Publications list
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2010.
A graphical method for dating chicks using bivariate body measurements. Journal of Agricultural, Biological and Environmental Statistics. 14:443-451.
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2009.
Three-way interactions between plants, microbes and insects. Functional Ecology. 27:567-573.
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2013.
Detection and differentiation between potato (Solanum tuberosum) diseases using calibration models trained with non-imaging spectrometry data. Computers and Electronics in Agriculture. 167:ArticleNo.105056..
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2019.
Highlights of the mini-symposium on extracellular vesicles in inter-organismal communication, held in Munich, Germany, August 2018. Journal of Extracellular Vesicles. 8:ArticleNo.1590116.
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2019.
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2014.
Applying plant genomics to crop improvement. Genome Biology. 8:302-302. Abstract
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2007.
A phylogenetic study of Boletus section Boletus in Europe. Persoonia. 20:1-7.
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2008.
Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health. 10:-423.
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2010.
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2013.
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2015.
The physiological basis of genotypic differences in nitrogen use efficiency in oilseed rape (Brassica napus L.). Field Crops Research. 119:365-373.
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2010.
Functional traits and local environment predict vegetation responses to disturbance: a pan-European multi-site-experiment. Journal of Ecology. 99:777-787.
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2011.
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2012.
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2017.
Calibrating and testing APSIM for wheat-faba bean pure cultures and intercrops across Europe. Field Crops Research. 264:ArticleNo.108088.
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2021.
The Tarland Catchment Initiative and its effect on stream water quality and macroinvertebrate indices. Journal of Environmental Quality. 41:314-321.
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2012.
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2009.
Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology. 8:333-341. Abstract
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2007.
The transfer of radiocaesium to ewes through a breeding cycle - an illustration of the pitfalls of the transfer coefficient. Journal of Environmental Radioactivity. 98(1-2):24-35.
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2007.
The transfer of radionuclides from saltmarsh vegetation to sheep tissues and milk. Journal of Environmental Radioactivity. 98(1-2):36-49.
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2007.
Phenology and climate change in Africa and the decline of Afro-Palearctic migratory bird populations. Remote Sensing in Ecology amd Conservation. 5:55-69.
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2019.
F-actin dynamics in Neurospora crassa. Eukaryotic Cell. 9:547-557.
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2010.
The effects of arbuscular mycorrhizal fungal colonisation on nutrient status, growth, productivity, and canker resistance of apple (Malus pumila). Frontiers in Microbiology. 9:ArticleNo.1461.
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2018.
Detection of lactobacillic acid in low erucic rapeseed oil - A note of caution when quantifying cyclic fatty acid monomers in vegetable oils. Chemistry and Physics of Lipids. 163:698-702.
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2010.
Assessment of the draft hydrological basin plan of the Guadalquivir River Basin (Spain). Water Resources Development.. 28:43-55.
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2012.
A cost effectiveness analysis of water saving measures for the Water Framework Directive: the case of the Guadalquivir river basin in Southern Spain. Water Resources Management. 25:623-640.
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2011.
Can faecal markers detect a short term reduction in forage intake by cattle? Animal Feed Science and Technology. 194:44-57.
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2014.
Foraging mechanics and their outcomes for cattle grazing reproductive tropical swards. Applied Animal Behaviour Science. 113(1-3):15-31.
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2008.
Defoliation patterns and their implications for the management of vegetative tropical pastures to control intake and diet quality by cattle. Grass and Forage Science. 71:424-436.
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2016.
Review of the annual phosphorus loss estimator tool-a new model for estimating phosphorus losses at the field scale. Soil Use and Management. 30:337-341.
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2014.
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2016.
Potentials and pitfalls in the analysis of bipartite networks to understand plant-microbe interactions in changing environments. Functional Ecology.. 33:107-117.
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2019.
Response to soil biota by native, introduced non-pest, and pest grass species: is responsiveness a mechanism for invasion? Biological Invasions. 15:1343-1353.
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2013.
Pushing boundaries in above-belowground interactions. Functional Ecology. 26:305-306.
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2012.
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2013.
Multiple mechanisms enable invasive species to suppress native species. Amercian Journal of Botany. 98:1086-1094.
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2011.
Plant lignin content altered by soil microbial community. New Phytologist. 206:166-174.
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2015.
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2013.
Beyond the black box: promoting mathematical collaborations for elucidating interactions in soil ecology. Ecosphere. 10:ArticleNo.e02799.
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2019.
Can plant-microbe-insect interactions enhance or inhibit the spread of invasive species? Functional Ecology. 27:661-671.
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2013.
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2014.
Using a general index approach to analyse camera-trap abundance indices. Journal of Wildlife Management. 75:1222-1227.
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2011.
Testing target-specific bait delivery for controlling feral pigs in a tropical rainforest. Ecological Management and Restoration. 12:226-229.
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2011.
Target-specificity of feral pig baits under different conditions in a tropical rainforest. Wildlife Research. 38:370-378.
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2011.
Root hairs aid soil penetration by anchoring the root surface to pore walls. Journal of Experimental Botany. 67:1071-1078.
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2016.
Preface: Future roots of productivity. Journal of Experimental Botany. 64:1179.
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2013.
Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits. Journal of Experimental Botany. 62:59-68.
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2011.
Root elongation is restricted by axial but not by radial pressures: so what happens in field soil? Plant and Soil. 360:15-18.
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2012.
Root responses to soil physical conditions; growth dynamics from field to cell. Journal of Experimental Botany. 57:437-447. Abstract
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2006.
PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract
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2010.
Water dynamics of the root zone: Rhizosphere biophysics and its control on soil hydrology. Vadose Zone Journal. 11
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2012.
Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. ISME Journal. 8:1336-1345.
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2013.
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2012.
Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology. 179:209-215.
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2011.
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2021.
National-scale geodata describe widespread accelerated soil erosion. Geoderma. 371:ArticleNo.114378.
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2020.
Contrasting impacts of afforestation on nitrous oxide and methane emissions. Agricultural and Forest Meteorology. 198:82-93.
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2014.
Method speciation in surface sediments of the Vigo Ria (NW Iberian Peninsula). Scientia Marina. 72:119-126.
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2008.
Chemical forms and distribution of heavy metals in core sediments from the Gdansk Basin, Baltic Sea. Polish Journal of Environmental Studies. 16:505-515.
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2007.
Phytaspase-mediated precursor processing and maturation of the wound hormone systemin. New Phytologist. 218:1167-1178.
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2018.
Validation of biophysical models: issues and methodologies. A review. Agronomy for Sustainable Development.. 30(1):109-130.
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2010.
Validation of biophysical models: issues and methodologies: a review. In: Sustainable Farming Systems, Springer Sciencce. 30:109-130.
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2010.
Deliberative processes for comprehensive evaluation of agroecological models. A review. Agronomy for Sustainable Development. 35:589-605.
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2015.
Foetal hypothalamic and pituitary expression of GnRH and galanin systems is disturbed by exposure to sewage sludge chemicals via maternal ingestion. Journal of Neuroendocrinology. 22(6):527-533.
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2010.
Foetal and post-natal exposure of sheep to sewage sludge chemicals disrupts sperm production in adulthood in a subset of animals. International Journal of Andrology. 35:317-329.
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2012.
Exposure to a complex cocktail of environmental endocrine disrupting compounds disturbs the KiSS-1/GPR54 system in ovine hypothalamus and pituitary gland. Environmental Health Perspectives. 117(10):1556-1562.
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2009.
Effects of exposure to environmental chemicals during pregnancy on the development of the male and female reproductive axes. Reproduction in Domestic Animals. 47:15-22.
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2012.
Exposure to chemical cocktails before or after conception - the effect of timing on ovarian function. Molecular and Cellular Endocrinology. 376:156-172.
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2013.
Digging deeper: Gardening as a way to develop non-human relationships through connection with nature. European Journal of Ecopsychology. 7:1-18.
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2021.
UK land-use change and its impact on SOC: 1925-2007. Global Biogeochemical Cycles. 25
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2011.
Rates of production and utilization of lactate by microbial communities from the human colon. FEMS Microbiology Ecology. 77:107-119.
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2011.
Impact of pH on lactate formation and utilization by human fecal microbial communities. Applied and Environmental Microbiology. 73:6526-6533. Abstract
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2007.
Metabolomics and food processing: from semolina to pasta. Journal of Agricultural and Food Chemistry. 59:9366-9377.
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2011.
Study of the effect of presence or absence of protozoa on rumen fermentation and microbial protein contribution to the chyme. Journal of Animal Science. 89:4163-4174.
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2011.
Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.
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2010.
Competitive sorption and diffusion of chromate and sulphate in a flow system with goethite in gel beads. Journal of Contaminant Hydrology. 86(3-4):262-278.
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2006.
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data. 4:ArticleNo.170044.
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2017.
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data. 4:ArticleNo.170044.
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2017.
Soil organic carbon sequestration and mitigation potential in a rice cropland in Bangladesh - a modelling approach. Field Crops Research. 226:16-27.
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2018.
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2019.
Simulating soil carbon sequestration from long term fertilizer and manure additions under continuous wheat using the DailyDayCent model. Nutrient Cycling in Agroecosystems. 109:291-302.
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2017.
Modelling the persistence of volunteer oilseed rape (Brassica napus). Ecological Modelling. 198:195-207. Abstract
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2006.
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2012.
Heterogeneity in the distribution of genetically modified and conventional oilseed rape within fields and seed lots. Transgenic Research. 17:805-816. Abstract
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2008.
A functional overview of conservation biological control. Crop Protection. 97:145-158.
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2017.
Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots. Transgenic Research. 16:51-63. Abstract
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2007.
Assessing the influence of compost and biochar amendments on the mobility and toxicity of metals and arsenic in a naturally contaminated mine soil. Environmental Pollution. 186:195-202.
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2014.
Carbon storage and fluxes in existing and newly created urban soils. Journal of Environmental Management. 104:158-165.
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2012.
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2011.
The impacts of applying metal(loid) enriched wood ash to soils on the grtowth and elemental accumulation of rice. Exposure and Health. 11:311-324.
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2019.
Environmental risks and futures. Procedia Environmental Sciences, 21, 1-2..
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2014.
Respiration (CO2 flux) from urban and pen-urban soils amended with green waste compost. Geoderma. 223:68-72.
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2014.
A review of biochars' potential role in the remediation, revegetation and restoration of contaminated soils. Environmental Pollution. 159:3269-3282.
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2011.
Biochar addition to an arsenic contaminated soil increases arsenic concentrations in the pore water but reduces uptake to tomato plants (Solanum lycopersicum L.). Science of the Total Environment. 454-455:598-603.
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2013.
The immobilisation and retention of soluble arsenic, cadmium and zinc by biochar. Environmental Pollution. 159:474-480.
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2011.
Sexual segregation when foraging in an extremely social killer whale population. Behavioral Ecology and Sociobiology. 70:189-198.
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2016.
Critical issues in trace gas biogeochemistry and global change. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1629-1642. Abstract
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2007.
Process-based principles for restoring river ecosystems. BioScience. 60(3):209-222.
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2010.
Soil and tree biomass carbon sequestration potential of silvopastoral and woodland pasture systems in North East Scotland. Agroforestry Systems. 90:371-383.
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2016.
The role of quantitative cross-case analysis in understanding tropical smallholder farmers’ adaptive capacity to climate shocks. Environmental Research Letters. 14:ArticleNo.125013..
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2019.
Aorta protein networks in marginal and acute zinc deficiency. Proteomics. 8:2126-2135. Abstract
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2008.
Suboptimal dietary zinc intake promotes vascular inflammation and atherogenesis in a mouse model of atherosclerosis. Molecular Nutrition and Food Research. 56:1097-1105.
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2012.
Ginger phytochemicals mitigate the obesogenic effects of a high-fat diet in mice: a proteomic and biomarker network analysis. Molecular Nutrition and Food Research. 55:S203-S213.
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2011.
Calcification and ocean acidification: new insights from the coccolithophore Emiliania huxleyi. New Phytologist. 199:1-3.
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2013.
Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton. New Phytologist. 181:295-309.
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2009.
Regulation of inorganic carbon acquisition by phosphorus limitation in the green alga Chorella emersonii. Canadian Journal of Botany - Review Canadienne de Botanique. 83:859-864. Abstract
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2005.
Cyanobacteria vs green algae: which group has the edge? Journal of Experimental Botany. 68:3697-3699.
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2017.
Climate change may account for the decline in British ring ouzels Turdus torquatus. Journal of Animal Ecology. 75(3):826-835.
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2006.
Managing visitor access to seabird colonies: a spatial simulation and empirical observations. Ibis (Suppl.1.). 149:102-111.
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2007.
Protected area networks and savannah bird biodiversity in the face of climate change and land degradation. Ecology Letters. 16:1061-1068.
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2013.
Regression analysis of spatial data. Ecology Letters. 13:246-264.
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2010.
Incorporating uncertainty in predictive species distribution modelling. Philosophical Transactions of the Royal Society B. 367:247-258.
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2012.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
European bird distributions still show few climate associations. Proceedings of the National Academy of Sciences, USA. 106(16):E41-E43.
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2009.
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2006.
Opening the climate envelope reveals no macroscale associations with climate in European birds. Proceedings of the National Academy of Sciences, USA. 105:14908-14912.
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2008.
A new statistical framework for the quantification of covariate associations with species distributions. Methods in Ecology and Evolution. 5:421-432.
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2014.
Red herrings remain in geographical ecology: a reply to Hawkins et al. (2007). Ecography. 30:845-847.
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2007.
Specialized membrane domains of plasmodesmata, plant intercellular nanopores. Frontiers in Plant Science. 5
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2014.
Comparative visualization of genetic and physical maps with Strudel. Bioinformatics. 27:1307-1308.
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2011.
Development and evaluation of a barley 50k iSelect SNP array. Frontiers in Plant Science. 8:ArticleNo.1792.
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2017.
Investigating the behavioural and physiological indicators of neonatal survival in pigs. Theriogenology. 69:773-783. Abstract
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2008.
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2013.
The weaker sex? The propensity for male-biased piglet mortality PLoS ONE. 7:e30318.
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2012.
Translocation tactics: a framework to support the IUCN guidelines for wildlife translocations and improve the quality of applied methods. Journal of Applied Ecology. 52:1598-1607.
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2015.
RNA- and DNA-based profiling of soil fungal communities in a native Australian eucalypt forest and adjacent Pinus elliotti plantation. Soil Biology and Biochemistry. 39(12):3108-3114.
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2007.
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2016.
Variable rate nitrogen fertilizer response in wheat using remote sensing. Precision Agriculture. 17:168-182.
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2016.
Environmental and economic benefits of variable rate nitrogen fertilization in a nitrate vulnerable zone. Science of the Total Environment. 545:227-235.
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2016.
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2009.
Eight principles of integrated pest management. Agronomy for Sustainable Development. 35:1199-1215.
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2015.
Evolutionary trait-based approaches for predicting future global impacts of plant pathogens in the genus Phytophthora. Journal of Applied Ecology. 58:718-730.
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2021.
The slip surface in the D zone of the barton clay. Quarterly Journal of Engineering Geology and Hydrogeology. 39(4):357-370.
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2006.
Call for transparency of COVID-19 models. Science. 368:482-483.
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2020.
Evolutionary temperature compensation of carbon fixation in marine phytoplankton. Ecology Letters. 23:722-733.
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2020.
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2012.
The development of immune responses in Balb/c mice following inoculation with attenuated or virulent Neospora caninum tachyzoites. Parasite Immunology. 31:392-401.
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2009.
Identification and evaluation of vaccine candidate antigens from the poultry red mite (Dermanyssus gallinae). International Journal for Parasitology, 45, 819-830..
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2015.
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2013.
Selection and characterisation of monepantel resistance in Teladorsagia circumcincta isolates. International Journal for Parasitology - Drugs and Drug Resistance. 5:69-76.
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2015.
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2012.
Operational considerations for hot-washing in potato crisp manufacture. Food and Bioproducts Processing. 124:387-396.
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2020.
A critical review of current methods in earthworm ecology: From individuals to populations (Review). European Journal of Soil Biology. 46:67-73.
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2010.
Within year variation in the vegetative spread of five temperate grasses. Journal of Vegetation Science. 17(3):315-322.
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2006.
The direct response of the external mycelium of arbuscular mycorrhizal fungi to temperature and the implications for nutrient transfer. Soil Biology and Biochemistry. 78:109-117.
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2014.
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2011.
Framework for estimating indirect costs in animal health using time series analysis. Frontiers in Veterinary Science. 6:ArticleNo.190.
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2019.
Is there an impact of climate change on soil carbon contents in England and Wales? European Journal of Soil Science. 66:451-462.
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2015.
Rheological stabilisation of wet soils by model root and fungal exudates depends on clay mineralogy. European Journal of Soil Science. 60:525-538. Abstract
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2009.
Earthworms bring compacted and loose soils to a similar mechanical state. Soil Biology & Biochemistry. 41:656-658. Abstract
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2009.
Quantitative image analysis of earthworm-mediated soil displacement. Biology and Fertility of Soils. 45:821-828.
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2009.
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2016.
Is forest regeneration good for biodiversity? Exploring the social dimensions of an apparently ecological debate Environmental Science and Policy. 120:63-72.
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2021.
What are the impacts of social innovation? A synthetic review and case study of community forestry in the Scottish Highlands Sustainability. 13:ArticleNo.4359.
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2021.
Stakeholders engagement platform to identify sustainable pathways for the development of multi-functional agroforestry in Guadeloupe, French West Indies. Agroforestry Systems. Published online..
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2021.
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2008.
Comparison of genome sequence of PVY isolates with biological properties. American Journal of Potato Research. 86:227-238.
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2009.
Development of a national-scale real-time Twitter data mining pipeline for social geodata on the potential impacts of flooding on communities. Environmental Modelling and Software. 115:213-227.
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2019.
Stakeholders' views on natural flood management: implications for the nature-based solutions paradigm shift? Environmental Science and Policy. 116:91-98.
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2021.
Long noncoding RNA modulates alternative splicing regulators in Arabidopsis. Developmental Cell. 30:166-176.
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2014.
Rhizobium altiplani sp. nov. isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in Central Brazil. International Journal of Systematic and Evolutionary Microbiology. 66:1-7.
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2016.
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2019.
Stimulation of homologous recombination in plants expressing heterologous recombinases. BMC Plant Biology. 20:ArticleNo.336.
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2020.
Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco. Plant Cell. 23:4492-4506.
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2011.
Downregulation of barley Regulator of Telomere Elongation Helicase 1 alters the distribution of meiotic crossovers. Frontiers in plant science. 12:ArticleNo.745070.
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2021.
Barley anther and meiocyte transcriptome dynamics in meiotic prophase I. Frontiers in Plant Science. 11:ArticleNo.619404.
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2021.
The synaptonemal complex protein ZYP1 is required for imposition of meiotic crossovers in barley. The Plant Cell. 26:729-740.
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2014.
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2016.
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2014.
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2017.
Application of wedge fracture test for texture analysis in boiled Sweetpotato (Ipomoea batatas). African Journal of Food Science. 15:145-151.
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2021.
Lack of evidence for an association between MHC diversity and the development of bovine neonatal pancytopenia in Holstein dairy cattle. Veterinary Immunology and Immunopathology. 141:128-132.
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2011.
Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.
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2010.
Seasonal nitrous oxide emissions in field soils under soil management of reduced tillage, compost application or organic farming. Agriculture, Ecosystems and Environment. 189:17-180.
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2014.
Visual soil evaluation: a summary of some applications and potential developments for agriculture. Soil and Tillage Research. 173:114-124.
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2017.
Exploitative competition alters bee foraging and flower choice. Behavioral Ecology and Sociobiology. 69:1731-1738.
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2015.
Integrated policy analysis to identify transformation paths to more-sustainable legume-based food and feed value-chains in Europe. Agroecology and Sustainable Food Systems. Published online..
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2021.
Assessing the willingness to pay for reliable domestic water supply via catchment management: results from a contingent valuation survey in Nairobi City, Kenya. Journal of Environmental Planning and Management. 56:1511-1531.
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2013.
Cost-benefit analysis of soil and water conservation measures: The case of exclosures in northern Ethiopia. Forest Policy and Economics. 15:27-36.
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2012.
Integrated cost-effectiveness analysis of agri-environmental measures for water quality. Journal of Environmental Management. 161:163-172.
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2015.
A conjoint analysis of landholder preferences for reward-based land-management contracts in Kapingazi watershed, Eastern Mount Kenya. Journal of Environmental Management. 92:2634-2646.
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2011.
Integrating economic and biophysical data in assessing cost-effectiveness of buffer strip placement. Journal of Environmental Quality. 41:380-388.
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2012.
A review on cost-effectiveness analysis of agri-environmental measures related to the EU WFD: Key issues, methods, and applications. Ecological Economics. 70:1021-1031.
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2011.
Assessing the sustainability of forest management: an application of multi-criteria decision analysis to community forests in northern Ethiopia. Journal of Environmental Management. 91:1294-1304.
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2010.
How effective are agricultural management measures at improving water quality? Intersezioni - Online magazine of the Agronomist Professional Association of Milano, 40, 18 December 2013..
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2013.
Degradation of metalaxyl M in contrasting soils is influenced more by differences in physicochemical characteristics than in microbial community composition after reinoculation of sterilised soils. Soil Biology and Biochemistry.. 42(7):1123-1131.
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2010.
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2015.
The low recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression. The Plant Journal. 79:981-992.
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2014.
GTP-cyclohydrolase and development in Teladorsagia circumcinta and Dictyocaulus viviparus (Nematoda:Strongylida). Experimental Parasitology. 128:309-317.
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2011.
Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies. Soil Biology and Biochemistry. 41(11):2292-2298.
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2009.
Cost-effectiveness analysis of policy instruments for greenhouse gas emission mitigation in the agricultural sector. Journal of Environmental Management. 112:33-44.
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2012.
Emission trading in agriculture: a study of design options using an agent-based approach. Mitigation and Adaptation Strategies for Global Change.. 14(8):755-776.
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2009.
Estimating carbon price from a closed emission trading scheme in the agricultural sector. Journal of Land Use Science. 6:1-18.
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2012.
High-throughput metabolic screening of microalgae genetic variation in response to nutrient limitation. Metabolomics. 12:ArticleNo.9.
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2016.
Kodoja: A workflow for virus detection in plants using k-mer analysis of RNA-sequencing data. Journal of General Virology. 100:533-542.
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2019.
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2008.
Clay mineral source tracing and characterisation of Burdekin River (NE Australia) and flood plume fine sediment. Journal of Soils and Sediments. 16:687-706.
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2016.
Stability of small ubiquitin-like modifier (SUMO) proteases OVERLY TOLERANT TO SALT1 and-2 modulates salicylic acid signalling and SUMO1/2 conjugation in Arabidopsis thaliana. Journal of Experimental Botany. 67:353-363.
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2016.