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Found 1648 results

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2014
Ribeiro KM, Baretto B, Pasqual M, White PJ, Braga RA, Dupuy LX.  2014.  Continuous, high-resolution biospeckle imaging reveals a discrete zone of activity at the root apex that responds to contact with obstacles. Annals of Botany. 113:555-563.
Canton GJ, Katzer F, Maley SW, Bartley PM, Benavides-Silvan J, Palarea-Albaladejo J, Pang Y, Smith SH, Rocchi M, Buxton D et al..  2014.  Cytokine expression in the placenta of pregnant cattle after inoculation with Neospora caninum. Veterinary Immunology and Immunopathology. 161:77-89.
Prentice JC, Marion G, White PCL, Davidson RS, Hutchings MR.  2014.  Demographic processes drive increases in wildlife disease following population reduction. PLoS ONE. 9:e86563.
Britton AJ, Mitchell RJ, Potts JM, Genney DR.  2014.  Developing monitoring protocols for cost-effective surveillance of lichens. The Lichenologist. 46:471-482.
Anderson HB, Evans PGH, Potts JM, Harris MP, Wanless S.  2014.  The diet of Common Guillemot Uria aalge chicks provides evidence of changing prey communities in the North Sea. Ibis. 156:23-34.
Palomares-Rius JE, Hirooka Y, Tsai IJ, Masuya H, Hino A, Kanzaki N, Jones JT, Kikuchi T.  2014.  Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. BMC Evolutionary Biology. 14
Potts T, Burdon D, Jackson E, Atkins J, Saunders J, Hastings E, Langmead O.  2014.  Do Marine Protected Areas deliver flows of ecosystem services to support human welfare? Marine Policy. 44:139-148.
Pertry I, Nothegger C, Sweet J, Kuiper H, Davies HV, Iserentant D, Hull R, Mezzetti B, Messens K, De Loose M et al..  2014.  DTREEv2, a computer-based support system for the risk assessment of genetically modified plants. New Biotechnology. 31:166-171.
Trudgill DL, Phillips MS, Elliott MJ.  2014.  Dynamics and management of the white potato cyst nematode Globodera pallida in commercial potato crops. Annals of Applied Biology. 164:18-34.
Herbert LJ, Vali L, Hoyle DV, Innocent G, McKendrick IJ, Pearce MC, Mellor D, Porphyre T, Locking M, Allison L et al..  2014.  E-coli O157 on Scottish cattle farms: Evidence of local spread and persistence using repeat cross-sectional data. BMC Veterinary Research. 10
Stokes A, Douglas GB, Fourcaud T, Giadrossich F, Gillies C, Hubble T, Kim JH, Loades KW, Mao Z, McIvor IR et al..  2014.  Ecological mitigation of hillsope instability: ten key issues facing researchers and practitioners. Plant and Soil. 377:1-23.
Shepherd LVT, Hackett CA, Alexander CJ, Sungurtas JA, Pont SDA, Stewart D, McNicol JW, Wilcockson SJ, Leifert C, Davies HV.  2014.  Effect of agricultural production systems on the potato metabolome. Metabolomics. 10:212-224.
Gimona A, Poggio L, Aalders I, Aitkenhead M.  2014.  The effect of image compression on synthetic PROBA-V images. International Journal of Remote Sensing. 35:2639-2653.
Gotame TP, Cullen DW, Graham J, Hedley P, Smith K, Morris J, Andersen L, Petersen KK.  2014.  Effect of short-term exposure to high-temperature on total gene expression in the leaves of four raspberry (Rubus idaeus L.) cultivars. Journal of Horticultural Science and Biotechnology. 89:532-541.
Jones J, Witek K, Verweij W, Jupe F, Cooke DEL, Dorling S, Tomlinson L, Smoker M, Perkins S, Foster S.  2014.  Elevating crop disease resistance with cloned genes. Philosophical Transactions of the Royal Society B, Biological Sciences.. 369:ArticleNo20130087.
Gordon IJ, Evans DM, Garner TWJ, Katzner T, Gompper ME, Altwegg R, Branch TA, Johnson JA, Pettorelli N.  2014.  Enhancing communication between conservation biologists and conservation practitioners: Letter from the Conservation Front Line. Animal Conservation. 17:1-2.
Searle KR, Barber J, Stubbins F, Labuschagne K, Carpenter S, Butler A, Denison E, Sanders C, Mellor PS, Wilson A et al..  2014.  Environmental drivers of Culicoides phenology: how important is species-specific variation when determining disease policy? PLoS One. 9:e111876.
Fazey I, Bunse L, Msika J, Pinke M, Preedy K, Evely AC, Lambert E, Hastings E, Morris S, Reed MS.  2014.  Evaluating knowledge exchange in interdisciplinary and multi-stakeholder research. Global Environmental Change - Human and Policy Dimensions. 25:204-220.
Amar D, Frades I, Danek A, Goldberg T, Sharma SK, Hedley P, Proux-Wera E, Andreasson E, Shamir R, Tzfadia O et al..  2014.  Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case. BMC Plant Biology. 14:329.
Perez-Barberia FJ, Duff EI, Brewer MJ, Guinness FE.  2014.  Evaluation of methods to age Scottish red deer: the balance between accuracy and practicality. Journal of Zoology. 294:180-189.
Frank ASK, Johnson CN, Potts JM, Fisher A, Lawes MJ, Woinarski JCZ, Tuft K, Radford IJ, Gordon IJ, Collis MA et al..  2014.  Experimental evidence that feral cats cause local extirpation of small mammals in Australia's tropical savannas. Journal of Applied Ecology. 51:1486-1493.
Villar N, Cornulier T, Evans D, Pakeman RJ, Redpath S, Lambin X.  2014.  Experimental evidence that livestock grazing intensity affects cyclic vole population regulation processes. Population Ecology. 56:55-61.
Powell C, Hughes AD, Kelly MS, Conner S, McDougall GJ.  2014.  Extraction and identification of antioxidant polyhydroxynaphthoquinone pigments from the sea urchin, Psammechinus miliaris. LWT - Food Science and Technology. 59:455-460.
Cavieres LA, Brooker RW, Butterfield BJ, Cook BJ, Kikvidze Z, Lortie CJ, Michalet R, Pugnaire FI, Schoeb C, Xiao S et al..  2014.  Facilitative plant interactions and climate simultaneously drive alpine plant diversity. Ecology Letters. 17:193-202.
Gilhespy S, Anthony S, Cardenas L, Chadwick D, del Prado A, Li C, Middelbrook T, Rees RM, Salas W, Sanz-Cobena A et al..  2014.  First 20 years of DNDC: model evolution. Ecological Modelling. 292:51-62.
Rossez Y, Holmes A, Wolfson WB, Gally DL, Mahjan A, Pedersen HL, Willats WGT, Toth IK, Holden N.  2014.  Flagella interact with ionic plant lipids to mediate adherence of pathogenic Escherichia coli to fresh produce plants. Environmental Microbiology. 16:2181-2195.
Pakeman RJ.  2014.  Functional trait metrics are sensitive to the completeness of the species' trait data? Methods in Ecology and Evolution. 5:9-15.
Rhee YJ, Hillier S, Pendlowski H, Gadd GM.  2014.  Fungal transformation of metallic lead to pyromorphite in liquid medium. Chemosphere. 113:17-21.
Gosney BJ, Oreilly-Wapstra JM, Forster LG, Barbour RC, Iason GR, Potts BM.  2014.  Genetic and ontogenetic variation in an endangered tree structures dependent arthropod and fungal communities. PLoS ONE. 9:e114132.
Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok VC, Cock PJA et al..  2014.  The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology. 15
Ho T, Cardle L, Xu X, Bayer M, Prince SJ, Mutava RN, Marshall DF, Syed NH.  2014.  Genome-Tagged Amplification (GTA): a PCR-based method to prepare sample-tagged amplicons from hundreds of individuals for next generation sequencing. Molecular Breeding. 34:977-988.
Campbell R, Pont SDA, Morris JA, McKenzie G, Sharma SK, Hedley PE, Ramsay G, Bryan GJ, Taylor MA.  2014.  Genome-wide QTL and bulked transcriptomic analysis reveals new candidate genes for the control of tuber carotenoid content in potato (Solanum tuberosum L.). Theoretical and Applied Genetics. 127:1917-1933.
Schoeb C, Michalet R, Cavieres LA, Pugnaire FI, Brooker RW, Butterfield BJ, Cook BJ, Kikvidze Z, Lortie CJ, Xiao S et al..  2014.  A global analysis of bidirectional interactions in alpine plant communities shows facilitators experiencing strong reciprocal fitness costs. New Phytologist. 202:95-105.
Pozsgai G, Littlewood NA.  2014.  Ground beetle (Coleoptera: Carabidae) population declines and phenological changes: is there a connection? Ecological Indicators. 41:15-24.
Palacio S, Aitkenhead MJ, Escudero A, Montserrat-Marti G, Maestro M, Robertson J.  2014.  Gypsophile chemistry unveiled: Fourier transform infrared (FTIR) spectroscopy provides new insight into plant adaptations to gypsum soils. PLoS ONE. 9:e107285.
Payne RJ, Caporn SJM, Field CD, Carroll JA, Edmondson JL, Britton AJ, Dise NB.  2014.  Heather moorland vegetation and air pollution: a comparison and synthesis of three national gradient studies. Payne, R.J.; Caporn, S.J.M.; Field, C.D.; Carroll, J.A.; Edmondson, J.L.; Britton, A.J.; Dise, N.B. Water, Air and Soil Pollution.. 225:ArticleNo.1198.
Liu H, Bayer M, Druka A, Russell J, Hackett C, Poland J, Ramsay L, Hedley P, Waugh R.  2014.  High resolution mapping of the Breviaristatum-e (ari-e) locus in cultivated barley using genotyping by sequencing (GBS). BMC Genomics. 15
Lewis RJ, Pakeman RJ, Marrs RH.  2014.  Identifying the multi-scale spatial structure of plant community determinants of an important national resource. Journal of Vegetation Science. 25:184-197.
Katzer F, Canton G, Burrells A, Palarea-Albaladejo J, Horton B, Bartley PM, Pang Y, Chianini F, Innes EA, Benavides J.  2014.  Immunization of lambs with the S48 strain of Toxoplasma gondii reduces tissue cyst burden following oral challenge with a complete strain of the parasite. Veterinary Parasitology. 205:46-56.
Reed MS, Moxey A, Prager K, Hanley N, Skates J, Bonn A, Evans CD, Glenk K, Thomson K.  2014.  Improving the link between payments and the provision of ecosystem services in agri-environment schemes. Ecosystem Services. 9:44-53.
Babikova Z, Gilbert L, Randall KC, Bruce TJA, Pickett JA, Johnson D.  2014.  Increasing phosphorus supply is not the mechanism by which arbuscular mycorrhiza increase attractiveness of bean (Vicia faba) to aphids. Journal of Experimental Botany. 65:5231-5241.
Canton GJ, Katzer F, Maley SW, Bartley PM, Benavides-Silvan J, Palarea-Albaladejo J, Pang Y, Smith SH, Rocchi MS, Buxton D et al..  2014.  Inflammatory infiltration into placentas of Neospora caninum challenged cattle correlates with clinical outcome of pregnancy. Veterinary Research. 45:11.
Wilson L, Wilson MJ, Green J, Patey I.  2014.  The influence of clay mineralogy on formation damage in North Sea reservoir sandstones: a review with illustrative examples. Earth Science Reviews. 134:70-80.
Peukert S, Griffith BA, Murray PJ, Macleod CJA, Brazier RE.  2014.  Intensive management in grasslands causes diffuse water pollution at the farm scale. Journal of Environmental Quality. 43:2009-2023.
Irvine RJ, Moseley M, Leckie F, Martinez-Padilla, J.; Millan J, Donley D, Miller A, Pound M, Mougeot F.  2014.  Investigating the loss of recruitment potential in red grouse (Lagopus lagopus scoticus): the relative importance of hen mortality, food supply, tick infestation and louping-ill. European Journal of Wildlife Research. 60:313-322.
Edwards P, Pignotti E, Mellish C, Eckhardt A, Ponnamperuma K, Bouttaz T, Philip L, Pangbourne K, Polhill JG, Gotts NM.  2014.  Lessons learnt from the deployment of a semantic virtual research environment. Journal of Web Semantics. 27-28:70-77.
Sulpice R, Ishihara H, Schlereth A, Cawthray GR, Encke B, Giavalisco P, Ivakov A, Arrivault S, Jost R, Krohn N et al..  2014.  Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell and Environment. 37:1276-1298.
Buccianti A, Nisi B, Martin-Fernandez JA, Palarea-Albaladejo J.  2014.  Methods to investigate the geochemistry of groundwaters with values for nitrogen compounds below the detection limit. Journal of Geochemical Exploration. 141:78-88.
McIntyre N, Ballard C, Bruen M, Bulygina N, Buytaert W, Cluckie I, Dunn SM, Ehret U, Ewen J, Gelfan A et al..  2014.  Modelling the hydrological impacts of rural land use change. Hydrology Research. 45:737-754.
Lisboa FJG, Peres-Neto PR, Chaer GM, Jesus EC, Mitchell RJ, Chapman SJ, Berbara RLL.  2014.  Much beyond Mantel: bringing Procrustes Association metric to the plant and soil ecologist's toolbox. PLoS ONE. 9:e101238.
van Noordwijk M, Matthews RB, Agus F, Farmer J, Verchot L, Hergoualc'h K, Persch S, Tata HL, Khasanah NM, Widayati A et al..  2014.  Mud, muddle and models in the knowledge value-chain to action on tropical peatland conservation. Mitigation and Adaptation Strategies for Global Change. 19:887-905.
Ernfors M, Brennan FP, Richards KG, McGeough KL, Griffiths BS, Laughlin RJ, Watson CJ, Philippot L, Grant J, Minet E et al..  2014.  The nitrification inhibitor dicyandiamide increases mineralisation-immobilisation turnover in slurry amended grassland soil. Journal of Agricultural Science. 152:S137-S149.
Pai B, Siripornmongcolchai T, Berentsen B, Pakzad A, Vieuille C, Pallesen S, Pajak M, Simpson TI, Armstrong JD, Wibrand K et al..  2014.  NMDA receptor-dependent regulation of miRNA expression and association with Argonaute during LTP in vivo. Frontiers in Cellular Neuroscience. 7
Song Y, Glasbey CA, Polder G, van der Heijden GWAM.  2014.  Non-destructive automatic leaf area measurements by combining stereo and time-of-flight images. IET Computer Vision. 8:391-403.
Craig T, Polhill JG, Dent I, Galan-Diaz C, Heslop S.  2014.  The North East Scotland Energy Monitoring Project: Exploring relationships between household occupants and energy usage. Energy and Buildings. 75:493-503.
Pantidos N, Boath A, Lund V, Conner S, McDougall GJ.  2014.  Phenolic-rich extracts from the edible seaweed, Ascophyllum nodosum, inhibit alpha-amylase and alpha-glucosidase: Potential anti-hyperglycemic effects. Journal of Functional Foods. 10:201-209.
Abad ZG, Abad JA, Cacciola SO, Pane A, Faedda R, Moralejo E, Perez-Sierra A, Abad-Campos P, Alvarez-Bernaola LA, Bakonyi J et al..  2014.  Phytophthora niederhauserii sp. nov., a polyphagous species associated with ornamentals, fruit trees and native plants in 13 countries. Mycologia. 106:431-447.
Zhang XG, McGeoch SC, Johnstone AM, Holtrop G, Sneddon AA, MacRury SM, Megson IL, Pearson DWM, Abraham P, de Roos B et al..  2014.  Platelet-derived microparticle count and surface molecule expression differ between subjects with and without type 2 diabetes, independently of obesity status. Journal of Thrombosis and Thrombolysis. 37:455-463.
Bewley MA, Naughton M, Preston J, Mitchell A, Holmes A, Marriott HM, Read RC, Mitchell TJ, Whyte MKB, Dockrell DH.  2014.  Pneumolysin activates macrophage lysosomal membrane permeabilization and executes apoptosis by distinct mechanisms without membrane pore formation. mBio. 5:e01710-14.
del Toro F, Fernandez FT, Tilsner J, Wright KM, Tenllado F, Chung BN, Praveen S, Canto T.  2014.  Potato virus Y HCPro localization at distinct, dynamically related and environment-influenced structures in the cell cytoplasm. Molecular Plant-Microbe Interactions. 27:1331-1343.
Hudson LN, Newbold T, Contu S, Hill SLL, Lysenko I, De Palma A, Phillips HRP, Senior RA, Bennett DJ, Booth H et al..  2014.  The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts. Ecology and Evolution. 4:4701-4735.
Velmala SM, Rajala T, Heinonsalo J, Taylor AFS, Pennanen T.  2014.  Profiling functions of ectomycorrhizal diversity and root structuring in seedlings of Norway spruce (Picea abies) with fast- and slow-growing phenotypes. New Phytologist. 201:610-622.
Bengtsson T, Weighill D, Proux-Wera E, Levander F, Resjo S, Burra DD, Moushib LI, Hedley PE, Liljeroth E, Jacobson D et al..  2014.  Proteomics and transcriptomics of BABA-induced resistance response in potato using a novel functional annotation approach. BMC Genomics. 15
Rhee YJ, Hillier S, Pendlowski H, Gadd GM.  2014.  Pyromorphite formation in a fungal biofilm community growing on lead metal. Environmental Microbiology. 16:1441-1451.
Tondelli A, Francia E, Visioni A, Comadran J, Mastrangelo AM, Akar T, Al-Yassin A, Ceccarelli S, Grando S, Benbelkacem A et al..  2014.  QTLs for barley yield adaptation to Mediterranean environments in the 'Nure' x 'Tremois' biparental population. Euphytica. 197:73-86.
Dunn SM, Sample J, Potts J, Abel C, Taylor C, Cook Y, Napier F, Vinten AJA.  2014.  Recent trends in water quality in an agricultural catchment in Eastern Scotland: elucidating the roles of hydrology and land use. Environmental Science: Processes and Impacts. 16:1659-1675.
Jones CM, Spor A, Brennan FP, Breuol MC, Bru D, Lemanceau P, Griffiths B, Hallin S, Philppot L.  2014.  Recently identified microbial guild mediates soil N2O sink capacity. Nature Climate Change. 4:801-805.
Pedersen S, Andreassen HP, Keith DA, Skarpe C, Dickman CR, Gordon IJ, Crowther MS, McArthur C.  2014.  Relationships between native small mammals and native and introduced large herbivores. Austral Ecology. 39:236-243.
Field C, Dise NB, Payne RJ, Britton AJ, Emmett BA, Helliwell RC, Hughes S, Jones L, Lees S, Leake JR et al..  2014.  The role of nitrogen deposition in widespread plant community change across semi-natural habitats. Ecosystems. 17:864-877.
Smith SW, Woodin SJ, Pakeman RJ, Johnson D, van der Wal R.  2014.  Root traits predict decomposition across a landscape-scale grazing experiment. New Phytologist. 2013:851-862.
Foereid B, Ward DS, Mahowald N, Paterson E, Lehmann J.  2014.  The sensitivity of carbon turnover in the Community Land Model to modified assumptions about soil processes. Earth Systems Dynamics. 5:211-221.
Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou RN, Steuernagel B, Gundlach H, Taudien S et al..  2014.  A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms. Plant Physiology. 164:412-423.
Muller B, Balbi S, Buchmann CM, de Sousa L, Dressler G, Groeneveld J, Klassert CJ, Bao Le Q, Millington JDA, Nolzen H et al..  2014.  Standardized and transparent model descriptionsfor agent-based models - current status and prospects. Environmental Modelling and Software. 55:156-163.
Barakate A, Higgins JD, Vivera S, Stephens J, Perry RM, Ramsay L, Colas I, Oakey H, Waugh R, Franklin FCH et al..  2014.  The synaptonemal complex protein ZYP1 is required for imposition of meiotic crossovers in barley. The Plant Cell. 26:729-740.
McDougall GJ, Conner S, Pereira-Caro G, Gonzalez-Barrio R, Brown EM, Verrall S, Stewart D, Moffet T, Ibars M, Lawther R et al..  2014.  Tracking (poly)phenol components from raspberries in ileal fluid. Journal of Agricultural and Food Chemistry. 62:7631-7641.
Elliott RM, de Roos B, Duthie SJ, Bouwman FG, Rubio-Aliaga I, Crosley LK, Mayer C, Polley AC, Heim C, Coort SL et al..  2014.  Transcriptome analysis of peripheral blood mononuclear cells in human subjects following a 36 h fast provides evidence of effects on genes regulating inflammation, apoptosis and energy metabolism. Genes and Nutrition. 9:ArticleNo.432.
Ceci A, Rhee YJ, Kierans M, Hillier S, Pendlowski H, Gray N, Persiani AM, Gadd GM.  2014.  Transformation of vanadinite (Pb5(VO4)3Cl) by fungi. Environmental Microbiology. Published online..
Babikova Z, Johnson D, Bruce TJA, Pickett JA, Gilbert L.  2014.  Underground allies: how and why do mycelial networks help plants defend themselves? BioEssays. 36:21-26.
Eley Y, Dawson LA, Black S, Andrews J, Pedentchouk N.  2014.  Understanding H-2/H-1 systematics of leaf wax n-alkanes in coastal plants at Stiffkey saltmarsh, Norfolk, UK. Geochimica et Cosmochimica Acta.. 128:13-28.
van der Jagt APN, Craig T, Anable J, Brewer MJ, Pearson DG.  2014.  Unearthing the picturesque: the validity of the preference matrix as a measure of landscape aesthetics. Landscape and Urban Planning. 124:1-13.
Pimpao RC, Dew T, Figueira ME, McDougall GJ, Stewart D, Ferreira RB, Santos CN, Williamson G.  2014.  Urinary metabolite profiling identifies novel colonic metabolites and conjugates of phenolics in healthy volunteers. Molecular Nutrition and Food Research. 58:1414-1425.
Lewis RJ, Pakeman RJ, Angus S, Marrs RH.  2014.  Using compositional and functional indicators for biodiversity conservation monitoring of semi-natural grasslands in Scotland. Biological Conservation. 175:82-93.
Brendel M, Janssen A, Mayer CD, Pauly M.  2014.  Weighted logrank permutation tests for randomly right censored life science data. Scandinavian Journal of Statistics. 41:742-761.
Puttock A, Dungait JAJ, Macleod CJA, Bol R, Brazier RE.  2014.  Woody plant encroachment into grasslands leads to accelerated erosion of previously stable organic carbon from dryland soils. Journal of Geophysical Research-Biogeosciences. 119:2345-2357.
Pritchard L, Birch PRJ.  2014.  The zigzag model of plant-microbe interactions: is it time to move on? Molecular Plant Pathology. 15:865-870.
2015
Sanchez-Marono N, Alonso-Betanzos A, Fontenla-Romero O, Brinquis-Nunez C, Polhill JG, Craig T, Dumitru A, Garcia-Mira R.  2015.  An agent-based model for simulating environmental behavior in an educational organization. Neural Processing Letters. 42:89-118.
Prager K.  2015.  Agri-environmental collaboratives as bridging organisations in landscape management. Journal of Environmental Management. 161:375-384.
Prager K.  2015.  Agri-environmental collaboratives for landscape management in Europe. Current Opinion in Environmental Sustainability. 12:59-66.
Knierim A, Boenning K, Caggiano M, Cristóvão A, Dirimanova V, Koehnen T, Labarthe P, Prager K.  2015.  The AKIS concept and its relevance in selected EU member states. Outlook on Agriculture.
Travis AJ, Norton GJ, Datta S, Sarma R, Dasgupta T, Savio FL, Macaulay M, Hedley PE, McNally KL, Sumon MH et al..  2015.  Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. Rice. 8
Grant DM, Dagleish MP, Bachofen C, Boag B, Deane D, Percival A, Zadoks RN, Russell GC.  2015.  Assessment of the rabbit as a wildlife reservoir of bovine viral diarrhea virus: serological analysis and generation of trans-placentally infected offspring. Frontiers in Microbiology. 6
Zhang RX, Calixto CPG, Tzioutziou NA, James AB, Simpson CG, Guo WB, Marquez Y, Kalyna M, Patro R, Eyras E et al..  2015.  AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist. 208:96-101.
Horgan GW, Song Y, Glasbey CA, van der Heijden GWAM, Polder G, Dieleman JA, Bink MCAM, van Eeuwijk FA.  2015.  Automated estimation of leaf area development in sweet pepper plants from image analysis. Functional Plant Biology. 42:486-492.
Dawson IK, Russell J, Powell W, Steffenson B, Thomas WTB, Waugh R.  2015.  Barley: a translational model for adaptation to climate change. New Phytologist. 206:913-931.
Martin-Fernandez JA, Hron K, Templ M, Filzmoser P, Palarea-Albaladejo J.  2015.  Bayesian-multiplicative treatment of count zeros in compositional data sets. Central European Journal of Biology. 15:134-158.
Puga AP, Abreu CA, Melo LCA, Beesley L.  2015.  Biochar application to a contaminated soil reduces the availability and plant uptake of zinc, lead and cadmium. Journal of Environmental Management. 159:86-93.
Evans DM, Altwegg R, Garner TWJ, Gompper ME, Gordon IJ, Johnson JA, Pettorelli N.  2015.  Biodiversity offsetting: what are the challenges, opportunities and research priorities for animal conservation? Animal Conservation. 18:1-3.
Yao HY, Chapman SJ, Thornton B, Paterson E.  2015.  C-13 PLFAs: a key to open the soil microbial black box? Plant and Soil. 392:3-15.
Puga AP, Abreu CA, Melo LCA, Paz-Ferreiro J, Beesley L.  2015.  Cadmium, lead, and zinc mobility and plant uptake in a mine soil amended with sugarcane straw biochar. Environmental Science and Pollution Research. 22:17606-17614.
Evans DM, Villar N, Littlewood NA, Pakeman RJ, Evans SA, Dennis P, Skartveit J, Redpath SM.  2015.  The cascading impacts of livestock grazing in upland ecosystems: a 10 year experiment. Ecosphere. 6:ArticleNo.42..
Specht A, Gordon IJ, Groves RH, Lambers H, Phinn SR.  2015.  Catalysing transdisciplinary synthesis in ecosystem science and management. Science of the Total Environment. 534:1-3.
Chapman JA, Mascher M, Buluc A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Seghal S, Oliker L et al..  2015.  Chromosome-scale assembly of the hexaploid wheat genome from whole genome shotgun sequencing. Genome Biology. 16
Wilkinson ME, Mackay E, Quinn PF, Stutter MI, Beven KJ, Macleod CJA, Macklin MG, Elkhatib Y, Percy B, Vitolo C et al..  2015.  A cloud based tool for knowledge exchange on local scale flood risk. Journal of Environmental Management. 161:38-50.
Smith SW, Johnson D, Quin SLO, Munro K, Pakeman RJ, van der Wal R, Woodin SJ.  2015.  Combination of herbivore removal and nitrogen deposition increases upland carbon storage. Global Change Biology.. 21:3036-3048.
Lee JS, Filatova T, Ligmann-Zielinska A, Hassani-Mahmooei B, Stonedahl F, Lorscheid I, Voinov A, Polhill JG, Sun Z, Parker DC.  2015.  The complexities of agent-based modeling output analysis. Journal of Artificial Societies and Social Simulation. 18:ArticleNo.4.
Sutherland LA, Peter S, Zagata L.  2015.  Conceptualising multi-regime interactions: the role of the agriculture sector in renewable energy transitions. Research Policy. 44:1543-1554.
Richards S, Paterson E, Withers PJA, Stutter MI.  2015.  The contribution of household chemicals to environmental discharges via effluents: Combining chemical and behavioural data. Journal of Environmental Management. 150:427-434.
Obidiegwu JE, Bryan GJ, Jones HG, Prashar A.  2015.  Coping with drought: stress and adaptive responses in potato and perspectives for improvement. Frontiers in Plant Science. 6:ArticleNo.542.
Hagemann N, Prager K, Bartke S.  2015.  Costs of implementing agricultural soil protection policies - insights from two German cases. Journal of Environmental Policy and Planning. 17:656-672.
Ewert F, Rotter RP, Bindi M, Webber H, Trnka M, Kersebaum KC, Olesen JE, Van Ittersum MK, Janssen S, Rivington M et al..  2015.  Crop modelling for integrated assessment of risk to food production from climate change. Environmental Modelling and Software. 72:287-303.
Powell J, Karunaratne S, Campbell CD, Yao HY, Robinson L, Singh BK.  2015.  Deterministic processes vary during community assembly for ecologically dissimilar taxa. Nature Communications. 6
Mackay EB, Wilkinson ME, Macleod CJA, Beven K, Percy BJ, Macklin MG, Quinn PF, Stutter MI, Haygarth PM.  2015.  Digital catchment observatories: a platform for engagement and knowledge exchange between catchment scientists, policy makers, and local communities. Water Resources Research. 51:4815-4822.
Michalet R, Brooker RW, Lortie CJ, Pugnaire FI.  2015.  Disentangling direct and indirect effects of a legume shrub on its understorey community. Oikos. 124:1251-1262.
Thornton B, Martin G, Procee M, Miller DR, Coull MC, Yao HY, Chapman SJ, Hudson G, Midwood AJ.  2015.  Distributions of carbon and nitrogen isotopes in Scotland's topsoil: a national-scale study. European Journal of Soil Science. 66:1002-1011.
Machell J, Prior K, Allan R, Andersen JM.  2015.  Drinking water purity - a UK perspective. Environmental Science: Water Research and Technology. 1:268-271.
Sessin-Dilascio K, Prager K, Irvine KN, de Almeida Sinisgalli PA.  2015.  The dynamics of co-management and social capital in protected area management - The Cardoso Island State Park in Brazil. World Development. 67:475-489.
Phimister E, Vera-Toscano E, Roberts D.  2015.  The dynamics of energy poverty: evidence from Spain. Economics of Energy and Environmental Policy. 4:153-166.
Phillips D, Jenkins G, Macaulay M, Nibau C, Wnetrzak J, Fallding D, Colas I, Oakey H, Waugh R, Ramsay L.  2015.  The effect of temperature on the male and female recombination landscape of barley. New Phytologist. 208:421-429.
Cerekovic N, Jarret D, Pagter M, Cullen DW, Morris JM, Hedley PE, Brennan R, Petersen KK.  2015.  The effects of drought stress on leaf gene expression during flowering in blackcurrant (Ribes nigrum L.). European Journal of Horticultural Science. 80:39-46.
Kikvidze Z, Brooker RW, Butterfield BJ, Callaway RM, Cavieres LA, Cook BJ, Lortie CJ, Michalet R, Pugnaire FI, Xiao S et al..  2015.  The effects of foundation species on community assembly: a global study on alpine cushion plant communities. Ecology. 96:2064-2069.
Parkinson N, Pritchard L, Bryant R, Toth IK, Elphinstone J.  2015.  Epidemiology of Dickeya dianthicola and Dickeya solani in ornamental hosts and potato studied using variable number tandem repeat analysis. European Journal of Plant Pathology. 141:63-70.
Wylie CE, Shaw DJ, Fordyce FM, Lilly A, Pirie S, McGorum BC.  2015.  Equine grass sickness in Scotland: a case control study of environmental geochemical risk factors. Equine Veterinary Journal. Published online..
Pourkheirandish M, Hensel G, Kilian B, Senthil N, Chen G, Sameri M, Azhaguvel P, Sakuma S, Dhanagond S, Sharma R et al..  2015.  Evolution of the seed dispersal system in barley. Cell. 162:527-539.
Polhill JG.  2015.  Extracting OWL ontologies from agent-based models: a netlogo extension. Journal of Artificial Societies and Social Simulation. 18:15.
Brierley JL, Hilton AJ, Wale SJ, Peters JC, Gladders PP, Bradshaw NJ, Ritchie F, MacKenzie K, Lees AK.  2015.  Factors affecting the development and control of black dot on potato tubers. Plant Pathology. 64:167-177.
Roberts D, Vera-Toscano E, Phimister E.  2015.  Fuel poverty in the UK: Is there a difference between rural and urban areas? Energy Policy. 87:216-223.
Matamoros MA, Saiz A, Penuelas M, Bustos-Sanmamed P, Mulet JM, Barja MV, Rouhier N, Moore M, James EK, Dietz KJ et al..  2015.  Function of glutathione peroxidases in legume root nodules. Journal of Experimental Botany. 66:2979-2990.
Ceci A, Kierans M, Hillier S, Persiani AM, Gadd GM.  2015.  Fungal bioweathering of mimetite and a general geomycological model for lead apatite mineral biotransformations. Applied and Environmental Microbiology. 81:4955-4964.
Greene S, Johnes PJ, Bloomfield JP, Reaney SM, Lawley R, Elkhatib Y, Freer J, Odoni N, Macleod CJA, Percy B.  2015.  A geospatial framework to support integrated biogeochemical modelling in the United Kingdom. Environmental Modelling and Software. 68:219-232.
Yeluripati JB, del Prado A, Sanz-Cobena A, Rees R, Li C, Chadwick D, Tilston E, Topp CFE, Cardenas L, Ingraham P et al..  2015.  Global Research Alliance Modelling Platform (GRAMP): An open web platform for modelling greenhouse gas emissions from agro-ecosystems. Computers and Electronics in Agriculture. 111:112-120.
Giordano M, Palmucci M, Raven JA.  2015.  Growth rate hypothesis and efficiency of protein synthesis under different sulphate concentrations in two green algae. Plant Cell and Environment. 38:2313-2317.
Mladkova P, Mladek J, Hejduk S, Hejcman M, Cruz P, Jouany C, Pakeman RJ.  2015.  High-nature-value grasslands have the capacity to cope with nutrient impoverishment induced by mowing and livestock grazing. Journal of Applied Ecology. 52:1073-1081.
Prager K, Nienaber B, Neumann B, Phillips A.  2015.  How should rural policy be evaluated if it aims to foster community involvement in environmental management? Journal of Rural Studies. 37:120-1`31.
Brooker RW, Bennett AE, Cong WF, Daniell TJ, George TS, Hallett PD, Hawes C, Iannetta PPM, Jones HG, Karley AJ et al..  2015.  Improving intercropping: a synthesis of research in agronomy, plant physiology and ecology. New Phytologist. 206:107-117.
Brouwer R, Martin-Ortega J, Dekker T, Sardonini L, Andreu J, Kontogianni A, Skourtos M, Raggi M, Viaggi D, Pulido-Velazquez M et al..  2015.  Improving value transfer through socio-economic adjustments in a multicountry choice experiment of water conservation alternatives. Australian Journal of Agricultural and Resource Economics. 59:458-478.
Glenk K, Martin-Ortega J, Pulido-Velazquez M, Potts J.  2015.  Inferring attribute non-attendance from discrete experiments: implications for benefit transfer. Environmental and Resource Economics. 60:497-520.
Perez-Barberia J, Ramsay SL, Hooper RJ, Perez-Fernandez E, Robertson AHJ, Aldezabal A, Goddard P, Gordon IJ.  2015.  The influence of habitat on body size and tooth wear in Scottish red deer (Cervus elaphus). Canadian Journal of Zoology. 93:61-70.
Perez-Barberia J, Ramsay SL, Hooper RJ, Perez-Fernandez E, Robertson AHJ, Aldezabal A, Goddard P, Gordon IJ.  2015.  The influence of habitat on body size and tooth wear in Scottish red deer (Cervus elaphus). (Corrigendum: vol 93, pg 61, 2015). Canadian Journal of Zoology. 93:249.
Schoeb C, Kerle S, Karley AJ, Morcillo L, Pakeman RJ, Newton AC, Brooker RW.  2015.  Intraspecific genetic diversity and composition modify species-level diversity-productivity relationships. New Phytologist. 205:720-730.
Littlewood NA, Nau BS, Pozsgai G, Stockan JA, Stubbs A, Young MR.  2015.  Invertebrate species at risk from ash dieback in the UK. Journal of Insect Conservation. 19:75-85.
Moore EK, Britton AJ, Iason GR, Pemberton JM, Pakeman RJ.  2015.  Landscape-scale vegetation patterns influence small-scale grazing impacts. Biological Conservation. 192:218-225.
Rutgers M, Orgiazzi A, Gardi C, Rombke J, Jansch S, Keith AM, Neilson R, Boag B, Schmidt O, Murchie AK et al..  2015.  Mapping earthworm communities in Europe. Applied Soil Ecology. 97:98-111.
Driver T, Bajhaiya AK, Allwood JW, Goodacre R, Pittman JK, Dean AP.  2015.  Metabolic responses of eukaryotic microalgae to environmental stress limit the ability of FT-IR spectroscopy for species identification. Algal Research- Biomass Biofuels and Bioproducts. 11:148-155.
Vanga BR, Ramakrishnan P, Butler RC, Toth IK, Ronson CW, Jacobs JME, Pitman AR.  2015.  Mobilization of horizontally acquired island 2 is induced in planta in the phytopathogen Pectobacterium atrosepticumSCRI1043 and involves the putative relaxase ECA0613 and quorum sensing. Environmental Microbiology. 17:4730-4744.
Prigigallo MI, Mosca S, Cacciola SO, Cooke DEL, Schena L.  2015.  Molecular analysis of Phytophthora diversity in nursery-grown ornamental and fruit plants. Plant Pathology. 64:1308-1319.
Wells B, Shaw H, Innocent G, Guido S, Hotchkiss E, Parigi M, Opsteegh M, Green J, Gillespie S, Innes EA et al..  2015.  Molecular detection of Toxoplasma gondii in water samples from Scotland and a comparison between the 529bp real-time PCR and ITS1 nested PCR. Water Research. 87:175-181.
Sanhueza M, Chai A, Smith C, McCray BA, Simpson TI, Taylor JP, Pennetta G.  2015.  Network analyses reveal novel aspects of ALS pathogenesis. PLoS Genetics. 11:e1005107.
Duthie SJ, Beattie JH, Gordon MJ, Pirie LP, Nicol F, Reid MD, Duncan GJ, Cantlay L, Horgan G, McNeil CJ.  2015.  Nutritional B vitamin deficiency alters the expression of key proteins associated with vascular smooth muscle cell proliferation and migration in the aorta of atherosclerotic apolipoprotein E null mice. Genes and Nutrition. 10
Oteros-Rozas E, Martín-López B, Daw TM, Bohensky E, Butler J, Hill R, Martin-Ortega J, Quinlan A, Ravera F, Ruiz-Mallén I et al..  2015.  Participatory scenario-planning in place-based social-ecological research: insights and experiences from 23 case studies. Ecology and Society. 20:ArticleNo.34.
Roberts AMI, Tansey C, Smithers RJ, Phillimore AB.  2015.  Predicting a change in the order of spring phenology in temperate forests. Global Change Biology. 21:2603-2611.
Mills AJ, van der Vyver M, Gordon IJ, Patwardhan A, Marais C, Blignaut J, Sigwela A, Kgope B.  2015.  Prescribing innovation within a large-scale restoration programme in degraded subtropical thicket in South Africa. Forests. 6:4328-4348.
Harrison PJ, Yuan Y, Buckland ST, Oedekoven CS, Elston DA, Brewer MJ, Johnston A, Pearce-Higgins JW.  2015.  Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
O'Leary GJ, Christy B, Nuttall J, Huth J, Cammarano D, Stöckle C, Basso B, Shcherbak I, Fitzgerald G, Luo Q et al..  2015.  Response of wheat growth, grain yield and water use to elevated CO2 under a Free Air CO2 Enrichment (FACE) experiment and modelling in a semi-arid environment. Global Change Biology.. 21:2670-2686.
Asseng S, Ewert F, Martre P, Rötter R, Lobell D, Cammarano D, Kimball B, Ottman M, Wall G, White JW et al..  2015.  Rising temperatures reduce global wheat production. Nature Climate Change. 5:143-147.
Plieninger T, Bieling C, Fagerholm N, Byg A, Hartel T, Hurley P, López-Santiago CA, Nagabhatla N, Oteros-Rozas E, Raymond CM et al..  2015.  The role of cultural ecosystem services in landscape management and planning. Current Opinion in Environmental Sustainability. 14:28-33.
Albert A, Auffret AG, Cosyns E, Cousins SAO, D'Hondt B, Eichberg C, Eycott AE, Heinken T, Hoffmann M, Jaroszewicz B et al..  2015.  Seed dispersal by ungulates as an ecological filter: a trait-based meta-analysis. Oikos. 124:1109-1120.
Poggio L, Gimona A.  2015.  Sequence-based mapping approach to spatio-temporal snow patterns from MODIS time-series applied to Scotland. International Journal of Applied Earth Observation and Geoinformation. 34:122-135.
Echavarri-Bravo V, Paterson L, Aspray TJ, Porter JS, Winson MK, Thornton B, Hartl MG.  2015.  Shifts in the metabolic function of benthic estuarine microbial community following a single pulse exposure to silver nanoparticles. Environmental Pollution. 201:91-99.
Pangbourne K, Roberts D.  2015.  Small towns and agriculture: understanding the spatial pattern of farm linkages. European Planning Studies. 23:494-508.
Gustavo Schlaen R, Mancini E, Sanchez SE, Perez-Santangelo S, Rugnone ML, Simpson CG, Brown JWS, Zhang X, Chernomoretz A, Yanovsky MJ.  2015.  The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112:9382-9387.
Perez-Barberia FJ, Small M, Hooper RJ, Aldezabal A, Soriguer-Escofet R, Bakken GS, Gordon IJ.  2015.  State-space modelling of the drivers of movement behaviour in sympatric species. PLoS ONE. 10:e0142707.
Roberts A, Philip L, Currie M, Mort A.  2015.  Striking a balance between in-person care and the deployment of eHealth to support the older rural population with chronic pain. International Journal of Qualitative Studies on Health and Well-Being. 10
Naz I, Saifullah, Palomares-Rius JE, Blok V, Khan SM, Ali S, Baig A.  2015.  Sustainable management of the Southern root-knot nematode, Meloidogyne incognita (Kofoid and White) Chitwood, by means of amendments of Fumaria parviflora. International Journal of Agriculture and Biology. 17:289-296.
Smith JU, Fischer A, Hallett PD, Homans HY, Smith P, Abdul-Salam Y, Emmerling HH, Phimister E.  2015.  Sustainable use of organic resources for bioenergy, food and water provision in rural Sub-Saharan Africa. Renewable and Sustainable Energy Reviews. 50:903-917.
Pirttioja N, Carter TR, Fronzek S, Bindi M, Hoffmann H, Palosuo T, Ruiz-Ramos M, Tao F, Trnka M, Acutis M et al..  2015.  Temperature and precipitation effects on wheat yield across a European transect: a crop model ensemble analysis using impact response surfaces. Climate Research. 65:87-105.
Kamoun S, Furzer O, Jones JDG, Judelson HS, Ali GS, Dalio RJD, Roy SG, Schena L, Zambounis A, Panabieres F et al..  2015.  The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.
Pakeman RJ, Karley AJ, Newton AC, Morcillo L, Brooker RW, Schob C.  2015.  A trait-based approach to crop-weed interactions. European Journal of Agronomy. 70:22-32.
Martin-Ortega J, Perni A, Jackson-Blake L, Balana BB, Dunn SM, McKee A, Helliwell RC, Psaltopoulos D, Skuras D, Cooksley S et al..  2015.  A transdisciplinary approach to the economic analysis of the European Water Framework Directive. Ecological Economics. 116:34-45.
L.iang XJ, Hillier S, Pendlowski H, Gray N, Ceci A, Gadd GM.  2015.  Uranium phosphate biomineralization by fungi. Environmental Microbiology. 17:2064-2075.
Pooley CM, Bishop SC, Marion G.  2015.  Using model-based proposals for fast parameter inference on discrete state space, continuous-time Markov processes. Journal of the Royal Society Interface. 12:ArticleNo.20150225.
Machell J, Prior K, Allan R, Andersen JM.  2015.  The water energy food nexus - challenges and emerging solutions. Environmental Science: Water Research and Technology. 1:15-16.
Perez-Barberia FJ, Carranza J, Sanchez-Prieto C.  2015.  Wear fast, die young: more worn teeth and shorter lives in Iberian compared to Scottish red deer. PLoS ONE. 10:e0134788.
Stubbs RJ, Morris L, Pallister C, Horgan G, Lavin JH.  2015.  Weight outcomes audit in 1.3 million adults during their first 3 months' attendance in a commercial weight management programme. BMC Public Health. 15
Toth IK, Humphris S, Campbell E, Pritchard L.  2015.  Why genomics research on Pectobacterium and Dickeya makes a difference. American Journal of Potato Research. 92:218-222.
Pakeman RJ, Alexander J, Beaton J, Brooker R, Cummins R, Eastwood A, Fielding D, Fisher J, Gore S, Hewison R et al..  2015.  Y Species composition of coastal dune vegetation in Scotland has proved resistant to climate change over a third of a century. Global Change Biology. 21:3738-3747.
Palarea-Albaladejo J, Martin-Fernandez JA.  2015.  zCompositions - R Package for multivariate imputation of left-censored data under a compositional approach. Chemometrics and Intelligent Laboratory Systems. 143:85-96.
2016
Horgan GW, Perrin A, Whybrow S, Macdiarmid JI.  2016.  Achieving dietary recommendations and reducing greenhouse gas emissions: modelling diets to minimise the change from current intakes. International Journal of Behavioral Nutrition and Physical Activity. 13
Ceola S, Montanari A, Krueger T, Dyer F, Kreibich H, Westerberg I, Carr G, Cudennec C, Elshorbagy A, Savenije H et al..  2016.  Adaptation of water resources systems to changing society and environment: a statement by the International Association of Hydrological Sciences. Hydrological Sciences Journal. 61:2803-2817.
Kalogiros DI, Adu MO, White PJ, Broadley MR, Draye X, Ptashnyk M, Bengough AG, Dupuy LX.  2016.  Analysis of root growth from a phenotyping data set using a density-based model. Journal of Experimental Botany. 67:1045-1058.
Kalogiros DI, Adu MO, White PJ, Broadley MR, Draye X, Ptashnyk M, Bengough AG, Dupuy LX.  2016.  Analysis of root growth from a phenotyping data set using a density-based model. Journal of Experimental Botany.. 67:1045-1058.
Paterson E, Sim A, Davidson J, Daniell TJ.  2016.  Arbuscular mycorrhizal hyphae promote priming of native soil organic matter mineralisation. Plant and Soil. Published online..
Paterson E, Sim A, Davidson J, Daniell TJ.  2016.  Arbuscular mycorrhizal hyphae promote priming of native soil organic matter mineralisation. Plant and Soil. 408:243-254.
Mwafulirwa L, Baggs EM, Russell J, George T, Morley N, Sim A, De la Fuente Canto C, Paterson E.  2016.  Barley genotype influences stabilization of rhizodeposition-derived C and soil organic matter mineralization. Soil Biology and Biochemistry. 95:60-69.
Love AJ, Yu CL, Petukhova NV, Kalinina NO, Chen JP, Taliansky ME.  2016.  Cajal bodies and their role in plant stress and disease responses. RNA Biology. 14:779-790.
Alegria Terrazas R, Giles C, Paterson E, Robertson-Albertyn S, Cesco S, Mimmo T, Pii Y, Bulgarelli D.  2016.  Chapter one - Plant-microbiota interactions as a driver of the mineral turnover in the rhizosphere. Advances in Applied Microbiology. 95:1-67.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.