Publications list
Impact analysis of climate data aggregation at different spatial scales on simulated net primary productivity for croplands. European Journal of Agronomy. 88:41-52.
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2017.
Impact analysis of climate data aggregation at different spatial scales on simulated net primary productivity for croplands. European Journal of Agronomy. 88:41-52.
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2017.
The impact of population growth and climate change on food security in Africa: looking ahead to 2050. International Journal of Agricultural Sustainability. 15:124-135.
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2017.
Impact of predicted precipitation scenarios on multitrophic interactions. Functional Ecology. 31:1647-1658.
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2017.
The implication of input data aggregation on up-scaling soil organic carbon changes. Environmental Modelling and Software. 96:361-377.
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2017.
Implications of climate model biases and downscaling on crop model simulated climate change impacts. European Journal of Agronomy. 88:63-75.
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2017.
The importance of illitic minerals in shale instability and in unconventional hydrocarbon reservoirs. Geological Society, London, Special Publications. 454
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2017.
The importance of illitic minerals in shale instability and in unconventional hydrocarbon reservoirs. In: Rutter, E.H., Mecklenburgh, J. & Taylor, K.G. (eds.). Geomechanical and Peterophysical Propoerties of Mudrocks. Special Publictaions. 454:253-269.
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2017.
In Synechococcus sp competition for energy between assimilation and acquisition of C and those of N only occurs when growth is light limited. Journal of Experimental Botany. 68:3829-3839.
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2017.
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2017.
Inorganic carbon physiology underpins macroalgal responses to elevated CO2. Scientific Reports. 7:ArticleNo.46297.
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2017.
Intraspecific chemical communication in microalgae. New Phytologist. 215:516-530.
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2017.
It is elemental: soil nutrient stoichiometry drives bacterial diversity. Environmental Microbiology. 19:1176-1188.
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2017.
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2017.
KinFin: software for taxon-aware analysis of clustered protein sequences. G3-Genes Genomes Genetics. 7:3349-3357.
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2017.
Leaf dry matter content is better at predicting above-ground net primary production than specific leaf area. Functional Ecology. 31:1336-1344.
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2017.
Levels of intra-specific AFLP diversity in tuber-bearing potato species with different breeding systems and ploidy Llevels. Frontiers in Genetics. 8:ArticleNo.119.
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2017.
Life at the boundary: photosynthesis at the soil-fluid interface. A synthesis focusing on mosses (vol 67, page 1613, 2016). Correction. Journal of Experimental Botany. 68:5247.
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2017.
Linking functional traits and species preferences to species’ abundance and occupancy trends through time to identify habitat changes in coastal ecosystems. Perspectives in Plant Ecology, Evolution and Systematics. 27:35-44.
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2017.
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2017.
Long-term functional structure and functional diversity changes in Scottish grasslands. Agriculture, Ecosystems and Environment. 247:352-362.
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2017.
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2017.
Long-term structural and functional diversity changes in Scottish grasslands. Agriculture, Ecosystems and Environment. 247:352-362.
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2017.
Major agricultural changes required to mitigate phosphorus losses under climate change. Nature Communications. 8:ArticleNo,161.
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2017.
Major agricultural changes required to mitigate phosphorus losses under climate change. Nature Communications. 8:ArticleNo,161.
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2017.
Maleimide scavenging enhances determination of protein S-palmitoylation state in acyl-exchange methods. Biotechniques. 62:69-75.
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2017.
Mapping and expression of genes with a role in raspberry fruit ripening and softening. Theoretical and Applied Genetics. 130:557-572..
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2017.
Mapping loci that control tuber and foliar symptoms caused by PVY in autotetraploid potato (Solanum tuberosum L.). G3-Genes Genomes Genetics. 7:3587-3595.
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2017.
Mapping peat in Scotland with remote sensing and site characteristics. European Journal of Soil Science. 68:28-38.
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2017.
Mapping peat in Scotland with remote sensing and site characteristics. European Journal of Soil Science. 68:28-38.
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2017.
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2017.
Meloidogyne graminicola: a major threat to rice agriculture. Molecular Plant Pathology. 18:3-15.
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2017.
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2017.
Metagenomic analysis of the gut microbiome of the common black slug arion ater in search of novel lignocellulose degrading enzymes. Frontiers in Microbiology. 9:ArticleNo.2181.
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2017.
A method for automatic segmentation and splitting of hyperspectral images of raspberry plants collected in field conditions. Plant Methods. 13:ArticleNo.74.
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2017.
Metrics for evaluating the ecological benefits of decreased nitrogen deposition. Biological Conservation. 212:454-463.
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2017.
Metrics to assess how longitudinal channel network connectivity and in-stream Atlantic salmon habitats are impacted by hydropower regulation. Hydrological Processes. 31:2132-2142.
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2017.
Microbial soil community analyses for forensic science: application to a blind test. Forensic Science International. 270:153-158.
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2017.
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2017.
Mitochondrial genome diversity in dagger and needle nematodes (Nematode: Longidoridae). Scientific Reports. 7
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2017.
Mitochondrial genomes diversity in dagger and needle nematodes (Nematode: Longidoridae). Scientific Reports. 7
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2017.
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2017.
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2017.
Molecular characterization of novel Bradyrhizobium strains nodulating ErioSema Chinese and Flemingia vestita, important unexplored native legumes of the sub-Himalayan region (Meghalaya) of India. Systematic and Applied Microbiology. 40:334-344.
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2017.
Monitoring for adaptive management or modernity: Lessons from recent initiatives for holistic environmental management. Environmental Policy and Governance. 27:311-324.
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2017.
mRNA levels of placental iron and zinc transporter genes are upregulated in Gambian women with low iron and zinc status. Journal of Nutrition. 147:1401-1409.
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2017.
Multi-technique approach to the petrophysical characterization of Berea sandstone core plugs (Cleveland Quarries, USA). Journal of Petroleum Science and Engineering. 149:436-455.
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2017.
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2017.
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2017.
A native parasitic plant systemically induces resistance in Jack Pine to a fungal symbiont of invasive mountain pine beetle. Journal of Chemical Ecology. 43:506-518.
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2017.
Natural flood management from the farmer’s perspective: criteria that affect uptake. Journal of Flood Risk Management. 10:205-218.
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2017.
Natural resource governance in lower Omo, Ethiopia - negotiation processes instead of property rights and rules? International Journal of the Commons. 11:ArticleNo.716.
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2017.
A new approach to modelling the relationship between annual population abundance indices and weather data. Journal of Agricultural Biological and Environmental Statistics. 22:427-445.
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2017.
New knowledge networks of small-scale farmers in Europe’s periphery. Land Use Policy. 63:428-439.
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2017.
A new model for root growth in soil with macropores. Plant and Soil. 415:99-116.
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2017.
A new proteinaceous pathogen-associated molecular pattern (PAMP) identified in Ascomycete fungi induces cell death in Solanaceae. New Phytologist. 214:1657-1672.
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2017.
New records of the velvet ant and Mutilla europaea Linnaeues, 1758. British Journal of Entomology and Natural History. 29:229-230.
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2017.
New technological interventions in conservation conflicts: Countering emotions and contested knowledge. Human Ecology. 45:683-695.
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2017.
Nitrogen availability alters rhizosphere processes mediating soil organic matter mineralisation. Plant and Soil. 417:499-510.
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2017.
Non-invasive protocol for kinematic monitoring of root growth under infrared light. Bio-protocol. 7:ArticleNo.e2390.
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2017.
Non-targeted metabolite profiling highlights the potential of strawberry leaves as a resource for specific bioactive compounds. Journal of the Science of Food and Agriculture. 97:2182-2190.
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2017.
Novel colon-available triterpenoids identified in raspberry fruits exhibit antigenotoxic activities in vitro. Molecular Nutrition and Food Research. 61:ArticleNo.1600327.
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2017.
Observation of extensive chromosome axis remodeling during the "diffuse-phase" of meiosis in large genome cereals. Frontiers in Plant Science. 8:ArticleNo.1235.
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2017.
Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance. Proceedings of the Royal Society B, Biological Sciences. 284:ArticleNo.1860.
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2017.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
One century of Nordic barley breeding: nitrogen use efficiency, agronomic traits and genetic diversity. Journal of Agricultural Science. 155:582-598.
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2017.
Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
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2017.
Origin might matter; people matter, too. A response to the comment by Rejmanek and Simberloff, 2016. Environmental Conservation. 44:100-101.
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2017.
Otolith chemistry reveals seamount fidelity in a deepwater fish. Deep-Sea Research, Part I. 121:183-189.
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2017.
An outlook on protein S-acylation in plants: what are the next steps? Journal of Experimental Botany. 68:3155-3164.
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2017.
Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli. Microbial Genomics, 3, (Open Access).
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2017.
People, places and earnings differentials. Regional Studies. 561:389-403.
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2017.
A perspective on crn proteins in the genomics age: evolution, classification, delivery and function revisited. Frontiers in Plant Science. 8
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2017.
Phenolic-enriched foods: sources and processing for enhanced benefits. Proceedings of the Nutrition Society. 76:163-171.
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2017.
Photosynthesis and drymass production of winter wheat in response to micro-sprinkling irrigation. Agronomy Journal. 109:549-561.
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2017.
PHYLIS: A low-cost portable visible range spectrometer for soil and plants. Sensors. 17:ArticleNo.99.
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2017.
Phytophthora infestans effector Pi14054 is a novel candidate suppressor of host silencing mechanisms. European Journal of Plant Pathology. 149:771-777.
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2017.
Plant breeding: past, present and future. Euphytica. 213:ArticleNo.UNSP60.
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2017.
Plant functional connectivity - integrating landscape structure and effective dispersal. Journal of Ecology. 105:1648-1656.
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2017.
A plant growth-promoting symbiosis between Mycena galopus and Vaccinium corymbosum seedlings. Mycorrhiza. 27:831-839.
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2017.
Plant parasitic nematode assemblages associated with sweet potato in Kenya and their relationship with environmental variables. Tropical Plant Pathology. 42:1-12.
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2017.
Plant-plant communication through common mycorrhizal networks. Advances in Botanical Research. 82:83-97.
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2017.
Pluralism of agricultural advisory service providers - Facts and insights from Europe. Journal of Rural Studies. 55:45-58.
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2017.
Pollution and climate change drive long-term change in Scottish wetland vegetation composition. Biological Conservation. 210:72-79.
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2017.
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2017.
Polyphenols journey through blood-brain barrier towards neuronal protection. Scientific Reports. 7:ArticleNo.11456.
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2017.
The possible evolution, and future, of CO2-concentrating mechanisms. Journal of Experimental Botany.
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2017.
The possible evolution, and future, of CO2-concentrating mechanisms. Journal of Experimental Botany. 68:3701-3716.
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2017.
The possible roles of algae in restricting the increase in atmospheric CO2 and global temperature. European Journal of Phycology. 52:506-522.
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2017.
Potential tracers for tracking septic tank effluent discharges in watercourses. Environmental Pollution. 228:245-255.
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2017.
Priorities for research in soil ecology. Pedobiologia. 63:1-7.
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2017.
Prospects for plant defence activatiors and biocontrol in IPM - concpets and lessons learnt so far. Crop Protection. 97:128-134.
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2017.
A prototype cloud-based reproducible data analysis and visualization platform for outputs of agent-based models. Environmental Modelling and Software. 96:172-180.
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2017.
Quantitative analysis of the tomato nuclear proteome during Phytophthora capsici infection unveils regulators of immunity. New Phytologist. 215:309-322.
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2017.
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2017.
A question of capacities? Community resilience and empowerment between assets, abilities and relationships Journal of Rural Studies. 54:187-197.
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2017.
Rainfall and temperature effects on fruit body production by stipitate hydnoid fungi in Inverey Wood, Scotland. Fungal Ecology. 27:137-140.
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2017.
A randomised controlled trial comparing a dietary antiplatelet, the water-soluble tomato extract Fruitflow, with 75mg aspirin in healthy subjects. European Journal of Clinical Nutritiion. 71:723-730.
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2017.
Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding. Journal of Experimental Botany. 68:4709-4723.
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2017.
Redox control of aphid resistance through altered cell wall composition and nutritional quality. Plant Physiology. 175:259-271.
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2017.
Reducing stomatal density in barley improves drought tolerance without impacting on yield. Plant Physiology. 174:776-787.
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2017.
Relationships between understory specialist species and local management practices in coppiced forests - evidence from the Italian Apennines. Forest Ecology and Management. 385:35-45.
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2017.
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2017.
Removal and attenuation of sewage effluent combined tracer signals of phosphorus, caffeine and saccharin in soil. Environmental Pollution. 223:277-285.
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2017.
Research priorities for harnessing plant microbiomes in sustainable agriculture. PLoS Biology. 15:ArticeleNo.e2001793.
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2017.
Response to Kruse-Plass et al. (2017) regarding the risk to non-target lepidopteran larvae exposed to pollen from one or more of three Bt maize events (MON810, Bt11 and 1507). Environmental Sciences Europe. 29:ArticleNo.21.
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2017.
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2017.
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2017.
Review and analysis of limitations in ways to improve conventional potato breeding. Potato Research. 60:171-193.
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2017.
The Rhizosheath - A potential trait for future agricultural sustainability occurs in orders throughout the angiosperms. Plant and Soil. Published online..
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2017.
The Rhizosheath - a potential trait for future agricultural sustainability occurs in orders throughout the angiosperms. Plant and Soil. 418:115-128.
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2017.
A risk-based approach for developing standards for irrigation with reclaimed water. Water Research. 126:372-384.
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2017.
Root biomechanical properties during establishment of woody perennials. Ecological Engineering. Published online..
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2017.
Root hair mutations displace the barley rhizosphere microbiota. Frontiers in Plant Science.. 8:ArticleNo.1094.
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2017.
RXLR effector AVR2 up-regulates a brassinosteroid responsive bHLH transcription factor to suppress immunity. Plant Physiology. 174:356-369.
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2017.
Scaling methane emissions in ruminants and global estimates in wild populations. Science of the Total Environment. 579:1572-1580.
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2017.
Scenario planning as communicative action: lessons from participatory exercises conducted for the Scottish livestock industry. Technological Forecasting and Social Change. 114:138-151.
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2017.
The science, policy and practice of nature-based solutions: an interdisciplinary perspective. Science of the Total Environment. 579:1215-1227.
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2017.
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2017.
Scottish farmers' intentions to afforest land in the context of farm diversification. Forest Policy and Economics. 78:122-132.
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2017.
Seasonal regulation of petal number. Plant Physiology. 175:886-903.
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2017.
Selective autophagy limits Cauliflower mosaic virus infection by NBR1-mediated targeting of viral capsid protein and particles. Proceedings of the National Academy of Sciences (PNAS). 114:E2026-E2035.
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2017.
Shaping an optimal soil by root-soil interaction. Trends in Plant Science. 22:823-829.
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2017.
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2017.
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2017.
Simulating soil carbon sequestration from long term fertilizer and manure additions under continuous wheat using the DailyDayCent model. Nutrient Cycling in Agroecosystems. 109:291-302.
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2017.
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2017.
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2017.
Social equity in governance of ecosystem services: synthesis from European treeline areas. Climate Research. 73:31-44.
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2017.
Social equity in governance of ecosystem services: synthesis from European treeline areas. Climate Research. 73:31-44.
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2017.
The social metabolism of Scotland: an environmental perspective. Energy Policy. 100:304-313.
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2017.
Soil carbon 4 per mille. Geoderma. 292:59-86.
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2017.
Soil carbon 4 per mille. Geoderma. 292:59-86.
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2017.
Soil carbon and nitrogen and barley yield responses to repeated additions of compost and slurry. Journal of Agricultural Science. 155:144-155.
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2017.
Soil characterisation by bacterial community analysis for forensic applications: a quantitative comparison of environmental technologies. Forensic Science International. 26:21-29.
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2017.
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2017.
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2017.
Soil microarthropod-plant community relationships in alpine moss- sedge heath. Applied Soil Ecology. 111:1-8.
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2017.
Soil organic carbon (SOC) equilibrium and model initialisation methods: an application to the Rothamsted carbon (RothC) model. Environmental Modeling and Assessment. 22:215-239.
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2017.
Species but not genotype diversity strongly impacts the establishment of rare colonisers. Functional Ecology. 31:1462-1470.
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2017.
A spectrophotometric assay for robust viability testing of seed batches using 2, 3, 5-tryphenyl tetrazolium chloride: using Hordeum vulgare L. as a model. Frontiers in Plant Science. 8:ArticleNo.e747.
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2017.
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2017.
Stable models for metastable systems? Lessons from sensitivity analysis of a Cellular Automata urban land use model Computers Environment and Urban Systems. 62:113-124.
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2017.
Strain identity of the ectomycorrhizal fungus Laccaria bicolor is more important than richness in regulating plant and fungal performance under nutrient rich conditions. Frontiers in Microbiology. 8:ArticleNo.1874.
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2017.
Straw amendment to paddy soil stimulates denitrification but biochar amendment promotes anaerobic ammonia oxidation. Journal of Soils and Sediments..
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2017.
Straw amendment to paddy soil stimulates denitrification but biochar amendment promotes anaerobic ammonia oxidation. Journal of Soils and Sediments. 17:2428-2437.
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2017.
A survey of root knot nematodes and resistance to Meloidogyne incognita in sweet potato varieties from Kenyan fields. Crop Protection. 92:114-121.
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2017.
Susceptibility of Macrosiphum euphorbiae to the parasitoid Aphidius ervi: larval development depends on host aphid genotype. Entomologia Experimentalis et Applicata. 162:148-158.
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2017.
The susceptibility of selected conifer foliage to infection with Phytophthora lateralis. Forest Pathology. 47:ArticleNo.e12333.
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2017.
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2017.
Swimming and twitching motility are essential for attachment and virulence of Pantoea ananatis in onion seedlings. Molecular Plant Pathology. 18:734-745.
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2017.
Temperature sensitivity of substrate-use efficiency can result from altered microbial physiology without change to community composition. Soil Biology and Biochemistry. 109:59-69.
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2017.
Temporal fatty acid profiles of human decomposition fluid in soil. Organic Geochemistry. 111:26-33.
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2017.
Testing scenarios to achieve workplace sustainability goals using backcasting nad agent-based modeling. Environment and Behavior. 49:1007-1037.
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2017.
Testing the utility of structure-from-motion photogrammetry reconstructions using small unmanned aerial vehicles and ground photography to estimate the extent of upland soil erosion. Earth Surface Processes and Landforms. Published online..
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2017.
Testing the utility of structure-from-motion photogrammetry reconstructions using small unmanned aerial vehicles and ground photography to estimate the extent of upland soil erosion. Earth Surface Processes and Landforms. 42:1860-1871.
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2017.
TetraploidSNPMap: Software for linkage analysis and QTL mapping in autotetraploid populations using SNP dosage data. Journal of Heredity. 108:438-442.
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2017.
Then and now: Examining older people’s engagement in outdoor recreation across the life course. Leisure Sciences. Published online..
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2017.
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2017.
A tool for cost-effectiveness analysis of field scale sediment-bound phosphorus mitigation measures and applications. Science of the Total Environment. 586:631-641.
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2017.
Total global agricultural land footprint associated with UK food supply 1986-2011. Global Environmental Change. 43:72-81.
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2017.
Towards the construction of a typology of management models of shooting opportunities in Scotland. Scottish Geographical Journal. Published online..
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2017.
Trade-offs between indicators of performance and sustainability in breeding suckler beef herds. Journal of Agricultural Science. 155:156-170.
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2017.
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2017.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
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2017.
Trees, soils, and warthogs - distribution of services and disservices from reforestation areas in southern Ethiopia. Forest Policy and Economics. 84:112-119.
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2017.
Trend analysis for integrated regional climate change impact assessments in the Lusatian river catchments (north-eastern Germany). Regional Environmental Change. 17:1751-1762.
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2017.
TSIS: an R package to infer alternative splicing isoform switches for time-series data. Bioinformatics. 33:3308-3310.
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2017.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
Understanding knowledge-workers’ interactions with workplace greenspace: open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. 49:314-338.
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2017.
Valuation of ecosystem services: paradox or Pandora’s box for decision-makers? One Ecosystem Journal. 2:ArticleNo.e14808.
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2017.
The value base of water governance: a multi-disciplinary perspective. Ecological Economics. 131:241-249.
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2017.
Variation in grain size and shape in a population of hull-less barley and its influence on yield and quality traits. Journal of Agricultural Science. 155:117-128.
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2017.
Variation in tuber mineral concentrations among accessions of Solanum species held in the Commonwealth Potato Collection. Genetic Resources and Crop Evolution. 64:1927-1935.
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2017.
A view not to be missed: Salient scene content interferes with cognitive restoration. PLoS ONE. 12:e0169997.
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2017.
Viral diagnostics in plants using next generation sequencing: computational analysis in practice. Frontiers in Plant Science. 8:ArticleNo.1770.
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2017.
Visual soil evaluation: a summary of some applications and potential developments for agriculture. Soil and Tillage Research. 173:114-124.
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2017.
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2017.
Vulnerability of the British swine industry to classical swine fever. Scientific Reports. 7
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2017.
Waiting or acting now? The effect on willingness-to-pay of delivering inherent uncertainty information in choice experiments Ecological Economics. 131:231-240.
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2017.
Water balance dynamics during ten years of ecological development at ChickenCreek catchment. Vadose Zone Journal. 16:1-14.
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2017.
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2017.
What do we know about decision support systems for landscape and environmental management? A review and expert survey within EU research projects Environmental Modelling and Software. 98:63-74.
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2017.
What is the limit for photoautotrophic plankton growth rates? Journal of Plankton Research. 39:13-22.
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2017.
Wheat cultivar yield response to some organic and conventional farming conditions and the yield potential of mixtures. Journal of Agricultural Science. 155:1045-1060.
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2017.
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2017.
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2017.
WiseEye: Next generation expandable and programmable camera trap platform for wildlife research. PLoS OBE. 12:e0169758.
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2017.
Zinc for better crop production and human health. Plant and Soil. 411:1-4.
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2017.
Inter-pregnancy weight change and the risk of recurrent pregnancy complications. PLoS ONE. 11:e0154812.
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2016.
The 2015 Bioinformatics Open Source Conference (BOSC 2015). PLoS Computational Biology. 12:e1004691.
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2016.
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2016.
3D deformation field in growing plant roots reveals both mechanical and biological responses to axial mechanical forces. Journal of Experimental Botany. 67:5605-5614.
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2016.
Achieving dietary recommendations and reducing greenhouse gas emissions: modelling diets to minimise the change from current intakes. International Journal of Behavioral Nutrition and Physical Activity. 13
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2016.
Adaptation of water resources systems to changing society and environment: a statement by the International Association of Hydrological Sciences. Hydrological Sciences Journal. 61:2803-2817.
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2016.
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2016.