Publications list

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2020

Barton S, Jenkins J, Buckling A, Schaum C, Smirnoff N, Raven JA, Yvon-Durocher G. 2020. Evolutionary temperature compensation of carbon fixation in marine phytoplankton. Ecology Letters. 23:722-733.

Cortada L, Omagwa J, Kisitu J, Adhiambo M, Mburu H, Kisitu J, Orr J, Jones JT, Wasukira A, Kisingiri B et al.. 2020. First report of potato cyst nematode Globodera rostochiensis, infecting potato (Solanum tuberosum) in Uganda. Plant Disease. 104:3082-3083.

Jeliazkov A, Mijatovic D, Chantepie S, Andrew N, Arlettaz R, Barbaro L, Barsoum N, Bartonova A, Belskaya E, Bonada N et al.. 2020. A global database for metacommunity ecology, integrating species, traits, environment and space. Scientific Data. 7:1-15.

Jilkova V, Sim A, Thornton B, Jandova K, Cajthaml T, Paterson E. 2020. Impact of plant species and atmospheric CO2 concentration on rhizodeposition and soil microbial activity and community composition. Journal of Plant Nutrition and Soil Science. 183:327-337.

Corlett RT, Primack RB, Devictor V, Maas B, Goswami VR, Bates AE, Koh LP, Regan TJ, Loyola R, Pakeman RJ et al.. 2020. Impacts of the coronavirus pandemic on biodiversity conservation. Biological Conservation. 246:ArticleNo.UNSP108571.

Preedy K, Brennan R, Jones H, Gordon S. 2020. Improved models of the effects of winter chilling on blackcurrant (Ribes nigrum L.) show cultivar specific sensitivity to warm winters. Agricultural and Forest and Meteorology. 280:ArticleNo.UNSP107777.

Yang X, Lu Y, Wang F, Chen Y, Tian Y, Jiang L, Pemg J, Zheng H, Lin Lin CY, Taliansky M et al.. 2020. Involvement of the chloroplast gene ferredoxin 1 in multiple responses of N. benthamiana to Potato virus X infection. Journal of Experimental Botany. Published online..

Yang X, Lu YW, Wang F, Chen Y, Tian YZ, Jiang LL, Pemg JJ, Zheng HY, Lin L, Yan CQ et al.. 2020. Involvement of the chloroplast gene ferredoxin 1 in multiple responses of Nicotiana benthamiana to Potato virus X infection. Journal of Experimental Botany. 71:2142-2156.

Greenfield LM, Hill PW, Seaton FM, Paterson E, Baggs EM, Jones DL. 2020. Is soluble protein mineralisation and protease activity in soil regulated by supply or demand? Soil Biology and Biochemistry. 150:ArticleNo.108007..

Jungsberg L, Copus A, Herslund LB, Nilsson K, Perjo L, Randall L, Berlina A. 2020. Key actors in community-driven social innovation in rural areas in the Nordic countries. Journal of Rural Studies. 79:276-285.

Benaud P, Anderson K, Evans M, Farrow L, Glendell M, James MR, Quine TA, Quinton JN, Rawlins RBRJ, Brazier RE. 2020. National-scale geodata describe widespread accelerated soil erosion. Geoderma. 371:ArticleNo.114378.

Del Cortona A, Jackson CJ, Bucchini F, Van Bel M, D'Hondt S, Skaloud P, Delwiche CF, Knoll AH, Raven JA, Verbruggen H et al.. 2020. Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proceedings of the National Academy of Sciences of the United States of America. 117:2551-2559.

Zheng JY, Duan SG, Armstrong MR, Duan YF, Xu JF, Chen XW, Hein I, Jin LP, Li GC. 2020. New findings on the resistance mechanism of an elite diploid wild potato species JAM1-4 in response to a super race strain of Phytophthora infestans. Phytopathology. 110:1375-1387.

Matthews KB, Wardell-Johnson D, Miller DG, Fitton N, Jones E, Bathgate S, Randle T, Matthews RB, Smith P, Perks M. 2020. Not seeing the carbon for the trees? Why area-based targets for establishing new woodlands can limit or underplay their climate change mitigation benefits Land Use Policy. 97:ArticleNo.104690.

Grimm V, Railsback SF, Vincenot C, Berger U, Gallagher C, DeAngelis DL, Edmonds B, Ge J, Giske J, Groeneveld J et al.. 2020. The ODD protocol for describing agent-based and other simulation models: a second update to improve clarity, replication, and structural realism. Journal of Artificial Societies and Social Simulation. 23:ArticleNo.7.

Ferretti L, Perez-Martin E, Zhang FQ, Maree F, de Klerk-Lorist LM, van Schalkwykc L, Juleff ND, Charleston B, Ribeca P. 2020. Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid. PLoS Pathogens. 16:ArticleNo.e1008235.

Breeze TD, Bailey AP, Balcombe KG, Brereton T, Comont R, Edwards M, Garratt MP, Harvey M, Hawes C, Isaac N et al.. 2020. Pollinator monitoring more than pays for itself. Journal of Applied Ecology.

Boone C, Pickett S, Bammer G, Bawa K, Dunne J, Gordon IJ, Hart D, Hellmann J, Miller A, New M et al.. 2020. Preparing interdisciplinary leadership for a sustainable future. Sustainability Science..

Unkovich M, Herridge D, James EK, Giller K, Peoples MB. 2020. Reliable quantification of N-2 fixation by non-legumes remains problematic. Nutrient Cycling in Agroecosystems. Published online..

Jones S, Cowan G, MacFarlane S, Mukoye B, Mangeri BC, Were H, Torrance L. 2020. RNA sequence analysis of diseased groundnut (Arachis hypogaea) reveals the full genome of groundnut rosette assistor virus (GRAV). Virus Research. 277:ArticleNo.197837.

van Rees CB, Waylen KA, Schmidt-Kloiber A, Thackeray S, Kalinkat G, Martens K, Domisch S, Lillebø A, Hermoso V, Grossert HP et al.. 2020. Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience. Conservation Letters. Published online..

Raczynska KD, Stepien A, Kierzkowski D, Kalak M, Bajczyk M, McNicol J, Simpson CG, Szweykowska-Kulinska Z, Brown JWS, Jarmolowski A. 2020. The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana (vol 42, 1224, 2014). Correction. Nucleic Acids Research. 48:1604-1605.

Pokhare SS, Thorpe P, Hedley P, Morris J, Habash SS, Elashry A, Eves-van den Akker S, Grundler FMW, Jones JT. 2020. Signatures of adaptation to a monocot host in the plant-parasitic cyst nematode Heterodera sacchari. Plant Journal. 103:1263-1274.

Chen ZM, Wang Q, Ma JW, Chapman S, Zou P, Ye J, Yu QG, Sun WC, Lin H, Jiang LN. 2020. Soil microbial activity and community composition as influenced by application of pig biogas slurry in paddy field in southeast China. Paddy and Water Environment. 18:15-25.

Davis N, Jarvis A, Aitkenhead MJ, Polhill JG. 2020. Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.

Gunnarsdottir MJ, Gardarsson SM, Figueras MJ, Puigdomènech C, Juárez R, Saucedo G, Arnedo MJ, Santos R, Monteiro S, Avery LM et al.. 2020. Water safety plan enhancements with improved drinking water quality detection techniques. Science of the Total Environment. 698:ArticleNo.134185.

Jones HG. 2020. What plant is that? Tests of automated image recognition apps for plant identification on plants from the British flora AOB Plants. 12:ArticleNo.plaa052.

Choudhary S, Tak N, Bissa G, Chouhan B, Choudhary P, Sprent JI, James EK, Gehlot HS. 2020. The widely distributed legume tree Vachellia (Acacia) nilotica subsp. indica is nodulated by genetically diverse Ensifer strains in India. Symbiosis. 80:15-31.

2021

Jiang F, Zhang L, Zhou J, George TS, Feng G. 2021. Arbuscular mycorrhizal fungi enhance mineralisation of organic phosphorus by carrying bacteria along their extraradical hyphae. New Phytologist. 230:304-315.

Biurrun I, Pielech R, Dembicz I, Gillet F, Kozub L, Marcenò C, Reitalu T, van Meerbeek K, Guarino R, Chytrý M et al.. 2021. Benchmarking plant diversity of Palaearctic grasslands and other open habitats. Journal of Vegetation Science. 32:ArticleNo.e13050.

Plue J, Van Calster H, Auestad I, Basto S, Bekker RM, Bruun HH, Chevalier R, Decocq G, Grandin U, Hermy M et al.. 2021. Buffering effects of seed banks on plant community diversity in response to land use and climate. Global Ecology and Biogeography. 30:128-139.

Raittz RT, Reginatto De Pierri C, Maluk M, Bueno Batista M, Carmona M, Junghare M, Faoro H, Cruz LM, Battistoni F, de Souza E et al.. 2021. Comparative genomics provides insights into the taxonomy of Azoarcus and reveals separate origins of Nif genes in the proposed Azoarcus and Aromatoleum genera. Genes. 12:ArticleNo.71.

Eastwood A, Juárez-Bourke A, Herrett S, Hague A. 2021. Connecting young people with greenspaces: the case for participatory video. People and Nature. Published online..

Young JPW, Moeskjær S, Afonin A, Rahi P, Maluk M, James EK, Cavassim MIA, Rashid M, Aserse AA, Perry BJ et al.. 2021. Defining the rhizobium leguminosarum species complex. Genes. 12:ArticleNo.111.

de Jesus Colwell F, Souter J, Bryan GJ, Compton LJ, Boonham N, Prashar A. 2021. Development and validation of methodology for estimating potato canopy structure for field crop phenotyping and improved breeding. Frontiers in Plant Science. 12:ArticleNo.612843.

Jabre I, Chaudhary S, Guo W, Kalyna M, Reddy ASN, Chen W, Zhang R, Wilson C, Syed NH. 2021. Differential nucleosome occupancy modulates alternative splicing in Arabidopsis thaliana. New Phytologist. 229:1937-1945.

Lin H, Sun WC, Jin DF, Yu OG, Yang YY, Zhang Z, Sun PF, Ma JW. 2021. Effect of composting on the conjugative transmission of sulfonamide resistence and sulfonamide-resistant baterial population. Journal of Cleaner Production. 285:ArticleNo.125483.

Rowney FM, Brennan GL, Skjoth CA, Griffith GW, McInnes RN, Clewlow Y, Adams-Groom B, Barber A, de Vere N, Economou T et al.. 2021. Environmental DNA reveals links between abundance and composition of airborne grass pollen and respiratory health. Current Biology. 31:1995-2003.

Dwyer C, Millett J, Pakeman RJ, Jones L. 2021. Environmental modifiers of the relationship between water table depth and Ellenberg’s indicator of soil moisture. Ecological Indicators. 132:ArticleNo.108320.

Jamwal P, Raj AV, Raveendran L, Shirin S, Connelly S, Yeluripati J, Richards S, Rao L, Helliwell RC, Tamburini M. 2021. Evaluating the performance of horizontal sub-surface flow constructed wetlands: a case study from southern India. Ecological Engineering Journal. 162:ArticleNo.106170.

Raubach S, Kilian B, Dreher K, Amri A, Bassi FM, Boukar O, Cook D, Cruickshank A, Fatokun C, El Haddad N et al.. 2021. From bits to bites: advancement of the Germinate platform to support prebreeding informatics for crop wild relatives. Crop Science. Published online.

Jeger M, Beresford R, Bock C, Brown N, Fox A, Newton AC, Vicent A, Xu X, Yuen J. 2021. Global challenges facing plant pathology: multidisciplinary approaches to meet the food security and environmental challenges in the mid-21st century. CABI Agriculture and Bioscience. 2:ArticleNo.20.

van Veelen B, Rella L, Aiken GT, Judson E, Gambino E, Jenss A, Parashar A, Pinker A. 2021. Interventions on democratizing infrastructure. Political Geography. 87:ArticleNo.102378.

Holland JE, White PJ, Thauvin JN, Jordan-Meille L, Haefele SM, Thomas CL, Goulding KWT, McGrath SP. 2021. Liming impacts barley yield over a wide concentration range of soil exchangeable cations. Nutrient Cycling in Agroecosystems. Published online..

Cai Q, He BY, Wang SM, Fletcher S, Niu DD, Mitter N, Birch PRJ, Jin HL. 2021. Message in a bubble: shuttling small RNAs and proteins between cells and interacting organisms using extracellular vesicles. Annual Review of Plant Biology. 72:497-524.

Matthews KB, Renner A, Blackstock KL, Waylen KA, Miller DG, Wardell-Johnson DH, Juarez-Bourke A, Cadillo-Benalcazar J, Schyns JF, Giampietro M. 2021. Old wine in new bottles: exploiting data from the EU’s Farm Accountancy Data Network for Pan-EU sustainability assessments of agricultural production systems. Sustainability. 13:ArticleNo.10080.

Evans CD, Peacock M, Baird AJ, Artz RRE, Burden A, Callaghan N, Chapman PJ, Cooper HM, Coyle M, Craig E et al.. 2021. Overriding importance of water table in the greenhouse gas balance of managed peatlands. Nature. Published online.

Mavima L, Beukes CW, Palmer M, De Meyer SE, James EK, Maluk M, Gross E, Bueno dos Reis Junior F, Avontuur JR, Chan WY et al.. 2021. Paraburkholderia youngii sp. nov. and 'Paraburkholderia atlantica' - Brazilian and Mexican Mimosa-associated rhizobia that were previously known as Paraburkholderia tuberum sv. Mimosae. Systematic and Applied Microbiology. 44:ArticleNo.126152.

Jiang LL, Lu YW, Zheng XY, Yang X, Chen Y, Zhang TH, Zhao X, Wang S, Zhao X, Song XJ et al.. 2021. The plant protein NbP3IP directs degradation of Rice stripe virus p3 silencing suppressor protein to limit virus infection through interaction with the autophagy-related protein NbATG8. New Phytologist. 229:1036-1051.

Blackstock KL, Novo P, Byg A, Creaney R, Juarez Bourke A, Maxwell JL, Tindale SJ, Waylen KA. 2021. Policy instruments for environmental public goods: interdependencies and hybridity. Land Use Policy. 104:ArticleNo.104709.

Breeze TD, Bailey AP, Balcombe KG, Brereton T, Comont R, Edwards M, Garratt MP, Harvey M, Hawes C, Isaac N et al.. 2021. Pollinator monitoring more than pays for itself. Journal of Applied Ecology. 58:44-57.

Benaud P, Anderson K, Evans M, Farrow L, Glendell M, James MR, Quine TA, Quinton JN, Rickson RJ, Brazier RE. 2021. Reproducibility, open science and progression in soil research. A reply to "Response tot 'National-scale geodata describe widespread accelerated soil erosion' Benaud et al. (2020) Geoderma 271, 114378" by Evans and Boardman (2021). Geoderma. 402:ArticleNo.115181.

van Rees CB, Waylen KA, Schmidt-Kloiber A, Thackeray SJ, Kalinkat G, Martens K, Domisch S, Lillebø AI, Hermoso V, Grossert HP et al.. 2021. Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience. Conservation Letters. 14:ArticleNo.e12771.

Wang G, Jin Z, Wang X, George TS, Feng G, Zhang L. 2021. Simulated root exudates stimulate the abundance of Saccharimonadales to improve the potential of organic phosphorus mobilization in maize rhizosphere. Applied Soil Ecology. 170:ArticleNo.104274.

Price JA, l Smith TKS, Jones JT. 2021. Surface coat proteins of the potato cyst nematode, Globodera rostochiensis. Nematology. 23:113-123.

Richards S, Rao L, Connelly S, Raj A, Raveendran L, Shirin S, Jamwal P, Helliwell R. 2021. Sustainable water resources through harvesting rainwater and the effectiveness of a low-cost water treatment. Journal of Environmental Management. 286:ArticleNo.112223.

Kranse O, Beasley H, Adams S, Pires-daSilva A, Bell C, Lilley CJ, Urwin PE, Bird D, Miska E, Smant G et al.. 2021. Towards genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles. G3 Genes, Genomes, Genetics. 11:ArticleNo.jkaa058.

2022

Shu-Yi-Dan Z, Huang F-YH, Xin-Yuan Z, Chenshuo L, Ming-Kang J, Neilson R, Li HL, Jian-Qiang S. 2022. Conurbation size drives antibiotic resistance along the river. Science of the Total Environment.

Maluk M, Ferrando-Molina F, Lopez del Egido L, Langarica-Fuentes A, Genet Gebre Yohannes G, Young M, Martin P, Hawes C, Gantlett R, Kenicer G et al.. 2022. Fields with no recent legume cultivation have sufficient nitrogenfixing rhizobia for crops of faba bean (Vicia faba L). Plant and Soil.

Sperandii MG, F. DB, Valencia E, GÖTzenberger L, Bazzichetto M, Galland T, VojtkÓ AE, Conti L, Adler PB, Buckley H et al.. 2022. A global collection of permanent vegetation plots. Journal of Vegetation Science. Journal of Vegetation Science. 33

Khairnar M, Hagir A, Parmar K, Sayyed RZ, James EK, Rahi P. 2022. Phylogenetic diversity and plant growthpromoting activities of rhizobia nodulating fenugreek (Trigonella foenumgraecum Linn) cultivated in different agroclimatic regions of India. FEMS Microbiology Ecology.

Ollerton J, Trunschke J, Havens K, Landaverde-González P, Keller A, Gilpin A, Rech A, Baronio G, Phillips B, Mackin C et al.. 2022. Pollinator-flower interactions in gardens during the COVID19 pandemic lockdown of 2020. Journal of Pollination Ecology.

Ollerton J, Trunschke J, Havens K, Landaverde-González P, Keller A, Gilpin A, Rech A, Baronio G, Phillips B, Mackin C et al.. 2022. A systematic review of methods for studying the impacts of outdoor recreation on terrestrial wildlife. Global Ecology and Conservation. 22:ArticleNo.e00917.

Julie I, Damian M, Clive B, Barnes A, Bear C, Bell M, Cutress D, Davies L, de Boon A, Dinnie L et al.. 2022. What are the priority research questions for digital agriculture. Land Use Policy.

In Press

Jouet A, Saunders DGO, McMullan M, Ward B, Furzer O, Jupe F, Cevik V, Hein I, Thilliez GJA, Holub E et al.. In Press. Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field. New Phytologist. Published online..

Thilliez GJA, Armstrong MR, Lim TY, Baker K, Jouet A, Ward B, van Oosterhout C, Jones JDG, Huitema E, Birch PRJ et al.. In Press. Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist. Published online..