Publications list
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The enigma of soil animal species diversity revisited: the role of small-scale heterogeneity. PLoS ONE. 5(7):e11567.
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2010.
Environmental myopia: a diagnosis and a remedy. Trends in Ecology and Evolution. 25(10):556-561.
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2010.
Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties. Climate Research. 45:179-192.
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2010.
Estimating changes in Scottish soil carbon stocks using ECOSSE. II. Application. Climate Research. 45:179-192.
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2010.
Foetal hypothalamic and pituitary expression of GnRH and galanin systems is disturbed by exposure to sewage sludge chemicals via maternal ingestion. Journal of Neuroendocrinology. 22(6):527-533.
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2010.
The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.
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2010.
How important is plot relocation accuracy when interpreting re-visitation studies of vegetation change? Plant Ecology and Diversity. 3(1):1-8.
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2010.
How old is the streamwater? Open questions in catchment transit time conceptualization, modelling and analysis Hydrological Processes. 24(12):1745-1754.
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2010.
Hydrological connectivity and microbiological fluxes in montane catchments: the role of seasonality and climatic variability. Hydrological Processes. 24(9):1231-1235.
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2010.
The identification of priority opportunities for UK nature conservation policy. Journal of Applied Ecology. 47(5):955-965.
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2010.
Impacts of residence time during storage on potential of water saving for grey water recycling system. Water Research. 44(1):267-277.
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2010.
Inferring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5(6):451-464.
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2010.
Influence of prenatal nutrition and obesity on tissue specific fat mass and obesity-associated (FTO) gene expression. Reproduction. 139(1):265-274.
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2010.
The influence of vegetation type, soil properties and precipitation on the composition of soil mite and microbial communities at the landscape scale. Journal of Biogeography. 37(7):1317-1328.
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2010.
Integrating soil quality changes to arable agricultural systems following organic matter addition, or adoption of a ley-arable rotation. Applied Soil Ecology. 46(1):43-53.
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2010.
Interactions among agricultural production and other ecosystem services delivered from European temperate grassland systems. Advances in Agronomy. 109:117-154.
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2010.
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2010.
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2010.
Livestock predation in the Bale Mountains, Ethiopia. African Journal of Ecology. 48(4):1076-1082.
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2010.
Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
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2010.
Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nature Reviews Microbiology. 8(11):779-790.
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2010.
Moving together: Incidental leaders and naive followers. Behavioural Processes. 83(3):225-241.
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2010.
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2010.
Nodulation and nitrogen fixation by mimosa spp. In the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186(4):934-946.
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2010.
The ODD protocol for describing individual-based and agent-based models: A first update. Ecological Modelling. 221(23):2760-2768.
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2010.
Palatability mapping: a koala's eye view of spatial variation in habitat quality. Ecology. 91(11):3165-3176.
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2010.
Participatory wildlife surveys in communal lands: a case study from Simanjiro, Tanzania. African Journal of Ecology. 8(3):727-735.
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2010.
Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). Journal of Animal Ecology. 79(2):414-425.
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2010.
Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils. Nature Genetics. 42:260-U42.
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2010.
Process-based principles for restoring river ecosystems. BioScience. 60(3):209-222.
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2010.
Quantification of effects of season and nitrogen supply on tree belowground carbon transfer. New Phytologist. 187(2):485-493.
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2010.
Quantifying the contribution of soil organic matter turnover to forest soil respiration using natural abundance delta 13C. Soil Biology and Biochemistry. 42(6):935-943.
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2010.
Raising the bar? The challenge of evaluating the outcomes of environmental modelling and software Environmental Modelling and Software. 26(3):247-257.
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2010.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.
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2010.
Revealing ecological networks using Bayesian network inference algorithms. Ecology. 91(7):1892-1899.
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2010.
Rock building fungi. Geomicrobiology Journal. 27(6-7):624-629.
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2010.
Root-shoot growth responses during interspecific competition quantified using allometric modelling. Annals of Botany. 106(6):921-926.
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2010.
Simulation scenarios of spatio-temporal arrangement of crops at the landscape scale. Environmental Modelling and Software. 25(12):1881-1889.
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2010.
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2010.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.
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2010.
Terricolous alpine lichens are sensitive to both load and concentration of applied nitrogen and have potential as bioindicators of nitrogen deposition. Environmental Pollution. 158(5):1296-1302.
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2010.
Towards a more exact definition of the importance of competition - a reply to Freckleton et al. (2009). Journal of Ecology. 98(4):719-724.
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2010.
Towards a simple dynamic process conceptualization in rainfall runoff models using multi-criteria calibration and tracers in temperate, upland catchments. Hydrological Processes.. 24(3):260-275.
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2010.
Transit time distributions of a conceptual model: their characteristics and sensitivities. Hydrological Processes. 24(12):1719-1729.
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2010.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
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2010.
Uncertainty evaluation of mass discharge estimates from a contaminated site using a fully Bayesian framework. Water Resources Research. 46(W12552)
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2010.
Understanding and influencing behaviour change by farmers to improve water quality. The Science of the Total Environment. Published online. 408(23):5631-5638.
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2010.
Understanding the cognitive basis for human-wildlife relationships. International Journal of Sociology. 40:104-123.
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2010.
Validation of biophysical models: issues and methodologies. A review. Agronomy for Sustainable Development.. 30(1):109-130.
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2010.
Validation of biophysical models: issues and methodologies: a review. In: Sustainable Farming Systems, Springer Sciencce. 30:109-130.
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2010.
Analysis of anthocyanin composition and content contained from grains of the Korean purple rice varieties by liquid chromatography with diode array detection and electrospray ionization/mass spectrometry (LC-DAD-ESI/MS). Korean Journal of International Agriculture. 22:267-272.
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2010.
Ancient class of translocated oomycete effectors targets the host nucleus. Proceedings of the National Academy of Sciences, USA. 107:17421-17426.
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2010.
Ascorbic acid content of blackcurrant fruit is influenced by both genetic and enviromental factors. Functional Plant Science and Biotechnology. 4:40-52.
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2010.
Automated saccharification assay for determination of digestibility in plant materials. Biotechnology for Biofuels. 3:-23.
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2010.
BAX INHIBITOR-1 is required for full susceptibility of barley to powdery mildew. Molecular Plant-Microbe Interactions. 23:1217-1227.
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2010.
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2010.
A Brassica exon array for whole-transcript gene expression profiling. PLoS One. 5:-e12812.
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2010.
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2010.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
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2010.
Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.). BMC Plant Biology. 10:-202.
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2010.
Centrifuge modelling of soil slopes reinforced with vegetation. Canadian Geotechnical Journal. 47:1415-1430.
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2010.
Cereal landraces for sustainable agriculture. A review (Review). Agronomy for Sustainable Development. 30:237-269.
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2010.
Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.
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2010.
Combining plant resistance and a natural enemy to control Amphorophora idaei. BioControl. 55:321-327.
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2010.
Competition for land. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 365:2941-2957.
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2010.
A critical review of current methods in earthworm ecology: From individuals to populations (Review). European Journal of Soil Biology. 46:67-73.
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2010.
The dark side of the mycorrhiza. Plant Signaling & Behavior. 5:1019-1021.
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2010.
The demography of feral alfalfa (Medicago sativa L.) populations occurring in road side habitats in southern Manitoba Canada: Implications for novel trait confinement. Environmental Science and Pollution Research. 17:1448-1459.
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2010.
Detection of lactobacillic acid in low erucic rapeseed oil - A note of caution when quantifying cyclic fatty acid monomers in vegetable oils. Chemistry and Physics of Lipids. 163:698-702.
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2010.
Developing a reliable strategy to infer the effective soil hydraulic properties from field evaporation experiments for agro-hydrological models. Agricultural Water Management. 97:399-409.
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2010.
Development of diagnostic markers for use in breeding potatoes resistance to Globodera pallida pathotype Pa2/3 using germplasm derived from Solanum tuberosum ssp. andigena CPC 2802. Theoretical and Applied Genetics. 120:679-689.
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2010.
Does light exposure make plant litter more degradable? Plant and Soil. 333:275-285.
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2010.
Eats roots and leaves. Can edible horticultural crops address dietary calcium, magnesium and potassium deficiencies? Proceedings of the Nutrition Society. 69:601-612.
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2010.
Effect of increased consumption of whole-grain foods on blood pressure and other cardiovascular risk markers in healthy middle-aged persons: a randomised controlled trial. American Journal of Clinical Nutrition. 94:733-740.
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2010.
Effect of method of conservation of timothy on endogenous nitrogen flows in lactating dairy cows. Journal of Dairy Science. 93:4252-4261.
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2010.
An efficient procedure for normalising ionomics data for Arabidopsis thaliana. New Phytologist. 186:270-274.
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2010.
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2010.
An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One. 5:-e8598.
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2010.
Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images. Machine Vision and Applications. 21:921-939.
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2010.
Estimation of maize canopy properties from remote sensing by inversion of 1-D and 4-D models. Precision Agriculture. 11:319-334.
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2010.
Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38:683-688.
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2010.
F-actin dynamics in Neurospora crassa. Eukaryotic Cell. 9:547-557.
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2010.
Flapjack - graphical genotype visualization. Bioinformatics. 26:3133-3134.
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2010.
Genetic analysis of potassium use efficiency in Brassica oleracea. Annals of Botany. 105:1199-1210.
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2010.
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
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2010.
Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
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2010.
Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.
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2010.
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2010.
Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health. 10:-423.
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2010.
The hydrological response of heavy clay grassland soils to rainfall in south-west England using . Rapid Communications in Mass Spectrometry. 24:475-482.
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2010.
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2010.
The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.
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2010.
Impact of sulphur fertilisation on crop response to selenium fertilisation. Plant and Soil. 332:31-40.
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2010.
Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.
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2010.
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2010.
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2010.
Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
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2010.
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2010.
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.. Nucleic Acids Research. 38:265-278.
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2010.
Involvement of the plant nucleolus in virus and viroid infections: Parallels with animal pathosystems. Advances in Virus Research. 77:119-158.
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2010.
Is the growth rate hypothesis applicable to microalgae? Journal of Phycology. 46:1-12.
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2010.
Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time. Trends in Ecology and Evolution. 25:574-582.
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2010.
Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.
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2010.
Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
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2010.
Measurement at the field scale of soil . Rapid Communications in Mass Spectrometry. 24:511-518.
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2010.
The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.
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2010.
A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
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2010.
Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.
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2010.
The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.
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2010.
Movement of newly assimilated 13C carbon in the grass Lolium perenne and its incorporation into rhizosphere microbial DNA. Rapid Communications in Mass Spectrometry. 24:535-540.
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2010.
Multi-environment QTL mapping in blackcurrant (Ribes nigrum L.) using mixed models. Theoretical and Applied Genetics. 121:1483-1488.
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2010.
Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
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2010.
Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology. 114:325-339.
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2010.
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2010.
The physiological basis of genotypic differences in nitrogen use efficiency in oilseed rape (Brassica napus L.). Field Crops Research. 119:365-373.
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2010.
Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.
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2010.
Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
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2010.
PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract
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2010.
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2010.
Plant nutrition for sustainable development and global health. Annals of Botany. 105:1073-1080.
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2010.
Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli. Nucleic Acids Research. 38:3054-3067.
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2010.
Plant-soil feedbacks contribute to an intransitive competitive network that promotes both genetic and species diversity. Journal of Ecology. 99:176-185.
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2010.
Planting density influence on fibrous root reinforcement of soils. Ecological Engineering. 36:276-284. Abstract
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2010.
The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
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2010.
Prevalence of Pasteurella multocida and other respiratory pathogens in the nasal tract of Scottish calves. Veterinary Record. 167:555-560.
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2010.
Profiling of phenols in human faecal water after raspberry supplementation. Journal of Agricultural and Food Chemistry. 58:10389-10395.
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2010.
Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
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2010.
Quantifying rhizosphere particle movement around mutant maize roots using time-lapse imaging and particle image velocimetry. European Journal of Soil Science. 61:926-939.
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2010.
Re-description of Cryptosporidium cuniculus Inman and Takeuchi 1979 (Apicomplexa:Cryptosporidiidae): morphology, biology and phylogeny. International Journal for Parasitology. 40:1539-1548.
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2010.
Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.
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2010.
Regression analysis of spatial data. Ecology Letters. 13:246-264.
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2010.
Regulation of plant gene expression by alternative splicing. Biochemical Society Transactions. 38:667-671.
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2010.
Relative importance of seed-tuber and soilborne inoculum in causing black dot disease of potato. Plant Pathology. 59:693-702.
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2010.
Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.
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2010.
Resistance of simple plant root systems to uplift loads. Canadian Geotechnical Journal. 47:78-95. Abstract
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2010.
Root growth models: Towards a new generation of continuous approaches. Journal of Experimental Botany. 61:2131-2143.
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2010.
The SAFE FOODS framework for improved risk analysis of foods. Food Control. 21:1566-1587.
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Shoot zinc (Zn) concentration varies widely within Brassica oleracea L. and is affected by soil Zn and phosphorus (P) levels. Journal of Horticultural Science & Biotechnology. 85:375-380.
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2010.
Soil compaction - N interactions in barley: Root growth and tissue composition. Soil and Tillage Research. 106:241-246.
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Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
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2010.
Storm flow and baseflow response to reduced acid deposition - using Bayesian compositional analysis in hydrograph separation with changing end members. Hydrological Processes. 24:2300-2312.
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2010.
Sustainable disease control using weeds as indicators: Capsella bursa pastoris and Tobacco Rattle Virus. Weed Research. 50:511-514.
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2010.
Tablet - next generation sequence assembly visualization. Bioinformatics. 26:401-402.
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2010.
Towards an understanding of how RxLR-effector proteins are translocated from oomycetes into host cells. Fungal Genetics Reviews. 24:27-36.
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2010.
Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.
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2010.
A universal agro-hydrological model for water and nitrogen cycles in the soil-crop system SMCR_N: Critical update and further validation. Agricultural Water Management. 97:1411-1422.
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2010.
Variation in acrylamide producing potential in potato: Segregation of the trait in a breeding population. Food Chemistry. 123:568-573.
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2010.
Whole-genome association mapping in elite inbred crop varieties. Genome. 53:967-972.
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2010.
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2011.
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2011.
ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
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2011.
Algal and aquatic plant carbon concentrating mechanisms in relation to environmental change. Photosynthesis Research. 109:281-296.
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2011.
Allele mining in barley genetic resources reveals genes of race-nonspecific powdery mildew resistance. Frontiers in Plant Science: Plant Nutrition. 2:e113.
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2011.
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Application of a value based equivalency method to assess environmental damage compensation under the European Environmental Liability Directive. Journal of Environmental Management. 92:1461-1470.
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2011.
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2011.
Arthropod pests of currant and gooseberry crops in the UK: their biology, management and future prospects. Agricultural and Forest Entomology. 13:221-237.
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2011.
Assessing the recovery potential of alpine moss-sedge heath: reciprocal transplants along a nitrogen deposition gradient. Environmental Pollution. 159:140-147.
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2011.
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2011.
Barriers to institutional learning and innovations in the forest sector in Europe: Markets, policies and stakeholders. Forest Policy and Economics. 13:124-131.
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2011.
Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution. 2:86-94.
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2011.
Blackcurrant reversion virus: validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants. Journal of Berry Research. 1:201-208.
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2011.
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2011.
Carbon mineralization kinetics and soil biological characteristics as influenced by manure addition in soil incubated at a range of temperatures. European Journal of Soil Biology. 47:392-399.
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2011.
Climate change, drought risk and land capability for agriculture: implications for land-use in Scotland. Regional Environmental Change. 11:503-518.
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2011.
Climatic drivers of plant-plant interactions and diversity in alpine communities. Alpine Botany. 121:63-70.
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2011.
Climatic modifiers of the response to nitrogen deposition in peat-forming Sphagnum mosses: a meta-analysis. New Phytologist. 191:496-507.
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2011.
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2011.
Co-researching the Cairngorms: supporting the aims of, not just researching in, the Cairngorms National Park. Scottish Geographical Journal.. 127:40-60.
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2011.
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2011.
Comparative visualization of genetic and physical maps with Strudel. Bioinformatics. 27:1307-1308.
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2011.
A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
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2011.
Conceptualising importance - response to Freckleton and Rees. Trends in Ecology and Evolution. 26:499-500.
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2011.
A conjoint analysis of landholder preferences for reward-based land-management contracts in Kapingazi watershed, Eastern Mount Kenya. Journal of Environmental Management. 92:2634-2646.
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2011.
A cost effectiveness analysis of water saving measures for the Water Framework Directive: the case of the Guadalquivir river basin in Southern Spain. Water Resources Management. 25:623-640.
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2011.
Creating a sexual self in heteronormative space: Integrations and imperatives amongst spiritual seekers at the Findhorn Community. Sociological Research Online. 16:Article7.
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2011.
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2011.
Demographic consequences of increased winter births in a large aseasonally breeding mammal (Bos taurus) in response to climate change. Journal of Animal Ecology. 80:1134-1144.
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2011.
Determinants of barley grain yield in a wide range of Mediterranean environments. Field Crops Research. 120:169-178.
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2011.
Determination of the duration of antibacterial efficacy following administration of gamithromycin using a bovine Mannheimia haemolytica challenge model. Antimicrobial Agents and Chemotherapy. 55:831-835.
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2011.
Developing carbon budgets for UK agriculture, land-use, land-use change and forestry out to 2022. Climatic Change. 105:529-553.
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2011.
Development and testing of a process-based soil model (MOSES) for ecosystem services. Ecological Modelling. 222:3795-3810.
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2011.
Development of a serodiagnostic test for sheep scab using recombinant protein Pso o 2. Molecular and Cellular Probes. 25:212-218.
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2011.
Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology. 179:209-215.
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2011.
Diagnostic accuracy of PCR for Jaagsiekte sheep retrovirus using field data from 125 Scottish sheep flocks. Veterinary Journal. 187:104-108.
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2011.
The disappearing mammal fauna of northern Australia: context, cause, and response. Conservation Letters. 4:192-201.
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2011.
Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Global Change Biology. 17:2488-2497.
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2011.
Do multiple herbivores maintain chemical diversity of Scots pine monoterpenes? Philosophical Transactions of the Royal Society, Series B. 366:1337-1345.
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2011.
Does incorporation of cowpea-maize residue mixes influence nitrous oxide emission and mineral nitrogen release in a tropical luvisol? Nutrient Cycling in Agroecosystems. 91:281-292.
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2011.
Dominant and diet-responsive groups of bacteria within the human colonic microbiota. International Society for Microbial Ecology (ISME) Journal. 5:220-230.
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2011.
Drought alters carbon fluxes in alpine snowbed ecosystems through contrasting impacts on graminoids and forbs. New Phytologist. 190:740-749.
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2011.
Early response mechanisms of perennial ryegrass (Lolium perenne) to phosphorous deficiency. Annals of Botany. 107:243-254.
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2011.
Early-successional vegetation changes after roadside prairie restoration modify soil functioning by changing microbial functional diversity. Soil Biology and Biochemistry. 43:1245-1253.
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2011.
Effector proteins that modulate plant-insect interactions. Current Opinion in Plant Biology. 14:422-428.
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2011.