- MacFarlane, S.A.; Zasada, I.A.; Lemaire, O.; Demageat, G., (In press) Nematode-borne plant viruses., In: Brown, J.K. (ed.). Vector-Mediated Transmission of Plant Pathogens. American Phytopathological Society Press, St. Paul, MN.
- Hunter, L.J.R.; Brockington, S.F.; Murphy, A.M.; Pate, A.E.; Gruden, K.; MacFarlane, S.A.; Palukaitis, P.; Carr, J.P., (2016) RNA-dependent RNA polymerase 1 in potato (Solanum tuberosum) and its relationship to other plant RNA-dependent RNA polymerases., Scientific Reports, 6, Article No. 23082.
- Lu, Y.W.; McGavin, W.; Cock, P.J.A.; Schnettler, E.; Yan, F.; Chen, J.P.; MacFarlane, S.A., (2015) Newly identified RNAs of raspberry leaf blotch virus encoding a related group of proteins., Journal of General Virology, 96, 3432-3439.
- MacFarlane, S.; McGavin, W.; Tzanetakis, I., (2015) Virus-testing by PCR and RT-PCR amplification in berry fruit., In: Lacomme, C. (ed.). Plant Pathology: Techniques and Protocols. (Methods in Molecular Biology, 1302) Springer, New York, 227-248.
- MacFarlane, S.; McGavin, W.; Tzanetakis, I., (2015) Virus-testing by PCR and RT-PCR amplification in berry fruit., In: Lacomme, C. (ed.). Plant Pathology: Techniques and Protocols. Methods in Molecular Biology, Volume 1303. Humana Press, 2nd edition.
- Scott, S.W.; MacFarlane, S.A.; McGavin, W.J.; Fargette, D., (2014) Cassava Ivorian bacilliform virus is a member of the genus Anulavirus., Archives of Virology, 159, 2791-2793.
- Bragard, C.; Caciagli, P.; Lemaire, O.; Lopez-Moya, J.J.; MacFarlane, S.; Peters, D.; Susi, P.; Torrance, L., (2013) Status and prospects of plant virus control through interference with vector transmission., Annual Review of Phytopathology, 51, 177-201.
- Gushchin, V.A.; Andreev, D.E.; Taliansky, M.E.; MacFarlane, S.E.; Solovyev, A.G.; Morozov, S.Y., (2013) Single amino acid substitution in the tobacco mosaic virus ORF6 protein suppresses formation of complex with eEF1A and cooperative nucleic acids binding in vitro., Doklady Biochemistry and Biophysics, 448, 1-4.
- Gushchin, V.A.; Lukhovitskaya, N.I.; Andreev, D.E.; Wright, K.M.; Taliansky, M.E.; Solovyev, A.G.; Morozov, S.; MacFarlane, S.A., (2013) Dynamic localization of two tobamovirus ORF6 proteins involves distinct organellar compartments., Journal of General Virology, 94, 230-240.
- Gushchin,V.A.; Andreev, D.E.; Taliansky, M.; MacFarlane, S.A.; Solovyev, A.G.; Morozov, S.Y., (2013) Replacement of amino acid in the ORF6 protein of tobacco mosaic virus prevents the formation of a complex with eEF1A and the cooperative binding to nucleic acids in vitro., Proceedings of the Russian Academy of Sciences, 448, 1-5.
- Hunter, L.J.R.; Westwood, J.H.; Heath, G.; Macaulay, K.; Smith, A.G.; MacFarlane, S.A.; Palukaitis, P.; Carr, J.P., (2013) Regulation of RNA-dependent RNA polymerase 1 and isochorismate synthase gene expression in arabidopsis., PLoS ONE, 8(6), e66530.
- Martin, R.R.; MacFarlane, S.; Sabanadzovic, S.; Quito, D.; Poudel, B.; Tzanetakis, I.E., (2013) Viruses and virus diseases of Rubus., Plant Disease, 97, 168-182.
- Yu, C.L.; Karlin, D.G.; Lu, Y.W.; Wright, K.; Chen, J.P.; MacFarlane, S., (2013) Experimental and bioinformatic evidence that raspberry leaf blotch emaravirus P4 is a movement protein of the 30K superfamily., Journal of General Virology, 94, 2117-2128.
- McGavin, W.J.; Mitchell, C.; Cock, P.J.A.; Wright, K.M.; MacFarlane, S.A., (2012) Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA., Journal of General Virology, 93, 430-437.
- McMenemy, L.S.; Hartley, S.E.; MacFarlane, S.A.; Karley, A.J.; Shepherd, T.; Johnson, S.N., (2012) Raspberry viruses manipulate the behaviour of their insect vectors., Entomologia Experimentalis et Applicata, 144, 56-68.
- Ashfaq, M.; McGavin, W.J.; MacFarlane, S.A., (2011) RNA2 of TRV SYM breaks the rules for tobravirus genome structure., Virus Research, 160, 435-438.
- Dolan, A.; MacFarlane, S.A.; McGavin, W.J.; Brennan, R.M.; McNicol, J.W., (2011) Blackcurrant reversion virus: validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants., Journal of Berry Research, 1, 201-208.
- Dolan, A.; MacFarlane, S.A.; Pitkin, Y.; McGavin, W.J., (2011) Validation of an improved diagnostic test to accelerate the certification of blackcurrant (Ribes nigrum L.) plants for breeding and propagation., Annual Report of the Scottish Crop Research Institute for 2010, pp28-29.
- McGavin, W.J.; Cock, P.J.A.; MacFarlane, S.A., (2011) Partial sequence and RT-PCR diagnostic test for the plant rhabdovirus Raspberry vein chlorosis virus., Plant Pathology, 60, 462-467.
- MacFarlane, S.A., (2010) Tobraviruses - plant pathogens and tools for biotechnology (Review)., Molecular Plant Pathology, 11, 577-583.
Current research interests
- Plant viruses are widespread in the natural environment and exhibit enormous variation in their structure and composition. Agricultural crops are under constant attack from viruses making an understanding of virus biology a necessity for devising new, more effective approaches to prevent virus disease in plants.
Current work includes a range of studies of viruses of raspberry, an important crop in Scotland in terms of both economics and nutritional health. Viruses are a major cause of disease in raspberry and other woody perennial crops and over time their disease impact increases as the plants become infected with mixtures of different viruses. We have characterised a number of viruses that are known to exist in the UK raspberry crop but are not well understood, (Black raspberry necrosis virus (BRNV), Raspberry leaf mottle virus (RLMV) and Raspberry vein chlorosis virus (RVCV)), to develop molecular diagnostics to be used in The James Hutton Institute High Health Certification Scheme. We also have generated an infectious clone system to aid research into Raspberry bushy dwarf virus (RBDV), a virus of great importance to the raspberry industry because of its involvement in crumbly fruit disease.
Recently we discovered a new, negative-strand RNA virus that is transmitted by eriophyid mites and is responsible for the emerging problem of leaf blotch disorder in many raspberry plantations. This new virus, Raspberry leaf blotch virus (RLBV), belongs to a newly identified group of plant viruses that cause disease in a wide variety of important crops. The molecular structure of these plant viruses shows that they are related to an important group of human and animal-infecting viruses, the bunyaviruses, and further study of RLBV may reveal parallels between the infection processes of these different viruses.
- New work has been started to study the resistance reactions of different potato cultivars to aphid-transmitted viruses, such as PVY, and to the nematode-transmitted virus, TRV, which causes spraing in potato tubers.
- In recent years I have researched the mechanism of action of the P19 protein of Tomato bushy stunt virus (TBSV). This is a pathogenicity protein that has a role in suppression of RNA silencing, symptom production in plants, and long- and short-distance movement of the virus within the plant. We have discovered an interaction between P19 and members of the ALY family of plant proteins.
- Other aspects of my research have included fundamental studies, primarily on Tobacco rattle virus (TRV), an important pathogen of potatoes in Scotland, Europe and North America, and Pea early-browning virus (PEBV), to understand the mechanism of transmission of these viruses by nematodes, a process that is central to the diseases they cause in the field.
- More recently it has been realised that plant viruses can be developed into tools that have great potential for functional genomic analysis of plants. I have engineered TRV, and the related viruses PEBV and Pepper ringspot virus (PepRSV), to be useful as vectors for gene expression and gene silencing in a variety of plant species.
- Bragard, C., Caciagli, P., Lemaire, O., Lopez-Moya, J.J., MacFarlane, S., Peters, D., Susi, P., Torrance, L. 2013. Status and prospects of plant virus control through interference with vector transmission. Annual Review of Phytopathology, In Press.
- MacFarlane, S., Zasada, I., Lemaire, O. and Demangeat, G. 2013. Nematode-borne plant viruses. In “Vector-Mediated Transmission of Plant Pathogens (Ed. J.K. Brown). American Phytopathological Society Press, St. Paul, MN, In Press.
- Gushchin, V.A., Lukhovitskaya, N.I., Andreev, D.E., Wright, K.E., Taliansky, M.E., Solovyev, A.G., Morozov, S.Y. and MacFarlane, S.A. 2013. Dynamic localization of two tobamovirus ORF6 proteins involves distinct organellar compartments. Journal of General Virology 94, 230 – 240.
- Martin, R.R., MacFarlane, S., Sabanadzovic, S., Quito, D., Poudel, B. and Tzanetakis, I.E. 2012. Viruses and virus diseases of Rubus. Plant Disease 97, 168-182.
- McMenemy, L.S., Hartley, S.E., MacFarlane, S.A., Karley, A.J., Shepherd, T. and Johnson, S.N. 2012. Plant viruses manipulate the behaviour of their insect vectors. Entomologia Experimentata et Applicata 144, 56-68.
- McGavin, W.J., Mitchell, C., Cock, P.J.A., Wright, K.M. and MacFarlane, S.A.. 2012. Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA. Journal of General Virology 93, 430 – 437.
- Dolan, A., MacFarlane, S.A, McGavin, W.J., Brennan, R.M. and McNicol, J.W. 2011.
- Blackcurrant reversion virus – validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants. Journal of Berry Research 1, 201-208.
- Ashfaq, M., McGavin, W. and MacFarlane, S.A. 2011. RNA2 of TRV SYM breaks the rules for tobravirus genome structure. Virus Research 160, 435-438.
- MacFarlane, S.A. 2010. Tobraviruses – Plant Pathogens and Tools for Biotechnology. Molecular Plant Pathology 11, 577-583.
- McGavin, W.J., McMenemy, L.S. and MacFarlane, S.A. 2010. The complete sequence of a UK strain of Black raspberry necrosis virus. Archives of Virology 155, 1897-1899.
- McGavin, W.J. and MacFarlane, S.A. 2009. Rubus chlorotic mottle virus, a new sobemovirus infecting raspberry and bramble. Virus Research 139, 10-13.
- MacFarlane, S.A. and McGavin, W.J. 2009. Genome activation by Raspberry bushy dwarf virus coat protein. Journal of General Virology 90, 747-753.
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