig T, Anable J, Brewer MJ, Pearson DG.  2014.  Unearthing the picturesque: the validity of the preference matrix as a measure of landscape aesthetics. Landscape and Urban Planning. 124:1-13.
Nilsson RH, Larsson KH, Taylor AFS, Bengtsson-Palme J, Jeppesen TS, Schigel D, Kennedy P, Picard K, Glockner FO, Tedersoo L et al..  2019.  The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research. 47:D259-D264.
Yuan JJ, Lu YL, Ferrier RC, Liu ZY, Su HQ, Meng J, Song S, Jenkins A.  2018.  Urbanization, rural development and environmental health in China. Environmental Development. 28:101-110.
Russell J, Hackett C, Hedley P, Lui H, Milne L, Bayer M, Marshall D, Jorgensen L, Gordon S, Brennan R.  2014.  The use of genotyping by sequencing in blackcurrant (Ribes nigrum): developing high-resolution linkage maps in species without reference genome sequences. Molecular Breeding. 33:835-849.
Jones HG.  2014.  The use of indirect or proxy markers in plant physiology. Plant Cell and Environment.
Picon-Cochard C, Pilon R, Revaillot S, Jestin M, Dawson L.  2008.  Use of near-infrared reflectance spectroscopy to predict the percentage of dead versus living grass roots. Plant and Soil. 317(1-2):309-320.
Cammarano D, Zierden D, Stefanova L, Asseng S, O'Brien JJ, Jones JW.  2016.  Using historical climate observations to understand future climate change crop yield impacts in the Southeastern US. Climatic Change. 134:311-326.
Winward G, Avery LM, Stephenson T, Jefferson B.  2008.  UV disinfection of grey water: particle size effect. Environmental Technology. 29(2):235-244.
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Sverrisdottir E, Sundmark EHR, Johnsen HO, Kirk HG, Asp T, Janss L, Bryan G, Nielsen KL.  2018.  The value of expanding the training population to improve genomic selection models in tetraploid potato. Frontiers in Plant Science. 9:ArticleNo.1118.
Sverrisdóttir E, Sundmark EHR, Johnsen HO, Kirk HG, Asp T, Janss L, Bryan G, Nielsen KL.  2018.  The value of expanding the training population to improve genomic selection models in tetraploid potato. Frontiers in Plant Science. 9:ArticleNo.1118.
Perez-Espona S, Perez-Barberia FJ, Jiggins CJ, Gordon IJ, Pemberton J.  2010.  Variable extent of sex-biased dispersal in a strongly polygynous mammal. Molecular Ecology. 19(15):3101-3113.
Zhan J, Linde CC, J T, Merz U, Steinebrunner F, McDonald BA.  2005.  Variation for neutral markers is correlated with variation for quantitative traits in the plant pathogenic fungus Mycosphaerella graminicola. Molecular Ecology. 14:2683-2693. Abstract
Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan GW, Johnson IT, Mariman EC, Elliott RM et al..  2009.  Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes and Nutrition. 4:95-102.
Swanston JS, Smith PL, Agu RC, Brosnan JM, Bringhurst TA, Jack FR.  2012.  Variation, across environments within the UK, in grain protein and grain hardness, in wheat varieties of differing distilling quality. Field Crops Research. 127:146-152.
Verchot-Lubicz J, Torrance L, Solovyev AG, Morozov SY, Jackson AO, Gilmer D.  2010.  Varied movement strategies employed by triple gene block encoding viruses (Review). Molecular Plant-Microbe Interactions. 23:1231-1247.
Johnson SN, Anderson EA, Dawson G, Griffiths DW.  2008.  Varietal susceptibility of potatoes to wireworm herbivory. Agricultural and Forest Entomology. 10:167-174. Abstract
Hill PW, Farrar J, Roberts P, Farrell M, Grant H, Newsham KK, Hopkins DW, Bardgett RD, Jones DL.  2011.  Vascular plant success in a warming Antarctic may be due to efficient nitrogen acquisition. Nature Climate Change. 1:50-53.
van der Jagt APN, Craig T, Brewer MJ, Pearson DG.  2017.  A view not to be missed: Salient scene content interferes with cognitive restoration. PLoS ONE. 12:e0169997.
Jones S, Baizan-Edge A, MacFarlane S, Torrance L.  2017.  Viral diagnostics in plants using next generation sequencing: computational analysis in practice. Frontiers in Plant Science. 8:ArticleNo.1770.
Hein I, Barciszewska-Pacak M, Hrubikova K, Williamson S, Dinesen M, Soenderby IE, Sundar S, Jarmolowski A, Shirasu K, Lacomme C.  2005.  Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley. Plant Physiology. 138:2155-2164. Abstract
Wang C, Miller DR, Brown I, Jiang Y, Castellazzi M.  2015.  Visualisation techniques to support public interpretation of future climate change and land use choices: a case study from N-E Scotland. International Journal of Digital Earth. Published online.
Wang C, Miller DR, Brown I, Jiang Y, Castellazzi M.  2016.  Visualisation techniques to support public interpretation of future climate change and land use choices: a case study from N-E Scotland. International Journal of Digital Earth. 9:586-605.
Wang C, Miller D, Brown I, Jiang Y, Castellazzi M.  2016.  Visualisation techniques to support public interpretation of future climate change and land use choices: a case study from NE Scotland. International Journal of Digital Earth. Published online..
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Gunnarsdottir MJ, Gardarsson SM, Figueras MJ, Puigdomènech C, Juárez R, Saucedo G, Arnedo MJ, Santos R, Monteiro S, Avery LM et al..  2020.  Water safety plan enhancements with improved drinking water quality detection techniques. Science of the Total Environment. 698:ArticleNo.134185.
González-Díaz P, Cavers S, Iason GR, Booth A, Russell J, Jump AS.  2018.  Weak isolation by distance and geographic diversity gradients persist in Scottish relict pine forest, linked to flowering asynchrony and effective gene flow. iForest - Biogeosciences and Forestry. 11:449-458.
Baxter E, Jarvis S, Palarea-Albaladejo J, Edwards SA.  2012.  The weaker sex? The propensity for male-biased piglet mortality PLoS ONE. 7:e30318.
Brendel M, Janssen A, Mayer CD, Pauly M.  2014.  Weighted logrank permutation tests for randomly right censored life science data. Scandinavian Journal of Statistics. 41:742-761.
Dicks LV, Rose DC, Ang F, Aston S, Birch ANE, Boatman N, Bowles EL, Chadwick D, Dinsdale A, Durham S et al..  2018.  What agricultural practices are most likely to deliver ‘sustainable intensification’ in the UK? Food and Energy Security. Published online..
Dicks LV, Rose DC, Ang F, Aston S, Birch ANE, Boatman N, Bowles EL, Chadwick D, Dinsdale A, Durham S et al..  2019.  What agricultural practices are most likely to deliver ‘sustainable intensification’ in the UK? Food and Energy Security. 8:ArticleNo.e00148.
Dicks LV, Rose DC, Ang F, Aston S, Birch ANE, Boatman N, Bowles EL, Chadwick D, Dinsdale A, Durham S et al..  2019.  What agricultural practices are most likely to deliver ‘sustainable intensification’ in the UK? Food and Energy Security. 8:ArticleNo.e00148.
Julie I, Damian M, Clive B, Barnes A, Bear C, Bell M, Cutress D, Davies L, de Boon A, Dinnie L et al..  2022.  What are the priority research questions for digital agriculture. Land Use Policy.
Payne RJ, Campbell C, Britton AJ, Mitchell RJ, Pakeman RJ, Jones L, Ross LC, Stevens C, Field C, Caporn SJM et al..  2019.  What is the most ecologically-meaningful metric of nitrogen deposition? Environmental Pollution. 247:319-331.
Dawson IK, Guariguata MR, Loo J, Weber JC, Lengkeek A, Bush D, Cornelius J, Guarino L, Kindt R, Orwa C et al..  2013.  What is the relevance of smallholders' agroforestry systems for conserving tropical tree species and genetic diversity in circa situm, in situ and ex situ settings? A review Biodiversity and Conservation. 22:301-324.
Estrada-de los Santos P, Palmer M, Chavez-Ramirez B, Beukes C, Steenkamp ET, Briscoe L, Khan N, Maluk M, Lafos M, Humm E et al..  2018.  Whole genome analyses suggests that Burkholderia sensu lato contains two additional novel genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the evolution of diazotrophy and nodulation in the Burkholderiaceae. Genes. 9:ArticleNo.389.
Crozier L, Hedley PE, Morris J, Wagstaff C, Andrews SC, Toth I, Jackson RW, Holden N.  2016.  Whole-transcriptome analysis of verocytotoxigenic Escherichia coli O157:H7 (Sakai) suggests plant-species-specific metabolic responses on exposure to spinach and lettuce extracts. Frontiers in Microbiology. 7
Choudhary S, Tak N, Bissa G, Chouhan B, Choudhary P, Sprent JI, James EK, Gehlot HS.  2020.  The widely distributed legume tree Vachellia (Acacia) nilotica subsp. indica is nodulated by genetically diverse Ensifer strains in India. Symbiosis. 80:15-31.
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Chen W-M, James EK, Chou J-H, Sheu S-Y, Yang S-Z, Sprent JI.  2005.  β-Rhizobia from Mimosa pigra, a newly discovered invasive plant in Taiwan. New Phytologist. 168:661-675. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.