Publications list
Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India. Scientific Reports. 8:ArticleNo.4429.
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2018.
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2012.
Early-life residential exposure to soil components in rural areas and childhood respiratory health and allergy. Science of the Total Environment. 466-467:338-344.
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2014.
Early childhood wheezing symptoms in relation to plasma selenium in pregnant mothers and neonates. Clinical and Experimental Allergy. 37:1000-1008.
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2007.
Experimentally altered rainfall regimes and host root traits affect grassland arbuscular mycorrhizal fungal communities. Molecular Ecology. 27:2152-2163.
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2018.
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2015.
Thermophilic versus mesophilic dark fermentation in xylose-fed fluidised bed reactors: Biohydrogen production and active microbial community. International Journal of Hydrogen Energy. 43:5473-5485.
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2018.
Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.
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2010.
Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method. Veterinary Parasitology. 188:120-126.
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2012.
Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.
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2008.
The effects of livestock grazing on foliar arthropods associated with bird diet in upland grasslands of Scotland. Journal of Applied Ecology. 45:279-287.
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2008.
A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
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2008.
Microbial responses to carbon and nitrogen supplementation in an Antarctic dry valley soil. Soil Biology and Biochemistry. 25:55-61.
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2013.
Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
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2009.
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2012.
GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia. 48:331-347.
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2018.
GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia. 48:331-347.
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2018.
A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris L. Medic (shepherd's purse). Annals of Botany. 109:419-427.
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2012.
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2015.
Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.
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2010.
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2013.
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2014.
Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes. PLoS Pathogens. 10:ArticleNo.e1004391.
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2014.
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2014.
Hydrological pulses and burning of dissolved organic carbon by stream respiration. Limnology and Oceanography. 64:406-421.
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2019.
River macrophyte indices: not the Holy Grail!. Freshwater Biology. 57:1745-1759.
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2012.
Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.
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2011.
Distribution of aquatic plants in the Northern Vosges rivers: implications for biomonitoring and conservation. Aquatic Conservation: Freshwater and Marine Ecosystem. 18:619-632.
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2008.
Aquatic macrophytes as bioindicators of carbon dioxide in groundwater fed rivers. The Science of the Total Environment. 407(16):4752-4763.
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2009.
Macroinvertebrate abundance and proportion of trait categories in river biotopes across England and Wales. PANGEAE database Supplement to: Demars, B.O.L.; Kemp, J.L.; Friberg, N.; Usseglio-Polatera, P.; Harper, D.M. (2012): Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators.. 23:301-311.
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2012.
Tissue nutrient concentrations in freshwater aquatic macrophytes: high inter-taxon differences and low phenotypic response to nutrient supply. Freshwater Biology. 52(22):2073-2086.
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2007.
Stream hydraulics and temperature determine the metabolism of geothermal Icelandic streams. Knowledge Management of Aquatic Ecosystem. 402:17pp.
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2011.
Stream metabolism and the open diel oxygen method: principles, practice and perspectives. Limnology and Oceanography: Methods. 13:356-374.
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2015.
Tissue nutrient concentrations in aquatic macrophytes: comparison across biophysical zones, surface water habitats and plant life forms. Chemistry and Ecology. 24(6):413-422.
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2008.
Distribution of aquatic macrophytes in contrasting river systems: a critique of compositional-based assessment of water quality. The Science of the Total Environment. 407(2):975-990.
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2009.
Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators. 23:301-311.
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2012.
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2013.
A seasonal survey of surface water habitats within the River Spey basin, Scotland: major nutrient properties. Aquatic Conservation: Marine and Freshwater Ecosystems. 17(6):565-583.
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2007.
Impact of warming on CO2 emissions from streams countered by aquatic photosynthesis. Nature Geoscience. 9:758-761.
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2016.
Stream macroinvertebrates and carbon cycling in tangled food webs. Ecosystems. Published online..
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2021.
Whole stream phosphorus cycling: testing methods to assess the effect of saturation of sorption capacity on nutrient uptake length measurements. Water Research. 42(10-11):2507-2516.
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2008.
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2013.
Microbial soil community analyses for forensic science: application to a blind test. Forensic Science International. 270:153-158.
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2017.
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2019.
It is elemental: soil nutrient stoichiometry drives bacterial diversity. Environmental Microbiology. 19:1176-1188.
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2017.
Lack of functional redundancy in the relationship between microbial diversity and ecosystem functioning. Journal of Ecology. 104:936-946.
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2016.
Microbial diversity drives multifunctionality in terrestrial ecosystems. Nature Communications. 7
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2016.
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proceedings of the National Academy of Sciences of the United States of America. 117:2551-2559.
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2020.
Introduction to biohydrology. BiologiaBiohydrology, Special Issue, Biologia 61/Supplement 19. 61, Suppl 19:223-224. Abstract
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2006.
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2010.
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2009.
A simple integrative assay to quantify nutritional quality for browsing herbivores. Oecologia. 156(1):107-116.
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2008.
The presence of sheep leads to increases in plant diversity and reductions in the impact of deer on heather. Journal of Applied Ecology. 48:1269-1277.
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2011.
Inter-population differences in the tolerance of a marsupial folivore to plant secondary metabolites. Oecologia.. 161(3):539-548.
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2009.
Defence response of Sitka spruce before and after inoculation with Heterobasidion annosum: 1H NMR fingerprinting of bark and sapwood metabolites. Analytical and Bioanalytical Chemistry. 402:3333-3344.
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2012.
Data and models for exploring sustainability of human well-being in global environmental change. European Physical Journal Special Topics.. 214:519-545.
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2012.
Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348(3-4):431-441.
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2008.
A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Current Biology. 22:1595-1600.
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2012.
Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348:431-441. Abstract
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2008.
Analysis of time series data on agroecosystem vegetation using predictive clustering trees. Ecological Modelling. 222:2524-2529.
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2011.
Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25(1):66-77.
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2008.
Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
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2009.
Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
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2008.
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2019.
Analyzing lateral root development: how to move forward. The Plant Cell. 24:15-20.
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2012.
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2016.
Mesorhizobium carmichaelinearum sp. nov., isolated from Carmichaelineae spp. root nodules. International Journal of Systematic and Evolutionary Microbiology. 69:146-152.
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2019.
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2014.
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
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2010.
Morphological and genetic characterisation of the root system architecture of selected barley recombinant chromosome substitution lines using an integrated phenotyping approach. Journal of Theoretical Biology. 447:84-97.
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2018.
Genetic dissection of quantitative and qualitative traits using a minimum set of barley recombinant chromosome substitution lines. BMC Plant Biology. 18:ArticleNo.340.
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2018.
"Health in" and "Health of" social-ecological systems: a practical framework for the management of healthy and resilient agricultural and natural ecosystems. Frontiers in Public Health. 8:ArticleNo.616328.
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2021.
Insights into the evolution of multicellularity from the sea lettuce genome. Current Biology. 28:2921-2933.
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2018.
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2021.
Open-system chemical behavior in deep Wilcox Group mudstones, Texas Gulf. Marine and Petroleum Geology.. 27(9):1804-1818.
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2010.
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2010.
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2008.
Discussion in response to Knut Bjorlykke regarding JMPG_1376 "Open-System Chemical Behavior In Deep Wilcox Group Mudstones, Texas Gulf Coast, USA". Marine and Petroleum Geology. 28:1383-1384.
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2011.
Linking biosensor responses to Cd, Cu and Zn partitioning in soils. Environmental Pollution. 142(3):493-500.
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2006.
Seasonal controls on DOC dynamics in nested upland catchments in NE Scotland. Hydrological Processes. 25:1647-1658.
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2011.
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2013.
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2011.
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2017.
Measurement of soil characteristics for forensic applications. Surface and Interface Analysis. 42(5):363-377.
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2010.
Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.
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2009.
The biogeochemical reactivity of suspended particulate matter at nested sites in the Dee basin, NE Scotland. Science of the Total Environment. 434:159-170.
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2012.
Barley: a translational model for adaptation to climate change. New Phytologist. 206:913-931.
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2015.
Integrative management to mitigate diffuse pollution in multi-functional landscapes. Current Opinions in Environmental Sustainability. 2(5-6):375-382.
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2010.
Influence of hydrology and seasonality on long-term DOC exports from three contrasting upland catchments. Biogeochemistry. 90(1):93-113.
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2008.
Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages. FEMS Microbiology Ecology. 78:103-115.
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2011.
Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.
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2020.
Contrasting nutrient-disease relationships: Potassium gradients in barley leaves have opposite effects on two fungal pathogens with different sensitivities to jasmonic acid. Plant Cell and Environment. 41:2357-2372.
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2018.
Measuring heterogeneity in soil networks: a network analysis and simulation-based approach. Ecological Modelling. 439:ArticleNo.109308.
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2021.
Exploring environmental perspectives in arable agriculture: a Q methodology study in East Anglia, UK. Ecological Economics. 61(2-3):323-333.
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2007.
Collaboration in natural resource governance: Reconciling stakeholder expectations in deer management in Scotland. Journal of Environmental Management.. 112:160-169.
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2012.
Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.
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2010.
Palaeo-environments and human experience. Archaeological Dialogues. 19:51-54.
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2012.
Farmers' preferences for new environmental policy instruments: determining the acceptability of cross compliance for biodiversity benefits. Journal of Agricultural Economics. 57(3):393-414.
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2006.
Use of multicriteria decision analysis to address conservation conflicts. Conservation Biology. 27:936-944.
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2013.
Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
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2005.
Genotypic variation in a foundation tree (Populus tremula L.) explains community structure of associated epiphytes. Biology Letters. 10:ArticleNo.20140190.
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2014.
GM organisms and the EU regulatory environment.. Proceedings of the Nutrition Society. 64:481-486.
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2005.
Long-term approaches to native woodland restoration: Palaeoecological and stakeholder perspectives on Atlantic forests of Northern Europe. Forest Ecology and Management. 261:751-763.
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2011.
Advances in functional genomics and genetic modification of potato (Review). Potato Research. 51:283-299. Abstract
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2008.
The role of 'omics' technologies in food safety assessment. Food Control. 21:1601-1610.
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2010.
Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
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2009.
Effects of host social hierarchy on disease persistence. Journal of Theoretical Biology. 253:424-433. Abstract
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2008.
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2007.
Genome editing of potato using CRISPR technologies: current development and future prospective. Plant Cell, Tissue and Organ Culture. 139:403-416.
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2019.
A comparison of mainstream genotyping platforms for the evaluation and use of barley genetic resources. Frontiers in Plant Science. 10:ArticleNo.544.
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2019.
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2018.
Alternative splicing of circadian clock genes correlates with temperature in field-grown sugarcane. Frontiers in Plant Science. 10:ArticleNo.1614..
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2019.
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2014.
Improved real-time PCR estimation of gene copy number in soil extracts using an artificial reference. Journal of Microbiological Methods. 91:38-44.
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2012.
Agenda-setting and power in collaborative natural resource management. Environmental Conservation. 41:311-320.
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2014.
Horizontal gene transfer from bacteria has enabled the plant-parasitic nematode Globodera pallida to feed on plant-derived sucrose. Molecular Biology and Evolution. 33:1571-1579.
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2016.
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2017.
RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family. Plant Biotechnology Journal.. 17:594-607.
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2019.
Historical influences on the current provision of multiple ecosystem services. Global Environmental Change - Human and Policy Dimensions. 31:307-317.
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2015.
Quantifying preferences for the natural world using monetary and non-monetary assessments of value. Conservation Biology. 28:404-413.
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2014.
What personal and environmental factors determine frequency of urban greenspace use? International Journal of Environmental Research and Public Health. 11:7977-7992.
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2014.
Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:16969-16973.
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2012.
Waste recovered by-products can increase growth of grass-clover mixtures in low fertility soils and alter botanical and mineral nutrient composition. Annals of Applied Biology. 166:105-117.
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2015.
Soil amendment affects Cd uptake by wheat - are we underestimating the risks from chloride inputs? Science of the Total Environment. 554:349-357.
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2016.
Revisiting herbage sample collection and preparation procedures to minimise risks of trace element contamination. European Journal of Agronomy. 43:33-39.
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2012.
Polyphenols are responsible for the pro-apoptotic properties of pemegranate juice on leukemia cell lines. Food Science & Nutrition. 1:196-208.
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2013.
Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.
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2010.
Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.
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2010.
Differences in virulence between bovine-derived clinical isolates of pasteurella multocida serotype A from the UK and the USA in a model of bovine pneumonic pasteurellosis. Journal of Comparative Pathology. 155:62-71.
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2016.
Pore shape and organic compounds drive major changes in the hydrological characteristics of agricultural soils. European Journal of Soil Science. 64:334-344.
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2013.
A method-centric 'User Manual' for the mitigation of diffuse water pollution from agriculture. Soil Use and Management. 32:162-171.
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2016.
Differentiating outdoor recreation: evidence drawn from national surveys in Scotland. Journal of Policy Research in Tourism, Leisure and Events. 2(1):29-50.
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2010.
Greenspace matters: exploring links between greenspace, gender and well-being with conservation volunteers. Landscape Research. 41:641-651.
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2016.
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2015.
Outdoor recreation for older adults in Scotland: qualitatively exploring the multiplicity of constraints to participation. International Journal of Environmental Research and Public Health. 18:ArticleNo.7705.
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2021.
Five years of simulated atmospheric nitrogen deposition have only subtle effects on the fate of newly synthesized carbon in Calluna vulgaris and Eriophorum vaginatum. Soil Biology and Biochemistry. 43:495-502.
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2011.
Turnover of labile and recalcitrant soil carbon differ in response to nitrate and ammonium deposition in an ombrotrophic peatland. Global Change Biology. 16(8):2307-2321.
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2010.
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2011.
Converting Australian tropical rainforest to native Araucariaceae plantations alters soil fungal communities. Soil Biology and Biochemistry. 42(1):14-20.
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2010.
Effector-decoy pairs: another countermeasure emerging during host-microbe co-evolutionary arms races? Molecular Plant. 10:662-664.
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2017.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
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2009.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology. 11(10):2510-2525.
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2009.
Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape. Journal of the Science of Food and Agriculture. 88:2253-2264. Abstract
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2008.
Comparison of DNA walking methods for isolation of transgene flanking regions in GM potato. Molecular Biotechnology. 49:19-31.
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2011.
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2007.
Detection of the nec1 virulence gene and its correlation with pathogenicity in Streptomyces species on potato tubers and in soil using conventional and realtime PCR. Journal of Applied Microbiology. 102:1082-1094. Abstract
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2007.
Use of quantitative molecular diagnostic assays to investigate Fusarium dry rot in potato stocks and soil. Phytopathology. 95:1462-1471. Abstract
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2005.
Heavy metals in sediment from the urban and rural rivers in Harbin City, Northeast China. International Journal of Environmental Research and Public Health. 16:ArticleNo.4313.
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2019.
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2020.
Polycyclic aromatic hydrocarbons in fresh snow in the city of Harbin in northeast China. Atmospheric Environment. 215
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2019.
Effects of season and sediment-water exchange processes on the partitioning of pesticides in the catchment environment: Implications for pesticides monitoring. Science of the Total Environment. 698:ArticleNo.134228.
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2020.
Concentrations and uptake pathways of polychlorinated biphenyls from soil to grass. Ecotoxicology and Environmental Safety. 182:ArticleNo.109428.
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2019.
Modeling primary and secondary fractionation effects and atmospheric transport of polychlorinated biphenyls through single-source emissions. Environmental Geochemistry and Health. 41:1939-1951.
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2019.
Heading date QTL in a spring x winter barley cross evaluated in Mediterranean environments. Molecular Breeding. 21:455-471. Abstract
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2008.
A metabolic regulator modulates virulence and quorum sensing signal production in Pectobacterium atrosepticum. Molecular Plant Microbe Interactions. 26:356-366.
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2013.
Bats like vintage: managing exotic eucalypt plantations for bat conservation in a Mediterranean landscape. Animal Conservation. 19:53-64.
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2016.
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2020.
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2015.
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2016.
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2016.
The interactive responses of water quality and hydrology to changes in multiple stressors, and implications for the long-term effective management of phosphorus. Science of the Total Environment. 454:230-244.
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2013.
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2009.
Lichen response to ammonia deposition defines the footprint of a penguin rookery. Biogeochemistry. 122:295-311.
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2015.
Lichen response to ammonia deposition defines the footprint of a penguin rookery. Biogeochemistry. 122:295-311.
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1992.
Re-establishment of Calluna vulgaris (L.) Hull in an eight-year grazing experiment on upland acid grassland. Journal of Nature Conservation. 21:22-30.
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2013.
A two-point method for determining the soil water characteristic of typical northern temperate boreal soils. Geoderma Regional. 5:71-76.
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2015.
The contribution of healthcare smart homes to older people's wellbeing: a new conceptual framework. Wellbeing, Space and Society. 2:ArticleNo.100031.
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2021.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. 132:210-233.
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2016.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. Published online..
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2016.
Community energy: entanglements of community, state and private sectors. Geography Compass. 12:ArticleNo.e12378.
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2018.
Do elevated soil concentrations of metals affect the diversity and activity of soil invertebrates in the long-term? Soil Use and Management. 24(1):27-46.
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2008.
An inter-laboratory comparison of multi-enzyme and multiple substrate-induced respiration assays to assess method repeatability in soil monitoring. Biology and Fertility of Soils. 45(6):623-633.
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2009.
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2011.
Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
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2009.
The influences of actual and perceived familiarity on environmental preferences for the design of a proposed urban square. Urban Studies Research, Article id 767048, 9pp..
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2012.
Shopping versus being in nature? An exploratory study of everyday experiences Frontiers in Psychology. 9:Article9.
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2018.
Shopping versus being in nature? An exploratory study of everyday experiences Frontiers in Psychology.
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2018.
The North East Scotland Energy Monitoring Project: Exploring relationships between household occupants and energy usage. Energy and Buildings. 75:493-503.
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2014.
Transmission of pro-environmental norms in large organizations. Sustainable Production and Consumption. 19:25-32.
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2019.
Prior host feeding experience influences ovipositional but not feeding preference in a polyphagous insect herbivore. Entomologia Experimentalis et Applicata. 138:137-145.
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2011.
A multi-site assessment of the effectiveness of Pteridium aquilinum control in Great Britain. Applied Vegetation Science. 10:429-440.
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2007.
Factors affecting the restoration of heathland and acid grassland on Pteridium aquilinum-infested land across the UK: a multi site study. Restoration Ecology. 16(4):553-562.
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2008.
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2012.
Potato mop-top virus co-opts the stress sensor HIPP26 for long-distance movement. Plant Physiology. 176:2052-2070.
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2018.
Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. Applied and Environmental Microbiology. 79:4421-4432.
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2013.
Evaluation of the efficacy of clinical diagnosis of ovine pulmonary adenocarcinoma. Veterinary Record. 162:88-90. Abstract
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2008.
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2009.
The role of natural heritage in rural development: an analysis of economic linkages in Scotland. Journal of Rural Studies. 22(4):469-484.
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2006.
DsbA plays a critical and multifaceted role in the production of secreted virulence factors by the phytopathogen, Erwinia carotovora subsp. atroseptica. Journal of Biological Chemistry. 283:23739-23753. Abstract
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2008.
Characterisation of barley resistance to rhynchosporium on chromosome 6HS. Theoretical and Applied Genetics. 132:1089-1107.
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2019.
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2021.
Gas chromatographic metabolic profiling: A sensitive tool for functional microbial ecology. Journal of Microbiological Methods. 75:491-500. Abstract
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2008.
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2014.
Mapping land cover from detailed aerial photography data using textural and neural network analysis. International Journal of Remote Sensing. 28(7-8):1625-1642.
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2007.
Mapping land cover from detailed aerial photography data using textural and neural network analysis. International Journal of Remote Sensing. 28(7):1625-1642.
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2007.
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2010.
Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract
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2006.
Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
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2007.
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2012.
First report of potato cyst nematode Globodera rostochiensis, infecting potato (Solanum tuberosum) in Uganda. Plant Disease. 104:3082-3083.
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2020.