Robbie Waugh

• The Potato Genome Sequencing Consortium. 2011. Genome sequence and analysis of the tuber crop potato. Nature 475, 189-195.
• Russell, J., Dawson, I.K., Flavell, A.J., Steffenson, B., Weltzien, E., Booth, A., Ceccarelli, S., Grando, S., and Waugh, R. 2011. Genome- and chromosome-level evaluation of SNP diversity in geographically-matched samples of landraces and wild barleys from the Fertile Crescent: lessons for evolution and domestication. New Phytologist (in press).
• Mayer, K.F., Martis, M., Hedley, P.E., Simková, H., Liu, H., Morris, J.A., Steuernagel, B., Taudien, S., Roessner, S., Gundlach, H., Kubaláková, M., Suchánková, P., Murat, F., Felder, M., Nussbaumer, T., Graner, A., Salse, J., Endo, T., Sakai, H., Tanaka, T., Itoh, T., Sato, K., Platzer, M., Matsumoto, T., Scholz, U., Dolezel, J., Waugh, R., Stein, N. 2011. Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell 23(4), 1249-63.
• Chen, X.W., Hedley, P.E., Morris, J., Liu, H., Niks, R.E., Waugh, R. 2011. Combining genetical genomics and bulked segregant analysis-based differential expression: an approach to gene localization. Theoretical and Applied Genetics 122(7), 1375-1383.
• Ramsay, L., Comadran, J., Druka, A., Marshall, D.F., Thomas, W.T.B., Macaulay, M., MacKenzie, K., Simpson, C.G., Fuller, J., Hayes, P.M., Lundqvist, U., Franckowiak, J.D., Close, T.J., Muehlbauer, G. and Waugh, R. 2011. INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nature Genetics 43, 169-U125.
• 6. Druka, A., Franckowiak, J., Lundqvist, U., Bonar, N., Alexander, J., Houston, K., Radovic, S., Shahinnia, F., Vendramin, V., Morgante, M., Stein, N., Waugh, R. 2011. Genetic dissection of barley morphology and development. Plant Physiology 155, 617-627.
• Comadran, J., Ramsay, L., MacKenzie, K., Hayes, P., Close, T.J., Muehlbauer, G., Stein, N., Waugh, R. 2010. Patterns of Polymorphism and Linkage Disequilibrium in Cultivated Barley. Theoretical and Applied Genetics 122, 523-531.
• Cockram, J., White, J., Zuluaga, D.L., Smith, D., Comadran, J., Macaulay, M., Luo, Z.W., Kearsey, M.J., Werner, P., Harrap, D., Tapsell, C., Liu, H., Hedley, P.E., Stein, N., Schulte, D., Steuernagel, B., Marshall, D.F., Thomas, W.T.B., Ramsay, L., Mackay, I., Balding, D.J., Waugh, R., O'Sullivan, D.M. AGOUEB Consortium. 2010. Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences 107, 21611-21616.
• Chen, X.W., Niks, R.E., Hedley, P.E., Morris, J., Druka, A., Marcel, T.C., Vels, A., Waugh, R. 2010. Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley. BMC Genomics 11, 629.
• Chen, X.W., Hackett, C.A., Niks, R.E., Hedley, P.E., Booth, C., Druka, A., Marcel, T.C., Vels, A., Bayer, M., Milne, I., Morris, J., Ramsay, L., Marshall, D.F., Cardle, L. and Waugh, R. 2010. An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One 5, e8598.
• Druka, A., Potokina, E., Luo, Z.W., Jiang, N., Chen, X.W., Kearsey, M.J. and Waugh, R. 2010. Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal 8, 10-27.
• Moragues, M., Comadran, J., Waugh, R., Milne, I., Baum, M., Flavell, A.J. and Russell, J.R. 2010. Effects of ascertainment bias and marker number on estimations of barley diversity from high throughput SNP genotype data. Theoretical and Applied Genetics 120, 1525-1534.
• Rustenholz, C., Hedley, P.E., Morris, J., Choulet, F., Feuillet, C., Waugh, R. and Paux, E. 2010. Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources. BMC Genomics 11, 714.
• Close, T.J., Bhat, P.R., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., Druka, A., Stein, N., Svensson, J.T., Wanamaker, S., Bozdag, S., Roose, M.L., Moscou, M.J., Varshney, R., Chao, S., Szücs, P., Sato, K., Hayes, P.M., Matthews, D.E., Marshall, D.F., Muehlbauer, G.J., Graner, A., deYoung, J., Madishetty, K., Fenton, R.D., Condamine, P. and Waugh, R. 2009. Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10, 582.
• Salse, J., Abrouk, M., Bolot, S., Guilhot, N., Courcelle, E., Faraut, T., Waugh, R., Close, T.J., Messing, J. and Feuillet, C. 2009. Reconstruction of monocotyledonous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences USA 106, 14908-14913.
• Schreiber, A.W.J., Sutton, T., Caldo, R.A., Kalashyan, E., Lovell, B., Mayo, G., Muehlbauer, G., Druka, A., Waugh, R., Wise, R.P., Langridge, P. and Baumann, U. 2009. Comparative transcriptomics in the Triticeae. BMC Genomics 10, 285.
• Schulte, D., Close, T.J., Graner, A., Langridge, P., Matsumoto, T., Muehlbauer, G.J., Sato, K., Schulman, A.H., Waugh, R., Wise, R.P. and Stein, N. 2009. International Barley Sequencing Consortium - at the threshold of efficient access to the barley genome. Plant Physiology 149, 142-147.
• Thiel, T., Graner, A., Waugh, R., Grosse, I., Close, T.J. and Stein, N. 2009. Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. BMC Evolutionary Biology 9, 209.
• Wang, M.H., Hu, X.H., Li, G., Leach, L.J., Potokina, E., Druka, A., Waugh, R., Kearsey, M.J. and Luo, Z.W. 2009. Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Computational Biology 5, e1000317.
• Waugh, R., Jannink, J.L., Muehlbauer, G.J. and Ramsay, L. 2009. The emergence of whole genome association scans in barley. Current Opinion in Plant Biology 12, 218-222.

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