Publications list

Found 168 results

Filters: Keyword is f/y 2008/09 [Clear All Filters]

2008

Du Z, Chen F, Zhao Z, Liao Q, Palukaitis P, Chen J. 2008. The 2b protein and the C-terminus of the 2a protein of Cucumber mosaic virus subgroup I strains both play a role in the viral RNA accumulation and induction of symptoms. Virology. 380:363-370. Abstract

Davies HV, Bryan GJ, Taylor MA. 2008. Advances in functional genomics and genetic modification of potato (Review). Potato Research. 51:283-299. Abstract

Marion G, Smith LA, Swain DL, Davidson RS, Hutchings MR. 2008. Agent-based modelling of foraging behaviour: the impact of spatial heterogeneity on disease risks from faeces in grazing systems. Journal of Agricultural Science. 146:507-520. Abstract

Newton AC, Hackett CA, Swanston JS. 2008. Analysing the contribution of component cultivars and cultivar combinations to malting quality, yield and disease in complex mixtures. Journal of the Science of Food and Agriculture. 88:2142-2152. Abstract

Beattie JH, Gordon MJ, Rucklidge GJ, Reid MD, Duncan GJ, Horgan GW, Cho YE, Kwun IS. 2008. Aorta protein networks in marginal and acute zinc deficiency. Proteomics. 8:2126-2135. Abstract

Obraztsova EA, Kalinina NO, Taliansky ME, Gabrenaite-Verkhovskaya R, Makinen K, Yaminsky IV. 2008. Atomic force microscopy of potato virus A.. Colloid Journal. 70:199-201. Abstract

Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Francia E, Pecchioni N, Li Destri O, Akar T et al.. 2008. Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.

Bradshaw JE. 2008. The Canon of Potato Science: 2. Population Genetics. Potato Research. 50:211-214. Abstract

Bradshaw JE. 2008. The Canon of Potato Science: 4. Tetrasomic Inheritance. Potato Research. 50:219-222. Abstract

Grenville-Briggs LJ, Anderson VL, Fugelstad J, Avrova AO, Bouzenzana J, Williams A, Wawra S, Whisson SC, Birch PRJ, Bulone V et al.. 2008. Cellulose synthesis in Phytophthora infestans is required for normal appressorium formation and successful infection of potato. Plant Cell. 20:720-738. Abstract

Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Pecchioni N, Tondelli A, Akar T, Al-Yassin A et al.. 2008. Changes in allele frequencies in landraces, old and modern barley cultivars of marker loci close to QTL for grain yield under high and low input conditions. Euphytica. 163:435-447. Abstract

Kilminster KL, Walker DI, Thompson PA, Raven JA. 2008. Changes in growth, internode distance and nutrient concentrations of the seagrass Halophila ovalis with exposure to sediment sulphide. Marine Ecology-Progress Series. 361:83-91. Abstract

Pylypenko LA, Phillips MS, Blok VC. 2008. Characterisation of two Ukrainian populations of Globodera pallida in terms of their virulence and mtDNA and the biological assessment of a new resistant cultivar Vales Everest. Nematology. 10:585-590. Abstract

Gregory PJ, Ingram JSI. 2008. Climate change and the current 'food crisis'. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 3, 090:1-10. Abstract

Ram JC, Woche SK, Bachmann J, Goebel MO, Hallett PD. 2008. Comparing capillary rise contact angles of soil aggregates and homogenised soil. Geoderma. 146:336-343. Abstract

Abecia L, Balcells J, Fondevila M, Belenguer A, Holtrop G, Lobley GE. 2008. Contribution of gut microbial lysine to liver and milk amino acids in lactating does. British Journal of Nutrition. 100:977-983.

White PCL, B M, Marion G, Hutchings MR. 2008. Control of bovine tuberculosis in British livestock: there is no 'silver bullet'. Trends in Microbiology. 16:420-427. Abstract

McDougall GJ, Kulkarni NK, Stewart D. 2008. Current developments on the inhibitory effects of berry polyphenols on digestive enzymes. Biofactors. 34:73-80. Abstract

Sneddon AA, Tsofliou F, Fyfe CL, Matheson I, Jackson DM, Horgan GW, Winzell MS, Wahle KWJ, Ahren B, Williams LM. 2008. Effect of a conjugated linoleic acid and omega-3 fatty acid mixture on body composition and adiponectin. Obesity. 16:1019-1024. Abstract

Zazzo A, Moloney AP, Monahan FJ, Scrimgeour CM, Schmidt O. 2008. Effect of age and food intake on dietary carbon turnover recorded in sheep wool. Rapid Communications in Mass Spectrometry. 22:2937-2945. Abstract

Broadley MR, White PJ, Hammond JP, Graham NS, Bowen HC, Emmerson ZF, Fray RG, Iannetta PPM, McNicol JW, May ST. 2008. Evidence of neutral transcriptome evolution in plants. New Phytologist. 180:587-593. Abstract

Raven JA, Cockell CS, de La Rocha CL. 2008. The evolution of inorganic carbon concentrating mechanisms in photosynthesis. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 363:2641-2650. Abstract

Ducreux LJM, Morris WL, Prosser IM, Morris JA, Beale MH, Wright F, Shepherd T, Bryan GJ, Hedley PE, Taylor MA. 2008. Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes. Journal of Experimental Botany. 59:4219-4231. Abstract

Clayton SJ, Read DB, Murray PJ, Gregory PJ. 2008. Exudation of alcohol and aldehyde sugars from roots of defoliated Lolium perenne L. grown under sterile conditions. Journal of Chemical Ecology. 34:1411-1421. Abstract

Meier-Augenstein W, Fraser I. 2008. Forensic isotope analysis leads to identification of a mutilated murder victim. Science and Justice. 48:153-159. Abstract

M C, Crosley LK, Nicol F, Horgan GW, Mathers JC, Arthur JR, Hesketh JE. 2008. Functional effects of a common single-nucleotide polymorphism (GPX4c718t) in the glutathione peroxidase 4 gene: Interaction with sex. American Journal of Clinical Nutrition. 87:1019-1027. Abstract

Judelson HS, Ah Fong AMV, Aux G, Avrova AO, Bruce CR, Cakir C, da Cunha L, Grenville-Briggs LJ, Latijnhouwers M, Ligterink W et al.. 2008. Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome. Molecular Plant-Microbe Interaction. 21:433-447. Abstract

Smykal P, Hybl M, Corander J, Jarkovsky J, Flavell AJ, Griga M. 2008. Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis. Theoretical and Applied Genetics. 117:413-424.

Denoys-Rothan B, Chartier P, Petit A, Gordon S, Graham J, Dolan A, Hofer M, Faedi W, Malteni M, Baruzzi G et al.. 2008. Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.

Obert B, Middlefell-Williams J, Millam S. 2008. Genetic transformation of barley microspores using anther bombardment. Biotechnology Letters. 30:945-949. Abstract

Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EGJ, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC et al.. 2008. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.

Bryan GJ, Hein I. 2008. Genomic resources and tools for gene function analysis in potato. International Journal of Plant Genomics. 2008:-216513.

Cuesta-Marcos A, Igartua E, Ciudad FJ, Codesal P, Russell JR, Molina-Cano J-L, Moralejo MA, Sz P, Gracia MP, Lasa JM et al.. 2008. Heading date QTL in a spring x winter barley cross evaluated in Mediterranean environments. Molecular Breeding. 21:455-471. Abstract

Duncan SH, Lobley GE, Holtrop G, Ince J, Johnstone AM, Louis P, Flint HJ. 2008. Human colonic microbiota associated with diet, obesity and weight loss. International Journal of Obesity. 32:1720-1724.

Lees AK, van de Graaf P, Wale S. 2008. The identification and detection of Spongospora subterranea and factors affecting infection and disease. American Journal of Potato Research. 85:247-252. Abstract

Hughes V, Bannantine JP, Denham S, Smith S, Garcia-Sanchez A, Sales J, Paustian ML, McLean K, Stevenson K. 2008. Immunogenicity of proteome-determined Mycobacterium avium subsp paratuberculosis-specific proteins in sheep with Paratuberculosis. Clinical and Vaccine Immunology. 15:1824-1833.

Grzegorczyk M, Husmeier D. 2008. Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move. Machine Learning. 71:265-305. Abstract

Raven JA, Giordano M, Beardall J. 2008. Insights into the evolution of CCMs from comparisons with other resource acquisition and assimilation processes. Physiologia Plantarum. 133:4-14. Abstract

Khu DM, Lorenzen J, Hackett CA, Love SL. 2008. Interval mapping of quantitative trait loci for corky ringspot disease resistance in a tetraploid population of potato (Solanum tuberosum subsp. tuberosum). American Journal of Potato Research. 85:129-139. Abstract

Brown JWS, Marshall DF, Echeverria M. 2008. Intronic noncoding RNAs and splicing. Trends in Plant Science. 13:335-342. Abstract

Abdullahi YA, Akunna JC, White NA, Hallett PD, Wheatley RE. 2008. Investigating the effects of anaerobic and aerobic post-treatment on quality and stability of organic fraction of municipal solid waste as soil amendment. Bioresource Technology. 99:8631-8636. Abstract

Lyons M, Cardle L, Rostoks N, Waugh R, Flavell AJ. 2008. Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome. Molecular Genetics and Genomics. 280:275-285. Abstract

Butler A, Glasbey CA. 2008. A latent Gaussian model for compositional data with zeros. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:505-520. Abstract

Whybrow S, Horgan GW, Stubbs RJ. 2008. Low-energy reporting and duration of recording period. European Journal of Clinical Nutrition. 62:1148-1150. Abstract

Solomon-Blackburn RM, Nikan J, Barker H. 2008. Mechanism of strong resistance to Potato leafroll virus infection in a clone of potato (Solanum tuberosum). Annals of Applied Biology. 152:339-347. Abstract

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW. 2008. Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract

Grzegorczyk M, Husmeier D, Edwards KD, Ghazal P, Millar AJ. 2008. Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract

Morris WL, Ducreux LJM, Bryan GJ, Taylor MA. 2008. Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.

Sharma SK, Millam S, Hedley PE, McNicol JW, Bryan GJ. 2008. Molecular regulation of somatic embryogenesis in potato: an auxin led perspective. Plant Molecular Biology. 68:185-201. Abstract

Dennis PG, Miller AJ, Clark IM, Taylor RG, Valsami-Jones E, Hirsch PR. 2008. A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract

Avrova AO, Boevink P, Young V, Grenville-Briggs LJ, van West P, Birch PRJ, Whisson SC. 2008. A novel Phytophthora infestans haustorium-specific membrane protein is requred for infection of potato. Cellular Microbiology. 10:2271-2284. Abstract

Baccini M, Bachmaier EM, Biggeri A, Boekschoten MV, Bouwman FG, Brennan L, Caesar R, Cinti S, Coort SL, Crosley K et al.. 2008. The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.

Stark LA, Taliansky ME. 2008. Old and new faces of the nucleolus. Workshop on the nucleolus and disease. EMBO Reports. 10:35-40. Abstract

Guilioni L, Jones HG, Leinonen I, Lhomme JP. 2008. On the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology. 148:1908-1912.

Birch PRJ, Boevink P, Gilroy E, Hein I, Pritchard L, Whisson SC. 2008. Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistance. Current Opinion in Plant Biology. 11:373-379. Abstract

Wang J, Zhang X, Bengough AG, Crawford JW. 2008. Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation. International Journal of Numerical Methods for Heat & Fluid Flow. 18:656-672. Abstract

Chapman SN, Faulkner C, Kaiserli E, Garcia-Mata C, Savenkov EI, Roberts AG, Oparka KJ, Christie JM. 2008. The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection. Proceedings of the National Academy of Sciences, USA. 105:20038-20043. Abstract

van Poppel PMJA, Guo J, van de Vondervoort PJI, Jung MWM, Birch PRJ, Whisson SC, Govers F. 2008. The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector. Molecular Plant-Microbe Interactions. 21:1460-1470. Abstract

Mostowfizadeh-Ghalamfarsa R, Cooke DEL, Banihashemi Z. 2008. Phytophthora parsiana sp. nov., a new high-temperature tolerant species. Mycological Research. 112:783-794. Abstract

Palukaitis P, Carr JP. 2008. Plant resistance responses to viruses. Journal of Plant Pathology. 90:153-171.

Harrison BD. 2008. Plant virology in the 20th century. Phytopathology. 98, Supplement:S193-S194. Abstract

Grouffaud S, van West P, Avrova AO, Birch PRJ, Whisson SC. 2008. Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans. Microbiology. 154:3743-3751. Abstract

Vassilakos N, Bem F, Tzima A, Barker H, Reavy B, Karanastasi E, Robinson DJ. 2008. Resistance of transgenic tobacco plants incorporating the putative 57-kDa polymerase read-through gene of Tobacco rattle virus against rub-inoculated and nematode-transmitted virus. Transgenic Research. 17:929-941. Abstract

Iglesias-Rodriguez MD, Buitenhuis ET, Raven JA, Schofield O, Poulton AJ, Gibbs S, Halloran PR, de Baar HJW. 2008. Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.

Nart P, Naylor SW, Huntley JF, McKendrick IJ, Gally DL, Low JC. 2008. Responses of cattle to gastrointestinal colonization by Escherichia coli O157:H7. Infection and Immunity. 76:5366-5372. Abstract

Brown JWS, Shaw PJ. 2008. The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.

Jones MR, Raven JA, Leith ID, Cape JN, Smith RI, Fowler D. 2008. Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology. 148:893-901. Abstract

Mahmood-ul-Hassan M, Akhtar MS, Gregory PJ. 2008. Solute movement through intact columns of cryoturbated Upper Chalk. Hydrological Processes. 22:2086-2093. Abstract

Glasbey CA, Allcroft DJ. 2008. A spatiotemporal auto-regressive moving average model for solar radiation. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:343-355. Abstract

Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D et al.. 2008. The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract

Chichkova NV, Galiullina RA, Taliansky ME, Vartapetian AB. 2008. Tissue disruption activates a plant caspase-like protease with TATD cleavage specificity. Plant Stress. 2:89-95. Abstract

McDougall GJ, Martinussen I, Stewart D. 2008. Towards fruitful metabolomics: High throughput analyses of polyphenol composition in berries using direct infusion mass spectrometry. Journal of Chromatography B. 871:362-369. Abstract

Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WTB, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A et al.. 2008. Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork. BMC Genetics. 9:-73. Abstract

Raven JA. 2008. Transpiration: how many functions? New Phytologist. 179:905-908. Abstract

Simpson CG, Brown JWS. 2008. U12-dependent intron splicing in plants. Current Topics in Microbiology and Immunology. 326:61-82.

Schena L, Cardle L, Cooke DEL. 2008. Use of genome sequence data in the design and testing of SSR markers for Phytophthora species. BMC Genomics. 9:620-643. Abstract

Titlyanov EA, Kiyashko SI, Titlyanova TV, Kalita TL, Raven JA. 2008. δ13C and δ15N values in reef corals Porites lutea and P. cylindrica and in their epilithic and endolithic algae. Marine Biology. 155:353-361. Abstract

2009

Beardall J, Allen D, Bragg J, Finkel ZV, Flynn KJ, Quigg A, Rees TAV, Richardson A, Raven JA. 2009. Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton. New Phytologist. 181:295-309.

McDougall GJ, Kulkarni NN, Stewart D. 2009. Berry polyphenols inhbit pancreatic lipase actvity in vitro. Food Chemistry. 115:193-199. Abstract

Bowen SR, Gregorich EG, Hopkins DW. 2009. Biochemical properties and biodegradation of dissolved organic matter from soils. Biology and Fertility of Soils. 45:733-742. Abstract

White PJ, Broadley MR. 2009. Biofortification of crops with seven mineral elements often lacking in human diets - iron, zinc, copper, calcium, magnesium, selenium and iodine (Review). New Phytologist. 182:49-84. Abstract

Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, Dalko A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B et al.. 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.

Peter KA, Gildow FE, Palukaitis P, Gray SM. 2009. The C-terminus of the Polerovirus P5 readthrough domain limits virus infection to the phloem. Journal of Virology. 83:5419-5429. Abstract

Hillier J, Hawes C, Squire GR, Hilton A, Wale S, Smith P. 2009. The carbon footprints of food crop production. International Journal of Agicultural Sustainability. 7:107-118.

Koza A, Hallett PD, Moon CD, Spiers AJ. 2009. Characterisation of a novel air-liquid interface biofilm of Pseudomonas fluorescens SBW25. Microbiology. 155:1397-1406.

Schreiber AWJ, Sutton T, Caldo RA, Kalashyan E, Lovell B, Mayo G, Muehlbauer G, Druka A, Waugh R, Wise RP et al.. 2009. Comparative transcriptomics in the Triticeae. BMC Genomics. 10:-285. Abstract

Tilston EL, Szili-Kov T, Hopkins DW. 2009. Contributions of labile and resistant organic materials to the immobilization of inorganic soil N when used in the restoration of abandoned agricultural fields. Soil Use and Management. 25:168-174. Abstract

Squire GR, Hawes C, Begg GS, Young MW. 2009. Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract

McKenzie BM, Bengough AG, Hallett PD, Thomas WTB, Forster BP, McNicol JW. 2009. Deep rooting and drought screening of cereal crops: A novel field-based method and its application.. Field Crops Research. 112:165-171. Abstract

White PJ. 2009. Depolarisation-activated calcium channels shape the calcium signatures induced by low-temperature stress. New Phytologist. 183:6-8.

Stokes A, Atger C, Bengough AG, Fourcaud T, Sidle RC. 2009. Desirable plant root traits for protecting natural and engineered slopes against landslides (Invited review). Plant and Soil. 324:1-30.

Brennan RM, Jorgensen L, Gordon SL, Loades K, Hackett CA, Russell JR. 2009. The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae). Theoretical and Applied Genetics. 118:205-211. Abstract

Barr P, McKenzie BM, Hallett PD. 2009. Earthworms bring compacted and loose soils to a similar mechanical state. Soil Biology & Biochemistry. 41:656-658. Abstract

Yang D, Zhang T, Zhang K, Greenwood DJ, Hammond JP, White PJ. 2009. An easily implemented agro-hydrological procedure with dynamic root simulation for water transfer in the crop-soil system: Validation and application. Journal of Hydrology. 370:177-190. Abstract

Wookey PA, Aerts R, Bardgett RD, Baptist F, Brathan KA, Cornelissen JHC, Gough L, Hartley IP, Hopkins DW, Lavorerl S et al.. 2009. Ecosystem feedbacks and cascade processes: understanding their role in the responses of Arctic and alpine ecosystems to environmental change. Global Change Biology. 15:1153-1172. Abstract

Gregory AS, Watts CW, Griffiths BS, Hallett PD, Kuan HL, Whitmore AP. 2009. The effect of long-term soil management on the physical and biological resilience of a range of arable and grassland soils in England. Geoderma. 153:172-185.

Wojciechowski T, Gooding MJ, Ramsay L, Gregory PJ. 2009. The effects of dwarfing genes on seedling root growth of wheat. Journal of Experimental Botany. 60:2565-2573.

Newton AC, Guy DC. 2009. The effects of uneven patchy cultivar mixtures on disease control and yield in winter barley. Field Crops Research. 110:225-228. Abstract

Kassim A, Poette J, Paterson A, Zait D, McCallum S, Woodhead M, Smith K, Hackett CA, Graham J. 2009. Environmental and seasonal influences on red raspberry anthocyanin antioxidant contents and identification of quantitative traits loci (QTL). Molecular Nutrition and Food Research. 53:625-634. Abstract

Ashman MR, Hallett PD, Brookes PC, Allen J. 2009. Evaluating soil stabilisation by biological processes using step-wise aggregate fractionation. Soil and Tillage Research. 102:209-215.

Thiel T, Graner A, Waugh R, Grosse I, Close TJ, Stein N. 2009. Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. BMC Evolutionary Biology. 9:-209.

George TS, Richardson AE, Li SM, Gregory PJ, Daniell TJ. 2009. Extracellular release of a heterologous phytase from roots of transgenic plants: does manipulation of rhizosphere biochemistry impact microbial community structure? FEMS Microbiology Ecology. 70:433-445. Abstract

Al-Mrabeh A, Ziegler A, Cowan GH, Torrance L. 2009. A fully recombinant ELISA using in vivo biotinylated antibody fragments for the detection of Potato leaf roll virus. Journal of Virological Methods. 159:200-205.

MacFarlane SA, McGavin WJ. 2009. Genome activation by Raspberry bushy dwarf virus coat protein. Journal of General Virology. 90:747-753.

Jones JT, Kumar A, Pylypenko LA, Thirugnanasambandam A, Castelli L, Chapman S, Cock PJA, Grenier E, Lilley CJ, Phillips MS et al.. 2009. Identification and functional characterisation of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida. Molecular Plant Pathology. 10:815-828.

Gregory PJ, Johnson SN, Newton AC, Ingram JSI. 2009. Integrating pests and pathogens into the climate change/food security debate. Journal of Experimental Botany. 60:2827-2838. Abstract

Schulte D, Close TJ, Graner A, Langridge P, Matsumoto T, Muehlbauer GJ, Sato K, Schulman AH, Waugh R, Wise RP et al.. 2009. International Barley Sequencing Consortium - at the threshold of efficient access to the barley genome. Plant Physiology. 149:142-147. Abstract

Mahajan A, Currie CG, Mackie S, Tree J, McAteer S, McKendrick I, McNeilly TN, Roe A, La Ragione RM, Woodward MJ et al.. 2009. An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157:H7 with bovine intestinal epithelium. Cellular Microbiology. 11:121-137.

Hopkins DW, Sparrow AD, Gregorich EG, Elberling B, Novis P, Fraser F, Scrimgeour CM, Dennis PG, Meier-Augenstein W, Greenfield LG. 2009. Isotopic evidence for the provenance and turnover of organic carbon by soil microorganisms in the Antarctic dry valleys. Environmental Microbiology. 11:597-608. Abstract

Opik M, Metsis M, Daniell TJ, Zobel M, Moora M. 2009. Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytologist. 184:424-437.

Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ. 2009. Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.

Braga RA, Dupuy L, Pasqual M, Cardoso RR. 2009. Live biospeckle laser imaging of root tissues. European Biophysics Journal. 38:679-686. Abstract

Graham J, Hackett CA, Smith K, Woodhead M, Hein I, McCallum S. 2009. Mapping QTLs for developmental traits in raspberry from bud break to ripe fruit. Theoretical and Applied Genetics. 118:1143-1155. Abstract

Hargreaves CE, Gregory PJ, Bengough AG. 2009. Measuring root traits in barley (Hordeum vulgare ssp. vulgare and ssp. spontaneum) seedlings using gel chambers, soil sacs and x-ray microtomography. Plant and Soil. 316:285-297.

Pritchard L, Liu H, Booth C, Douglas E, Fran P, Schrenzel J, Hedley PE, Birch PRJ, Toth IK. 2009. Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.

Karley AJ, White PJ. 2009. Moving cationic minerals to edible tissues: potassium, magnesium, calcium (Review). Current Opinion in Plant Biology. 12:291-298. Abstract

Meier-Augenstein W, Kemp HF, Lock CM. 2009. N2: A potential pitfall for bulk 2H isotope analysis of explosives and other nitrogen-rich compounds by continuous-flow isotope-ratio mass spectrometry. Rapid Communications in Mass Spectrometry. 23:2011-2016.

Graham J, Woodhead M, Smith K, Russell JR, Marshall B, Ramsay G, Squire GR. 2009. New insight into wild red raspberry populations using simple sequence repeat markers. Journal of the American Society for Horticultural Science. 134:109-119. Abstract

Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA. 2009. No evidence for compensatory thermal adaptation of soil microbial respiration in the study of Bradford et al. (2008). Ecology Letters. 12:E12-E14.

Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA. 2009. A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract

Comadran J, Thomas WTB, van Eeuwijk FA, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A, Benbelkacem A et al.. 2009. Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.

Bradshaw JE. 2009. Potato breeding at the Scottish Plant Breeding Station and the Scottish Crop Research Institute: 1920-2008 (Invited Review). Potato Research. 52:141-172.

Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD. 2009. Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.

Brierley JL, Stewart JA, Lees AK. 2009. Quantifying potato pathogen DNA in soil. Applied Soil Ecology. 41:234-238.

Marshall B, Newton AC, Zhan J. 2009. Quantitative evolution of aggressiveness of powdery mildew under two-cultivar barley mixtures. Plant Pathology. 58:378-388. Abstract

Barnett CM, Bengough AG, McKenzie BM. 2009. Quantitative image analysis of earthworm-mediated soil displacement. Biology and Fertility of Soils. 45:821-828.

Hancock RD. 2009. Recent patents on vitamin C: Opportunities for crop improvement and single-step biological manufacture. Recent Patents on Food, Nutrition and Agriculture. 1:39-49. Abstract

Barr P, Hallett PD. 2009. Rheological stabilisation of wet soils by model root and fungal exudates depends on clay mineralogy. European Journal of Soil Science. 60:525-538. Abstract

Hinsinger P, Bengough AG, Vetterlein D, Young IM. 2009. Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.

Rosso MN, Jones JT, Abad P. 2009. RNAi and functional genomics in plant parasitic nematodes. Annual Review of Phytopathology. 47:207-232.

Lewsey M, Surette M, Robertson FC, Ziebell H, Choi SH, Ryu KH, Canto T, Palukaitis P, Payne T, Walsh JA et al.. 2009. The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant-Microbe Interactions. 22:642-654. Abstract

McGavin WJ, MacFarlane SA. 2009. Rubus chlorotic mottle virus, a new Sobemovirus infecting raspberry and bramble. Virus Research. 139:10-13. Abstract

Crampton BG, Hein I, Berger DK. 2009. Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.

Hammond JP, Broadley MR, White PJ, King GJ, Bowen HC, Hayden R, Meacham MC, Mead A, Overs T, Spracklen WP et al.. 2009. Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.

Maestre FT, Bowker M, Puche MD, Bowker M, Hinojosa MB, Mart I, Garc P, Castillo AP, Soliveres S, Luzuriaga AL et al.. 2009. Shrub encroachment can reverse desertification in semi-arid Mediterranean grasslands. Ecology Letters. 12:930-941. Abstract

Bradshaw JE, Titley M, Wilson RN. 2009. Single seed descent as a breeding method for swedes (Brassica napus L. var. napobrassica Peterm). Euphytica. 169:387-401.

McKenzie BM, K S, MacKenzie K, Peth S, Horn R. 2009. Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.

Garc R, Ochoa V, Vi B, Hinojosa MB, Pe R, Li G, Linares JC, Carreira JA. 2009. Soil enzymes, nematode community and selected physico-chemical properties as soil quality indicators in organic and conventional olive oil farming: influence of seasonality and site features. Applied Soil Ecology. 41:305-314. Abstract

Shi B-J, Symons RH, Palukaitis P. 2009. Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus. Virus Research. 140:216-221. Abstract

Neumann G, George TS, Plassard C. 2009. Strategies and methods for studying the rhizosphere - the plant science toolbox. Plant and SoilPlant and Soil. 321:431-456.

Tyler A, Hunter PD, Carvalho L, Codd GA, Elliott JA, Ferguson CA, Hanley ND, Hopkins DW, Maberly SC, Mearns KJ et al.. 2009. Strategies for monitoring and managing mass populations of toxic cyanobacteria in recreational waters: A multi-interdisciplinary approach. Environmental Health. 8 Supplement 1:-S11.

Weaver J, Briscoe T, Hou M, Goodman C, Kata S, Ross HA, McDougall GJ, Stewart D, Riches A. 2009. Strawberry polyphenols are equally cytotoxic to tumourigenic and normal human breast and prostate cell lines. International Journal of Oncology. 34:777-786.

Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F. 2009. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics. 25:126-127.

Margaritopoulos JT, Kasprowicz L, Malloch GL, Fenton B. 2009. Tracking the global dispersal of a cosmopolitan insect pest, the peach potato aphid. BMC Ecology. 9:-13. Abstract

Foito A, Byrne SL, Shepherd T, Stewart D, Barth S. 2009. Transcriptional and metabolic profiles of Lolium perenne L. genotypes in response to a PEG induced water stress. Plant Biotechnology Journal. 7:719-732.

Potokina E, Druka A, Luo ZW, Waugh R, Kearsey MJ. 2009. The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.

van Dijk JP, Cankar K, Scheffer SJ, Beenen HGJ, Shepherd LVT, Stewart D, Davies HV, Wilcockson SJ, Leifert C, Gruden K et al.. 2009. Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract

Bahar B, Moloney AP, Monahan FJ, Harrison SM, Zazzo A, Scrimgeour CM, Begley IS, Schmidt O. 2009. Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.

Glasbey CA. 2009. Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.

Torrance L, Lukhovitskaya NI, Schepetilnikov MV, Cowan GH, Ziegler A, Savenkov EI. 2009. Unusual long-distance movement strategies of Potato mop-top virus RNAs in Nicotiana benthamiana. Molecular Plant-Microbe Interactions. 22:381-390.

Davidson RS, Marion G, White PCL, Hutchings MR. 2009. Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.

Swanson MM, Fraser G, Daniell TJ, Torrance L, Gregory PJ, Taliansky ME. 2009. Viruses in soils: morphological diversity and abundance in the rhizosphere. Annals of Applied Biology. 155:51-60. Abstract

2010

Titlyanov EA, Kiyashko SI, Titlyanova TV, Raven JA. 2010. δ13C and δ15N in tissue of coral polyps and epilithic algae inhabiting damaged coral colonies under the influence of different light intensities. Aquatic Ecology. 44:13-21.

Walker PG, Viola R, Woodhead M, Jorgensen L, Gordon SL, Brennan RM, Hancock RD. 2010. Ascorbic acid content of blackcurrant fruit is influenced by both genetic and enviromental factors. Functional Plant Science and Biotechnology. 4:40-52.

Whitson J, McDougall GJ, Ross HA, Lund VA, Hamilton CA, Dominiczak AF, Stewart D. 2010. Bioactive berry components: Potential modulators of health benefits. Functional Plant Science and Biotechnology. 4:34-38.

Foereid B, Bellarby J, Meier-Augenstein W, Kemp HF. 2010. Does light exposure make plant litter more degradable? Plant and Soil. 333:275-285.

Dupuy L, Vignes M, McKenzie BM, White PJ. 2010. The dynamics of root meristem distribution in the soil. Plant Cell and Environment. 33:358-369.

McDougall GJ, Dobson P, Jordan-Mahy N. 2010. Effect of different cooking regimes on rhubarb polyphenols. Food Chemistry. 119:758-764.

Roberts TJ, McKenna SJ, Du CJ, Wuyts N, Valentine TA, Bengough AG. 2010. Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images. Machine Vision and Applications. 21:921-939.

Elia M, Swanston JS, Moralejo MA, Casas AM, P AM, Ciudad FJ, Thomas WTB, Smith PL, Ullrich SE, Molina-Cano J-L. 2010. A model of the genetic differences in malting quality between European and North American barley cultivars based on a QTL study of the cross Triumph x Morex. Plant Breeding. 129:280-290.

Hinojosa MB, Carreira JA, Garc R, Rodr JM, Daniell TJ, Griffiths BS. 2010. Plant treatment, pollutant load and soil type effects in the rhizosphere ecology of trace element polluted soils. Ecotoxicology and Environmental Safety. 73:970-981. Abstract

Loades KW, Bengough AG, Bransby MF, Hallett PD. 2010. Planting density influence on fibrous root reinforcement of soils. Ecological Engineering. 36:276-284. Abstract

Vollsnes A, Futsaether CM, Bengough AG. 2010. Quantifying rhizosphere particle movement around mutant maize roots using time-lapse imaging and particle image velocimetry. European Journal of Soil Science. 61:926-939.

Davies HV. 2010. The role of 'omics' technologies in food safety assessment. Food Control. 21:1601-1610.

Kuiper HA, Davies HV. 2010. The SAFE FOODS risk analysis framework suitable for GMOs? A case study. Food Control. 21:1662-1676.

Praveen S, Ramesh SV, Mishra AK, Koundal V, Palukaitis P. 2010. Silencing potential of viral-derived RNAi constructs in Tomato leaf curl virus-AC4 gene suppression in tomato. Transgenic Research. 19:45-55.

Bingham IJ, Bengough AG, Rees RM. 2010. Soil compaction - N interactions in barley: Root growth and tissue composition. Soil and Tillage Research. 106:241-246.

Henton E, Meier-Augenstein W, Kemp HF. 2010. The use of oxygen isotopes in sheep molars to investigate past herding practices at the neolithic settlement of . Archaeometry. 52:429-449. Abstract