Bioinformatics

Computational solutions for large-scale genomics, phenomics and biological data analysis

Advances in genomics and other –omics technologies have placed big data at the centre of plant and environmental science. Our bioinformatics expertise integrates computational analysis, data systems and visualisation tools to interpret complex biological datasets and unlock actionable scientific insight.

Part of the Information and Computational Sciences Department at The James Hutton Institute, the Applied Bioinformatics Group, comprises staff with experience in genomics, modelling, biological visualization, information systems, software development, systems biology and synthetic biology, who have a track record in the design and implementation of novel solutions to meet diverse client needs.

Software developed by the Applied Bioinformatics Group at the James Hutton Institute, is used worldwide.  This includes applications such as Germinate, Helium, GridScore, Tablet and Flapjack and covers everything from data collection through to data storage data visualization.

We also offer consultancy in the use and setting up of our software for specific needs.

Expertise within the group includes (but is not limited to) pathogen diagnostics, marker development, genome assembly and annotation, high-throughput genotyping, database and information systems development, software development, exome capture, RNA-sequencing, small RNAs, regulatory networks, protein engineering, alternative splicing, metabolic reconstruction, mobile applications development, algorithm development, bioinformatics consultancy and bioinformatics training.

The Applied Bioinformatics Group applies this expertise and experience to a range of projects, collaborating with partners across a wide breadth of sectors and disciplines.

Paul Shaw, Bioinformatician ICS
  • Crops
  • Viral, bacterial and fungal plant pathogens
  • Pests

This is a unique offering of expertise, specific to agricultural science, but applicable to much more.  

bioinformatics software
Germinate website

What is bioinformatics in biological research?

Bioinformatics uses computational tools and data analysis techniques to study biological data, particularly genetic and genomic information. Collaborations involving James Hutton Institute Scientific Services use bioinformatics to analyse large biological datasets and support modern life science research.

Why is bioinformatics important for genetics and genomics?

Bioinformatics allows scientists to process and interpret vast amounts of genetic data generated by modern sequencing technologies. These analyses help researchers understand genetic variation, gene function and biological processes.

What types of data are analysed using bioinformatics?

Bioinformatics is commonly used to analyse DNA sequences, genomic data, transcriptomics data and other large biological datasets. This work helps support research in plant science, microbiology and environmental biology.

Contact for more information

Senior Research Scientist
Based in Dundee
T: +44 (0)1382 568864
Paul focuses on software development for plant genetic resources, genetics and plant breeding. He leads several projects where his research contributes towards making experimental data including plant passport, pedigree, phenotypic and genotypic data available to collaborators, research and breeding communities using a suite of database and visualization tools that his team develops. He is particularly interested in biological visualization and how data can be effectively presented, explored and accessed in logical, digestible chunks in order to gain maximum impact and insight. He is also interested in how biological entities, such as plant accessions in pedigrees, and samples in plant breeding and genetics experiments, can be visualized and modelled using graphs.