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2008
Pollard SJT, Hough RL, Kim KH, Bellarby J, Paton G, Semple K, Coulon F.  2008.  Fugacity modelling to predict the distribution of organic contaminants in the soil: oil matrix of constructed biopiles. Chemosphere. 71(8):1432-1439.
Artz RRE, Chapman SJ, Siegenthaler A, Bortoluzzi E, YliPetays M, Francez AJ.  2008.  Functional microbial diversity in European remediating cutover peatlands is directed by labile carbon. Journal of Applied Ecology. 45(6):1799-1809.
Britton AJ, Fisher JM.  2008.  Growth responses of low-alpine dwarf-shrub heath species to nitrogen deposition and management. Environmental Pollution. 153(3):564-573.
Wakelin SA, Macdonald LM, Rogers SL, Gregg AL, Baldock JA, Bolger TP.  2008.  Habitat selective factors influencing the structural composition and functional capacity of microbial communities in agricultural soils. Soil Biology and Biochemistry. 40(3):803-813.
Babulo B, Muys B, Fredu N, Tollens E, Nyssen J, Deckers J, Mathijs E.  2008.  Household livelihood strategies and forest dependence in the highlands of Tigray, Northern Ethiopia. Agricultural Systems. 98:147-155.
Brooker RW, Kikvidze Z.  2008.  Importance: an overlooked concept in plant interaction research. Journal of Ecology. 96(4):703-708.
Keith AM, van der Wal R, Brooker RW, Osler GHR, Chapman SJ, Burslem DFRP, Elston DA.  2008.  Increasing litter diversity reduces variability in a decomposer system. Ecology. 89(9):2657-2664.
McNamara NP, Black HIJ, Pierce TG, Reay DS, Ineson P.  2008.  The influence of afforestation and tree species on soil methane fluxes from shallow organic soils at the UK Gisburn Forest Experiment. Soil Use and Management. 24(1):1-7.
Brown I, Towers W, Rivington M, Black HIJ.  2008.  The influence of climate change on agricultural land-use potential: adapting and updating the land capability system for Scotland. Climate Research. 37(1):43-57.
Britton AJ, Helliwell RC, Fisher JM, Gibbs S.  2008.  Interactive effects of nitrogen deposition and fire on plant and soil chemistry in an alpine heathland. Environmental Pollution. 156:409-416.
Dunn SM, Bacon JR, Soulsby C, Tetzlaff D, Stutter MI, Waldron S, Malcolm IA.  2008.  Interpretation of homogeneity in &18O signatures of stream water in a nested sub-catchment system in north east Scotland. Hydrological Processes. 22:4767-4782.
Bacon JR, Davidson CM.  2008.  Is there a future for sequential chemical extraction? Analyst. 132(1):25-46.
Rahman A, Duncan AJ, Miller DW, Clemens J, Frutos P, Gordon IJ, Rehman A, Baig A, Ali F, Wright IA.  2008.  Livestock feed resources, production and management in the agro-pastoral system of the Hindu Kush-Karakoram-Himalayan region of Pakistan: The effect of accessibility. Agricultural Systems. 96(1-3):26-36.
Campbell CD, Cameron CM, Bastias BA, Chen C, Cairney JWG.  2008.  Long term repeated burning in a wet sclerophyll forest reduces fungal and bacterial biomass and responses to carbon substrates. Soil Biology and Biochemistry. 40(9):2246-2252.
Buijs A, Fischer A, Rink D, Young JC.  2008.  Looking beyond superficial knowledge gaps: Understanding public representations of biological diversity. International Journal Biodiversity Science Management. 4(2):65-80.
Brown E, Aitkenhead MJ, Wright R, Aalders IH.  2008.  Mapping and classification of peatland on the Isle of Lewis using Landsat ETM+. Scottish Geographcial Journal. 123(3):173-192.
Fowler PA, Cassie S, Rhind BSMMJ, Collinson JM, Lea RG, Baker PJ, Bhattacharya S, O'Shaughnessy PJ.  2008.  Maternal smoking during pregnancy specifically reduces human fetal Desert hedgehog gene expression during testis development. Journal of Clinical Endocrinology and Metabolism. 93(2):619-626.
Eckersall PD, Lawson FP, Kyle CE, Waterston M, Bence L, Stear MJ, Rhind SM.  2008.  Maternal undernutrition and the ovine acute phase response to vaccination. BMC Veterinary Research, 4:1. 4(1)
Blackstock KL, White V, McCrum G, Scott A, Hunter C.  2008.  Measuring responsibility: an appraisal of a Scottish National Park's sustainable tourism indicators. Journal of Sustainable Tourism. 16(3):276-297.
Macleod CJA, Haygarth PM, Blackstock KL.  2008.  Mechanisms to improve integrative research at the science-policy interface for sustainable catchment management. Ecology and Society. 13(2):art48.
Belzunce-Segarra MJ, Prego R, Wilson MJ, Bacon J, Santos-Echeand J.  2008.  Method speciation in surface sediments of the Vigo Ria (NW Iberian Peninsula). Scientia Marina. 72:119-126.
Macdonald LM, Singh BK, Thomas N, Brewer M, Campbell CD, Dawson LA.  2008.  Microbial DNA profiling by multiplex terminal restriction fragment length polymorphism for forensic examination of soil evidence and the influence of sample condition. Journal Applied Microbiology. 105(3):813-821.
Singh BK, Macdonald CA, Campbell CD, Bacon J.  2008.  Multiple profiling of soil microbial communities identifies potential genetic markers of metal-enriched sewage sludge. FEMS Microbiology Ecology. 65:555-564.
Beale CM, Lennon JJ, Gimona A.  2008.  Opening the climate envelope reveals no macroscale associations with climate in European birds. Proceedings of the National Academy of Sciences, USA. 105:14908-14912.
Millard P, Midwood AJ, Hunt JE, Whitehead D, Boutton T.  2008.  Partitioning soil surface CO2 efflux into autotrophic and heterotrophic components, using natural gradients in soil &13C in an undisturbed savannah soil. Soil Biology and Biochemistry. 40(7):1575-1582.
Beugelsdijk DCM, van der Linde S, Zuccarello GC, den Bakker HC, Draisma SGA, Noordeloos ME.  2008.  A phylogenetic study of Boletus section Boletus in Europe. Persoonia. 20:1-7.
Chaudri A, McGrath S, Gibbs P, Chambers B, Carlton-Smith C, Bacon J, Campbell CD, Aitken M.  2008.  Population size of indigenous Rhizobium leguminosarum biovar trifolii in long-term field experiments with sewage sludge cake, metal-amended liquid sludge or metal salts: Effects of zinc, copper and cadmium. Soil Biology and Biochemistry. 40(7):1670-1680.
Lansade L, Bouissou MF, Erhard HW.  2008.  Reactivity to isolation and association with conspecifics: A temperament trait stable across time and situations. Applied Animal Behaviour Science. 109(2-4):355-373.
Nijnik M, Bizikova L.  2008.  Responding to the Kyoto Protocol through forestry: a comparison of opportunities for several countries in Europe. Forest Policy and Economics. 10(4):257-269.
Schmalenberger A, Hodge S, Bryant A, Hawkesford M, Singh B, Kertesz MA.  2008.  The role of Variovorax and other Comamonadaceae in sulphur transformations by microbial wheat rhizosphere communities exposed to different sulphur fertilization regimes. Environmental Microbiology. 10(6):1486-1500.
Guan Y, Waagepetersen R, Beale CM.  2008.  Second-order analysis of inhomogeneous spatial point processes with proportional intensity functions. Journal of American Statistical Association. 103(482):769-777.
Milne E, Williams S, Brye K, Easter M, Killian K, Paustian K.  2008.  Simulating soil organic carbon in a rice-soybean-wheat-soybean chronosequence in Prairie County, Arkansas using the Century model. Electronic Journal of Integrative Biosciences. 6(1):41-52.
Michelena P, Gautrais J, Gird JF, Bon R, Deneubourg JL.  2008.  Social cohesion in groups of sheep: Effect of activity level, sex composition and group size. Applied Animal Behaviour Science. 112(1-2):81-93.
Nielsen UN, Osler GHR, van der Wal R, Campbell CD, Burslem DFRP.  2008.  Soil pore volume and the abundance of soil mites in two contrasting habitats. Soil Biology and Biochemistry. 40(6):1538-1541.
Miller DG, Rivington M, Matthews KB, Buchan K, Bellocchi G.  2008.  Testing the spatial applicability of the Johnson-Woodward method for estimating solar radiation from sunshine duration data. Agriculture and Forest Meteorology. 148(3):466-480.
Thornton I, Farago ME, Thums CR, Parrish RR, McGill RAR, Breward N, Fortey NJ, Simpson P, Young SD, Tye AM et al..  2008.  Urban geochemistry: research strategies to assist risk assessment and remediation of brownfield sites in urban areas. Environmental Geochemistry and Health. 30:565-576.
Brown KM, Dilley R, Marshall K.  2008.  Using a head-mounted video camera to understand social worlds and experiences. Sociological Research Online. 13(6)
Polhill JG, Parker DC, Brown DG, Grimm V.  2008.  Using the ODD protocol for comparing three agent-based social simulation models of land use change. Journal of Artificial Societies and Social Simulation. 11(2):3.
Edouard N, Fleurance G, Martin-Rosset W, Duncan P, Dulphy JP, Grange S, Baumont R, Dubroeucq H, Perez-Barberia FJ, Gordon IJ.  2008.  Voluntary intake and digestibility in horses: effect of forage quality with emphasis on individual variability. Animal. 2(10):1526-1533.
Helliwell RC, Britton AJ, Gibbs S, Fisher JM.  2008.  Who put the N in PristiNe? Impacts of nitrogen enrichment in fragile mountain environments Mountain Research and Development. 28(3-4):210-215.
Matthews KB, Schwarz G, Buchan K, Rivington M, Miller DG.  2008.  Wither agricultural DSS? Computers and Electronics in Agriculture. 61(2):149-159.
2007
Navajas EA, Lambe NR, McLean KA, Glasbey CA, Fisher AV, Charteris AJL, B L, Simm G.  2007.  Accuracy of in vivo muscularity indices measured by computed tomography and their associaton with carcass quality in lambs. Meat Science. 75:533-542. Abstract
Kr E, Tups A, Archer ZA, Ross AW, Moar KM, Bell LM, Duncan JS, Mayer CD, Morgan PJ, Mercer JG et al..  2007.  Altered expression of SOCS3 in the hypothalamic arcuate nucleus during seasonal body mass changes in the field vole, Microtus agrestis. Journal of Neuroendocrinology. 19:83-94. Abstract
Bevan M, Waugh R.  2007.  Applying plant genomics to crop improvement. Genome Biology. 8:302-302. Abstract
Tetzlaff D, Waldron S, Brewer MJ, Soulsby C.  2007.  Assessing nested hydrological and hydrochemical behaviour of a mesoscale catchment using continuous tracer data. Journal of Hydrology. 336:430-443. Abstract
Swanston JS, Smith PL, Gillespie TL, Brosnan JM, Bringhurst TA, Agu RC.  2007.  Associations between grain characteristics and alcohol yield among soft wheat varieties. Journal of the Science of Food and Agriculture. 87:676-683. Abstract
Ravensdale M, Blom TJ, Gracia-Garza JA, Svircev AM, Smith RJ.  2007.  Bacteriophages and the control of Erwinia carotovora subsp. carotovora. Canadian Journal of Plant Pathology. 29:121-130.
Hukkanen AT, Kokko HI, Buchala AJ, McDougall GJ, Stewart D, K SO, Karjalainen RO.  2007.  Benzothiadiazole induces the accumulation of phenolics and improves resistance to powdery mildew in strawberries. Journal of Agricultural and Food Chemistry. 55:1862-1870. Abstract
Kim S-H, Ryabov EV, Kalinina N, Rakitina DV, Gillespie T, MacFarlane SA, Haupt S, Brown JWS, Taliansky ME.  2007.  Cajal bodies and the nucleolus are required for a plant virus systemic infection. EMBO Journal. 26:2169-2179. Abstract
Reavy B, Bagirova S, Chichkova NV, Fedoseeva SV, Kim S-H, Vartapetian AB, Taliansky ME.  2007.  Caspase-resistant VirD2 protein provides enhanced gene delivery and expression in plants. Plant Cell Reports. 26:1215-1219. Abstract
Mazzitelli L, Hancock RD, Haupt S, Walker PG, Pont SDA, McNicol JW, Cardle L, Morris J, Viola R, Brennan RM et al..  2007.  Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.. Journal of Experimental Botany. 58:1035-1045. Abstract
Bown JL, Pachepsky E, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 1: Model development and predicted patterns of diversity. Ecological Modelling. 207:264-276. Abstract
Pachepsky E, Bown JL, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 2: Linking diversity and function. Ecological Modelling. 207:277-285. Abstract
Sakvarelidze L, Tao Z, Bush M, Roberts GR, Leader DJ, Doonan JH, Rawsthorne S.  2007.  Coupling the GAL4 UAS system with alcR for versatile cell type-specific chemically inducible gene expression in Arabidopsis. Plant Biotechnology Journal. 5:465-476. Abstract
Beerling DJ, Hewitt CN, Pyle JA, Raven JA.  2007.  Critical issues in trace gas biogeochemistry and global change. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1629-1642. Abstract
van Nugteren I, Hein I, Berger DK.  2007.  Development of a virus-induced gene silencing system in pearl millet. South African Journal of Botany. 73:339-339. Abstract
Tzortzakakis EA, Blok VC.  2007.  Differentiation in two populations of Meloidogyne incognita from Greece in relation to reproduction on resistant tomato and pepper. Journal of Plant Diseases and Protection. 114:276-277. Abstract
El Zemrany H, Czarnes S, Hallett PD, Alamercery S, Bally R, Monrozier LJ.  2007.  Early changes in root characteristics of maize (Zea mays) following seed inoculation with the PGPR Azospirillum lipoferum CRT1. Plant and Soil. 291:109-118. Abstract
Ravirala RS, Barabote RD, Wheeler DM, Reverchon S, Tatum O, Malouf J, Liu H, Pritchard L, Hedley PE, Birch PRJ et al..  2007.  Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract
Cortet J, Griffiths BS, Bohanec M, Demsar D, Andersen MN, Caul S, Birch ANE, Pernin C, Tabone E, de Vaufleury A et al..  2007.  Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
Watanabe T, Broadley MR, Jansen S, White PJ, Takada J, Satake K, Takamatsu T, Tuah SJ, Osaki M.  2007.  Evolutionary control of leaf element composition in plants. New Phytologist. 174:516-523. Abstract
Zazzo A, Harrison SM, Bahar B, Moloney AP, Monahan FJ, Scrimgeour CM, Schmidt O.  2007.  Experimental determination of dietary carbon turnover in bovine hair and hoof. Canadian Journal of Zoology. 85:1239-1248. Abstract
Usher KM, Bergman B, Raven JA.  2007.  Exploring cyanobacterial mutualisms. Annual Review of Ecology Evolution and Systematics. 38:255-273. Abstract
de Vaufleury A, Kramarz P, Binet P, Cortet J, Caul S, Andersen MN, Plumey E, Coeurdassier M, Krogh PH.  2007.  Exposure and effects assessments of Bt maize on non-target organisms (gastropod, microarthropods, mycorrhizal fungi) in a semi-field microcosm experiment. Pedobiologia. 51:185-194. Abstract
White PJ, Bowen HC, Marshall B, Broadley MR.  2007.  Extraordinarily high leaf selenium to sulfur ratios define "Se-accumulator" plants. Annals of Botany. 100:111-118. Abstract
Butler A, Heffernan JE, Tawn JA, Flather RA, Horsburgh KJ.  2007.  Extreme value analysis of decadal variations in storm surge elevations. Journal of Marine Systems. 67:189-200. Abstract
Hein I, McLean K, Chalhoub B, Bryan GJ.  2007.  Generation and screening of a BAC library from a diploid potato clone to unravel durable late blight resistance on linkage group IV. International Journal of Plant Genomics. :-51421. Abstract
M C, Crosley LK, Nicol F, Beckett GJ, Howie AF, Hill KE, Horgan GW, Mathers JC, Arthur JR, Hesketh JE.  2007.  Genetic polymorphisms in the human selenoprotein P gene determine the response of selenoprotein markers to selenium supplementation in a gender-specific manner (the SELGEN study). FASEB Journal. 21:3063-3074. Abstract
Hopkins DW, Webster EA, Boerjan W, Pilate G, Halpin C.  2007.  Genetically modified lignin belowground. Nature Biotechnology. 25:168-169. Abstract
Lobley GE, Bremner DM, Holtrop G, Johnstone AM, Maloney C.  2007.  Impact of high protein diets with either moderate or low carbohydrate on weight loss, body composition, blood pressure and glucose tolerance in rats. British Journal of Nutrition. 97:1099-1108. Abstract
Belenguer A, Duncan SH, Holtrop G, Anderson SE, Lobley GE, Flint HJ.  2007.  Impact of pH on lactate formation and utilization by human fecal microbial communities. Applied and Environmental Microbiology. 73:6526-6533. Abstract
Kim S-H, MacFarlane SA, Kalinina NO, Rakitina DV, Ryabov E, Gillespie T, Haupt S, Brown JWS, Taliansky ME.  2007.  Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.
Rommens CM, Haring MA, Swords K, Davies HV, Belknap WR.  2007.  The intragenic approach as a new extension to traditional plant breeding. Trends in Plant Science. 12:397-403. Abstract
Gilroy EM, Hein I, van der Hoorn R, Boevink P, Venter E, McLellan H, Kaffarnik F, Hrubikova K, Shaw J, Holeva MC et al..  2007.  Involvement of cathepsin B in the plant disease resistance hypersensitive response. Plant Journal. 52:1-13. Abstract
Hancock RD, Walker PG, Pont SDA, Marquis N, Vivera S, Gordon SL, Brennan RM, Viola R.  2007.  L-Ascorbic acid accumulation in fruit of Ribes nigrum occurs by in situ biosynthesis via the L-galactose pathway. Functional Plant Biology. 34:1080-1091. Abstract
Latijnhouwers M, Gillespie T, Boevink P, Hawes C, Carvalho C.  2007.  Localisation and domain characterisation of Arabidopsis Golgin Candidates. Journal of Experimental Botany. 58:4373-4386. Abstract
Mickovski SB, Bengough AG, Bransby MF, Davies MCR, Hallett PD, Sonnenberg R.  2007.  Material stiffness, branching pattern, and soil water matric potential affect the pullout resistance of model root systems. European Journal of Soil Science. 58:1471-1481. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Cortet J, Andersen MN, Krogh PH.  2007.  Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
Gibson T, Blok VC, Phillips MS, Hong G, Kumarasinghe D, Riley IT, Dowton M.  2007.  The mitochondrial subgenomes of the nematode Globodera pallida are mosaics: Evidence of recombination in an animal mitochondrial genome. Journal of Molecular Evolution. 64:463-471. Abstract
Morris WL, Ducreux LJM, Bryan GJ, Taylor MA.  2007.  Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297. Abstract
Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al..  2007.  Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.
Matheson LA, Loren A, Hanton SL, Rossi M, Latijnhouwers M, Stefano G, Renna L, Brandizzi F.  2007.  Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the golgi matrix. Plant Physiology. 143:1615-1627.
Wilson MR, Foucaud L, Barlwo PG, Hutchison GR, Sales J, Simpson RJ, Stone V.  2007.  Nanoparticle interactions with zinc and iron: Implications for toxicology and inflammation. Toxicology and Applied Pharmacology. 225:80-89. Abstract
Dietrich C, Miller J, McKenzie G, Palkovics L, Bal E, Palukaitis P, Maiss E.  2007.  No recombination detected between potyvirus mixed infections and between potyvirus derived transgenes and heterologous challenging potyviruses. Environmental Biosafety Research. 6:207-218. Abstract
Avrova AO, Whisson SC, Pritchard L, Venter E, de Luca S, Hein I, Birch PRJ.  2007.  A novel, non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans. Microbiology. 153:747-759. Abstract
Graham NS, Broadley MR, Hammond JP, White PJ, May ST.  2007.  Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics. 8:-344. Abstract
McCue KF, Allen PV, Shepherd LVT, Blake A, Maccree MM, Rockhold DR, Novy RG, Stewart D, Davies HV, Belknap WR.  2007.  Potato glycosterol rhamnosyltransferase, the terminal step in triose side-chain biosynthesis. Phytochemistry. 68:327-334. Abstract
Bohanec M, Cortet J, Griffiths BS, Znidarsic M, Debeljak M, Caul S, Thompson J, Krogh PH.  2007.  A qualitative multi-attribute model for assessing the impact of cropping systems on soil quality. Pedobiologia. 51:239-250. Abstract
Albon SD, Brewer MJ, O'Brien S, Nolan AJ, Cope D.  2007.  Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44:1176-1187. Abstract
Krogh PH, Griffiths BS, Demsar D, Bohanec M, Debeljak M, Andersen MN, Sausse C, Birch ANE, Caul S, Holmstrup M et al..  2007.  Responses by earthworms to reduced tillage in herbicide tolerant maize and Bt maize cropping systems. Pedobiologia. 51:219-227. Abstract
Mitchell A, Oommen M, Bhatia P, Scott P, Robertson ZC, Stewart D, McDougall GJ, Wallace HM.  2007.  Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract
Armstrong MR, Husmeier D, Phillips MS, Blok VC.  2007.  Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida. Journal of Molecular Evolution. 64:689-701. Abstract
Begg GS, Cullen DW, Iannetta PPM, Squire GR.  2007.  Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots. Transgenic Research. 16:51-63. Abstract
Bohan DA, Hawes C, Haughton AJ, Denholm I, Champion GT, Perry JN, Clark SJ.  2007.  Statistical models to evaluate invertebrate-plant trophic interactions in arable systems. Bulletin of Entomological Research. 97:265-280. Abstract
Krivtsov V, Garside A, Brendler A, Liddell K, Griffiths BS, Staines HJ.  2007.  A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology. 57:467-484. Abstract
Broadley MR, White PJ, Hammond JP, Zelko I, Lux A.  2007.  Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ.  2007.  Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Traffic. 8:21-31. Abstract
Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ.  2007.  Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Addendum. Plant Signaling & Behaviour. 2:180-181. Abstract
Hackett CA, Milne I, Bradshaw JE, Luo ZW.  2007.  TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract
Harrison SM, Monahan FJ, Zazzo A, Bahar B, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Three-dimensional growth of bovine hoof as recorded by carbon stable isotope ratios. Rapid Communications in Mass Spectrometry. 21:3971-3976. Abstract
van den Berg N, Berger DK, Hein I, Birch PRJ, Wingfield MJ, Viljoen A.  2007.  Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology. 8:333-341. Abstract
Whisson SC, Boevink P, Moleleki LN, Avrova AO, Morales JG, Gilroy EM, Armstrong MR, Grouffaud S, van West P, Chapman S et al..  2007.  A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature. 450:115-118. Abstract
Morris WL, Ross HA, Ducreux LJM, Bradshaw JE, Bryan GJ, Taylor MA.  2007.  Umami compunds are a determinant of the flavor of potato (Solanum tuberosum L.).. Journal of Agricultural and Food Chemistry. 55:9627-9633. Abstract
Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell AJ, Leroy P, Morgante M, Panaud O, Paux E et al..  2007.  A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics. 8:973-982. Abstract
Harrison SM, Zazzo A, Bahar B, Monahan FJ, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Using hooves for high-resolution isotopic reconstruction of bovine dietary history. Rapid Communications in Mass Spectrometry. 21:479-486. Abstract
Iannetta PPM, Begg GS, Hawes C, Young MW, Russell JR, Squire GR.  2007.  Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
Loe LE, Bonenfant C, Mysterud A, Severinsen T, Oritsland N, Langvatn R, Stien A, Irvine RJ, Stenseth N.  2007.  Activity pattern of arctic reindeer in a predator-free environment - no need to keep a daily rhythm. Oecologia. 152(4):617-624.
Wright AJ, Soto NA, Baldwin AL, Bateson M, Beale CM, Clark C, Deak T, Edwards EF, Fernandez A, Godinho A et al..  2007.  Anthropogenic noise as a stressor in animals: a multidisciplinary perspective. International Journal of Comparative Psychology. 20:250-273.
Bacon JR, Linge KL, Parrish RR, van Vaeck L.  2007.  Atomic spectrometry update: atomic mass spectrometry. Journal of Analytical Atomic Spectrometry. 22(8):973-1006.
Anderson IC, Bastias BA, Genney DR, Parkin PI, Cairney JWG.  2007.  Basidiomycete fungal communities in Australia sclerophyll forest soil are altered by repeated prescribed burning. Mycological Research. 111(4):482-486.
Chaudri A, McGrath S, Gibbs P, Chambers B, Carlton-Smith C, Godley A, Bacon J, Campbell CD, Aitken M.  2007.  Cadmium availability to wheat grain in soils treated with sewage sludge or metal salts. Chemosphere. 66(8):1415-1423.
Bradford MA, Tordoff GM, Black HIJ, Cook R, Eggers T, Garnett MH, Grayston SJ, Hutcheson KA, Ineson P, Newington JE et al..  2007.  Carbon dynamics in a model grassland with functionally different soil communities. Functional Ecology. 21(4):690-697.
Foereid B, Barthram GT, Marriott CA.  2007.  The CENTURY model failed to simulate soil organic matter development in an acidic grassland. Nutrient Cycling in Agroecosystems. 78(2):143-153.
Belzunce-Segarra MJ, Szefer P, Wilson MJ, Bacon J, Bolalek J.  2007.  Chemical forms and distribution of heavy metals in core sediments from the Gdansk Basin, Baltic Sea. Polish Journal of Environmental Studies. 16:505-515.
Brooker RW, Young JC, Watt AD.  2007.  Climate change and biodiversity: impacts and policy development challenges - a European case study. International Journal of Biodiversity Science and Management. 3:12-30.
Smith P, Chapman SJ, Scott WA, Black HIJ, Wattenbach M, Milne R, Campbell CD, Lilly A, Ostle N, Levey P et al..  2007.  Climate change cannot be entirely responsible for soil carbon loss observed in England and Wales, 1978-2003. Global Change Biology. 13(12):2605-2609.
Robinson DT, Brown DG, Parker DC, Schreinemachers P, Janssen MA, Huigen M, Wittmer H, Gotts NM, Promburom P, Irwin E et al..  2007.  Comparison of empirical methods for building agent-based models in land use science. Journal of Land Use Science. 2(1):31-55.
Marrs RH, Galtress K, Tong C, Cox ES, Blackbird SJ, Heyes TJ, Pakeman RJ, Le Duc MG.  2007.  Competing conservation goals, biodiversity or ecosystem services : element losses and species recruitment in a managed moorland bracken model system. Journal of Environmental Management. 85(4):1034-1047.
Bown JL, Pachepsky E, Eberst A, Bausenwein U, Millard P, Squire G, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities. I: Model development and predicted patterns of diversity. Ecological Modelling. 207(2-4):264-276.
Pachepsky E, Bown JL, Eberst A, Bausenwein U, Millard P, Squire G, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities. II Linking diversity and function. Ecological Modelling. 207(2-4):277-285.
Paoletti, M.G, Osler GHR, Kinnear A, Black DG, Thomson LJ, Tsitsilas A, Sharley D, Judd S, Neville P et al..  2007.  Detritivores as indicators of landscape stress and soil degradation. Australian Journal of Experimental Agriculture. 47(4):412-423.
Blackstock KL, Kelly GJ, Horsey BL.  2007.  Developing and applying a framework to evaluate participatory research for sustainability. Ecological Economics. 60(4):726-742.
Jude SR, Jones AP, Watkinson AR, Brown I, Gill JA.  2007.  The development of a visualization methodology for integrated coastal management. Coastal Management. 35(5):525-544.
Bougoure PDSPI, Cairney JWG, Alexander IJ, Anderson IC.  2007.  Diversity of fungi in hair roots of Ericaceae varies along a vegetation gradient. Molecular Ecology. 16(21):4624-4636.
Wright AJ, Soto NA, Baldwin AL, Bateson M, Beale CM, Clark C, Deak T, Edwards EF, Fernandez A, Godinho A et al..  2007.  Do marine mammals experience stress related to anthropogenic noise? International Journal of Comparative Psychology. 20:250-273.
Prosser JI, Bohannan BJM, Curtis TP, Ellis RJ, Firestone MK, Freckleton RP, Green JL, Green LE, Killham K, Lennon JJ et al..  2007.  Essay - The role of ecological theory in microbial ecology. Nature Reviews Microbiology. 5(5):384-392.
Fiorini S, Tagarelli G, Boattini A, Luiselli D, Piro A, Tagarelli A, Pettener D.  2007.  Ethnicity and evolution of the biodemographic structure of Arbereshe and Italian populations of the Pollino Area, Southern Italy (1820-1984). American Anthropologist. 109(4):735-746.
Blackstock KL, Richards C.  2007.  Evaluating stakeholder involvement in river basin planning: a Scottish case study. Water Policy. 9(5):493-512.
Veiberg V, Mysterud A, Langvatn R, Loe LE, Irvine RJ, Bonenfant C, Couweleers F, Stenseth N.  2007.  Evidence for a trade-off between early growth and tooth wear in Svalbard reindeer. Journal of Animal Ecology. 76(6):1139-1148.
Wadham JL, Cooper RJ, Tranter M, Bottrell S.  2007.  Evidence for widespread anoxia in the proglacial zone of an Arctic glacier. Chemical Geology. 243(1-2):1-15.
Hillier S, Lumsdon DG, Brydson R, Paterson E.  2007.  Hydrogarnet: a host phase for Cr(VI) in chromite ore processing residue (COPR) and other high pH wastes. Environmental Science and Technology. 41(6):1921-1927.
Broos K, Macdonald LM, Warne MSJ, Heemsbergen DA, Barnes MB, Bell M, McLaughlin MJ.  2007.  Limitations of field soil microbial biomass measures. Soil Biology and Biochemistry. 39(10):2693-2695.
Reeves AD, Kirk EA, Blackstock KL.  2007.  The limitations of regulatory science in the effective control of diffuse pollution. Law, Science and Policy. 3:123-156.
Kelly GJ, Blackstock KL, Horsey BL.  2007.  Limits to learning for developing a sustainable region: lessons from north east Queensland. Australisian Journal of Environmental Management. 14(4):231-242.
Hyatt M, Gopalakrishnan GS, Bispham J, Gentili S, McMillen IC, Rhind SM, Rae MT, Kyle CE, Brooks AN, Jones C et al..  2007.  Maternal nutrient restriction in early pregnancy programmes hepatic mRNA expression of growth related genes and liver size in adult male sheep. Journal of Endocrinology. 192(1):87-97.
Brooker RW, Travis JMJ, Clark EJ, Dytham C.  2007.  Modelling species' range shifts in a changing climate: The impacts of biotic interactions, dispersal distance and the rate of climate change. Journal of Theoretical Biology. 245(1):59-65.
Futter MN, Butterfield D, Cosby BJ, Dillon PJ, Wade AJ, Whitehead PJ.  2007.  Modelling the mechanisms that control in-stream dissolved organic carbon dynamics in upland and forested catchments. Water Resources Research, W02424.. 43(2):W02424.
Britton AJ, Fisher JM.  2007.  NP stoichiometry of low-alpine heathland: usefulness for bio-monitoring and prediction of pollution impacts. Biological Conservation. 138(1-2):100-108.
Blackstock KL, Carter CE.  2007.  Operationalising sustainability science for a sustainability directive? Reflecting on three pilot projects Geographical Journal. 173(4):343-357.
Scalenghe EERAC, Barberis E.  2007.  Phosphorus loss in overfertilized soils: The selective P partitioning and redistribution between particle size separates. European Journal of Agronomy. 27(1):72-80.
Albon SD, Brewer MJ, Nolan AJ, Cope D.  2007.  Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44(6):1176-1187.
Walker KJ, Warman EA, Bhogal A, Cross RB, Pywell RF, Meek WR, Chambers BJ, Pakeman RJ.  2007.  Recreation of lowland heathland on ex-arable land: assessing the limiting processes on two sites with contrasting soil fertility and pH. Journal of Applied Ecology. 44(3):573-582.
Beale CM, Lennon JJ, Elston DA, Brewer MJ, Yearsley JM.  2007.  Red herrings remain in geographical ecology: a reply to Hawkins et al. (2007). Ecography. 30:845-847.
Pedersen ML, Friberg N, Skriver J, Baattrup-Pedersen A, Larsen SE.  2007.  Restoration of Skjern River and its valley: short-term effects on river habitats, macrophytes and macroinvertebrates. Ecological Engineering. 30(2):145-156.
Paquette SR, Behncke SM, O'Brien SH, Brenneman RA, Louis EE, Lapointe FJ.  2007.  Riverbeds demarcate distinct conservation units of the radiated tortoise (Geochelone radiata) in southern Madagascar. Conservation Genetics. 8(4):797-807.
Bastias BA, Anderson IC, Xu Z, Cairney WG.  2007.  RNA- and DNA-based profiling of soil fungal communities in a native Australian eucalypt forest and adjacent Pinus elliotti plantation. Soil Biology and Biochemistry. 39(12):3108-3114.
Jensen OP, Barbara BJ, Magnuson JJ, Card VM, Futter MN, Soranno PA, Stewart KM.  2007.  Spatial analysis of ice phenology trends across the Laurentian Great Lakes region during a recent warming period. Limnology and Oceanography. 52:2013-2026.
Gaston KJ, Davies RC, David C, Orme L, Olson VA, Thomas GH, Ding TS, Rasmussen PC, Lennon JJ, Bennett PM et al..  2007.  Spatial turnover in the global avifauna. Proceedings of the Royal Society of London, B. 274(1618):1567-1574.
Lutz E, Birkeland KW, Kronholm K, Hansen K, Aspinall RJ.  2007.  Surface hoar characteristics derived from a snow micropenetrometer using moving window statistical operations. Cold Regions Science and Technology. 47(1-2):118-133.
Steffan-Dewenter I, Kessler M, Barkmann J, Bos MM, Buchori D, Erasmi S, Faust H, Gerold G, Glenk K, Gradstein SR et al..  2007.  Tradeoffs between income, biodiversity, and ecosystem functioning during tropical rainforest conversion and agroforestry intensification. Proceedings of the National Academy of Sciences of the United States of America. 104(12):4973-4978.
Howard BJ, Beresford NA, Gashchak S, Arkhipov A, Mayes RW, Caborn J, Stromann G, Wacker L.  2007.  The transfer of 239/240Pu to cow milk. Journal of Environmental Radioactivity. 98(1-2):191-204.
Howard BJ, Beresford NA, Mayes RW, Lamb CS, Barnett CL.  2007.  The transfer of different forms of 35S to goat milk. Journal of Environmental Radioactivity. 98(1-2):177-190.
Beresford NA, Mayes RW, Barnett CL, Howard BJ.  2007.  The transfer of radiocaesium to ewes through a breeding cycle - an illustration of the pitfalls of the transfer coefficient. Journal of Environmental Radioactivity. 98(1-2):24-35.
Beresford NA, Howard BJ, Mayes RW, Lamb CS.  2007.  The transfer of radionuclides from saltmarsh vegetation to sheep tissues and milk. Journal of Environmental Radioactivity. 98(1-2):36-49.
Williams DL, Goddard PJ, Brancker WM.  2007.  Ultrasonographic examination of ocular lesions in farmed halibut. Veterinary Journal. 173(2):456-458.
Kirk EA, Reeves AD, Blackstock KL.  2007.  Understanding environmental regulation: disciplinary interactions and path dependency. Environment and Planning C. 25:250-268.
Brown KM.  2007.  Understanding the materialities and moralities of property: reworking collective claims to land. Transactions of the Institute of British Geographers. 32(4):507-522.
Brewer MJ, Nolan AJ.  2007.  Variable smoothing in Bayesian intrinsic autoregressions. Environmetrics. 18(8):841-857.
Dullinger S, Kleinbauer I, Pauli H, Gottfried M, Brooker RW, Nagy L, Theurillat JP, Holten JI, Abdaladze O, Benito JL et al..  2007.  Weak and variable relationships between environmental severity and small-scale co-occurrence in alpine plant communities. Journal of Ecology. 95(6):1284-1295.
Gilbert L, Bulmer E, Arnold KE, Graves JA.  2007.  Yolk androgens and embryo sex: maternal effects of confounding factors? Hormones and Behavior. 51(2):231-238.
2006
Johnson SN, Birch ANE, Gregory PJ, Murray PJ.  2006.  The 'mother knows best' principle: should soil insects be included in the preference-performance debate? Ecological Entomology. 31:395-401. Abstract
Hamilton K, Barfoot J, Crawford KE, Simpson CG, Beaumont PC, Bownes M.  2006.  Amplification of chloroplast DNA using the polymerase chain reaction (PCR): a practical activity for secondary school students. Journal of Biological Education. 40:172-177. Abstract
Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A et al..  2006.  An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics. 6:202-211. Abstract
Rostoks N, Schmierer D, Mudie S, Drader T, Brueggeman R, Caldwell DG, Waugh R, Kleinhofs A.  2006.  Barley necrotic locus nec1 encodes the cyclic nucleotide-gated ion channel 4 homologous to the Arabidopsis HLM1. Molecular Genetics and Genomics. 275:159-168. Abstract
Hamza O, Bengough AG, Bransby MF, Davies MCR, Hallett PD.  2006.  Biomechanics of plant roots: estimating localised deformation with particle image velocimetry. Biosystems Engineering. 94:119-132. Abstract
Bos JIB, Kanneganti T-D, Young C, Cakir C, Huitema E, Win J, Armstrong MR, Birch PRJ, Kamoun S.  2006.  The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant Journal. 48:165-176. Abstract
Gregory AS, Whalley WR, Watts CW, Bird NRA, Hallett PD, Whitmore AP.  2006.  Calculation of the compression index and precompression stress from soil compression test data. Soil and Tillage Research. 89:45-57. Abstract
Nuopponen M, Wikberg HI, Birch GM, J A-S, Maunu SL, Vuorinen T, Stewart D.  2006.  Characterization of 25 tropical hardwoods with Fourier transform infrared,ultraviolet resonance Raman and 13C cross-polarisation magic-angle spinning NMR spectroscopy. Journal of Applied Polymer Science. 102:810-819. Abstract
Raven JA, Beardall J.  2006.  Chorophyll fluorescence and ecophysiology: seeing red? New Phytologist. 169:449-451. Abstract
Toth IK, Pritchard L, Birch PRJ.  2006.  Comparative genomics reveals what makes an enterobacterial plant pathogen. Annual Review of Phytopathology. 44:305-336. Abstract
Luo ZW, Zhang Z, Leach L, Zhang RM, Bradshaw JE, Kearsey MJ.  2006.  Constructing genetic linkage maps under a tetrasomic model. Genetics. 172:2635-2645. Abstract
van Os H, Andrzejewski S, Bakker E, Barrena I, Bryan GJ, Caromel B, Ghareeb B, Isidore E, De Jong W, van Koert P et al..  2006.  Construction of a 10,000 marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and genomewide physical map. Genetics. 173:1075-1087. Abstract
Bradshaw JE, Hackett CA, Lowe R, McLean K, Stewart HE, Tierney I, Vilaro MDR, Bryan GJ.  2006.  Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tubersoum subsp. tuberosum). Theoretical and Applied Genetics. 113:943-951. Abstract
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui A, Zhan J, McDonald BA.  2006.  Differential selection on Rhynchosporium secalis during parasitic and saprophytic phases in the barley scald disease cycle. Phytopathology. 96:1214-1222. Abstract
Button DK, Gartland KMA, Ball LD, Natanson L, Gartland JS, Lyon GD.  2006.  DRASTIC-INSIGHTS: Querying information in a plant gene expression database. Nucleic Acids Research. 34:D712-D716. Abstract
Krivtsov V, Bezginova T, Salmond R, Liddell K, Garside A, Thompson J, Palfreyman JW, Staines HJ, Brendler A, Griffiths BS et al..  2006.  Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland. Forestry. 79:201-216. Abstract
Krivtsov V, Garside A, Bezginova T, Thompson J, Palfreyman JW, Salmond R, Liddell K, Brendler A, Griffiths BS, Watling R et al..  2006.  Ecological study of the forest litter meiofauna of a unique Scottish woodland. Animal Biology. 56:69-93. Abstract
Boag B, Neilson R, Scrimgeour CM.  2006.  The effect of starvation on the planarian Arthurdendyus triangulatus (Tricladida: Terricola) as measured by stable isotopes. Biology and Fertility of Soils. 43:267-270. Abstract
Firbank LG, Rothery P, May MJ, Clark SJ, Scott RJ, R.C. S, Boffey CWH, Brooks DR, Champion GT, Haughton AJ et al..  2006.  Effects of genetically modified herbicide-tolerant cropping systems on weed seedbanks in two years of following crops. Biology Letters. 2:140-143. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.