Publications list
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No evidence for compensatory thermal adaptation of soil microbial respiration in the study of Bradford et al. (2008). Ecology Letters. 12:E12-E14.
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2009.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
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2009.
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2009.
A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract
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2009.
Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
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2009.
Phagotrophy in the origins of photosynthesis in eukaryotes and as a complementary mode of nutrition in phototrophs: relation to Darwin's insectivorous plants. Journal of Experimental Botany. 60:3975-3987.
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2009.
Plant mechanisms to optimise access to soil phosphorus. Crop and Pasture Science. 60:124-143.
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2009.
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2009.
Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
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2009.
Predicting alcohol yield from UK soft winter wheat for grain distilling: combined influence of hardness and nitrogen measurements. Journal of the Institute of Brewing. 115:183-190.
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Quantifying potato pathogen DNA in soil. Applied Soil Ecology. 41:234-238.
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2009.
Quantitative evolution of aggressiveness of powdery mildew under two-cultivar barley mixtures. Plant Pathology. 58:378-388. Abstract
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2009.
Quantitative image analysis of earthworm-mediated soil displacement. Biology and Fertility of Soils. 45:821-828.
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2009.
A quantitative polymerase chain reaction assay for the detection of Polyscytalum pustulans, the cause of skin spot disease of potato. Journal of Phytopathology. 157:154-158. Abstract
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2009.
Reappraising the role of plant nutrients as mediators of interactions between root- and foliar-feeding insects. Functional Ecology. 23:699-706. Abstract
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2009.
Recent patents on vitamin C: Opportunities for crop improvement and single-step biological manufacture. Recent Patents on Food, Nutrition and Agriculture. 1:39-49. Abstract
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2009.
Reconstruction of monocotyledonous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences, USA. 106:14908-14913.
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2009.
Relationships between yield and mineral concentrations in potato tubers. Hortscience. 44:6-11. Abstract
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2009.
Reversible jump and the label switching problem in hidden Markov models. Journal of Statistical Planning and Inference. 139:2305-2315.
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2009.
Rheological stabilisation of wet soils by model root and fungal exudates depends on clay mineralogy. European Journal of Soil Science. 60:525-538. Abstract
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2009.
Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.
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2009.
Rice responses to soil management in rice-based cropping system in the semi-arid tropics of southern Lombok, Eastern Indonesia. Field Crops Research. 110:197-206. Abstract
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2009.
RNAi and functional genomics in plant parasitic nematodes. Annual Review of Phytopathology. 47:207-232.
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2009.
Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Computational Biology. 5:-e1000317.
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2009.
The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant-Microbe Interactions. 22:642-654. Abstract
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2009.
The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology. 257:696-703.
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2009.
Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
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2009.
Rubus chlorotic mottle virus, a new Sobemovirus infecting raspberry and bramble. Virus Research. 139:10-13. Abstract
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2009.
Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
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2009.
Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.
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2009.
Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
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2009.
Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.
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2009.
Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.
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2009.
Shrub encroachment can reverse desertification in semi-arid Mediterranean grasslands. Ecology Letters. 12:930-941. Abstract
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2009.
Single seed descent as a breeding method for swedes (Brassica napus L. var. napobrassica Peterm). Euphytica. 169:387-401.
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2009.
Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.
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The sources of phosphorus in the waters of Great Britain. Journal of Environmental Quality. 38:13-26. Abstract
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2009.
Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
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2009.
Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
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2009.
Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus. Virus Research. 140:216-221. Abstract
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2009.
Stable isotope analysis of white paints and likelihood ratios. Science and Justice. 49:114-119. Abstract
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2009.
Strategies and methods for studying the rhizosphere - the plant science toolbox. Plant and SoilPlant and Soil. 321:431-456.
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2009.
Strategies for monitoring and managing mass populations of toxic cyanobacteria in recreational waters: A multi-interdisciplinary approach. Environmental Health. 8 Supplement 1:-S11.
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2009.
Strawberry polyphenols are equally cytotoxic to tumourigenic and normal human breast and prostate cell lines. International Journal of Oncology. 34:777-786.
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2009.
The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.
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2009.
Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.
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2009.
Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
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2009.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
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2009.
Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
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2009.
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2009.
Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
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2009.
Transcriptional and metabolic profiles of Lolium perenne L. genotypes in response to a PEG induced water stress. Plant Biotechnology Journal. 7:719-732.
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2009.
The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
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2009.
Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract
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2009.
Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
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2009.
Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
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2009.
Unusual long-distance movement strategies of Potato mop-top virus RNAs in Nicotiana benthamiana. Molecular Plant-Microbe Interactions. 22:381-390.
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2009.
Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
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2009.
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2009.
Viruses in soils: morphological diversity and abundance in the rhizosphere. Annals of Applied Biology. 155:51-60. Abstract
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2009.
The zig-zag-zig in oomycete-plant interactions. Molecular Plant Pathology. 10:547-562.
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2009.
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2010.
Advances in imaging RNA in plants. Trends in Plant Science. 15:196-203.
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2010.
African legumes: A vital but under-utilised resource. Journal of Experimental Botany. 61:1257-1265.
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2010.
Ambiguous genetic relationships among coconut (Cocos nucifera L.) cultivars: the effects of outcrossing, sample source and size, and method of analysis. Genetic Resources and Crop Evolution. 57:203-217.
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2010.
Analysis of anthocyanin composition and content contained from grains of the Korean purple rice varieties by liquid chromatography with diode array detection and electrospray ionization/mass spectrometry (LC-DAD-ESI/MS). Korean Journal of International Agriculture. 22:267-272.
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2010.
Analysis of meiosis and cell cycle genes of the facultatively asexual pea aphid, Acyrthosiphon pisum (Hemiptera: Aphididae). Insect Molecular Biology. 19 Supplement s2:229-239.
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2010.
Ancient class of translocated oomycete effectors targets the host nucleus. Proceedings of the National Academy of Sciences, USA. 107:17421-17426.
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2010.
Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13:523-525.
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2010.
Antioxidant and antiproliferative properties of strawberry tree tissues. Journal of Berry Research. 1:3-12.
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2010.
Antioxidant properties and neuroprotective capacity of strawberry tree fruit (Arbutus unedo). Nutrients. 2:214-229.
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2010.
Arable plant communities as indicators of farming practice. Agriculture, Ecosystems and Environment. 138:17-26.
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2010.
Ascorbic acid content of blackcurrant fruit is influenced by both genetic and enviromental factors. Functional Plant Science and Biotechnology. 4:40-52.
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2010.
Assessing beef carcass tissue weights using computed tomography spirals of primal cuts. Meat Science. 84:30-38.
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2010.
Assessing virulence of vaccine strains of Mycobacterium avium subspecies paratuberculosis in a calf model. Veterinary Microbiology. 146:63-69.
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2010.
Automated saccharification assay for determination of digestibility in plant materials. Biotechnology for Biofuels. 3:-23.
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2010.
BacA is essential for bacteroid development in nodules of galegoid, but not phaseoloid, legumes. Journal of Bacteriology. 192:2920-2928.
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2010.
BAX INHIBITOR-1 is required for full susceptibility of barley to powdery mildew. Molecular Plant-Microbe Interactions. 23:1217-1227.
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2010.
Bayesian analysis of multivariate Gaussian hidden Markov models with an unknown number of regimes. Journal of Time Series Analysis. 31:1-11.
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2010.
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2010.
Below-ground herbivory and root toughness: a potential model system using lignin-modified tobacco. Physiological Entomology. 35:186-191. Abstract
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2010.
Bioactive berry components: Potential modulators of health benefits. Functional Plant Science and Biotechnology. 4:34-38.
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2010.
Biohydrology: coupling biology and soil hydrology from pores to landscapes preface. Ecohydrology. 3:379-381.
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2010.
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2010.
A Brassica exon array for whole-transcript gene expression profiling. PLoS One. 5:-e12812.
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2010.
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2010.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
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2010.
Can water droplets on leaves cause leaft scorch? New Phytologist. 185:865-867.
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2010.
Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.). BMC Plant Biology. 10:-202.
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2010.
Centrifuge modelling of soil slopes reinforced with vegetation. Canadian Geotechnical Journal. 47:1415-1430.
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2010.
Cereal landraces for sustainable agriculture. A review (Review). Agronomy for Sustainable Development. 30:237-269.
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2010.
Cereal variety identification using MALDI-TOF mass spectrometry SNP genotyping. Journal of Cereal Science. 52:356-361.
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2010.
Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.
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2010.
Characterization of the interactions between Cucumber mosaic virus and Potato virus Y in mixed infections in tomato. Molecular Plant-Microbe Interactions. 23:1514-1524.
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2010.
Chemical characterization of microbial-dominated soil organic matter in the Garwood Valley, Antarctica. Geochimica et Cosmochimica Acta. 74:6485-6498.
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2010.
Closure threat to key museum research facility. Nature. 465:-1005.
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2010.
Combining plant resistance and a natural enemy to control Amphorophora idaei. BioControl. 55:321-327.
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2010.
A comparison of molecular methods for monitoring soil nematodes and their use as biological indicators. European Journal of Soil Science. 46:319-324.
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2010.
Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.
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2010.
Competition for land. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 365:2941-2957.
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2010.
The complete sequence of a UK strain of Black raspberry necrosis virus. Archives of Virology. 155:1897-1899.
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2010.
Coordination of plant cell division and expansion in a simple morphogenetic system. Proceedings of the National Academy of Sciences, USA. 107:2711-2716.
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2010.
A critical review of current methods in earthworm ecology: From individuals to populations (Review). European Journal of Soil Biology. 46:67-73.
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2010.
Cucumber mosaic virus 2b protein subcellular targets and interactions: Their significance to RNA silencing suppressor activity. Molecular Plant-Microbe Interactions. 23:294-303.
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2010.
Cyanotoxins: A poison that frees phosphate. Current Biology. 20:R850-R852.
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2010.
The dark side of the mycorrhiza. Plant Signaling & Behavior. 5:1019-1021.
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2010.
The demography of feral alfalfa (Medicago sativa L.) populations occurring in road side habitats in southern Manitoba Canada: Implications for novel trait confinement. Environmental Science and Pollution Research. 17:1448-1459.
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2010.
Detection of lactobacillic acid in low erucic rapeseed oil - A note of caution when quantifying cyclic fatty acid monomers in vegetable oils. Chemistry and Physics of Lipids. 163:698-702.
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2010.
Developing a reliable strategy to infer the effective soil hydraulic properties from field evaporation experiments for agro-hydrological models. Agricultural Water Management. 97:399-409.
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2010.
Development and quality of cloudberry (Rubus chamaemorus L) as affected by female parent, male parent and temperature. Journal of Berry Research. 1:91-101.
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2010.
Development of a molecular cytogenetic recombination assay for barley. Cytogenetic and Genome Research. 129:154-161.
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2010.
Development of diagnostic markers for use in breeding potatoes resistance to Globodera pallida pathotype Pa2/3 using germplasm derived from Solanum tuberosum ssp. andigena CPC 2802. Theoretical and Applied Genetics. 120:679-689.
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2010.
Development of retrotransposon-based SSAP molecular marker system for study of genetic diversity in sea holly (Eryngium maritimum L.). Plant Genetic Resources - Characterization and Utilization. 8:258-266.
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2010.
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2010.
Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.
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2010.
Discerning intra-tuber differences in textural properties in cooked Solanum tuberosum group Tuberosum and group Phureja tubers. Journal of the Science of Food and Agriculture. 90:1527-1532.
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2010.
Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environmental Microbiology. 12:304-314.
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2010.
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2010.
Does light exposure make plant litter more degradable? Plant and Soil. 333:275-285.
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2010.
Does microbial habitat or community structure drive the functional stability of microbes to stresses following re-vegetation of a severely degraded soil? Soil Biology and Biochemistry. 42:850-859.
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2010.
The dynamics of root meristem distribution in the soil. Plant Cell and Environment. 33:358-369.
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2010.
Eats roots and leaves. Can edible horticultural crops address dietary calcium, magnesium and potassium deficiencies? Proceedings of the Nutrition Society. 69:601-612.
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2010.
Effect of different cooking regimes on rhubarb polyphenols. Food Chemistry. 119:758-764.
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2010.
Effect of increased consumption of whole-grain foods on blood pressure and other cardiovascular risk markers in healthy middle-aged persons: a randomised controlled trial. American Journal of Clinical Nutrition. 94:733-740.
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2010.
Effect of method of conservation of timothy on endogenous nitrogen flows in lactating dairy cows. Journal of Dairy Science. 93:4252-4261.
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2010.
Effect of salinity on water relations of wild barley plants differing in salt tolerance. AoB Plants. :-plq006.
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2010.
Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data. Theoretical and Applied Genetics. 120:1525-1534.
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2010.
Effects of group composition on the grazing behaviour of herbivores. Animal Behaviour. 80:527-534.
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2010.
Effects of soil conditions and drought on egg hatching and larval survival of the clover root weevil (Sitona lepidus). Applied Soil Ecology. 44:75-79.
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2010.
An efficient procedure for normalising ionomics data for Arabidopsis thaliana. New Phytologist. 186:270-274.
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2010.
Elevated CO2 and aboveground-belowground herbivory by the clover root weevil. Oecologia. 162:209-216.
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2010.
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An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One. 5:-e8598.
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2010.
Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images. Machine Vision and Applications. 21:921-939.
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2010.
Estimation of maize canopy properties from remote sensing by inversion of 1-D and 4-D models. Precision Agriculture. 11:319-334.
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2010.
Evaluating energy intake measurement in free-living subjects: when to record and for how long? Public Health Nutrition. 13:172-180.
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2010.
Evolution of relative reading frame bias in unidirectional prokaryotic gene overlaps. Molecular Biology and Evolution. 27:753-756.
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2010.
Evolution of tree nutrition. Tree Physiology. 30:1050-1071.
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2010.
Ex vivo magnetic resonance imaging of crystalline lens dimensions in chicken. Molecular Vision. 16:144-153.
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2010.
Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38:683-688.
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2010.
Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.
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2010.
F-actin dynamics in Neurospora crassa. Eukaryotic Cell. 9:547-557.
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2010.
Flapjack - graphical genotype visualization. Bioinformatics. 26:3133-3134.
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2010.
Flavonoid profiling and transcriptome analysis reveals new gene-metabolite correlations in tubers of Solanum tuberosum L. Journal of Experimental Botany. 61:1225-1238.
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2010.
Food security: focus on agriculture. Science. 328:172-173.
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2010.
Functional markers for red raspberry. Journal of the American Society for Horticultural Science. 135:418-427.
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2010.
Generation and characterisation of a scFv against recombinant coat protein of the geminivirus Tomato leaf curl New Delhi virus. Archives of Virology. 155:335-342.
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2010.
Genetic analysis of potassium use efficiency in Brassica oleracea. Annals of Botany. 105:1199-1210.
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2010.
Genetic and environmental effects influencing fruit colour and QTL analysis in raspberry. Theoretical and Applied Genetics. 121:611-627.
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2010.
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2010.
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
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2010.
Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
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2010.
Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.
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2010.
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2010.
Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health. 10:-423.
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2010.
Geomicrobiology of eukaryotic microorganisms. Geomicrobiology Journal. 27:491-519.
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2010.
Grasses. Current Biology. 20:R837-R839.
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2010.
HIGS: Host-induced gene silencing in the obligate biotrophic fungal pathogen Blumeria graminis. Plant Cell. 22:3130-3141.
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2010.
Human provenancing based on stable isotope forensic intellgence. Science & Justice. 50:35-36.
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2010.
The hydrological response of heavy clay grassland soils to rainfall in south-west England using . Rapid Communications in Mass Spectrometry. 24:475-482.
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2010.
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2010.
The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.
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2010.
Impact of sulphur fertilisation on crop response to selenium fertilisation. Plant and Soil. 332:31-40.
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2010.
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2010.
Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.
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2010.
Inorganic carbon acquisition by eukaryotic algae: four current questions. Photosynthesis Research. 106:123-134.
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2010.
Insect endosymbionts: manipulators of insect herbivore trophic interactions? Protoplasma. 244:25-51.
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The internal domain of hordeivirus movement protein TGB1 forms in vitro filamentous structures.. Biochemistry (Moscow). 75:752-758.
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2010.
Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
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2010.
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2010.
Investigating the inhibitory activity of green coffee and cacao bean extract on pancreatic lipase. Nutrition Bulletin. 35:207-212.
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2010.
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.. Nucleic Acids Research. 38:265-278.
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2010.
Involvement of the plant nucleolus in virus and viroid infections: Parallels with animal pathosystems. Advances in Virus Research. 77:119-158.
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2010.
Is the growth rate hypothesis applicable to microalgae? Journal of Phycology. 46:1-12.
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2010.
Is vegetation composition or soil chemistry the best predictor of the soil microbe community? Plant and Soil. 333:417-430.
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2010.
Kelp (Laminaria digitata) increases germination and affects rooting and plant vigour in crops and native plants from an arable grassland in the Outer Hebrides, Scotland. Journal of Coastal Conservation. 14:239-247.
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2010.
Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time. Trends in Ecology and Evolution. 25:574-582.
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2010.
Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.
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2010.
Managing the ecology of foliar pathogens: ecological tolerance in crops (Review). Annals of Applied Biology. 157:343-359.
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2010.
Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.
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2010.
Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
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2010.
Measurement at the field scale of soil . Rapid Communications in Mass Spectrometry. 24:511-518.
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2010.
The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.
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2010.
Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.
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2010.
Metabolomic analysis of the potato tuber life cycle. Metabolomics. 6:274-291.
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2010.
A metabolomic approach to study major metabolite changes during acclimation to limiting CO2 in Chlamydomonas reinhardtii. Plant Physiology. 154:187-196.
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2010.
A metabolomics study of cultivated potato (Solanum tuberosum) groups, Andigena, Phureja, Stenotomum and Tuberosum using gas chromatography-mass spectrometry. Journal of Agricultural and Food Chemistry. 58:1214-1223.
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2010.
A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
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2010.
Micro-evolutionary change in relation to insecticide resistance in the peach-potato aphid, Myzus persicae. Ecological Entomology. 35:131-146.
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2010.
Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.
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2010.