Publications list
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2021.
Recovery of biochemical functionality in polluted flood-plain soils: The role of microhabitat differentiation through revegetation and rehabilitation of the river dynamics. Soil Biology & Biochemistry. 40:2088-2097. Abstract
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2008.
Sexual selection and senescence: Male size-dimorphic ungulates evolved relatively smaller molars than females. American Naturalist. 170(3):370-380.
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2007.
Signaling in induced resistance. Advances in Virus Research. 76:57-121.
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2010.
Mapping of earthworm distribution for the British Isles and Eire highlights the under-recording of an ecologically important group. Biodiversity and Conservation. 21:475-485.
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2012.
How might we model an ecosystem? Ecological Modelling. 220:1935-1949.
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2009.
Asynchronous and synchronous updating in individual-based models. Ecological Modelling. 212:522-527. Abstract
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2008.
Modelling an ecosystem: the example of agro-ecosystems. Ecological Modelling. 222:1163-1173.
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2011.
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2012.
Little impact of over-winter parasitism on a free-ranging ungulate in the high Arctic. Functional Ecology. 32:1046-1056.
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2018.
Disease transmission in an extreme environment: Nematode parasites infect reindeer during the Arctic winter. International Journal for Parasitology. 42:789-795.
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2012.
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2013.
Securing the future of US agriculture: The case for investing in new entry sustainable farmers. Elementa - Science of the Anthropocene. 7:ArticleNo.17.
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2019.
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2007.
The contribution of farm-scale experiments to the understanding of soil processes and implications for ecosystem services. Guest Editors' introduction. European Journal of Soil Science. 67:359.
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2016.
Assessment of fluorescein-based fluorescent dyes for tracing Neotyphodium endophytes in planta. Mycologia. 105:221-229.
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2013.
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2011.
Integrating sediment biogeochemistry into 3D oceanic models: a study of benthic-pelagic coupling in the Black Sea. Ocean Modelling. 101:83-100.
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2016.
Integrating sediment biogeochemistry into 3D oceanic models: A study of benthic-pelagic coupling in the Black Sea. Ocean Modelling. 101:83-100.
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2016.
Cytokine expression in the placenta of pregnant cattle after inoculation with Neospora caninum. Veterinary Immunology and Immunopathology. 161:77-89.
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2014.
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2013.
Characterization of immune cell infiltration in the placentome of water buffaloes (Bubalus bubalis) infected with Neospora caninum during pregnancy. Journal of Comparative Pathology. 150:463-468.
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2014.
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2014.
Climate change effects on physiology and population processes of hosts and vectors that influence the spread of hemipteran-borne plant viruses. Global Change Biology. 15:1884-1894.
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2009.
Subcellular distribution of mutant movement proteins of Cucumber mosaic virus fused to green fluorescent proteins. Journal of General Virology. 86:1223-1228. Abstract
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2005.
Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract
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2006.
A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro. Journal of Molecular Biology. 376:932-937. Abstract
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2008.
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2020.
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2020.
Environmental incomes: Refined standard and extended accounts applied to cork oak open woodlands in Andalusia, Spain. Ecological Indicators. 117:ArticleNo.106551.
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2020.
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2020.
Bridging the gap between national and ecosystem accounting application in Andalusian Forests, Spain. Ecological Economics. 157:218-236.
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2019.
Scale-dependent effects of coppicing on the species pool of late successional beech forests in the central Apennines, Italy. Applied Vegetation Science. 19:474-485.
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2016.
Environmental and gentic factors associated with solanesol accumulation in potato leaves. Frontiers in Plant Science. 7
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2016.
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2015.
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2017.
Determination of zeolite-group mineral compositions by electron probe microanalysis. Mineralogical Magazine. 80:781-807.
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2016.
Genome-wide QTL and bulked transcriptomic analysis reveals new candidate genes for the control of tuber carotenoid content in potato (Solanum tuberosum L.). Theoretical and Applied Genetics. 127:1917-1933.
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2014.
Long term repeated burning in a wet sclerophyll forest reduces fungal and bacterial biomass and responses to carbon substrates. Soil Biology and Biochemistry. 40(9):2246-2252.
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2008.
Land use and a low-carbon society. Earth and Environmental Science Transactions of the Royal Society of Edinburgh, 103, 165-173..
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2012.
The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.
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2010.
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2012.
The impact of climate change on barley yield in the Mediterranean basin. European Journal of Agronomy. 106:1-11.
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In Press.
Spatial and temporal variability of spring barley yield and quality quantified by crop simulation model. Agronomy. 10:ArticleNo.393.
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2020.
Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research. 198:80-92.
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2016.
Assessing the robustness of vegetation indices to estimate wheat N in Mediterranean environments. Remote Sensing. 6:2827-2844.
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2014.
Using historical climate observations to understand future climate change crop yield impacts in the Southeastern US. Climatic Change. 134:311-326.
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2016.
A remote sensing-based approach to management zone delineation in small scale farming systems. Agronomy. 10:ArticleNo.1767.
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2020.
Implications of climate model biases and downscaling on crop model simulated climate change impacts. European Journal of Agronomy. 88:63-75.
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2017.
Rainfall and temperature impacts on barley (Hordeum vulgare L.) yield and malting quality in Scotland. Field Crop Research. 241:ArticleNo.107559.
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2019.
Predicting dates of head initiation and yields of broccoli crops grown throughout Scotland. European Journal of Agronomy. 116:ArticleNo.126055..
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2020.
The effects of projected climate and climate extremes on a winter and summer crop in the southeast. Agricultural and Forest Meteorology. 248:109-118.
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2018.
Metformin selectively targets redox control of complex I energy transduction. Redox Biology. 14:187-197.
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2018.
Environmental change impacts on the C- and N-cycle of European forests: a model comparison study. Biogeosciences. 10:1751-1773.
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2013.
Investigation of salicylate hepatic responses in comparison with chemical analogues of the drug. Biochimica et Biophysica Acta - Molecular Basis of Disease. 1862:1412-1422.
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2016.
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2008.
Metformin selectively targets redox control of complex I energy transduction. Redox Biology. 14:187-197.
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2018.
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2017.
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2014.
Seroprevalence of respiratory viral pathogens of indigenous calves in Western Kenya. Research in Veterinary Science. 108:120-124.
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2016.
Cold-dependent expression and alternative splicing of arabidopsis long non-coding RNAs. Frontiers in Plant Science. 10:ArticleNo.235.
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2019.
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2018.
Rapid and dynamic alternative splicing impacts the arabidopsis cold response transcriptome. Plant Cell. 30:1424-1444.
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2018.
Evolutionary relationships among barley and Arabidopsis core circadian clock and clock-associated genes. Journal of Molecular Evolution. 80:108-119.
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2015.
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2006.
Magnesium in crop production and food quality. Plant and Soil. 457:1-3.
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2020.
Zinc for better crop production and human health. Plant and Soil. 411:1-4.
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2017.
Message in a bubble: shuttling small RNAs and proteins between cells and interacting organisms using extracellular vesicles. Annual Review of Plant Biology. 72:497-524.
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2021.
Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract
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2006.
First report of brown rot and wilt of fennel caused by Phytophthora megasperma in Italy. Plant Disease. 90:-110. Abstract
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2006.
Root and foot rot of Lantana caused by Phytophthora cryptogea. Plant Disease. 89:909-909. Abstract
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2005.
Global change, parasite transmission and disease control: lessons from ecology. Philosophical Transactions of the Royal Society B, Biological Sciences. 372:ArticleNo.20160088.
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2017.
Interrogating pollution sources in a mangrove food web using multiple stable isotopes. Science of the Total Environment. 640-641:501-511.
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2018.
Early response mechanisms of perennial ryegrass (Lolium perenne) to phosphorous deficiency. Annals of Botany. 107:243-254.
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2011.
Caring for Cinderella : Perceptions and experiences of peatland restoration in Scotland. People and Nature. Published online..
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2021.
Trees, soils, and warthogs - distribution of services and disservices from reforestation areas in southern Ethiopia. Forest Policy and Economics. 84:112-119.
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2017.
Socio-economic changes, social capital and implications for climate change in a changing rural Nepal. GeoJournal. 81:169-184.
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2016.
Conservation in the face of ambivalent public perceptions - the case of peatlands as "the good, the bad and the ugly". Biological Conservation. 206:181-189.
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2017.
Socio-economic changes, social capital and implications for climate change in a changing rural Nepal. GeoJournal. Published online..
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2014.
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2005.
Potash fertilizer promotes incipient salinization in groundwater irrigated semi-arid agriculture. Scientific Reports. 10:ArticleNo.3691.
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2020.
Barriers to institutional learning and innovations in the forest sector in Europe: Markets, policies and stakeholders. Forest Policy and Economics. 13:124-131.
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2011.
DRASTIC-INSIGHTS: Querying information in a plant gene expression database. Nucleic Acids Research. 34:D712-D716. Abstract
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2006.
Alpine cushion plants inhibit the loss of phylogenetic diversity in severe environments. Ecology Letters. 16:478-486.
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2013.
A latent Gaussian model for compositional data with zeros. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:505-520. Abstract
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2008.
Mineral sources of aqua regia extractable base cations in Scottish soils interpreted from Cubist models trained with quantitative mineralogy data. Chemical Geology. 551:ArticleNo.119773.
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2020.
Extreme value analysis of decadal variations in storm surge elevations. Journal of Marine Systems. 67:189-200. Abstract
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2007.
Pre-treatment of soil X-ray powder diffraction data for cluster analysis. Geoderma. 337:413-424.
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2019.
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2018.
powdR: An R package for quantitative mineralogy using full pattern summation of X-ray powder diffraction data. Computers and Geosciences. 147:ArticleNo.104662.
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2021.
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2021.
Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
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2009.
Gypsum and hydrohalite dynamics in sea ice brines. Geochimica et Cosmochimica Acta.
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2017.
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2020.
Adapting scenarios for climate adaptation: Practitioners’ perspectives on a popular planning method. Environmental Science and Policy. 104:13-19.
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2020.
Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley. The Plant Journal. 99:1172-1191.
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2019.
Spatial sampling of weather data for regional crop yield simulations. Agricultural and Forest Meteorology. 220:101-115.
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2016.
Social risk amplification as an attribution: the case of zoonotic disease outbreaks. Journal of Risk Research. 15:1049-1074.
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2012.
Research priorities for harnessing plant microbiomes in sustainable agriculture. PLoS Biology. 15:ArticeleNo.e2001793.
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2017.
Exploring farmers' cultural resistence to voluntary agri-environmental schemes. Sociologia Ruralis. 48(1):16-37.
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2008.
Injecting social psychology theory into conceptualisations of agricultural agency: towards a post-productionist farmer self -identity. Journal of Rural Studies. 22(1):95-115.
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2006.
An alternative to farmer age as an indicator of life-cycle stage: The case for a farm family age index. Journal of Rural Studies. 22(4):485-492.
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2006.
Assessing the vulnerability of the marine bird community in the western North Sea to climate change and other anthropogenic impacts. Marine Ecology Progress Series. 507:277-295.
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2014.
Demographic consequences of increased winter births in a large aseasonally breeding mammal (Bos taurus) in response to climate change. Journal of Animal Ecology. 80:1134-1144.
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2011.
Phenological trends and trophic mismatch across multiple levels of a North Sea pelagic food web. International Journal of Plant Genomics. 454:119-133.
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2012.
Endoscopy as a novel method for assessing endoparasite burdens in free-ranging European shags (Phalacrocorax aristotelis). Methods in Ecology and Evolution. 4:207-216.
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2013.
Vaccination of pigs with the S48 strain of Toxoplasma gondii - safer meat for human consumption. Veterinary Research. 46
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2015.
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2014.
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2017.
Oceanic embodiments: living ENSO events in coastal TImor-Leste. Political Geography. 70:102-116.
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2019.
Assessing climate change causes, risks and opportunities in forestry. Outlook on Agriculture. 39(4):263-268.
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2010.
Psoroptes ovis-Early Immunoreactive Protein (Pso-EIP-1) a novel diagnostic antigen for sheep scab. Parasite Immunology, Article No. e12788. Published online..
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2020.
A survey of the trichostrongylid nematode species present on UK sheep farms and associated anthelmintic control practices. Veterinary Parasitology. 189:299-307.
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2012.
A recombinant subunit vaccine for the control of ovine psoroptic mange (sheep scab). Veterinary Research. 47
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2016.
Biomineralization of fungal hyphae with calcite (CaCO3) and calcium oxalate mono- and dihydrate in carboniferous limestone microcosms. Geomicrobiology Journal. 23(8):599-611.
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2006.
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2014.
A rapid diagnostic for detection of Aphelenchoides besseyi and A. fujianensis based on real-time PCR. Plant Disease. 102:519-526.
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2018.
Mechanisms of root reinforcement in soils: an experimental methodology using four-dimensional X-ray computed tomography and digital volume correlation. Proceedings of the Royal Society A - Mathematicla Physical and Engineering Science. 476:ArticleNo.20190838.
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2020.
Genomic variations associated with attenuation in Mycobacterium avium subsp paratuberculosis vaccine strains. BMC Microbiology, 13, Article No.11..
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2013.
Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility. Nature Communications. 8:ArticleNo.936.
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2017.
Looking beyond superficial knowledge gaps: Understanding public representations of biological diversity. International Journal Biodiversity Science Management. 4(2):65-80.
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2008.
From urban gardening to planetary stewardship: human-nature relationships and their implications for environmental management. Journal of Environmental Planning and Management. 61:747-755.
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2018.
Understanding people's ideas on natural resource management: research on social representations of nature. Society and Natural Resources.. 25:1167-1181.
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2012.
Metrics to assess how longitudinal channel network connectivity and in-stream Atlantic salmon habitats are impacted by hydropower regulation. Hydrological Processes. 31:2132-2142.
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2017.
Integration of juvenile habitat quality and river connectivity models to understand and prioritise the management of barriers for Atlantic salmon populations across spatial scales. Science of the Total Environment. 655:557-566.
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2019.
How should regional biodiversity be monitored? Environmental and Ecological Statistics. 19:601-626.
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2012.
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2011.
Methods to investigate the geochemistry of groundwaters with values for nitrogen compounds below the detection limit. Journal of Geochemical Exploration. 141:78-88.
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2014.
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2013.
Genomic resources and tools for gene function analysis in potato. International Journal of Plant Genomics. 2008:-216513.
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2008.
Levels of intra-specific AFLP diversity in tuber-bearing potato species with different breeding systems and ploidy Llevels. Frontiers in Genetics. 8:ArticleNo.119.
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2017.
The effects of soil horizons and faunal excrement on bacterial distribution in an upland grassland soil. FEMS Microbiology Ecology. 52:139-144. Abstract
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2005.
The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
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2010.
The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract
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2008.
Prospects for plant defence activatiors and biocontrol in IPM - concpets and lessons learnt so far. Crop Protection. 97:128-134.
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2017.
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2014.
Changes in climate variability with reference to land quality and agriculture in Scotland. International Journal of Biometeorology. 59:717-732.
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2015.
Is green manure from riparian buffer strip species an effective nutrient source for crops? Journal of Environmental Quality. 48:385-393.
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2019.
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2016.
Influence of seasonal weather and climate variability on crop yields in Scotland. International Journal of Biometeorology. 57:605-614.
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2013.
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2012.
New challenges for old Commons: The role of historical common land in contemporary rural spaces. Scottish Geographical Journal. 122:109-129.
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2006.
Participatory scenario planning for developing innovation in community adaptation responses: three contrasting examples from Latin America. Regional Environmental Change. Published online.
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2016.
The role of landscape in regulating (Ir) responsible conduct: moral geographies of the ‘proper control’ of dogs. Landscape Research. 40:39-56.
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2015.
The haptic pleasures of ground-feel: The role of textured terrain in motivating regular exercise. Health and Place. 46:307-314.
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2017.
Scenario analysis for regional decision-making on sustainable multifunctional land uses. Regional Environmental Change. 14:1357-1371.
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2014.
Identifying robust response options to manage environmental change using an Ecosystem Approach II: a stress-testing case study for the UK. Environmental Science and Policy. 52:74-88.
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2015.
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2019.
Mechanisms underlying the anti-proliferative effects of berry components in in vitro models of colon cancer. Current Pharmaceutical Biotechnology. 13:200-209.
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2012.
Landscape models and explanation in landscape ecology- A space for generative landscape science? Professional Geographer. 58(4):369-382.
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2006.
An agent-based modelling approach to evaluate factors influencing bioenergy crop adoption in north-east Scotland. Global Change Biology Bioenergy. 8:226-244.
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2016.
Lost in translation: pitfalls in deciphering plant alternative splicing transcripts. The Plant Cell. 27:2083-2087.
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2015.
Arabidopsis nucleolar protein database (AtNoPDB). Nucleic Acids Research. 33:D633-D636.
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2005.
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2012.
Using a head-mounted video camera to understand social worlds and experiences. Sociological Research Online. 13(6)
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2008.
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2014.
The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.
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2008.
Understanding the materialities and moralities of property: reworking collective claims to land. Transactions of the Institute of British Geographers. 32(4):507-522.
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2007.
Is green manure from riparian buffer strip species an effective nutrient source for crops? Journal of Environmental Quality. 48:385-393.
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2019.
Is bere barley specifically adapted to fertilisation with seaweed as a nutrient source? Nutrient Cycling in Agroecosystems. 118:149-163.
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2020.
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2014.
Are people who participate in cultural activities more satisfied with life? Social Indicators Research. 122:135-146.
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2015.
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2013.
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2012.
In vitro and in vivo models of colorectal cancer: antigenotoxic activity of berries. Journal of Agricultural and Food Chemistry. 62:3852-3866.
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2014.
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2008.
Intronic noncoding RNAs and splicing. Trends in Plant Science. 13:335-342. Abstract
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2008.
Reconciling moral and legal collective entitlement: Lessons for community-based land reform. Land Use Policy. 24(4):633-643.
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2007.
Variable impacts of reduced and zero tillage on soil carbon storage across 4-10 years of UK field experiments. Journal of Soils and Sediments..
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2020.
Leave only footprints? How traces of movement shape the appropriation of space Cultural Geographies.
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2014.
The Rhizosheath - A potential trait for future agricultural sustainability occurs in orders throughout the angiosperms. Plant and Soil. Published online..
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2017.
The effects of host age on follicular dendritic cell status dramatically impair scrapie agent neuroinvasion in aged mice. Journal of Immunology. 183:5199-5207.
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2009.
A working typology of response options to manage environmental change and their scope for complementarity using an ecosystem approach. Environmental Science and Policy. 52:61-73.
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2015.
Participatory scenario planning for developing innovation in community adaptation responses: three contrasting examples from Latin America. Regional Environmental Change. 16:1685-1700.
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2016.
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2013.
Sharing public space across difference: attunement and the contested burdens of choreographing encounter. Social and Cultural Geography. 13:801-820.
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2012.
Mapping and classification of peatland on the Isle of Lewis using Landsat ETM+. Scottish Geographcial Journal. 123(3):173-192.
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2008.
Photosynthetic potential of planets in 3:2 spin-orbit resonances. International Journal of Astrobiology.
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2014.
Variable impacts of reduced and zero tillage on soil carbon storage across 4-10 years of UK field experiments. Journal of Soils and Sediments. 21:890-904.
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2021.
Evidence for litter differences in play behaviour in pre-weaned pigs. Applied Animal Behaviour Science. 172:17-25.
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2015.
The Rhizosheath - a potential trait for future agricultural sustainability occurs in orders throughout the angiosperms. Plant and Soil. 418:115-128.
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2017.
High quality reference transcript datasets hold the key to transcript-specific RNA-seq analysis in plants. New Phytologist. 213:525-530.
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2017.
Climate change, drought risk and land capability for agriculture: implications for land-use in Scotland. Regional Environmental Change. 11:503-518.
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2011.
Improving value transfer through socio-economic adjustments in a multicountry choice experiment of water conservation alternatives. Australian Journal of Agricultural and Resource Economics. 59:458-478.
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2015.
Intact salicylic acid signalling is required for potato defence against the necrotrophic fungus Alternaria solani. Plant Molecular Biology. 104:1-19.
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2020.
Modeling self-censoring of polluter pays protest votes in stated preference research to support resource damage estimations in environmental liability. Resource and Energy Economics. 34:151-166.
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2012.
Limitations of field soil microbial biomass measures. Soil Biology and Biochemistry. 39(10):2693-2695.
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2007.
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2019.
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2013.
Invertebrate biodiversity in maize following withdrawal of triazine herbicides. Proceedings of the Royal Society of London, Series B. 272:1497-1502. Abstract
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2005.
How national context, project design, and local community characteristics influence success in community-based conservation projects. Proceedings of the National Academy of Sciences (PNAS). 109:2165-21270.
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2012.
Improving intercropping: a synthesis of research in agronomy, plant physiology and ecology. New Phytologist. 206:107-117.
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2015.
Association of vegetation and soil mite assemblages with isolated Scots pine trees on a Scottish wet heath. Landscape Ecology. 23(7):861-871.
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2008.
Climate change and biodiversity: impacts and policy development challenges - a European case study. International Journal of Biodiversity Science and Management. 3:12-30.
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2007.
Facilitation in plant communities: the past, the present and the future. Journal of Ecology. 96:18-34.
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2008.
Modelling species' range shifts in a changing climate: The impacts of biotic interactions, dispersal distance and the rate of climate change. Journal of Theoretical Biology. 245(1):59-65.
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2007.
Tiny niches and translocations: the challenge of identifying suitable recipient sites for small and immobile species. Journal of Applied Ecology. 55:621-630.
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2018.
The concept and measurement of importance: a comment on Rees et al. 2012. Journal of Ecology. 101:1369-13789.
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2013.
Importance: an overlooked concept in plant interaction research. Journal of Ecology. 96(4):703-708.
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2008.
Plant-plant interactions and environmental change. New Phytologist. 171:273-275.
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2006.