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2006

Raven JA, Beardall J. 2006. Chorophyll fluorescence and ecophysiology: seeing red? New Phytologist. 169:449-451. Abstract

Kikuchi T, Shibuya H, Aikawa T, Jones JT. 2006. Cloning and characterization of pectate lyases expressed in the esophageal gland of the pine wood nematode Bursaphelenchus xylophilus. Molecular Plant-Microbe Interactions. 19:280-287. Abstract

Meharg AA, Scrimgeour CM, Hossain SA, Fuller K, Cruickshank K, Williams PN, Kinniburgh DG. 2006. Codeposition of organic carbon and arsenic in Bengal Delta aquifers. Environmental Science & Technology. 40:4928-4935. Abstract

Toth IK, Pritchard L, Birch PRJ. 2006. Comparative genomics reveals what makes an enterobacterial plant pathogen. Annual Review of Phytopathology. 44:305-336. Abstract

Heckmann L, Griffiths BS, Caul S, Thompson J, Pusztai-Carey M, Moar, W.J, Andersen MN, Krogh PH. 2006. Consequences for Protaphorura armata (Collembola: Onychiuridae) following exposure to genetically modified Bacillus thuringiensis (Bt) maize and non-Bt maize. Environmental Pollution. 142:212-216. Abstract

Luo ZW, Zhang Z, Leach L, Zhang RM, Bradshaw JE, Kearsey MJ. 2006. Constructing genetic linkage maps under a tetrasomic model. Genetics. 172:2635-2645. Abstract

van Os H, Andrzejewski S, Bakker E, Barrena I, Bryan GJ, Caromel B, Ghareeb B, Isidore E, De Jong W, van Koert P et al.. 2006. Construction of a 10,000 marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and genomewide physical map. Genetics. 173:1075-1087. Abstract

Hopkins DW, Sparrow AD, Novis P, Gregorich EG, Elberling B, Greenfield LG. 2006. Controls on the distribution of productivity and organic resources in Antarctic dry valley soils (Review). Proceedings of the Royal Society B. 273:2687-2695. Abstract

Winfield M, D'Amato GF, De Dominicis RI, Salimbeni P, Tucci GF. 2006. A cytological and molecular study of the genera Scorzonera L. and Podospermum (L.) DC (Asteraceae). Caryologia. 59:153-163. Abstract

Cortet J, Andersen MN, Caul S, Griffiths BS, Joffre R, Lacroix B, Sausse C, Thompson J, Krogh PH. 2006. Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract

George TS, Turner BL, Gregory PJ, Cade-Menun BJ, Richardson AE. 2006. Depletion of organic phosphorus from Oxisols in relation to phosphatase activities in the rhizosphere. European Journal of Soil Science. 57:47-57. Abstract

Syed NH, Sorensen AP, Antonise R, van de Wiel C, van der Linden CG, van't Westende W, Hooftman DAP, den Nijs HCM, Flavell AJ. 2006. A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers. Theoretical and Applied Genetics. 112:517-527. Abstract

Schena L, Hughes KJD, Cooke DEL. 2006. Detection and quantification of Phytophthora ramorum, P. kernoviae, P. citricola and P. quercina in symptomatic leaves by multiplex real-time PCR. Molecular Plant Pathology. 7:365-379. Abstract

Bradshaw JE, Hackett CA, Lowe R, McLean K, Stewart HE, Tierney I, Vilaro MDR, Bryan GJ. 2006. Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tubersoum subsp. tuberosum). Theoretical and Applied Genetics. 113:943-951. Abstract

Riga E, Larsen R, Neilson R, Guerra N. 2006. Development of rapid diagnostic tools to identify viruliferous and non-viruliferous stubby root nematodes in the Pacific Northwest. Phytopathology. 96:S171-S171.

Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui A, Zhan J, McDonald BA. 2006. Differential selection on Rhynchosporium secalis during parasitic and saprophytic phases in the barley scald disease cycle. Phytopathology. 96:1214-1222. Abstract

Liu J. 2006. Dissipation and maintenance of stable states in an enzymatic system: analysis and simulation. Biophysical Chemistry. 120:207-214. Abstract

Button DK, Gartland KMA, Ball LD, Natanson L, Gartland JS, Lyon GD. 2006. DRASTIC-INSIGHTS: Querying information in a plant gene expression database. Nucleic Acids Research. 34:D712-D716. Abstract

Simons V, Morrissey JP, Latijnhouwers M, Csukai M, Cleaver A, Yarrow C, Osborn A. 2006. Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrobial Agents and Chemotherapy. 50:2732-2740.

de Felipe P, Luke GA, Hughes LE, Gani D, Halpin C, Ryan MD. 2006. E unum pluribus: multiple proteins from a self-processing polyprotein. Trends in Biotechnology. 24:68-75. Abstract

Krivtsov V, Bezginova T, Salmond R, Liddell K, Garside A, Thompson J, Palfreyman JW, Staines HJ, Brendler A, Griffiths BS et al.. 2006. Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland. Forestry. 79:201-216. Abstract

Krivtsov V, Garside A, Bezginova T, Thompson J, Palfreyman JW, Salmond R, Liddell K, Brendler A, Griffiths BS, Watling R et al.. 2006. Ecological study of the forest litter meiofauna of a unique Scottish woodland. Animal Biology. 56:69-93. Abstract

Chloupek O, Forster BP, Thomas WTB. 2006. The effect of semi-dwarf genes on root system size in field-grown barley. Theoretical and Applied Genetics. 112:779-786. Abstract

Boag B, Neilson R, Scrimgeour CM. 2006. The effect of starvation on the planarian Arthurdendyus triangulatus (Tricladida: Terricola) as measured by stable isotopes. Biology and Fertility of Soils. 43:267-270. Abstract

Johnson SN, Zhang X, Crawford J, Gregory PJ, Hix N, Jarvis S, Murray PJ, Young IM. 2006. Effects of CO2 on the searching behaviour of the root-feeding clover weevil Sitona lepidus (Coleoptera: Curculionidae). Bulletin of Entomological Research. 96:361-366. Abstract

Murillo-Amador B, Jones HG, Kaya C, Aguilar RL, Garcia-Hernandez JL, Troyo-Di E, Avila-Serrano NY, Rueda-Puente E. 2006. Effects of foliar application of calcium nitrate on growth and physiological attributes of cowpea (Vigna unguiculata L.Walp.) grown under salt stress. Environmental and Experimental Botany. 58:188-196.

Firbank LG, Rothery P, May MJ, Clark SJ, Scott RJ, R.C. S, Boffey CWH, Brooks DR, Champion GT, Haughton AJ et al.. 2006. Effects of genetically modified herbicide-tolerant cropping systems on weed seedbanks in two years of following crops. Biology Letters. 2:140-143. Abstract

Shepherd T, Griffiths DW. 2006. The effects of stress on plant epicuticular waxes. New Phytologist. 171:469-499. Abstract

Heard MS, Clark SJ, Rothery P, Perry JN, Bohan DA, Brooks DR, Champion GT, Dewar AM, Hawes C, Haughton AJ et al.. 2006. Effects of successive seasons of genetically modified herbicide-tolerant maize cropping on weeds and invertebrates. Annals of Applied Biology. 149:249-254. Abstract

Morris WL, Ducreux LJM, Fraser PD, Millam S, Taylor MA. 2006. Engineering ketocarotenoid biosynthesis in potato tubers. Metabolic Engineering. 8:253-263. Abstract

Venkatesh B, Babujee L, Liu H, Hedley PE, Fujikawa T, Birch PRJ, Toth IK, Tsuyumu S. 2006. Erwinia chrysanthemi 3937 PhoQ sensor kinase regulates several virulence determinants. Journal of Bacteriology. 188:3088-3098. Abstract

Leinonen I, Grant OM, Tagliavia CPP, Chaves MM, Jones HG. 2006. Estimating stomatal conductance with thermal imagery. Plant Cell and Environment. 29:1508-1518.

Nuopponen M, Birch GM, Sykes R, Lee S, Stewart D. 2006. Estimation of wood density and chemical composition by means of Diffuse Reflectance Mid-Infrared Fourier Transform (DRIFT-MIR) spectroscopy. Journal of Agricultural and Food Chemistry. 54:34-40. Abstract

Iannetta PPM, Laarhoven L-J, Medina-Escobar N, James EK, McManus MT, Davies HV, Harren FJM. 2006. Ethylene and carbon dioxide production by developing strawberries show a correlative pattern that is indicative of ripening climacteric fruit. Physiologia Plantarum. 127:247-259. Abstract

Caldwell KS, Russell JR, Langridge P, Powell W. 2006. Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics. 172:557-567. Abstract

Yeates GW, Boag B. 2006. Female size shows similar trends in all clades of the phylum Nematoda. Nematology. 8:111-127. Abstract

Karanastasi E, Neilson R, Decraemer W. 2006. First record of two trichodorid nematode species Paratrichodorus minor and Trichodorus sparsus (Nematoda: Trichodoridae Thorne 1935) from Greece. Annals of the Benaki Phytopathological Institute. 20:129-133.

Cacciola SO, Pane A, Cooke DEL, Raudino F, Magnano di San Lio G. 2006. First report of brown rot and wilt of fennel caused by Phytophthora megasperma in Italy. Plant Disease. 90:-110. Abstract

Sommerhalder RJ, McDonald BA, Zhan J. 2006. The frequencies and spatial distribution of mating types in Stagonospora nodorum are consistent with recurring sexual reproduction. Phytopathology. 96:234-239. Abstract

Kuan HL, Fenwick C, Glover LA, Griffiths BS, Ritz K. 2006. Functional resilience of microbial communities from perturbed upland grassland soils to further persistent or transient stresses. Soil Biology & Biochemistry. 38:2300-2306. Abstract

Bradshaw JE, Bryan GJ, Ramsay G. 2006. Genetic resources (including wild and cultivated Solanum species) and progress in their utilisation in potato breeding. Potato Research. 49:49-65. Abstract

Pritchard L, White JA, Birch PRJ, Toth IK. 2006. GenomeDiagram: A python package for the visualisation of large-scale genomic data. Bioinformatics. 22:616-617. Abstract

Blok VC, Chapman S, Armstrong MR, Phillips M, Lilley C, Urwin P, Blanchard A, Grenier E, Jones JT. 2006. Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.

Ford KE, Gregory PJ, Gooding MJ, Pepler S. 2006. Genotype and fungicide effects on late-season root growth of winter wheat.. Plant and Soil. 284:33-44. Abstract

Waugh R, Leader DJ, McCallum N, Caldwell D. 2006. Harvesting the potential of induced biological diversity. Trends in Plant Science. 11:71-79. Abstract

Muehlbauer GJ, Bhau BS, Syed NH, Heinen S, Cho S, Marshall DF, Pateyron S, Buisine N, Chalhoub B, Flavell AJ. 2006. A hAT superfamily tranposase recruited by the cereal grass genome. Molecular Genetics and Genomics. 275:553-563. Abstract

Nuopponen M, Shepherd T, Birch GM, Verrall SR, Stewart D. 2006. Hemicelluloses and pectins in 25 tropical hardwoods. Cellulose Chemistry and Technology. 40:735-738. Abstract

Walker PG, Gordon SL, Brennan RM, Hancock RD. 2006. High-throughput monolithic HPLC method for rapid vitamin C phenotyping of berry fruit. Phytochemical Analysis. 17:284-290. Abstract

Montechiaro F, Hirschmugl CJ, Raven JA, Giordano M. 2006. Homeostasis of cell composition during prolonged darkness. Plant Cell and Environment. 29:2198-2204. Abstract

Hermans C, Hammond JP, White PJ, Verbruggen N. 2006. How do plants respond to nutrient shortage by biomass allocation? Trends in Plant Science. 11:610-617. Abstract

Hallett PD, White NA, Ritz K. 2006. Impact of basidiomycete fungi on the wettability of soil contaminated with a hydrophobic polycyclic aromatic hydrocarbon. Biologia. 61:334-338. Abstract

Feeney D, Hallett PD, Rodger S, Bengough AG, White NA, Young IM. 2006. Impact of fungal and bacterial biocides on microbial induced water repellency in arable soil. Geoderma. 135:72-80. Abstract

Chepstow-Lusty A, Winfield M, Wallis J, Collins A. 2006. The importance of local tree resources around Gombe National Park, Western Tanzania: implications for humans and chimpanzees. Ambio. 35:124-129. Abstract

Hopkins DW, Webster EA, Tilston EL, Halpin C. 2006. Influence of available substrates on the decomposition in soil of plant materials with genetic modifications to lignin biosynthesis. European Journal of Soil Science. 57:495-503. Abstract

Raven JA, Cockell CS. 2006. Influence on photosynthesis of starlight, moonlight, planetlight and light pollution (reflections on photosynthetically active radiation in the universe).. Astrobiology. 6:668-675. Abstract

Kevekordes K, Holland D, H N, Jenkins S, Kos R, Roberts S, Raven JA, Scrimgeour CM, Shelly K, Stojkovic S et al.. 2006. Inorganic carbon acquisition by eight species of Caulerpa (Caulerpaceae, Chlorophyta). Phycologia. 45:442-449. Abstract

Archer NAL, Jones HG. 2006. Integrating hyperspectral imagery at different scales to estimate component surface temperatures. International Journal of Remote Sensing. 27:2141-2159. Abstract

Dekker LW, Hallett PD, Lichner L, Novak V, Sir M. 2006. Introduction to biohydrology. BiologiaBiohydrology, Special Issue, Biologia 61/Supplement 19. 61, Suppl 19:223-224. Abstract

Nunan N, Ritz K, Rivers M, Feeney D, Young IM. 2006. Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract

Castelli L, Bryan GJ, Blok VC, Ramsay G, Sobczak M, Gillespie T, Phillips MS. 2006. Investigations of Globodera pallida invasion and syncytia formation within roots of the susceptible potato cultivar D. Nematology. 8:103-110. Abstract

Finkel ZV, Quigg A, Raven JA, Reinfelder JR, Schofield OE, Falkowski PG. 2006. Irradiance and the elemental stoichiometry of marine phytoplankton. Limnology and Oceanography. 51:2690-2701. Abstract

Quigg A, Kevekordes K, Raven JA, Beardall J. 2006. Limitations on microalgal growth at very low photon fluence rates: the role of energy slippage. Photosynthesis Research. 88:299-310. Abstract

Kilminster KL, Walker DI, Thompson PA, Raven JA. 2006. Limited nutritional benefit to the seagrass Halophila ovalis, in culture, following sediment organic matter enrichment. Estuarine Coastal and Shelf Science. 68:675-685. Abstract

Graham J, Smith K, Tierney I, MacKenzie K, Hackett CA. 2006. Mapping gene H controlling cane pubescence in raspberry and its association with resistance to cane botyritis and spur blight, rust and cane spot. Theoretical and Applied Genetics. 112:818-831. Abstract

Bradshaw JE, Bryan GJ, Lees AK, McLean K, Solomon-Blackburn RM. 2006. Mapping the R10 and R11 genes for resistance to late blight (Phytophthora infestans) present in the potato (Solanum tuberosum) R-gene differentials of Black. Theoretical and Applied Genetics. 112:744-751. Abstract

H C, English LC, Halpin C, Andreux F, Hopkins DW. 2006. Microbial community structure in soils with decomposing residues from plants with genetic modifications to lignin biosynthesis. FEMS Microbiology Letters. 263:68-75. Abstract

Malloch G, Highet F, Kasprowicz L, Pickup J, Neilson R, Fenton B. 2006. Microsatellite marker analysis of peach-potato aphids (Myzus persicae, Homoptera: Aphididae) from Scottish suction traps. Bulletin of Entomological Research. 96:573-582. Abstract

Zhang X, Johnson SN, Gregory PJ, Crawford JW, Young IM, Murray PJ, Jasinka E. 2006. Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract

Begg GS, Hockaday S, McNicol JW, Askew M, Squire GR. 2006. Modelling the persistence of volunteer oilseed rape (Brassica napus). Ecological Modelling. 198:195-207. Abstract

Griffiths BS, Donn S, Neilson R, Daniell TJ. 2006. Molecular sequencing and morphological analysis of a nematode community. Applied Soil Ecology. 32:325-337. Abstract

Long DG, Paton JA, Squirrell J, Woodhead M, Hollingsworth PM. 2006. Morphological, ecological and genetic evidence for distinguishing Anastrophyllum joergensenii Schiffn. and A. alpinum Steph. (Jungermanniopsida: Lophoziaceae). Journal of Bryology. 28:108-117. Abstract

Tuomainen MH, Nunan N, Lehesranta SJ, Tervahauta AI, Hassinen VH, Schat H, Koistinen KM, Auriola S, McNicol JW, Karenlampi SO. 2006. Multivariate analysis of protein profiles of metal hyperaccumulator Thlaspi caerulescens accessions. Proteomics. 6:3696-3706. Abstract

Williamson VM, Kumar A. 2006. Nematode resistance in plants: the battle underground. Trends in Genetics. 22:396-403. Abstract

Glidewell SM. 2006. NMR imaging of developing barley grains. Journal of Cereal Science. 43:70-78. Abstract

Lees AK, Wattier R, Shaw DS, Sullivan L, Williams NA, Cooke DEL. 2006. Novel microsatellite markers for the analysis of Phytophthora infestans populations. Plant Pathology. 55:311-319. Abstract

Grant OM, Chaves MM, Jones HG. 2006. Optimising thermal imaging as a technique for detecting stomatal closure induced by drought stress under greenhouse conditions. Physiologia Plantarum. 127:507-518. Abstract

Torrance L, Ziegler A, Pittman H, Paterson M, Toth R, Eggleston I. 2006. Oriented immobilisation of engineered single-chain antibodies to develop biosensors for virus detection. Journal of Virological Methods. 134:164-170. Abstract

Morris WL, Ducreux LJM, Hedden P, Millam S, Taylor MA. 2006. Overexpression of a bacterial 1-deoxy-D-xylulose 5-phosphate synthase gene in potato tubers perturbs the isoprenoid metabolic network: implications for the control of the tuber life-cycle. Journal of Experimental Botany. 57:3007-3018. Abstract

Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui AH, Zhan J, McDonald BA. 2006. Pathogen evolution in response to host resistance genes: Evidence from field experiments with Rhynchosporium secalis on barley. Phytopathology. 96:S2-S2.

Collazo C, Ramos PL, Chacon O, Borroto CJ, Lopez Y, Pujol M, Thomma BPHJ, Hein I, Borras-Hidalgo O. 2006. Phenotypical and molecular characterization of Tomato mottle Taino virus - Nicotiana megalosiphon interaction. Physiological and Molecular Plant Pathology. 67:231-236. Abstract

Dick MA, Dobbie K, Cooke DEL, Brasier CM. 2006. Phytophthora captiosa sp. nov and Phytophthora fallax sp. nov causing crown dieback of Eucalyptus in New Zealand. Mycological Research. 110:393-404. Abstract

Donahoo R, Blomquist CL, Thomas SL, Moulton JK, Cooke DEL, Lamour KH. 2006. Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycological Research. 110:1309-1322. Abstract

Ravensdale M, Toth IK, Birch PRJ. 2006. Phytotoxins and suppression of resistance: New mechanisms of disease induction in the plant pathogen Erwinia carotovora subsp. atroseptica. Phytopathology. 96:S96-S96.

McCue KF, Allen PV, Shepherd LVT, Blake A, Whitworth JL, Maccree MM, Rockhold DR, Stewart D, Davies HV, Belknap WR. 2006. The primary in vivo steroidal alkaloid glucosyltransferase from potato. Phytochemistry. 67:1590-1597. Abstract

Cooke DEL. 2006. The pros and cons of ITS-based phylogenetic analysis for the genus Phytophthora: current status and future vision. Phytopathology. 96:S134-S134.

Lehesranta SJ, Davies HV, Shepherd LVT, Koistinen KM, Massat N, Nunan N, McNicol JW, K SO. 2006. Proteomic analysis of the potato tuber life cycle. Proteomics. 6:6042-6052. Abstract

Jones AT, McGavin WJ, Gepp V, Zimmerman MT, Scott SW. 2006. Purification and properties of blackberry chlorotic ringspot, a new virus species in subgroup 1 of the genus Ilarvirus found naturally infecting blackberry in the UK. Annals of Applied Biology. 149:125-135. Abstract

Martens HJ, Roberts AG, Oparka KJ, Schulz A. 2006. Quantification of plasmodesmatal endoplasmic reticulum coupling between sieve elements and companion cells using fluorescence redistribution after photobleaching. Plant Physiology. 142:471-480. Abstract

MacMillan K, Blok VC, Young I, Crawford J, Wilson MJ. 2006. Quantification of the slug parasitic nematode Phasamarhabditis hermaphrodita from soil samples using real time qPCR. International Journal for Parasitology. 36:1453-1461. Abstract

Holeva R, Phillips MS, Neilson R, Brown DJF, Young V, Boutsika K, Blok VC. 2006. Real-time PCR detection and quantification of vector trichodorid nematodes and Tobacco rattle virus. Molecular and Cellular Probes. 20:203-211. Abstract

Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat PR, Roose ML, Svensson JT, Stein N, Varshney RK, Marshall DF et al.. 2006. Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, USA. 103:18656-18661. Abstract

Lazarova SS, Malloch G, Oliveira CMG, Hubschen J, Neilson R. 2006. Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations. Journal of Nematology. 38:404-410. Abstract

Andrews M, Raven JA, Lea PJ, Sprent JI. 2006. A role for shoot protein in shoot-root dry matter allocation in higher plants. Annals of Botany. 97:3-10. Abstract

Bengough AG, Bransby MF, Hans J, McKenna SJ, Roberts TJ, Valentine TA. 2006. Root responses to soil physical conditions; growth dynamics from field to cell. Journal of Experimental Botany. 57:437-447. Abstract

Gregory PJ. 2006. Roots, rhizosphere and soil: the route to a better understanding of soil science? European Journal of Soil Science. 57:2-12. Abstract

Zhan J, Stefanato FL, McDonald BA. 2006. Selection for increased cyproconazole tolerance in Mycosphaerella graminicola through local adaptation and in response to host resistance. Molecular Plant Pathology. 7:259-268. Abstract

Raven JA. 2006. Sensing inorganic carbon: C02 and HCO3. Biochemical Journal. 396:e5-e7.

Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser JI, Wheatley RE, McNicol JW, Millard P. 2006. Sheep-urine-induced changes in soil microbial community structure. FEMS Microbiology Ecology. 56:310-320. Abstract

Hassall M, Adl S, Berg M, Griffiths BS, Scheu S. 2006. Soil fauna-microbe interactions: towards a conceptual framework for research. European Journal of Soil Biology. 42:S54-S60. Abstract

Griffiths BS, Caul S, Thompson J, Birch ANE, Scrimgeour CM, Cortet J, Foggo A, Hackett CA, Krogh PH. 2006. Soil microbial and faunal community responses to Bt maize and insecticide in two soils. Journal of Environmental Quality. 35:734-741. Abstract

Wall DH, Adams BJ, Barrett JE, Hopkins DW, Virginia RA. 2006. A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica. Soil Biology & Biochemistry. 38:3001-3002. Abstract

Niehl A, Lacomme C, Erban A, Kopka J, Kr U, Fisahn J. 2006. Systemic Potato virus X infection induces defence gene expression and accumulation of . Functional Plant Biology. 33:593-604. Abstract

Oliveira CMG, Neilson R. 2006. Taxonomy of Longidorid nematodes and dichotomous keys for the identification of Xiphinema and Xiphidorus species recorded in Brazil. Arquivos Instituto Biologico. 73:131-141.

Feeney D, Crawford JW, Daniell TJ, Hallett PD, Nunan N, Ritz K, Rivers M, Young IM. 2006. Three-dimensional microorganisation of the soil-root-microbe system. Microbial Ecology. 52:151-158. Abstract

Gregorich EG, Rochette P, Hopkins DW, McKim UF, St-Georges P. 2006. Tillage-induced environmental conditions in soil and substrate limitation determine biogenic gas production. Soil Biology & Biochemistry. 38:2614-2628. Abstract

Edwards D, Li CS, Raven JA. 2006. Tracheids in an early vascular plant: a tale of two branches. Botanical Journal of the Linnean Society. 150:115-130. Abstract

Birch PRJ, Rehmany AP, Pritchard L, Kamoun S, Beynon JL. 2006. Trafficking arms: oomycete effectors enter host plant cells. Trends in Microbiology. 14:8-11. Abstract

Richter A, Jacobsen H-J, de Kathen A, de Lorenzo G, Briviba K, Hain R, Ramsay G, Kiesecker H. 2006. Transgenic peas (Pisum sativum) expressing polygalacturonase inhibiting protein from raspberry (Rubus idaeus) and stilbene synthase from grape (Vitis vinifera). Plant Cell Reports. 25:1166-1173. Abstract

Canto T, Uhrig JF, Swanson MM, Wright KM, MacFarlane SA. 2006. Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract

Torrance L, Andreev I, Gabrenaite-Verhouskay R, Cowan GH, Makinen K, Taliansky ME. 2006. An unusual structure at one end of potato potyvirus particles. Journal of Molecular Biology. 357:1-8.

Dunbabin V, McDermott S, Bengough AG. 2006. Upscaling from rhizosphere to whole root system: modelling the effects of phospholipid surfactants on water and nutrient uptake. Plant and Soil. 283:57-72. Abstract

Augustin NH, McNicol JW, Marriott CA. 2006. Using the truncated auto-Poisson model for spatially correlated counts of vegetation. Journal of Agricultural Biological and Environmental Statistics. 11:1-23. Abstract

Swanston JS, Newton AC, Hoad SP, Spoor W. 2006. Variation across environments in patterns of water uptake and endosperm modification in barley varieties and variety mixtures. Journal of the Science of Food and Agriculture. 86:826-833. Abstract

Cacciola SO, Spica D, Cooke DEL, Raudino F, San Lio GMD. 2006. Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract

Oliveira CMG, Ferraz LCCB, Neilson R. 2006. Xiphinema krugi, species complex or complex of cryptic species? Journal of Nematology. 38:418-428. Abstract

Holeva RC, MacFarlane SA. 2006. Yeast two-hybrid study of tobacco rattle virus coat protein and 2b protein interactions. Archives of Virology. 151:2123-2132. Abstract

2005

Pendle AF, Clark GP, Boon R, Lewandowska D, Lam YW, Andersen J, Mann M, Lamond AI, Brown JWS, Shaw PJ. 2005. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Molecular Biology of the Cell. 16:260-269.

Norra S, Handley LL, Berner Z, St D. 2005. 13C and 15N natural abundances of urban soils and herbaceous vegetation in Karlsruhe, Germany. European Journal of Soil Science. 56:607-620. Abstract

Hirth JR, McKenzie BM, Tisdall JM. 2005. Ability of seedling roots of Lolium perenne L. to penetrate soil from artificial biopores is modified by soil bulk density, biopore angle and biopore relief. Plant and Soil. 272:327-336. Abstract

Blok VC. 2005. Achievements in and future prospects for molecular diagnostics for plant-parasitic nematodes. Canadian Journal of Plant Pathology. 27:176-185. Abstract

Fargette M, Lollier V, Phillips M, Blok VC, Frutos R. 2005. AFLP analysis of the genetic diversity of Meloidogyne chitwoodi and M. fallax, major agricultural pests. Comptes Rendus Biologies. 328:455-462. Abstract

Ducreux LJM, Morris WL, Taylor MA, Millam S. 2005. Agrobacterium-mediated transformation of Solanum phureja. Plant Cell Reports. 24:10-14. Abstract

Raven JA, Ball LA, Beardall J, Giordano M, Maberly SC. 2005. Algae lacking carbon concentrating mechanisms. Canadian Journal of Botany. 83:879-890.

Henderson IR, Liu F, Drea SO, Simpson GG, Dean C. 2005. An allelic series reveals essential roles for FY in plant development in addition to flowering-time control. Development. 132:3597-3607. Abstract

Bahar B, Monahan FJ, Moloney AP, O'Kiely P, Scrimgeour CM, Schmidt O. 2005. Alteration of the carbon and nitrogen stable isotope composition of beef by substitution of grass silage with maize silage. Rapid Communications in Mass Spectrometry. 19:1937-1942. Abstract

Masoudi-Nejad A, Nasuda S, Bihoreau M-T, Waugh R, Endo TR. 2005. An alternative to radiation hybrid mapping for large-scale genome analysis in barley. Molecular Genetics and Genomics. 274:589-594. Abstract

Fanelli E, Di Vito M, Jones JT, De Giorgi C. 2005. Analysis of chitin synthase function in a plant parasitic nematode, Meloidogyne artiellia, using RNAi. Gene. 349:87-95. Abstract

Furlanetto C, Cardle L, Brown DJF, Jones JT. 2005. Analysis of Expressed Sequence Tags from the ectoparasitic nematode Xiphinema index. Nematology. 7:95-104. Abstract

Koscianska E, Kalantidis K, Wypijewski K, Sadowski J, Tabler M. 2005. Analysis of RNA silencing in agroinfiltrated leaves of Nicotiana benthamiana and Nicotiana tabacum. Plant Molecular Biology. 59:647-661. Abstract

Scotti I, Burelli A, Cattonaro F, Chagne D, Fuller J, Hedley PE, Jansson G, Lalanne C, Madur D, Neale D et al.. 2005. Analysis of the distribution of marker classes in a genetic linkage map: A case study in Norway Spruce (Picea.abies Karst). Tree Genetics and Genomes. 1:93-102. Abstract

Armstrong MR, Whisson SC, Pritchard L, Bos JIB, Venter E, Avrova AO, Rehmany AP, B U, Brooks K, Cherevach I et al.. 2005. An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognised in the host cytoplasm. Proceedings of the National Academy of Sciences, USA. 102:7766-7771. Abstract

Harrison BD, Robinson DJ. 2005. Another quarter century of great progress in understanding the biological properties of plant viruses. Annals of Applied Biology. 146:15-37. Abstract

McDougall GJ, Gordon SL, Brennan RM, Stewart D. 2005. Anthocyanin-flavanol condensation products from blackcurrant (Ribes nigrum L.). Journal of Agricultural and Food Chemistry. 53:7878-7885. Abstract

McDougall GJ, Fyffe S, Dobson P, Stewart D. 2005. Anthocyanins from red wine - their stability under simulated gastrointestinal digestion. Phytochemistry. 66:2540-2548. Abstract

Latijnhouwers M, Hawes C, Carvalho C, Oparka K, Gillingham AK, Boevink P. 2005. An Arabidopsis GRIP domain protein locates to the trans-Golgi and binds the small GTPase ARL1. Plant Journal. 44:459-470. Abstract

Brown JWS, Shaw PJ, Shaw P, Marshall DF. 2005. Arabidopsis nucleolar protein database (AtNoPDB). Nucleic Acids Research. 33:D633-D636.

McDougall GJ, Dobson P, Smith P, Blake A, Stewart D. 2005. Assessing potential bioavailability of raspberry anthocyanins using an in vitro digestion system. Journal of Agricultural and Food Chemistry. 53:5896-5904. Abstract

Fenton B, Malloch G, Woodford JAT, Foster SP, Anstead J, Denholm I, King L, Pickup J. 2005. The attack of the clones: tracking the movement of insecticide-resistant peach-potato aphids Myzus persicae (Hemiptera: Aphididae). Bulletin of Entomological Research. 95:483-494. Abstract

Johnson SN, Gregory PJ, Greenham JR, Zhang X, Murray PJ. 2005. Attractive properties of an isoflavonoid found in white clover root nodules on the clover root weevil. Journal of Chemical Ecology. 31:2223-2229. Abstract

Swanston JS, Newton AC, Hoad SP, Spoor W. 2005. Barleys grown as cultivar mixtures compared with blends made before and after malting, for effects on malting performance. Journal of the Institute of Brewing. 111:144-152. Abstract

Hameed S, Robinson DJ. 2005. Begomoviruses from mungbeans in Pakistan: epitope profiles, DNA A sequences and phylogenetic relationships. Archives of Virology. 149:809-819. Abstract

Griffiths BS, Hallett PD, Kuan HL, Pitkin Y, Aitken MN. 2005. Biological and physical resilience of soil amended with heavy metal-contaminated sewage sludge. European Journal of Soil Science. 56:197-206. Abstract

Hetherington AM, Raven JA. 2005. The biology of carbon dioxide. Current Biology. 15:406-410.

Hancock RD, Viola R. 2005. Biosynthesis and catabolism of L-ascorbic acid in plants. Critical Reviews in Plant Sciences. 24:167-188. Abstract

Kumar PL, Latha TKS, Kulkarni NK, Raghavendra N, Saxena KB, Waliyar F, Rangaswamy KT, Muniyappa V, Doriswamy S, Jones AT. 2005. Broad-based resistance to pigeonpea sterility mosaic disease in wild relatives of pigeonpea (Cajanus: Phaseoleae). Annals of Applied Biology. 146:371-379. Abstract

Aflakpui GKS, Gregory PJ, Froud-Williams RJ. 2005. Carbon (13C) and nitrogen (15N) translocation in a maize-Striga hermonthica association. Experimental Agriculture. 41:321-333. Abstract

Taylor MA, Ramsay G. 2005. Carotenoid biosynthesis in plant storage organs: recent advances and prospects for improving plant food quality (Review). Physiologia Plantarum. 124:143-151. Abstract

Raven JA. 2005. Cellular location of starch synthesis and evolutionary origin of starch genes. Journal of Phycology. 41:1070-1072. Abstract

Liu H, Hedley PE, Cardle L, Wright KM, Hein I, Marshall DF, Waugh R. 2005. Characterisation and functional analysis of two barley caleosins expressed during barley caryopsis development. Planta. 221:513-522. Abstract

Sobczak M, Avrova AO, Jupowicz J, Phillips MS, Ernst K, Kumar A. 2005. Characterisation of susceptibility and resistance responses to potato cyst nematode (Globodera spp.) infection of tomato lines in the absence and presence of the broad-spectrum nematode resistance Hero gene. Molecular Plant-Microbe Interactions. 18:158-168.

Grover SPP, McKenzie BM, Baldock JA, Papst WA. 2005. Chemical characterisation of bog peat and dried peat of the Australian Alps. Australian Journal of Soil Research. 43:963-971. Abstract

Thomson NR, Yeats C, Bell K, Holden MTG, Bentley SD, Livingstone M, Cerde AM, Harris B, Doggett J, Ormond D et al.. 2005. The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to inter-species variation.. Genome Research. 15:629-640. Abstract

Molina-Cano J-L, Russell JR, Moralejo MA, Escacena JL, Arias G, Powell W. 2005. Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics. 110:613-619.

Gregory PJ, Ingram JSI, Brklacich M. 2005. Climate change and food security. Philosophical Transactions of the Royal Society of London - Series B. 360:2139-2148. Abstract

Giordano M, Beardall J, Raven JA. 2005. CO2 concentrating mechanisms in algae: mechanisms, environmental modulation and evolution. Annual Review of Plant Biology. 56:99-131. Abstract

Liu J, Crawford JW, Leontiou KI. 2005. Collapse of single stable states via a fractal attraction basin: analysis of a representative metabolic network. Proceedings of the Royal Society of London Series A. 461:2327-2338. Abstract

Woodhead M, Russell JR, Squirrell J, Hollingsworth PM, MacKenzie K, Gibby M, Powell W. 2005. Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Molecular Ecology. 14:1681-1695. Abstract

Ibrahim AFM, Hedley PE, Cardle L, Kruger W, Marshall DF, Muehlbauer G, Waugh R. 2005. A comparative analysis of transcript abundance using SAGE and Affymetrix arrays. Functional & Integrative Genomics. 5:163-174. Abstract

Tzortzakakis EA, Trudgill DL. 2005. A comparative study of the thermal time requirements for embryogenesis in Meloidogyne javanica and M. incognita. Nematology. 7:313-315. Abstract

Griffiths BS, Caul S, Thompson J, Birch ANE, Scrimgeour CM, Andersen MN, Cortet J, Mess A, Sausse C, Lacroix B et al.. 2005. A comparison of soil microbial community structure, protozoa and nematodes in field plots of conventional and genetically modified maize expressing the Bacillus thuringiensis CryIAb toxin. Plant and Soil. 275:135-146. Abstract

Lehesranta SJ, Davies HV, Shepherd LVT, Nunan N, McNicol JW, Auriola S, Koistinen KM, Suomalainen S, Kokko HI, K SO. 2005. Comparison of tuber proteomes of potato varieties, landraces and genetically modified lines. Plant Physiology. 138:1690-1699. Abstract

Shi B-J, Palukaitis P, Symons RH. 2005. The conserved 5' termini of RNAs 1 and 2 of Tomato aspermy virus are dispensable for infection but affect virulence. Virus Genes. 30:181-191.

Choi SK, Palukaitis P, Min BE, Lee MY, Choi JK, Ryu KH. 2005. Cucumber mosaic virus 2a polymerase and 3a movement proteins independently affect both virus movement and the timing of symptom development in zucchini squash. Journal of General Virology. 86:1213-1222. Abstract

Bychek EA, Dobson G, Harwood JL, Guschina IA. 2005. Daphnia magna can tolerate short-term starvation without major changes in lipid metabolism. Lipids. 40:599-608. Abstract

Webster EA, Halpin C, Chudek JA, Tilston EL, Hopkins DW. 2005. Decomposition in soil of soluble, insoluble and lignin-rich fractions of plant material from tobacco with genetic modifications to lignin biosynthesis. Soil Biology & Biochemistry. 37:751-760. Abstract

Hallett PD, Newson TA. 2005. Describing soil crack formation using elastic-plastic fracture mechanics. European Journal of Soil Science. 56:31-38. Abstract

Husmeier D, Wright F, Milne I. 2005. Detecting interspecific recombination with a pruned probabilistic divergence measure. Bioinformatics. 21:1797-1806. Abstract

Zhang X, Deeks LK, Bengough AG, Crawford JW, Young IM. 2005. Determination of soil hydraulic conductivity with the lattice Boltzmann method and soil thin-section technique. Journal of Hydrology. 306:59-70.

Swanston JS, Newton AC, Brosnan JM, Fotheringham A, Glasgow E. 2005. Determining the spirit yield of wheat varieties and variety mixtures. Journal of Cereal Science. 42:127-134. Abstract

Hussain S, Lees AK, Duncan JM, Cooke DEL. 2005. Development of a species-specific and sensitive detection assay for Phytophthora infestans and its application for monitoring of inoculum in tubers and soil. Plant Pathology. 54:373-382. Abstract

Oliveira CMG, Fenton B, Malloch G, Brown DJF, Neilson R. 2005. Development of species-specific primers for the ectoparasitic nematode species Xiphinema brevicolle, X. diffusum, X. elongatum, X. ifacolum and X. longicaudatum (Nematoda: Longidoridae) based on ribosomal DNA sequences. Annals of Applied Biology. 146:281-288. Abstract

Silvar C, Duncan JM, Cooke DEL, Williams NA, Diaz J, Merino F. 2005. Development of specific PCR primers for identification and detection of Phytophthora capsici Leon. European Journal of Plant Pathology. 112:43-52.

Ramos MLG, Parsons R, Sprent JI. 2005. Differences in ureide and amino acid content of water stressed soybean inoculated with Bradyrhizobium japonicum and B. elkani. Pesquisa Agropecu. 40:453-458. Abstract

McDougall GJ, Shpiro F, Dobson P, Smith P, Blake A, Stewart D. 2005. Different polyphenolic components of soft fruits inhibit . Journal of Agricultural and Food Chemistry. 53:2760-2766. Abstract

Rehmany AP, Gordon A, Rose LE, Allen RL, Armstrong MR, Whisson SC, Kamoun S, Tyler BM, Birch PRJ, Beynon JL. 2005. Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines. Plant Cell. 17:1839-1850. Abstract

Parr AJ, Mellon FA, Colquhoun IJ, Davies HV. 2005. Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling. Journal of Agricultural and Food Chemistry. 53:5461-5466. Abstract

Isidore E, Scherrer B, Bellec A, Budin K, Faivre-Rampant O, Waugh R, Keller B, Caboche M, Feuillet C, Chalhoub B. 2005. Direct targeting and rapid isolation of BAC clones spanning a defined chromosome region. Functional & Integrative Genomics. 5:97-103. Abstract

Wang J, Zhang X, Bengough AG, Crawford JW. 2005. Domain-decomposition method for parallel lattice Boltzmann simulation of incompressible flow in porous media. Physical Review E. 72:016706-1-016706-11. Abstract

Forster BP, Thomas WTB. 2005. Doubled haploids in genetics and plant breeding. Plant Breeding Reviews. 25:57-80. Abstract

van Haren JLM, Handley LL, Biel KY, Kudeyarov VN, McLain JET, Martens DA, Colodner DC. 2005. Drought-induced nitrous oxide flux dynamics in an enclosed tropical forest. Global Change Biology. 11:1247-1257. Abstract

van de Graaf P, Lees AK, Wale SJ, Duncan AJ. 2005. Effect of soil inoculum level and environmental factors on potato powdery scab caused by Spongospora subterranea. Plant Pathology. 54:22-28. Abstract

Goodman BA, Newton AC. 2005. Effects of drought stress and its sudden relief on free radical processes in barley. Journal of the Science of Food and Agriculture. 85:47-53. Abstract

Stoleriu I, Davidson FA, Liu J. 2005. Effects of periodic input on the quasi-steady state: assumptions for enzyme-catalysed reaction. Journal of Mathematical Biology. 50:115-132.

Bruneau PMC, Davidson DA, Grieve IC, Young IM, Nunan N. 2005. The effects of soil horizons and faunal excrement on bacterial distribution in an upland grassland soil. FEMS Microbiology Ecology. 52:139-144. Abstract

Gomes F, Carr MKV, Squire GR. 2005. Effects of water availability and vine harvesting frequency on the productivity of sweet potato in Southern Mozambique. IV. Radiation, interception, dry matter production and partitioning. Experimental Agriculture. 41:93-108. Abstract

Bohan DA, Boffey CWH, Brooks DR, Clark SJ, Dewar AM, Firbank LG, Haughton AJ, Hawes C, Heard MS, May MJ et al.. 2005. Effects on weed and invertebrate abundance and diversity of herbicide management in genetically modified herbicide-tolerant winter-sown oilseed rape. Proceedings of the Royal Society of London, Series B. 272:463-474. Abstract

Low JN, Scrimgeour CM, Horton P. 2005. Elaidic acid, (trans-9-octadecenoic acid). Acta Crystallographica Section E-Structure Reports Online. E61:3730-3732. Abstract

Grenville-Briggs LJ, Avrova AO, Bruce CR, Williams A, Whisson SC, Birch PRJ, van West P. 2005. Elevated amino acid biosynthesis in Phytophthora infestans during appressorium formation and potato infection. Fungal Genetics and Biology. 42:244-256. Abstract

Kanyuka K, Druka A, Caldwell DG, Tymon A, McCallum N, Waugh R, Adams MJ. 2005. Evidence that the recessive bymovirus resistance locus rym4 in barley corresponds to the eukaryotic translation initiation factor 4E gene. Molecular Plant Pathology. 6:449-458. Abstract

Raven JA, Andrews M, Quigg A. 2005. The evolution of oligotrophy: implications for the breeding of crop plants for low input agricultural systems. Annals of Applied Biology. 146:261-280. Abstract

Stadler R, Wright KM, Lauterbach C, Amon G, Gahrtz M, Feuerstein A, Oparka KJ, Sauer N. 2005. Expression of GFP-fusions in Arabidopsis companion cells reveals non-specific protein trafficking into sieve elements and identifies a novel post-phloem domain in roots. Plant Journal. 41:319-331. Abstract

Andrews M, Maule HG, Raven JA, Mistry A. 2005. Extension growth of Impatiens glandulifera at low irradiance: importance of nitrate and potassium accumulation. Annals of Botany. 95:641-648. Abstract

Whisson SC, Avrova AO, Lavrova O, Pritchard L. 2005. Families of short interspersed elements in the genome of the oomycete plant pathogen, Phytophthora infestans. Fungal Genetics and Biology. 42:351-365. Abstract

Riga E, Neilson R. 2005. First report of the stubby root nematode, Paratrichodorus teres, from potato in the Columbia Basin of Washington State. Plant Disease. 89:1361-1361. Abstract

Karanastasi E, Decraemer W, Kyriakopoulou PE, Neilson R. 2005. First report of the stubby-root nematode Paratrichodorus teres associated with artichoke (Cynara scolymus) in Greece. Plant Disease. 89:-685. Abstract

Rangel-Castro JI, Prosser JI, Ostle N, Scrimgeour CM, Killham K, Meharg AA. 2005. Flux and turnover of fixed carbon in soil microbial biomass of limed and un-limed plots of an upland grassland ecosystem. Environmental Microbiology. 7:544-552. Abstract

Krivtsov V, Liddell K, Bezginova T, Salmond R, Staines HJ, Watling R, Garside A, Thompson JA, Griffiths BS, Brendler A. 2005. Forest litter bacteria: relationships with fungi, microfauna, and litter composition over a winter-spring period. Polish Journal of Ecology. 53:383-394. Abstract

Naglreiter C, Reichenauer TG, Goodman BA, Bolh HR. 2005. Free radical generation in Pinus sylvestris and Larix decidua seeds primed with polyethylene glycol or potassium salt solutions. Plant Physiology and Biochemistry. 43:117-123. Abstract

Chen Q, Rehman S, Smant G, Jones JT. 2005. Functional analysis of pathogenicity proteins of the potato cyst nematode Globodera rostochiensis using RNAi. Molecular Plant-Microbe Interactions. 18:621-625. Abstract

Halpin C. 2005. Gene stacking in transgenic plants - the challenge for 21st century plant biotechnology. Plant Biotechnology Journal. 3:141-155. Abstract