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Trinder CJ, Johnson D, Artz RRE.  2009.  Litter type, but not plant cover, regulates initial litter decomposition and fungal community structure in recolonising cutover peatlands. Soil Biology and Biochemistry. 41(3):651-655.
Artz RRE, Reid E, Anderson IC, Campbell CD, Cairney JWG.  2009.  Long term repeated prescribed burning increases evenness in the basidiomycete laccase gene pool in forest soils. FEMS Microbiology Ecology. 67(3):397-410.
Vinten AJA, Avery LM, Potts JM, Strachan N.  2009.  Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3(5):744-752.
Futter MN, Helliwell RC, Hutchins M, Aherne J.  2009.  Modelling the effects of changing climate and nitrogen deposition on nitrate dynamics in a Scottish mountain catchment. Hydrology Research. 40(2-3):153-166.
Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al..  2009.  Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology. 11(10):2510-2525.
Winward GP, Avery LM, Stephenson T, Jeffrey P, Le Corre KS, Fewtrell L, Jefferson B.  2009.  Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
Winward GP, Avery LM, Stephenson T, Jeffrey P, Le Corre KS, Fewtrell L, Jefferson B.  2009.  Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
Coleby AM, Aspinall PA, Miller RA.  2009.  Public attitudes and participation in wind turbine development. Journal of Environmental Assessment Policy and Management. 11(1):69-95.
Grelet GA, Johnson D, Paterson E, Anderson IC, Alexander IJ.  2009.  Reciprocal carbon and nitrogen transfer between an ericaceous dwarf shrub and fungi isolated from Piceirhiza bicolorata ectomycorrhizas. New Phytologist. 182(2):359-366.
Robinson CH, Szaro TM, Izzo AD, Anderson IC, Parkin PI, Bruns TD.  2009.  Spatial distribution of fungal communities in a coastal grassland soil. Soil Biology and Biochemistry. 41(2):414-416.
van der Linde S, Alexander IJ, Anderson IC.  2009.  Spatial distribution of sporocarps of stipitate hydnoid fungi and their belowground mycelium. FEMS Microbiology Ecology. 69(3):344-352.
Ferrera R, Trevisol P, Acutis M, Rana G, Richter G, Baggaley NJ.  2009.  Topographic impacts on wheat yields under climate change: two contrasted case studies in Europe. Theoretical and Applied Climatology. Published online.
Shotyk W, Krachler M, Aeschbach-Hertig W, Hillier S, Zheng J.  2009.  Trace elements in recent groundwater of an artesian flow system and comparison with snow: enrichments, depletions, and chemical evolution of the water. Journal of Environmental Monitoring, 12, 208-217..
Walker CA, K M, Grenville-Briggs LJ, Avrova AO, Horner NR, McKinnon AD, Whisson SC, Birch PRJ, van West P.  2008.  A putative DEAD-box RNA-helicase is required for normal zoospore development in the late blight pathogen Phytophthora infestans. Fungal Genetics and Biology. 45:954-962. Abstract
Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Francia E, Pecchioni N, Li Destri O, Akar T et al..  2008.  Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.
Cameron AR, Anton S, Melville L, Houston NP, Dayal S, McDougall GJ, Stewart D, Rena G.  2008.  Black tea polyphenols mimic insulin/insulin-like growth factor-1 signalling to the longevity factor FOXO1a. Aging Cell. 7:69-77. Abstract
Grenville-Briggs LJ, Anderson VL, Fugelstad J, Avrova AO, Bouzenzana J, Williams A, Wawra S, Whisson SC, Birch PRJ, Bulone V et al..  2008.  Cellulose synthesis in Phytophthora infestans is required for normal appressorium formation and successful infection of potato. Plant Cell. 20:720-738. Abstract
Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Pecchioni N, Tondelli A, Akar T, Al-Yassin A et al..  2008.  Changes in allele frequencies in landraces, old and modern barley cultivars of marker loci close to QTL for grain yield under high and low input conditions. Euphytica. 163:435-447. Abstract
Adam MAM, Phillips MS, Jones JT, Blok VC.  2008.  Characterisation of the cellulose binding protein Mj-cbp-1 of the root knot nematode, Meloidogyne javanica. Physiological and Molecular Plant Pathology. 72:21-28. Abstract
Abecia L, Balcells J, Fondevila M, Belenguer A, Holtrop G, Lobley GE.  2008.  Contribution of gut microbial lysine to liver and milk amino acids in lactating does. British Journal of Nutrition. 100:977-983.
Gabrenaite-Verhouskaya R, Andreev IA, Kalinina NO, Torrance L, Taliansky ME, Makinen K.  2008.  Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants. Journal of General Virology. 89:829-838. Abstract
Sneddon AA, Tsofliou F, Fyfe CL, Matheson I, Jackson DM, Horgan GW, Winzell MS, Wahle KWJ, Ahren B, Williams LM.  2008.  Effect of a conjugated linoleic acid and omega-3 fatty acid mixture on body composition and adiponectin. Obesity. 16:1019-1024. Abstract
Kindred DR, Verhoeven TMO, Weightman RM, Swanston JS, Agu RC, Brosnan JM, Sylvester-Bradley R.  2008.  Effects of variety and fertiliser nitrogen on alcohol yield, grain yield, starch and protein content, and protein composition of winter wheat. Journal of Cereal Science. 48:46-57. Abstract
Artz RRE, Chapman SJ, Robertson AHJ, Potts JM, Laggoun-D F, Gogo S, Comont L, Disnar JR, Francez AJ.  2008.  FTIR spectroscopy can be used as a screening tool for organic matter quality in regenerating cutover peatlands. Soil Biology & Biochemistry. 40:515-527. Abstract
M C, Crosley LK, Nicol F, Horgan GW, Mathers JC, Arthur JR, Hesketh JE.  2008.  Functional effects of a common single-nucleotide polymorphism (GPX4c718t) in the glutathione peroxidase 4 gene: Interaction with sex. American Journal of Clinical Nutrition. 87:1019-1027. Abstract
Judelson HS, Ah Fong AMV, Aux G, Avrova AO, Bruce CR, Cakir C, da Cunha L, Grenville-Briggs LJ, Latijnhouwers M, Ligterink W et al..  2008.  Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome. Molecular Plant-Microbe Interaction. 21:433-447. Abstract
Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EGJ, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC et al..  2008.  Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.
Van Toor RF, Foster SP, Anstead JA, Mitchinson S, Fenton B, Kasprowicz L.  2008.  Insecticide resistance and genetic composition of Myzus persicae (Hemiptera:Aphididae) on field potatoes in New Zealand. Crop Protection. 27:236-247. Abstract
Abdullahi YA, Akunna JC, White NA, Hallett PD, Wheatley RE.  2008.  Investigating the effects of anaerobic and aerobic post-treatment on quality and stability of organic fraction of municipal solid waste as soil amendment. Bioresource Technology. 99:8631-8636. Abstract
Comadran J, Russell JR, van Eeuwijk FA, Ceccarelli S, Grando S, Baum M, Stanca AM, Pecchioni N, Mastrangelo AM, Akar T et al..  2008.  Mapping adaptation of barley to droughted environments. Euphytica. 161:35-45. Abstract
Avrova AO, Boevink P, Young V, Grenville-Briggs LJ, van West P, Birch PRJ, Whisson SC.  2008.  A novel Phytophthora infestans haustorium-specific membrane protein is requred for infection of potato. Cellular Microbiology. 10:2271-2284. Abstract
Canetta E, Kim S-H, Kalinina NO, Shaw J, Adya AK, Gillespie T, Brown JWS, Taliansky ME.  2008.  A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro. Journal of Molecular Biology. 376:932-937. Abstract
Grouffaud S, van West P, Avrova AO, Birch PRJ, Whisson SC.  2008.  Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans. Microbiology. 154:3743-3751. Abstract
Bohanec M, Mess A, Scatasta S, Angevin F, Griffiths BS, Krogh PH, Znidars M, Dzeroski S.  2008.  A qualitative multi-attribute model for economic and ecological assessment of genetically modified crops. Ecological Modelling. 215:247-261. Abstract
Broadley MR, Hammond JP, King GJ, Astley D, Bowen HC, Meacham MC, Mead A, Pink DAC, Teakle G, Hayden R et al..  2008.  Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea. Plant Physiology. 146:1707-1720. Abstract
Mahmood-ul-Hassan M, Akhtar MS, Gregory PJ.  2008.  Solute movement through intact columns of cryoturbated Upper Chalk. Hydrological Processes. 22:2086-2093. Abstract
Glasbey CA, Allcroft DJ.  2008.  A spatiotemporal auto-regressive moving average model for solar radiation. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:343-355. Abstract
Johnson SN, Anderson EA, Dawson G, Griffiths DW.  2008.  Varietal susceptibility of potatoes to wireworm herbivory. Agricultural and Forest Entomology. 10:167-174. Abstract
Tingem M, Rivington M, Bellocchi G, Azam-Ali S, Colls J.  2008.  Adaptation assessments for crop production in response to climate change in Cameroon. African Journal of Plant Science and Biotechnology. 2:10-17.
Izumi H, Cairney JWG, Killham K, Moore ERB, Alexander IJ, Anderson IC.  2008.  Bacteria associated with ectomycorrhizas of slash pine (Pinus elliottii) in south eastern Queensland, Australia. FEMS Microbiology Letters. 282(2):196-204.
Pidou M, Memon FA, Avery LM, Parsons SA, Liu S, Stephenson T, Jeffrey P, Jefferson B.  2008.  Chemical solutions for grey water recycling. Chemosphere. 71:147-155.
Winward GP, Avery LM, Stephenson T, Jefferson B.  2008.  Chlorine disinfection of greywater for reuse: effect of organics and particles. Water Research. 42(1-2):483-491.
Aitkenhead MJ, Aalders IH.  2008.  Classification of Landsat TM imagery for land cover using neural networks. International Journal of Remote Sensing. 29(7):2075.
Avery LM, Frazer-Williams RAD, Winward G, Jeffrey P, Shirley-Smith C, Liu S, Memon FA, Jefferson B.  2008.  Constructed wetlands for grey water treatment. Ecohydrology and Hydrobiology. 7(3-4):191-200.
Frazer-Williams RAD, Avery LM, Winward G, Jeffrey P, Shirley-Smith C, Liu S, Jefferson B.  2008.  Constructed wetlands for urban grey water recycling. International Journal of Environmental Pollution. 33(1):93-109.
Trinder CJ, Artz RRE, Johnson D.  2008.  Contribution of plant photosynthate to soil respiration and dissolved organic carbon in a naturally recolonising cutover peatland. Soil Biology and Biochemistry. 40(7):1622-1628.
Spurgeon DJ, Rowl, P., Ainsworth G, Rotheryl P, Long S, Black HIJ.  2008.  Distribution patterns of metals (Cd, Cu, Cr, Ni, Pb, V and Zn) in British soils. Environmental Pollution. 153(2):273-283.
Izumi H, Anderson IC, Killham K, Moore ERB.  2008.  Diversity of predominant endophytic bacteria in European deciduous and coniferous trees. Canadian Journal of Microbiology. 54(3):173-179.
Anderson IC, Parkin PI, Campbell CD.  2008.  DNA- and RNA- derived assessments of fungal community composition in soil amended with sewage sludge rich in cadmium, copper and zinc. Soil Biology and Biochemistry. 40(9):2358-2365.
Perez-Barberia FJ, Perez-Fernandez E, Robertson E, Alvarez-Enriquez BE.  2008.  Does the Jarman-Bell principle at intra-specific level explain sexual segregation in polygynous ungulates? Sex differences in forage digestibility in Soay sheep Oecologia. 157(1):21-30.
Wilson MJ, Certini G, Campbell CD, Anderson IC, Hillier S.  2008.  Does the preferential microbial colonisation of ferromagnesian minerals affect mineral weathering in soil? Naturwissenschaften. 95(9):851-858.
Tingem M, Rivington M, Bellocchi G, Azam-Ali S, Colls J.  2008.  Effects of climate change on Cameroon crop production: Simulation results using GCM scenarios. Climate Research. 36:65-77.
Pisani LF, Pocar P, Antonini S, Brevini TAL, Rhind SM, Gandolfi F.  2008.  Effects of pre-mating nutrition on mRNA levels of developmentally relevant genes in sheep oocytes and granulosa cells. Reproduction. 136:303-312.
Sibbald AM, Oom SP, Hooper RJ, Anderson R.  2008.  Effects of social behaviour on the spatial distribution of sheep grazing a complex vegetation mosaic. Applied Animal Behaviour Science. 115(3-4):149-159.
Metcalfe DB, Meir P, Aragao LEOC, da Costa ACL, Braga A, Goncalves PHL, de Athaydes J, Dawson LA, Malhi Y, Williams M.  2008.  The effects of water availability on root growth and morphology in an Amazon forest. Root responses to soil moisture variation at an eastern Amazon rainforest site. Plant and Soil. 311(1-2):189-199.
Winward G, Avery LM, Stephenson T, Jefferson B.  2008.  Essential oils for the disinfection of grey water. Water Research. 42(8-9):2260-2268.
Acevedo P, Ruiz-Fons F, Vicente J, Reyes-Garcia AR, Alzaga V, Gortazar C.  2008.  Estimating red deer abundance in a wide range of management situations in Mediterranean habitats. Journal of Zoology. 276(1):37-47.
Brooker RW, Maestre FT, Callaway RM, Lortie CL, Cavieres LA, Kunstler G, Liancourt P, Tielborger K, Travis JMJ, Anthelme F et al..  2008.  Facilitation in plant communities: the past, the present and the future. Journal of Ecology. 96:18-34.
Vinten AJA, Sym G, Avdic K, Crawford C, Duncan A, Merrilees DW.  2008.  Faecal indicator pollution from a dairy farm in Ayrshire, Scotland: source apportionment, risk assessment and potential of mitigation measures. Water Research. 42(4-5):997-1012.
Artz RRE, Chapman SJ, Robertson J, Potts JM, Laggoun-Defarge F, Gogo S, Comont L, Disnar JR, Francez AJ.  2008.  FTIR spectroscopy can be used as a screening tool for organic matter quality in regenerating cutover peatlands. Soil Biology and Biochemistry. 40(2):515-527.
Artz RRE, Chapman SJ, Siegenthaler A, Bortoluzzi E, YliPetays M, Francez AJ.  2008.  Functional microbial diversity in European remediating cutover peatlands is directed by labile carbon. Journal of Applied Ecology. 45(6):1799-1809.
Pakeman RJ, Garnier E, Lavorel S, Ansquer P, Castro H, Cruz P, Dolezal J, Eriksson O, Golodets C, Kleyer M et al..  2008.  Impact of abundance weighting on the response of seed traits to climate and land use. Journal of Ecology. 96(2):355-366.
Amar A, Thirgood SJ, Pearce-Higgins J, Redpath S.  2008.  The impact of raptors on the abundance of upland passerines and waders. Oikos. 117(8):1143-1152.
Aherne J, Futter MN, Dillon P.  2008.  The impacts of future climate change and dissolved organic carbon on acidification recovery at Plastic Lake, Ontario. Hydrology and Earth System Sciences. 12:383-392.
Toberman H, Freeman C, Artz RRE, Evans C, Fenner N.  2008.  Impeded drainage stimulates extracellular phenol oxidase activity in riparian peat cores. Soil Use and Management. 24(4):357-365.
Fowler PA, Dora NJ, McFeran H, Amezaga MR, Miller DW, Lea RG, Cash P, McNeilly AS, Evans NP, Cotinot C et al..  2008.  In utero exposure to low doses of environmental pollutants disrupts fetal ovarian development in sheep. Molecular Human Reproduction, 14, 269-280.. 14(5):269-280.
Trinder CJ, Artz RRE, Johnson D.  2008.  Interactions between fungal community structure, litter decomposition and depth of water-table in a cutover peatland. FEMS Microbiology Ecology. 64(3):433-448.
Williams AP, Gordon H, Jones D, Strachan N, Avery LM, Killham K.  2008.  Leaching of bioluminescent Escherichia coli O157:H7 from sheep and cattle faeces during rainstorm events. Journal of Applied Microbiology. 105(5):1452-1460.
Rahman A, Duncan AJ, Miller DW, Clemens J, Frutos P, Gordon IJ, Rehman A, Baig A, Ali F, Wright IA.  2008.  Livestock feed resources, production and management in the agro-pastoral system of the Hindu Kush-Karakoram-Himalayan region of Pakistan: The effect of accessibility. Agricultural Systems. 96(1-3):26-36.
Phuyal M, Artz RRE, Sheppard L, Johnson D.  2008.  Long-term nitrogen deposition increases phosphorus limitation of bryophytes in an ombrotrophic bog. Plant Ecology. 196(1):111-121.
Brown E, Aitkenhead MJ, Wright R, Aalders IH.  2008.  Mapping and classification of peatland on the Isle of Lewis using Landsat ETM+. Scottish Geographcial Journal. 123(3):173-192.
Aalders IH.  2008.  Modelling land use decision behavior with Bayesian belief networks. Ecology and Society. 13(1):16.
Williams AP, Avery LM, Killham K, Jones DL.  2008.  Moisture, sawdust, and bleach regulate the persistence of Escherichia coli O157 : H7 on floor surfaces in butcher shops. Food Control. 19(12):1119-1125.
Aitkenhead MJ, Cooper RJ.  2008.  Neural network time series prediction of environmental variables in a small upland headwater in NE Scotland. Hydrological Processes. 22:3091-3101.
Richards M, McDonald AJS, Aitkenhead MJ.  2008.  Optimisation of competition indices using simulated annealing and artificial neural networks. Ecological Modelling. 214(2-4):375-384.
Leckie FM, Arroyo B, Redpath SM, Thirgood SJ.  2008.  Parental differences in brood provisioning by Hen Harriers Circus cyaneus. Bird Study. 55(2):209-215.
van der Linde S, Alexander IJ, Anderson IC.  2008.  A PCR-based method for detecting the mycelia of stipitate hydnoid fungi in soil. Journal of Microbiological Methods. 75(1):40-46.
Chaudri A, McGrath S, Gibbs P, Chambers B, Carlton-Smith C, Bacon J, Campbell CD, Aitken M.  2008.  Population size of indigenous Rhizobium leguminosarum biovar trifolii in long-term field experiments with sewage sludge cake, metal-amended liquid sludge or metal salts: Effects of zinc, copper and cadmium. Soil Biology and Biochemistry. 40(7):1670-1680.
Aitkenhead MJ, Aalders IH.  2008.  Predicting land cover using GIS, Bayesian and evolutionary algorithm methods. Journal of Environmental Management.. 90:236-250.
Fomina M, Charnock JM, Hillier S, Alvarez R, Livens F, Gadd GM.  2008.  Role of fungi in the biochemical fate of depleted uranium. Current Biology. 18(9):R375-R377.
Palacio S, Milla R, Albuixech J, Perez-Rontome C, Camarero JJ, Maestro M, Montserrat-Marti G.  2008.  Seasonal variability of dry matter content and its relationship with shoot growth and nonstructural carbohydrates. New Phytologist. 180(1):133-142.
Weigang Y, Artz RRE, Johnson D.  2008.  Species-specific effects of plants colonising cut-over peatlands on patterns of carbon source utilisation by soil microorganisms. Soil Biology and Biochemistry. 40(2):544-549.
Winward G, Avery LM, Frazer-Williams RAD, Jeffrey P, Stephenson T, Jefferson B.  2008.  A study of the microbial quality of grey water and an evaluation of treatment technologies for reuse. Ecological Engineering. 32(2):187-197.
Toberman H, Freeman C, Evans C, Fenner N, Artz RRE.  2008.  Summer drought decreases soil fungal diversity and associated phenol oxidase activity in upland Calluna heathland soil. FEMS Microbiology Ecology. 66(2):426-436.
Toberman H, Evan C, Freeman C, Fenner N, Artz RRE.  2008.  Summer drought effects upon soil and litter phenol oxidase activity and soluble carbon release in an upland Calluna heathland. Soil Biology and Biochemistry. 40(6):1519-1532.
Avery LM, Williams AP, Killham K, Jones DL.  2008.  Survival of Eschericgia coli O157:H7 in waters from lakes, troughs, rivers, puddles and animal drinking troughs. The Science of the Total Environment. 389(2-3):378-385.
Gelan A, Shannon P, Aitkenhead M.  2008.  Sustainable local land use policy: rhetoric and reality. Local Environment. 13(4):291-308.
Trinder CJ, Artz RRE, Johnson D.  2008.  Temporal patterns of litter production by vascular plants colonising cut-over peatlands. Wetlands. 28(1):245-250.
Winward G, Avery LM, Stephenson T, Jefferson B.  2008.  UV disinfection of grey water: particle size effect. Environmental Technology. 29(2):235-244.
Vagiri M, Conner S, Stewart D, Andersson SC, Verrall S, Johansson E, Rumpunen K.  2008.  Phenolic compounds in blackcurrant (Ribes nigrum L.) leaves relative to leaf position and harvest date. Food Chemistry. 172:135-142.
Andersen MN, Sausse C, Lacroix B, Caul S, Mess A.  2007.  Agricultural studies of GM maize and the field experimental infrastructure of ECOGEN. Pedobiologia. 51:175-184. Abstract
Kr E, Tups A, Archer ZA, Ross AW, Moar KM, Bell LM, Duncan JS, Mayer CD, Morgan PJ, Mercer JG et al..  2007.  Altered expression of SOCS3 in the hypothalamic arcuate nucleus during seasonal body mass changes in the field vole, Microtus agrestis. Journal of Neuroendocrinology. 19:83-94. Abstract
Swanston JS, Smith PL, Gillespie TL, Brosnan JM, Bringhurst TA, Agu RC.  2007.  Associations between grain characteristics and alcohol yield among soft wheat varieties. Journal of the Science of Food and Agriculture. 87:676-683. Abstract
Artz RRE, Anderson IC, Chapman SJ, Hagn A, Schloter M, Potts JM, Campbell CD.  2007.  Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands. Microbial Ecology. 54:508-522. Abstract
El Zemrany H, Czarnes S, Hallett PD, Alamercery S, Bally R, Monrozier LJ.  2007.  Early changes in root characteristics of maize (Zea mays) following seed inoculation with the PGPR Azospirillum lipoferum CRT1. Plant and Soil. 291:109-118. Abstract
Andersen HS, Gambling L, Holtrop G, McArdle HJ.  2007.  Effect of dietary copper deficiency on iron metabolism in the pregnant rat. British Journal of Nutrition. 97:239-246. Abstract
Cortet J, Griffiths BS, Bohanec M, Demsar D, Andersen MN, Caul S, Birch ANE, Pernin C, Tabone E, de Vaufleury A et al..  2007.  Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
de Vaufleury A, Kramarz P, Binet P, Cortet J, Caul S, Andersen MN, Plumey E, Coeurdassier M, Krogh PH.  2007.  Exposure and effects assessments of Bt maize on non-target organisms (gastropod, microarthropods, mycorrhizal fungi) in a semi-field microcosm experiment. Pedobiologia. 51:185-194. Abstract
Kikuchi T, Aikawa T, Kosaka H, Pritchard L, Ogura N, Jones JT.  2007.  Expressed sequence tag (EST) analysis of the pine wood nematode Bursaphelenchus xylophilus and B. mucronatus. Molecular and Biochemical Parasitology. 155:9-17. Abstract
Jing R, Johnson R, Seres A, Kiss G, Ambrose MJ, Knox MR, Ellis THN, Flavell AJ.  2007.  Gene-based sequence diversity analysis of field pea (Pisum). Genetics. 177:2263-2275. Abstract
M C, Crosley LK, Nicol F, Beckett GJ, Howie AF, Hill KE, Horgan GW, Mathers JC, Arthur JR, Hesketh JE.  2007.  Genetic polymorphisms in the human selenoprotein P gene determine the response of selenoprotein markers to selenium supplementation in a gender-specific manner (the SELGEN study). FASEB Journal. 21:3063-3074. Abstract
Sims M, Elston DA, Larkham A, Nussey DH, Albon SD.  2007.  Identifying when weather influences life-history traits of grazing herbivores. Journal of Animal Ecology. 76:761-770. Abstract
Belenguer A, Duncan SH, Holtrop G, Anderson SE, Lobley GE, Flint HJ.  2007.  Impact of pH on lactate formation and utilization by human fecal microbial communities. Applied and Environmental Microbiology. 73:6526-6533. Abstract
Sales J, Vali L, Hoyle DV, Yates CM, Amyes SGB, McKendrick IJ.  2007.  The interaction between dam methylation sites and Xha1 restriction digest sites in Escherichia coli O157: H7 EDL933. Journal of Applied Microbiology. 102:820-825. Abstract
Andrews M, Raven JA, Sprent JI, Lea PJ.  2007.  Is shoot growth correlated to leaf protein concentration? Trends in Plant Science. 12:531-532. Abstract
Allcroft DJ, Glasbey CA, Paulo MJ.  2007.  A latent Gaussian model for multivariate consumption data. Food Quality and Preference. 18:508-516. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Cortet J, Andersen MN, Krogh PH.  2007.  Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
Avrova AO, Whisson SC, Pritchard L, Venter E, de Luca S, Hein I, Birch PRJ.  2007.  A novel, non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans. Microbiology. 153:747-759. Abstract
McCue KF, Allen PV, Shepherd LVT, Blake A, Maccree MM, Rockhold DR, Novy RG, Stewart D, Davies HV, Belknap WR.  2007.  Potato glycosterol rhamnosyltransferase, the terminal step in triose side-chain biosynthesis. Phytochemistry. 68:327-334. Abstract
Christie WW, Dobson G, Adlof RO.  2007.  A practical guide to the isolation, analysis and identification of conjugated linoleic acid. Lipids. 42:1073-1084. Abstract
Moran D, McVittie A, Allcroft DJ, Elston DA.  2007.  Quantifying public preferences for agri-environmental policy in Scotland: a comparison on methods. Ecological Economics. 63:42-53. Abstract
Albon SD, Brewer MJ, O'Brien S, Nolan AJ, Cope D.  2007.  Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44:1176-1187. Abstract
Krogh PH, Griffiths BS, Demsar D, Bohanec M, Debeljak M, Andersen MN, Sausse C, Birch ANE, Caul S, Holmstrup M et al..  2007.  Responses by earthworms to reduced tillage in herbicide tolerant maize and Bt maize cropping systems. Pedobiologia. 51:219-227. Abstract
Armstrong MR, Husmeier D, Phillips MS, Blok VC.  2007.  Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida. Journal of Molecular Evolution. 64:689-701. Abstract
Whisson SC, Boevink P, Moleleki LN, Avrova AO, Morales JG, Gilroy EM, Armstrong MR, Grouffaud S, van West P, Chapman S et al..  2007.  A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature. 450:115-118. Abstract
Chapman SJ, Campbell CD, Artz RRE.  2007.  Assessing CLPPs using MicroRespTM: a comparison with Biolog and other methods. Journal of Soils and Sediments. 7(6):406-410.
Coleby A, Aspinall PA, Miller DR.  2007.  Assessment of public acceptability regarding wind turbine construction as perceived by environmental professionals. Journal of Environmental Assessment Policy and Management. 9(1):45-65.
Tingem M, Rivington M, Azam-Ali S, Colls J.  2007.  Assessment of the ClimGen stochastic weather generator at Cameroon sites. African Journal of Environmental Science and Technology. 1:86-92.
Anderson IC, Bastias BA, Genney DR, Parkin PI, Cairney JWG.  2007.  Basidiomycete fungal communities in Australia sclerophyll forest soil are altered by repeated prescribed burning. Mycological Research. 111(4):482-486.
Chaudri A, McGrath S, Gibbs P, Chambers B, Carlton-Smith C, Godley A, Bacon J, Campbell CD, Aitken M.  2007.  Cadmium availability to wheat grain in soils treated with sewage sludge or metal salts. Chemosphere. 66(8):1415-1423.
Artz RRE, Anderson IC, Chapman SJ, Hagn A, Schloter M, Potts JM, Campbell CD.  2007.  Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands. Microbial Ecology. 54(3):508-522.
Izumi H, Moore ERB, Killham K, Alexander IJ, Anderson IC.  2007.  Characterisation of endobacterial communities in ectomycorrhizas by DNA and RNA based molecular methods. Soil Biology and Biochemistry. 39(4):891-899.
Anderson IC, Parkin PI.  2007.  Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules. Journal of Microbiological Methods. 68(2):248-253.
Bougoure PDSPI, Cairney JWG, Alexander IJ, Anderson IC.  2007.  Diversity of fungi in hair roots of Ericaceae varies along a vegetation gradient. Molecular Ecology. 16(21):4624-4636.
Newey SJ, Willebrand T, Haydon D, Dahl F, Aebischer N, Smith A, Thirgood SJ.  2007.  Do mountain hare populations cycle? Oikos. 116(9):1547-1557.
Fransson PMA, Anderson IC, Alexander IJ.  2007.  Does carbon partitioning in ectomycorrhizal pine seedlings under elevated CO2 vary with fungal species? Plant and Soil. 291(1-2):323-333.
Fransson PMA, Anderson IC, Alexander IJ.  2007.  Ectomycorrhizal fungi in culture respond differently to increased carbon availability. FEMS Microbiology Ecology. 61(2):246-257.
Anderson IC, Cairney JWG.  2007.  Ectomycorrhizal fungi: exploring the mycelial frontier. FEMS Microbiology Reviews. 31(4):388-406.
Saari TA, Saari SK, Campbell CD, Alexander IJ, Anderson IC.  2007.  FragMatch - a programme for the analysis of DNA fragment data. Mycorrhiza. 17(2):133-136.
Fomina M, Charnock JM, Hillier S, Alvarez R, Gadd GM.  2007.  Fungal transformations of uranium oxides. Environmental Microbiology. 9(7):1696-1710.
Sims M, Elston DA, Larkham AP, Nussey DH, Albon SD.  2007.  Identifying when weather influences life history traits of grazing herbivores. Journal of Animal Ecology. 76(4):761-770.
Aitkenhead MJ, Dyer R.  2007.  Improving land cover classification using recognition threshold neural networks. Photogrammetric Engineering and Remote Sensing. 73:413-421.
Miller J, Franklin J, Aspinall RJ.  2007.  Incorporating spatial dependence in predictive vegetation models. Ecological Modelling. 202(3-4):225-242.
Andrist-Rangel Y, Edwards AC, Hillier S, Oborn I.  2007.  Long-term K dynamics in organic and conventional mixed cropping systems as related to management and soil properties. Agriculture, Ecosystems and Environment. 122(4):413-426.
Cots-Folch R, Aitkenhead MJ, Martinez-Casasnovas JA.  2007.  Mapping land cover from detailed aerial photography data using textural and neural network analysis. International Journal of Remote Sensing. 28(7):1625-1642.
Cots-Folch R, Aitkenhead MJ, Martinez-Casasnovas JA.  2007.  Mapping land cover from detailed aerial photography data using textural and neural network analysis. International Journal of Remote Sensing. 28(7-8):1625-1642.
Aitkenhead MJ, Aitkenhead-Peterson JA, McDowell W, Smart RP, Cresser M.  2007.  Modelling doc export from catchments in Scotland using neural networks. Computers and Geosciences. 33:423-436.
Simonsson M, Andersson S, Andrist-Rangel Y, Hillier S, Mattsson L, Oborn I.  2007.  Potassium release and fixation as a function of fertilizer application rate and soil parent material. Geoderma. 140(1-2):188-198.
Albon SD, Brewer MJ, Nolan AJ, Cope D.  2007.  Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44(6):1176-1187.
Kay D, Aitken M, Crowther J, Dickson I, Edwards AC, Francis C, Hopkins M, Jeffrey W, Kay C, McDonald MDATD et al..  2007.  Reducing fluxes of faecal indicator compliance parameters to bathing waters from diffuse agricultural sources: The Brighouse Bay study, Scotland. Environmental Pollution. 147(1):138-149.
Paterson E, Gebbing T, Abel C, Sim A, Telfer G.  2007.  Rhizodeposition shapes rhizosphere microbial community structure in organic soil. New Phytologist. 173(3):600-610.
Bastias BA, Anderson IC, Xu Z, Cairney WG.  2007.  RNA- and DNA-based profiling of soil fungal communities in a native Australian eucalypt forest and adjacent Pinus elliotti plantation. Soil Biology and Biochemistry. 39(12):3108-3114.
Matthiopoulos J, Graham K, Smout S, Asseburg C, Redpath S, Thirgood SJ, Hudson P, Harwood J.  2007.  Sensitivity to assumptions in models of generalist predation on a cyclic prey. Ecology. 88(10):2576-2586.
Aherne J, Helliwell RC, Lilly A, Ferrier RC, Jenkins A.  2007.  Simulation of soil and surface water acidification: Divergence between one-box and two-box models? Applied Geochemistry. Special Issue on Acid Rain2005, 7th International Conference on Acid Deposition, June 12-17th 2005, Prague, Czech Republic.. 22(6):1167-1173.
Aitkenhead-Peterson JA, Smart RP, Aitkenhead MJ, Cresser MS, McDowell WH.  2007.  Spatial and temporal variation of dissolved organic carbon export from gauged and ungauged watersheds of Dee Valley, Scotland: Effect of land cover and C:N. Water Resources Research article no. W05442.. 43(5)
Kerlin D, Haydon D, Miller D, Aebischer N, Smith A, Thirgood SJ.  2007.  Spatial synchrony in red grouse population dynamics. Oikos. 116(12):2007-2016.
Garnier E, Ansquer P, Castro H, Cruz P, Dolezal J, Eriksson O, Fortunel C, Freitas H, Golodets C, Grigulis C et al..  2007.  A standardized methodology to assess the effects of land use change on plant traits, communities and ecosystem functioning in grasslands. Annals of Botany. 99(5):967-985.
Lutz E, Birkeland KW, Kronholm K, Hansen K, Aspinall RJ.  2007.  Surface hoar characteristics derived from a snow micropenetrometer using moving window statistical operations. Cold Regions Science and Technology. 47(1-2):118-133.
Howard BJ, Beresford NA, Gashchak S, Arkhipov A, Mayes RW, Caborn J, Stromann G, Wacker L.  2007.  The transfer of 239/240Pu to cow milk. Journal of Environmental Radioactivity. 98(1-2):191-204.
Dullinger S, Kleinbauer I, Pauli H, Gottfried M, Brooker RW, Nagy L, Theurillat JP, Holten JI, Abdaladze O, Benito JL et al..  2007.  Weak and variable relationships between environmental severity and small-scale co-occurrence in alpine plant communities. Journal of Ecology. 95(6):1284-1295.
Perez-Barberia FJ, Robertson E, Soriguer R, Aldezabal A, Mendizabal M.  2007.  Why polygynous ungulates segregate in space? Testing the activity budget hypothesis in Soay sheep Ecological Monographs. 77(4):631-647.
Gilbert L, Bulmer E, Arnold KE, Graves JA.  2007.  Yolk androgens and embryo sex: maternal effects of confounding factors? Hormones and Behavior. 51(2):231-238.
Bos JIB, Kanneganti T-D, Young C, Cakir C, Huitema E, Win J, Armstrong MR, Birch PRJ, Kamoun S.  2006.  The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant Journal. 48:165-176. Abstract
Sunley RJ, Atkinson CJ, Jones HG.  2006.  Chill unit models and recent changes in the occurrence of winter chill and spring frost in the United Kingdom. Journal of Horticultural Science & Biotechnology. 81:949-958. Abstract
Kikuchi T, Shibuya H, Aikawa T, Jones JT.  2006.  Cloning and characterization of pectate lyases expressed in the esophageal gland of the pine wood nematode Bursaphelenchus xylophilus. Molecular Plant-Microbe Interactions. 19:280-287. Abstract
Heckmann L, Griffiths BS, Caul S, Thompson J, Pusztai-Carey M, Moar, W.J, Andersen MN, Krogh PH.  2006.  Consequences for Protaphorura armata (Collembola: Onychiuridae) following exposure to genetically modified Bacillus thuringiensis (Bt) maize and non-Bt maize. Environmental Pollution. 142:212-216. Abstract
van Os H, Andrzejewski S, Bakker E, Barrena I, Bryan GJ, Caromel B, Ghareeb B, Isidore E, De Jong W, van Koert P et al..  2006.  Construction of a 10,000 marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and genomewide physical map. Genetics. 173:1075-1087. Abstract
Cortet J, Andersen MN, Caul S, Griffiths BS, Joffre R, Lacroix B, Sausse C, Thompson J, Krogh PH.  2006.  Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract
Syed NH, Sorensen AP, Antonise R, van de Wiel C, van der Linden CG, van't Westende W, Hooftman DAP, den Nijs HCM, Flavell AJ.  2006.  A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers. Theoretical and Applied Genetics. 112:517-527. Abstract
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui A, Zhan J, McDonald BA.  2006.  Differential selection on Rhynchosporium secalis during parasitic and saprophytic phases in the barley scald disease cycle. Phytopathology. 96:1214-1222. Abstract
Murillo-Amador B, Jones HG, Kaya C, Aguilar RL, Garcia-Hernandez JL, Troyo-Di E, Avila-Serrano NY, Rueda-Puente E.  2006.  Effects of foliar application of calcium nitrate on growth and physiological attributes of cowpea (Vigna unguiculata L.Walp.) grown under salt stress. Environmental and Experimental Botany. 58:188-196.
Blok VC, Chapman S, Armstrong MR, Phillips M, Lilley C, Urwin P, Blanchard A, Grenier E, Jones JT.  2006.  Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
Archer NAL, Jones HG.  2006.  Integrating hyperspectral imagery at different scales to estimate component surface temperatures. International Journal of Remote Sensing. 27:2141-2159. Abstract
H C, English LC, Halpin C, Andreux F, Hopkins DW.  2006.  Microbial community structure in soils with decomposing residues from plants with genetic modifications to lignin biosynthesis. FEMS Microbiology Letters. 263:68-75. Abstract
Begg GS, Hockaday S, McNicol JW, Askew M, Squire GR.  2006.  Modelling the persistence of volunteer oilseed rape (Brassica napus). Ecological Modelling. 198:195-207. Abstract
Tuomainen MH, Nunan N, Lehesranta SJ, Tervahauta AI, Hassinen VH, Schat H, Koistinen KM, Auriola S, McNicol JW, Karenlampi SO.  2006.  Multivariate analysis of protein profiles of metal hyperaccumulator Thlaspi caerulescens accessions. Proteomics. 6:3696-3706. Abstract
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui AH, Zhan J, McDonald BA.  2006.  Pathogen evolution in response to host resistance genes: Evidence from field experiments with Rhynchosporium secalis on barley. Phytopathology. 96:S2-S2.
McCue KF, Allen PV, Shepherd LVT, Blake A, Whitworth JL, Maccree MM, Rockhold DR, Stewart D, Davies HV, Belknap WR.  2006.  The primary in vivo steroidal alkaloid glucosyltransferase from potato. Phytochemistry. 67:1590-1597. Abstract
Andrews M, Raven JA, Lea PJ, Sprent JI.  2006.  A role for shoot protein in shoot-root dry matter allocation in higher plants. Annals of Botany. 97:3-10. Abstract
Hassall M, Adl S, Berg M, Griffiths BS, Scheu S.  2006.  Soil fauna-microbe interactions: towards a conceptual framework for research. European Journal of Soil Biology. 42:S54-S60. Abstract
Wall DH, Adams BJ, Barrett JE, Hopkins DW, Virginia RA.  2006.  A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica. Soil Biology & Biochemistry. 38:3001-3002. Abstract
Torrance L, Andreev I, Gabrenaite-Verhouskay R, Cowan GH, Makinen K, Taliansky ME.  2006.  An unusual structure at one end of potato potyvirus particles. Journal of Molecular Biology. 357:1-8.
Augustin NH, McNicol JW, Marriott CA.  2006.  Using the truncated auto-Poisson model for spatially correlated counts of vegetation. Journal of Agricultural Biological and Environmental Statistics. 11:1-23. Abstract
Graham MC, Farmer JG, Anderson P, Paterson E, Hillier SJ, Lumsdon DG, Bewley RJF.  2006.  Calcium polysulfide remediation of hexavalent chromium from chromite ore processing residue. The Science of the Total Environment. 364(1-3):32-44.
Redpath SM, Leckie F, Arroyo B, Amar A, Thirgood, S.J.; Redpath S.  2006.  Compensating for the costs of polygyny in hen harriers. Behavioural Ecology and Sociobiology. 60(3):386-391.
Ayres E, van der Wal R, Sommerkorn M, Bardgett R.  2006.  Direct uptake of soil nitrogen by mosses. Biology Letters. 2(2):286-288.
Izumi H, Anderson IC, Alexander IJ, Killham K, Moore ERB.  2006.  Diversity and expression of nitrogenase genes (nifH) from ectomycorrhizas of Corsican pine (Pinus nigra). Environmental Microbiology. 8(12):2224-2230.
Patra AK, Abbadie L, Clays-Josserand A, Degrange V, Grayston SJ, Guillaumaud N, Loiseau P, Louault F, Mahmood S, Nazaret S et al..  2006.  Effects of management regime and plant species on the enzyme activity and genetic structure of N-fixing, denitrifying and nitrifying bacterial communities in grassland soils. Environmental Microbiology. 8(6):1005-1016.
Thwaites RH, Ashmore MR, Morton AJ, Pakeman RJ.  2006.  The effects of tropospheric ozone on the species dynamics of calcareous grassland. Environmental Pollution. 144(2):500-509.
Izumi H, Anderson IC, Alexander IJ, Killham K, Moore ERB.  2006.  Endobacteria in some ectomycorrhiza of Scots pine (Pinus sylvestris). FEMS Microbiology Ecology. 56(1):34-43.
Harmel RD, Cooper RJ, Slade RM, Green CH, Haney RL, Arnold JG.  2006.  Error propagation in measured streamflow and water quality data for small rural watersheds. Transactions of the American Society of Agricultural Engineers. 49:689-701.
Genney GR, Anderson IC, Alexander IJ.  2006.  Fine scale distribution of pine ectomycorrhizas and their extramatrical mycelium. New Phytologist. 170(2):381-390.
Sutherland WJ, Armstrong-Brown S, Armsworth PR, Brereton T, Brickland J, Campbell CD, Chamberlain DE, Cooke AI, Dulvy NK, Dusic NR et al..  2006.  The identification of 100 ecological questions of high policy relevance in the UK. Journal of Applied Ecology. 43(4):617-627.
Gibbs PA, Chambers BJ, Chaudri AM, McGrath SP, Carlton-Smith CH, Bacon JR, Campbell CD, Aitken MN.  2006.  Initial results from a long-term, multi-site field study of the effects on soil fertility and microbial activity of sludge cakes containing heavy metals. Soil Use and Management. 22(1):11-21.
Young KR, Aspinall RJ.  2006.  Kaleidoscoping landscapes, shifting perspectives. Professional Geographer. 58(4):436-447.
Brown DG, Aspinall RJ, Bennett DA.  2006.  Landscape models and explanation in landscape ecology- A space for generative landscape science? Professional Geographer. 58(4):369-382.
Irvine RJ, Corbishley H, Pilkington JG, Albon SD.  2006.  Low level parasitic worm burdens reduce body condition in free ranging red deer (Cervus elaphus). Parasitology. 133(4):465-475.
Mills A, Morkel P, Runyoro V, Amiyo A, Borner M, Thirgood SJ.  2006.  Managing small populations in practice: black rhino in the Ngorongoro Crater, Tanzania. Oryx. 40(3):319-323.
Andrist-Rangel Y, Simonsson M, Andersson S, Oborn I, Hillier S.  2006.  Mineralogical budgeting of potassium in soil: a basis for understanding standard measures of reserve potassium. Journal of Plant Nutrition and Soil Science. 169:605-615.
Wright RF, Aherne J, Bishop K, Camarero L, Cosby BJ, Erlandsson M, Evans CD, Forsius M, Hardekopf H, Helliwell RC et al..  2006.  Modelling the effect of climate change on recovery of acidified freshwaters: relative sensitivity of individual processes in the MAGIC model. The Science of the Total Environment. 365(1-3):154-166.
Artz RRE, Avery LM, Jones DL, Davey L, Killham K.  2006.  Potential pitfalls in the quantitative molecular detection of escherichia coli O157:H7 in environmental matrices. Canadian Journal of Microbiology. 52(5):482-488.
Aitkenhead MJ, McDonald AJS.  2006.  The state of play in machine/environment interactions. Artificial Intelligence Review. 25:247-276.
Artz RRE, Chapman SJ, Campbell CD.  2006.  Substrate utilisation profiles of microbial communities in peat are depth-dependent and correlate with whole soil FTIR profiles. Soil Biology and Biochemistry. 38(9):2958-2962.
Guggenheim S, Adams JM, Bain DC, Bergaya F, Brigatti MF, Drits VA, Eberl DD, Formoso MLL, Galan E, Kogure T et al..  2006.  Summary of recommendations of nomenclature committees relevant to clay mineralogy: report of the Association Internationale pour l'Etude des Argiles (AIPEA) Nomenclature Committee for 2006. Clays and Clay Minerals. 54(6):761-772.
Loe LE, Irvine RJ, Bonenfant C, Stien A, Langvatn R, Albon SD, Mysterud A, Stenseth NC.  2006.  Testing five hypotheses of sexual segregation in an arctic ungulate. Journal of Animal Ecology. 75(2):485-496.
Duncan AJ, Rahman A, Miller DW, Frutos P, Gordon IJ, Rehman A, Baig A, Ali F, Wright IA.  2006.  Transhumance livestock production in the Northern Areas of Pakistan: nutritional inputs and productive outputs. Agriculture, Ecosystems and Environment. 117(2-3):195-204.
Singh BK, Nazaries L, Munro S, Anderson IC, Campbell CD.  2006.  Use of multiplex terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial community. Applied and Environmental Microbiology. 72(11):7278-7285.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.