Publications list
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2006.
Characterisation of the cellulose binding protein Mj-cbp-1 of the root knot nematode, Meloidogyne javanica. Physiological and Molecular Plant Pathology. 72:21-28. Abstract
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2008.
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2007.
Nitrogen use efficiency. 3. Nitrogen fixation: genes and costs. Annals of Applied Biology. 155:1-13.
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2009.
An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognised in the host cytoplasm. Proceedings of the National Academy of Sciences, USA. 102:7766-7771. Abstract
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2005.
The demography of feral alfalfa (Medicago sativa L.) populations occurring in road side habitats in southern Manitoba Canada: Implications for novel trait confinement. Environmental Science and Pollution Research. 17:1448-1459.
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2010.
Alteration of the carbon and nitrogen stable isotope composition of beef by substitution of grass silage with maize silage. Rapid Communications in Mass Spectrometry. 19:1937-1942. Abstract
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2005.
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2009.
Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton. New Phytologist. 181:295-309.
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2009.
Aorta protein networks in marginal and acute zinc deficiency. Proteomics. 8:2126-2135. Abstract
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2008.
Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology. 8:333-341. Abstract
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2007.
Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract
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2005.
A spatio-temporal analysis of a New Zealand flatworm (Arthurdendyus triangulatus) population in western Scotland. Annals of Applied Biology. 147:81-88. Abstract
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2005.
A qualitative multi-attribute model for assessing the impact of cropping systems on soil quality. Pedobiologia. 51:239-250. Abstract
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2007.
Biochemical properties and biodegradation of dissolved organic matter from soils. Biology and Fertility of Soils. 45:733-742. Abstract
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2009.
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2007.
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2006.
Live biospeckle laser imaging of root tissues. European Biophysics Journal. 38:679-686. Abstract
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2009.
An efficient procedure for normalising ionomics data for Arabidopsis thaliana. New Phytologist. 186:270-274.
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2010.
The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract
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2008.
Root and foot rot of Lantana caused by Phytophthora cryptogea. Plant Disease. 89:909-909. Abstract
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2005.
First report of brown rot and wilt of fennel caused by Phytophthora megasperma in Italy. Plant Disease. 90:-110. Abstract
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2006.
The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.
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2010.
A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro. Journal of Molecular Biology. 376:932-937. Abstract
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2008.
Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract
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2006.
Signaling in induced resistance. Advances in Virus Research. 76:57-121.
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2010.
Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.
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2010.
Functional analysis of pathogenicity proteins of the potato cyst nematode Globodera rostochiensis using RNAi. Molecular Plant-Microbe Interactions. 18:621-625. Abstract
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2005.
Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity. EMBO Journal. 29:1149-1161.
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2010.
The effect of semi-dwarf genes on root system size in field-grown barley. Theoretical and Applied Genetics. 112:779-786. Abstract
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2006.
Cucumber mosaic virus 2a polymerase and 3a movement proteins independently affect both virus movement and the timing of symptom development in zucchini squash. Journal of General Virology. 86:1213-1222. Abstract
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2005.
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2007.
Stability of recombinant plant viruses containing genes of unrelated plant viruses. Journal of General Virology. 88:1347-1355. Abstract
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2007.
Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics. 10:-582.
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2009.
Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.
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2009.
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research. 38:1767-1771.
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2010.
Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
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2009.
Phenotypical and molecular characterization of Tomato mottle Taino virus - Nicotiana megalosiphon interaction. Physiological and Molecular Plant Pathology. 67:231-236. Abstract
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2006.
Mapping adaptation of barley to droughted environments. Euphytica. 161:35-45. Abstract
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2008.
Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina. Forest Pathology. 35:57-70. Abstract
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2005.
Estimating the annual number of breeding attempts from breeding dates using mixture models. Ecology Letters. 12:1184-1193.
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2009.
Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract
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2006.
Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
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2007.
Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
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2009.
Heading date QTL in a spring x winter barley cross evaluated in Mediterranean environments. Molecular Breeding. 21:455-471. Abstract
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2008.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
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2009.
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2007.
Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
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2005.
Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.
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2009.
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
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2010.
Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
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2008.
Introduction to biohydrology. BiologiaBiohydrology, Special Issue, Biologia 61/Supplement 19. 61, Suppl 19:223-224. Abstract
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2006.
Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.
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2010.
Phytophthora captiosa sp. nov and Phytophthora fallax sp. nov causing crown dieback of Eucalyptus in New Zealand. Mycological Research. 110:393-404. Abstract
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2006.
Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycological Research. 110:1309-1322. Abstract
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2006.
Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
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2010.
An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics. 6:202-211. Abstract
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2006.
Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.
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2010.
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2008.
Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38:683-688.
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2010.
Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley. Theoretical and Applied Genetics. 117:261-272. Abstract
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2008.
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2006.
A simple and rapid method for labelling earthworms with 15N and 13C. Soil Biology & Biochemistry. 37:989-993. Abstract
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2005.
Closure threat to key museum research facility. Nature. 465:-1005.
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2010.
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2005.
Chemical characterization of microbial-dominated soil organic matter in the Garwood Valley, Antarctica. Geochimica et Cosmochimica Acta. 74:6485-6498.
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2010.
Cereal breeding takes a walk on the wild side. Trends in Genetics. 24:24-32. Abstract
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2008.
Meeting Report: The Aaronsohn-ITMI International Conference. Israel Journal of Plant Sciences. 55:315-319.
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2007.
Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
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2010.
Is the growth rate hypothesis applicable to microalgae? Journal of Phycology. 46:1-12.
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2010.
Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
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2005.
The resurgence of haploids in higher plants. Trends in Plant Science. 12:368-375. Abstract
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2007.
The barley phytomer. Annals of Botany. 100:725-733. Abstract
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2007.
Antioxidant properties and neuroprotective capacity of strawberry tree fruit (Arbutus unedo). Nutrients. 2:214-229.
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2010.
Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants. Journal of General Virology. 89:829-838. Abstract
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2008.
The dark side of the mycorrhiza. Plant Signaling & Behavior. 5:1019-1021.
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2010.
Differential interaction of Aspergillus niger and Peniophora lycii phytases with soil particles affects the hydrolysis of inositol phosphates. Soil Biology & Biochemistry. 39:793-803. Abstract
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2007.
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2009.
Accumulation and phosphatase-lability of organic phosphorus in fertilised pasture soils. Australian Journal of Agricultural Research. 58:47-55. Abstract
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2007.
Depletion of organic phosphorus from Oxisols in relation to phosphatase activities in the rhizosphere. European Journal of Soil Science. 57:47-57. Abstract
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2006.
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2008.
The mitochondrial subgenomes of the nematode Globodera pallida are mosaics: Evidence of recombination in an animal mitochondrial genome. Journal of Molecular Evolution. 64:463-471. Abstract
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2007.
Sequence and characterization of six mitochondrial subgenomes from Globodera rostochiensis: multipartite structure is conserved amongst close nematode relatives. Journal of Molecular Evolution. 65:308-315. Abstract
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2007.
Metabolic engineering of carotenoid biosynthesis in plants. Trends in Biotechnology. 26:139-145. Abstract
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2008.
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2005.
White and green tea polyphenols inhibit pancreatic lipase in vitro. Food Research International. 43:1537-1544.
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2010.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
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2009.
Tillage-induced environmental conditions in soil and substrate limitation determine biogenic gas production. Soil Biology & Biochemistry. 38:2614-2628. Abstract
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2006.
Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
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2009.
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2008.
Restoration of soil physical and biological stability are not coupled in response to plants and earthworms. Ecological Restoration. 26:102-104. Abstract
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2008.
Varietal effects of eight paired lines of transgenic Bt maize and near-isogenic non-Bt maize on soil microbial and nematode community structure. Plant Biotechnology Journal. 5:60-68. Abstract
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2007.
Soil microbial and faunal community responses to Bt maize and insecticide in two soils. Journal of Environmental Quality. 35:734-741. Abstract
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2006.
Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
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2007.
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2005.
Chemical characterisation of bog peat and dried peat of the Australian Alps. Australian Journal of Soil Research. 43:963-971. Abstract
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2005.
Microbial community structure in soils with decomposing residues from plants with genetic modifications to lignin biosynthesis. FEMS Microbiology Letters. 263:68-75. Abstract
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2006.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
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2009.
Soil fauna-microbe interactions: towards a conceptual framework for research. European Journal of Soil Biology. 42:S54-S60. Abstract
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2006.
Nucleolar localisation of Potato leafroll virus capsid proteins. Journal of General Virology. 86:2891-2896. Abstract
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2005.
The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: Enoplea):considerable economization in the length and structural features of encoded genes. Journal of Molecular Evolution. 61:819-833. Abstract
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2005.
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2006.
Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley. Plant Physiology. 138:2155-2164. Abstract
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2005.
An allelic series reveals essential roles for FY in plant development in addition to flowering-time control. Development. 132:3597-3607. Abstract
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2005.
How do plants respond to nutrient shortage by biomass allocation? Trends in Plant Science. 11:610-617. Abstract
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2006.
Plant treatment, pollutant load and soil type effects in the rhizosphere ecology of trace element polluted soils. Ecotoxicology and Environmental Safety. 73:970-981. Abstract
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2010.
Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract
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2005.
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2005.
Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
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2010.
Yeast two-hybrid study of tobacco rattle virus coat protein and 2b protein interactions. Archives of Virology. 151:2123-2132. Abstract
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2006.
Real-time PCR detection and quantification of vector trichodorid nematodes and Tobacco rattle virus. Molecular and Cellular Probes. 20:203-211. Abstract
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2006.
Isotopic evidence for the provenance and turnover of organic carbon by soil microorganisms in the Antarctic dry valleys. Environmental Microbiology. 11:597-608. Abstract
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2009.
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2008.
Controls on the distribution of productivity and organic resources in Antarctic dry valley soils (Review). Proceedings of the Royal Society B. 273:2687-2695. Abstract
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2006.
Enzymatic activities and microbial communities in an Antarctic dry valley soil: Responses to C and N supplementation. Soil Biology & Biochemistry. 40:2130-2136. Abstract
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2008.
Genetically modified lignin belowground. Nature Biotechnology. 25:168-169. Abstract
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2007.
Immunogenicity of proteome-determined Mycobacterium avium subsp paratuberculosis-specific proteins in sheep with Paratuberculosis. Clinical and Vaccine Immunology. 15:1824-1833.
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2008.
Ethylene and carbon dioxide production by developing strawberries show a correlative pattern that is indicative of ripening climacteric fruit. Physiologia Plantarum. 127:247-259. Abstract
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2006.
Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
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2008.
Direct targeting and rapid isolation of BAC clones spanning a defined chromosome region. Functional & Integrative Genomics. 5:97-103. Abstract
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2005.
Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract
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2008.
Ancient origin of elicitin gene clusters in Phytophthora genomes. Molecular Biology and Evolution. 23:338-351. Abstract
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2006.
Non-invasive techniques for investigating and modelling root-feeding insects in managed and natural systems. Agricultural and Forest Entomology. 9:39-46.
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2007.
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2007.
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2005.
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2009.
Bursaphelenchus xylophilus: opportunities in comparative genomics and molecular host-parasite interactions (Review). Molecular Plant Pathology. 9:357-368. Abstract
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2008.
Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
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2009.
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
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2010.
Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome. Molecular Plant-Microbe Interaction. 21:433-447. Abstract
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2008.
Point mutations in the potato leafroll virus major capsid protein alter virion stability and aphid transmission. Journal of General Virology. 88:1821-1830. Abstract
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2007.
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2009.
Inorganic carbon acquisition by eight species of Caulerpa (Caulerpaceae, Chlorophyta). Phycologia. 45:442-449. Abstract
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2006.
Interval mapping of quantitative trait loci for corky ringspot disease resistance in a tetraploid population of potato (Solanum tuberosum subsp. tuberosum). American Journal of Potato Research. 85:129-139. Abstract
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2008.
Molecular and biochemical characterization of an endo-. Biochemical Journal. 389:117-125. Abstract
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2005.
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2009.
Cloning and characterization of pectate lyases expressed in the esophageal gland of the pine wood nematode Bursaphelenchus xylophilus. Molecular Plant-Microbe Interactions. 19:280-287. Abstract
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2006.
Changes in growth, internode distance and nutrient concentrations of the seagrass Halophila ovalis with exposure to sediment sulphide. Marine Ecology-Progress Series. 361:83-91. Abstract
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2008.
Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli. Nucleic Acids Research. 38:3054-3067.
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2010.
Cajal bodies and the nucleolus are required for a plant virus systemic infection. EMBO Journal. 26:2169-2179. Abstract
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2007.
Analysis of anthocyanin composition and content contained from grains of the Korean purple rice varieties by liquid chromatography with diode array detection and electrospray ionization/mass spectrometry (LC-DAD-ESI/MS). Korean Journal of International Agriculture. 22:267-272.
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2010.
Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.
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2007.
Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Functional & Integrative Genomics. 8:329-340. Abstract
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2008.
Development and mapping of DArT markers within the Festuca - Lolium complex. BMC Genomics. 10:-473.
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2009.
Analysis of RNA silencing in agroinfiltrated leaves of Nicotiana benthamiana and Nicotiana tabacum. Plant Molecular Biology. 59:647-661. Abstract
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2005.
Characterisation of a novel air-liquid interface biofilm of Pseudomonas fluorescens SBW25. Microbiology. 155:1397-1406.
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2009.
ECOGEN - Soil ecological and economic evaluation of genetically modified crops. Pedobiologia. 51:171-173. Abstract
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2007.
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2008.
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2010.
Plant-soil feedbacks contribute to an intransitive competitive network that promotes both genetic and species diversity. Journal of Ecology. 99:176-185.
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2010.
Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations. Journal of Nematology. 38:404-410. Abstract
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2006.
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2007.
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2009.
A surface loop of the potato leafroll virus coat protein is involved in virion assembly, systemic movement and aphid transmission.. Journal of Virology. 79:1207-1214. Abstract
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2005.
GERMINATE - A generic database for integrating genotypic and phenotypic information for plant genetic resource collections. Plant Physiology. 139:619-631. Abstract
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2005.
Novel microsatellite markers for the analysis of Phytophthora infestans populations. Plant Pathology. 55:311-319. Abstract
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2006.
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2007.
Proteomic analysis of the potato tuber life cycle. Proteomics. 6:6042-6052. Abstract
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2006.
Comparison of tuber proteomes of potato varieties, landraces and genetically modified lines. Plant Physiology. 138:1690-1699. Abstract
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2005.
The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant-Microbe Interactions. 22:642-654. Abstract
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2009.
Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Molecular Biology and Evolution. 22:659-672. Abstract
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2005.
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2007.
Rice responses to soil management in rice-based cropping system in the semi-arid tropics of southern Lombok, Eastern Indonesia. Field Crops Research. 110:197-206. Abstract
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2009.
The role of rainfall intensity and soil in determining rates of flow through cryoturbated chalk. Pakistan Journal of Science and Industrial Research. 51:235-241.
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2008.
Solute movement through intact columns of cryoturbated Upper Chalk. Hydrological Processes. 22:2086-2093. Abstract
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2008.
Domain organization of the N-terminal portion of hordeivirus movement protein TGBp1. Journal of General Virology. 90:3022-3032.
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2009.
The internal domain of hordeivirus movement protein TGB1 forms in vitro filamentous structures.. Biochemistry (Moscow). 75:752-758.
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2010.
Bacterial-feeding nematodes enhance root growth of tomato seedlings. Soil Biology & Biochemistry. 38:1615-1622. Abstract
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2006.
Do bacterial-feeding nematodes stimulate root proliferation through hormonal effects? Soil Biology & Biochemistry. 39:1816-1819. Abstract
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2007.
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2009.
Agent-based modelling of foraging behaviour: the impact of spatial heterogeneity on disease risks from faeces in grazing systems. Journal of Agricultural Science. 146:507-520. Abstract
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2008.
Quantitative evolution of aggressiveness of powdery mildew under two-cultivar barley mixtures. Plant Pathology. 58:378-388. Abstract
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2009.
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2006.
Development and quality of cloudberry (Rubus chamaemorus L) as affected by female parent, male parent and temperature. Journal of Berry Research. 1:91-101.
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2010.
Characterization of the interactions between Cucumber mosaic virus and Potato virus Y in mixed infections in tomato. Molecular Plant-Microbe Interactions. 23:1514-1524.
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2010.
An alternative to radiation hybrid mapping for large-scale genome analysis in barley. Molecular Genetics and Genomics. 274:589-594. Abstract
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2005.
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2007.
Ambiguous genetic relationships among coconut (Cocos nucifera L.) cultivars: the effects of outcrossing, sample source and size, and method of analysis. Genetic Resources and Crop Evolution. 57:203-217.
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2010.
Potato glycosterol rhamnosyltransferase, the terminal step in triose side-chain biosynthesis. Phytochemistry. 68:327-334. Abstract
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2007.
The primary in vivo steroidal alkaloid glucosyltransferase from potato. Phytochemistry. 67:1590-1597. Abstract
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2006.
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2005.
Codeposition of organic carbon and arsenic in Bengal Delta aquifers. Environmental Science & Technology. 40:4928-4935. Abstract
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2006.
Resistance of simple plant root systems to uplift loads. Canadian Geotechnical Journal. 47:78-95. Abstract
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2010.
Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics. 110:613-619.
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2005.
Spatial pattern and species richness of boreonemoral forest understorey and its determinants - A comparison of differently managed forests. Forest Ecology & Management. 250:64-70. Abstract
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2007.
Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology. 114:325-339.
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2010.
Phytophthora parsiana sp. nov., a new high-temperature tolerant species. Mycological Research. 112:783-794. Abstract
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2008.
What contribution do detergent fatty alcohols make to sewage discharges and the marine environment? Journal of Environmental Monitoring. 12:1846-1856.
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2010.
A hAT superfamily tranposase recruited by the cereal grass genome. Molecular Genetics and Genomics. 275:553-563. Abstract
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2006.
The tomato sequencing project, the first cornerstone of the international Solanaceae project (SOL). Comparative and Functional Genomics. 6:153-158. Abstract
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2005.
Rubus fruit juices affect lipid peroxidation in a Drosophila melanogaster model in vivo.. Journal of Agricultural and Food Chemistry. 53:7728-7733. Abstract
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2005.
Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract
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2005.
Systemic Potato virus X infection induces defence gene expression and accumulation of . Functional Plant Biology. 33:593-604. Abstract
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2006.
Annual carbon fixation in terrestrial populations of Nostoc commune (Cyanobacteria) from an Antarctic dry valley is driven by temperature regime. Global Change Biology. 13:1224-1237. Abstract
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2007.
Development of a virus-induced gene silencing system in pearl millet. South African Journal of Botany. 73:339-339. Abstract
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2007.
Hemicelluloses and pectins in 25 tropical hardwoods. Cellulose Chemistry and Technology. 40:735-738. Abstract
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2006.
Characterization of 25 tropical hardwoods with Fourier transform infrared,ultraviolet resonance Raman and 13C cross-polarisation magic-angle spinning NMR spectroscopy. Journal of Applied Polymer Science. 102:810-819. Abstract
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2006.