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2012
Hough RL, Booth P, Avery LM, Rhind SM, Crews C, Bacon J, Campbell CD, Tompkins D.  2012.  Risk assessment of the use of PAS100 green composts in sheep and cattle production in Scotland. Waste Management. 32:117-130.
Bradford RA, O'Sullivan JJ, van der Craats IM, Krywkow J, Rotko P, Bonaiuto M, Waylen K, Schelfaut K.  2012.  Risk perception - Issues for flood management in Europe. Natural Hazards and Earth System Sciences. 12:2299-2309.
Dunn SM, Darling WG, Birkel C, Bacon JR.  2012.  The role of groundwater characteristics in catchment recovery from nitrate pollution. Hydrology Research. 43:560-575.
Charkowski A, Blanco C, Condemine G, Expert D, Franza T, Hayes C, Hugouvieux-Cotte-Pattat N, Lopez Solanilla E, Low D, Moleleki L et al..  2012.  The role of secretion systems and small molecules in soft-rot enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50:425-449.
Ibarra JT, Galvez N, Gimona A, Altamirano TA, Rojas I, Hester AJ, Laker AJ, Bonacic C.  2012.  Rufous-legged owl (Strix rufipes) and Austral pygmy owl (Glaucidium nanum) stand use in a gradient of disrupted and old growth Andean temperate forests, Chile. Studies on Neotropical Fauna and Environment. 47:33-40.
Busby J, Duckett D.  2012.  Social risk amplification as an attribution: the case of zoonotic disease outbreaks. Journal of Risk Research. 15:1049-1074.
Bouma J, Broll G, Crane TA, Dewitte O, Gardi C, Schulte R, Towers W.  2012.  Soil information in support of policy making and awareness raising. Current Opinion in Environmental Sustainability. 4:1-7.
Giles M, Morley N, Baggs EM, Daniell TJ.  2012.  Soil nitrate reducing processes - drivers, mechanisms for spatial variation, and significance for nitrous oxide production. Frontiers in Microbiology. 3:407.
Valentine TA, Hallett PD, Binnie K, Young MW, Squire GR, Hawes C, Bengough AG.  2012.  Soil strength and macropore volume limit root elongation rates in many UK agricultural soils. Annals of Botany. 110:259-270.
Newton AC, Guy DC, Bengough AG, Gordon DC, McKenzie BM, Sun B, Valentine TA, Hallett PD.  2012.  Soil tillage effects on the efficacy of cultivars and their mixtures in winter barley. Field Crops Research. 128:91-100.
Poggio L, Gimona A, Brown I.  2012.  Spatio-temporal MODIS EVI gap filling under cloud cover: an example in Scotland. ISPRS Journal of Photogrammetry and Remote Sensing. 72:56-72.
Higgins JD, Perry RM, Barakate A, Ramsay L, Waugh R, Halpin C, Armstrong SJ, Franklin FCH.  2012.  Spatiotemporal asymmetry of the meiotic program underlies the predominantly distal distribution of meiotic crossovers in barley. Plant Cell. 24:4096-4109.
van der Heijden G, Song Y, Horgan G, Polder G, Dieleman A, Bink M, Palloix A, van Eeuwijk F, Glasbey C.  2012.  SPICY: towards automated phenotyping of large pepper plants in the greenhouse. Functional Plant Biology. 39:870-877.
Puttock A, Dungait JAJ, Bol R, Dixon ER, Macleod CJA, Brazier RE.  2012.  Stable carbon isotope analysis of fluvial sediment fluxes over two contrasting C4-C3 semi-arid vegetation transitions. Rapid Communications in Mass Spectrometry. 26:2386-2392.
Beattie JH, Gordon M, Duthie SJ, McNeil CJ, Horgan GW, Nixon GF, Feldmann J, Kwun I.  2012.  Suboptimal dietary zinc intake promotes vascular inflammation and atherogenesis in a mouse model of atherosclerosis. Molecular Nutrition and Food Research. 56:1097-1105.
Burgess CGS, Bartley Y, Redman E, Skuce PJ, Nath M, Whitelaw F, Tait A, Gilleard JS, Jackson F.  2012.  A survey of the trichostrongylid nematode species present on UK sheep farms and associated anthelmintic control practices. Veterinary Parasitology. 189:299-307.
Bizikova L, Nijnik M, Kluvanokova-Oravska T.  2012.  Sustaining multifunctional forestry through the developing of social capital and promoting participation: A case of multiethnic mountain communities. Small Scale Forestry Journal. 11:301-319.
Smith P, Albanito F, Bell M, Bellarby J, Blagodatskiy S, Datta A, Dondini M, Fitton N, Flynn H, Hastings A et al..  2012.  Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W.  2012.  A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis. The Plant Cell. 24:3506-3529.
Bergfur J, Demars BOL, Stutter MI, Langan SJ, Friberg N.  2012.  The Tarland Catchment Initiative and its effect on stream water quality and macroinvertebrate indices. Journal of Environmental Quality. 41:314-321.
White PJ, Broadley MR, Thompson JA, McNicol JW, Crawley MJ, Poulton PR, Johnston AE.  2012.  Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment. New Phytologist. 196:101-109.
Tilsner J, Linnik O, Wright KM, Bell K, Roberts AG, Lacomme C, Santa Cruz S, Oparka KJ.  2012.  The TGB1 movement protein of potato virus X reorganises actin and endomembranes into the X--body, a viral replication factory. Plant Physiology. 158:1359-1370.
Clemente MR, Bustos-Sanmamed P, Loscos J, James EK, Perez-Rontome C, Navascues J, Gay M, Becana M.  2012.  Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
Dai F, Nevo E, Wu DZ, Comadran J, Zhou MX, Qiu L, Chen ZH, Beiles A, Chen GX, Zhang GP.  2012.  Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:16969-16973.
Sato S, Tabata S, Hirakawa H, Asamizu E, Shirasawa K, Isobe S, Bryan G, et al..  2012.  The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485:635-641.
Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow M, Verdier V, Beer SV, Machado MA et al..  2012.  Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology. 13:614-629.
Halliday AM, Lainson FA, Yaga R, Inglis NF, Bridgett S, Nath M, Knox DP.  2012.  Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
Marquez Y, Brown JWS, Simpson CG, Barta A, Kalyna M.  2012.  Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Research. 22:1184-1195.
Nwankno AJ, Gordon SL, Verrall SR, Brennan RM, Hancock RD.  2012.  Treatment with fungicides influences phytochemical quality of blackcurrant juice. Annals of Applied Biology. 160:86-96.
Sutherland LA, Burton RJF, Ingram J, Blackstock KL, Slee B, Gotts N.  2012.  Triggering change: towards a conceptualisation of major change processes in farm decision-making. Journal of Environmental Management. 104:142-151.
Buijs A, Hovardas T, Castro P, Devine-Wright P, Figari H, Fischer A, Mouro C, Selge S.  2012.  Understanding people's ideas on natural resource management: research on social representations of nature. Society and Natural Resources.. 25:1167-1181.
Peukert S, Bol R, Roberts W, Macleod CJA, Murray PJ, Dixon ER, Brazier RE.  2012.  Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments. Rapid Communications in Mass Spectrometry. 26:2413-2421.
Hoggard N, Cruickshank M, Moar KM, Bashir S, Mayer CD.  2012.  Using gene expression to predict differences in the secretome of human omental vs. subcutaneous adipose tissue. Obesity. 20:1158-1167.
Swanston JS, Smith PL, Agu RC, Brosnan JM, Bringhurst TA, Jack FR.  2012.  Variation, across environments within the UK, in grain protein and grain hardness, in wheat varieties of differing distilling quality. Field Crops Research. 127:146-152.
Baxter E, Jarvis S, Palarea-Albaladejo J, Edwards SA.  2012.  The weaker sex? The propensity for male-biased piglet mortality PLoS ONE. 7:e30318.
Brown LK, George TS, Thompson JA, Wright GM, Lyon J, Dupuy L, Hubbard SF, White PJ.  2012.  What are the implications of variation in root hair length on tolerance to phosphorus deficiency in combination with water stress in barley (Hordeum vulgare)? Annals of Botany. 110:319-328.
Gimona A, Poggio L, Brown I, Castellazzi M.  2012.  Woodland networks in a changing climate: Threats from land use change. Biological Conservation. 149:93-102.
Bingham IJ, Hoad SP, Thomas WTB, Newton AC.  2012.  Yield response to fungicide of spring barley genotypes differing in disease susceptibility and canopy structure. Field Crops Research. 139:9-19.
Dinnie E, Browne K.  2012.  You again - what are you researching this time? can you ever "leave the field"? Fieldwork in Religion. 7:164-179.
2011
Bouwman FG, de Roos B, Rubio-Aliaga I, Crosley LK, Duthie SJ, Mayer CD, Horgan GW, Polley AC, Heim C, Coort SLM et al..  2011.  2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting. BMC Medical Genomics. 4
Hill PW, Quilliam RS, DeLuca TH, Farrar J, Farrell M, Roberts P, Newsham KK, Hopkins DW, Bardgett RD, Jones DL.  2011.  Acquisition and assimilation of nitrogen as peptide-bound and D-enantiomers of amino acids by wheat. PLoS ONE. 6:e19220.
Sun XL, Gilroy EM, Chini A, Nurmberg PL, Hein I, Lacomme C, Birch PRJ, Hussain A, Yun BW, Loake GJ.  2011.  ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
Raven JA, Giordano M, Beardall J, Maberly SC.  2011.  Algal and aquatic plant carbon concentrating mechanisms in relation to environmental change. Photosynthesis Research. 109:281-296.
Spies A, Korzun V, Bayles R, Rajaraman J, Hedley PE, Schweizer P.  2011.  Allele mining in barley genetic resources reveals genes of race-nonspecific powdery mildew resistance. Frontiers in Plant Science: Plant Nutrition. 2:e113.
Russell JR, Dawson IK, Flavell AJ, Steffenson B, Weltzien E, Booth A, Ceccarelli S, Grando S, Waugh R.  2011.  Analysis of >1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes. New Phytologist. 191:564-578.
Martin-Ortega J, Brouwer R, Aiking H.  2011.  Application of a value based equivalency method to assess environmental damage compensation under the European Environmental Liability Directive. Journal of Environmental Management. 92:1461-1470.
Lennon JJ, Beale CM, Reid CL, Kent M, Pakeman RJ.  2011.  Are richness patterns of common and rare species equally well explained by environmental variables? Ecography. 34:529-539.
Mitchell C, Brennan RM, Cross JV, Johnson SN.  2011.  Arthropod pests of currant and gooseberry crops in the UK: their biology, management and future prospects. Agricultural and Forest Entomology. 13:221-237.
Armitage HF, Britton AJ, Woodin SJ, van der Wal R.  2011.  Assessing the recovery potential of alpine moss-sedge heath: reciprocal transplants along a nitrogen deposition gradient. Environmental Pollution. 159:140-147.
Wuyts N, Bengough AG, Roberts TJ, Du C, Bransby MF, McKenna SJ, Valentine TA.  2011.  Automated motion estimation of root responses to sucrose in two Arabidopsis thaliana genotypes using confocal microscopy. Planta. 234:769-784.
Buttoud G, Kouplevatskaya-Buttoud I, Slee B, Weiss G.  2011.  Barriers to institutional learning and innovations in the forest sector in Europe: Markets, policies and stakeholders. Forest Policy and Economics. 13:124-131.
Cornulier T, Robinson RA, Elston DA, Lambin X, Sutherland WJ, Benton T.  2011.  Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution. 2:86-94.
Dolan A, MacFarlane SA, McGavin WJ, Brennan RM, McNicol JW.  2011.  Blackcurrant reversion virus: validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants. Journal of Berry Research. 1:201-208.
Cooper JM, Burton D, Daniell TJ, Griffiths BS, Zebarth BJ.  2011.  Carbon mineralization kinetics and soil biological characteristics as influenced by manure addition in soil incubated at a range of temperatures. European Journal of Soil Biology. 47:392-399.
Brown I, Poggio L, Gimona A, Castellazzi MS.  2011.  Climate change, drought risk and land capability for agriculture: implications for land-use in Scotland. Regional Environmental Change. 11:503-518.
Kikvidze Z, Michalet R, Brooker RW, Cavieres LA, Lortie CJ, Pugnaire FI, Callaway RM.  2011.  Climatic drivers of plant-plant interactions and diversity in alpine communities. Alpine Botany. 121:63-70.
Limpens J, Granath G, Gunnarsson U, Aerts R, Bayley S, Bragazza L, Bubier J, Buttler A, van den Berg LJL, Francez AJ et al..  2011.  Climatic modifiers of the response to nitrogen deposition in peat-forming Sphagnum mosses: a meta-analysis. New Phytologist. 191:496-507.
Blackstock KL, Dinnie E, Trench H, Miles G.  2011.  Co-researching the Cairngorms: supporting the aims of, not just researching in, the Cairngorms National Park. Scottish Geographical Journal.. 127:40-60.
Fisher M, Downie H, Welten MCM, Delgado I, Bain AA, Planzer T, Sherman A, Sang H, Tickle C.  2011.  Comparative analysis of 3D expression patterns of transcription factor genes and digit fate maps in the developing chick wing. PLoS ONE. 6:e18661.
Bayer MM, Milne I, Stephen G, Shaw P, Cardle L, Wright F, Marshall DF.  2011.  Comparative visualization of genetic and physical maps with Strudel. Bioinformatics. 27:1307-1308.
Dick J, Andrews C, Beaumont DA, Benham S, Brooks DR, Corbett S, Lloyd D, McMillan S, Monteith DT, Pilgrim ES et al..  2011.  A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
Kikvidze Z, Suzuki M, Brooker R.  2011.  Conceptualising importance - response to Freckleton and Rees. Trends in Ecology and Evolution. 26:499-500.
Balana BB, Yatich T, Makela M.  2011.  A conjoint analysis of landholder preferences for reward-based land-management contracts in Kapingazi watershed, Eastern Mount Kenya. Journal of Environmental Management. 92:2634-2646.
Newton AC, Flavell AJ, George TS, Leat P, Mullholland BJ, Ramsay L, Revoredo-Giha C, Russell JR, Steffenson BJ, Swanston JS et al..  2011.  Crops that feed the world 4. Barley: a resilient crop? Strengths and weaknesses in the context of food security Food Security. 3:141-178.
Burthe S, Butler A, Searle KR, Hall S, Thackeray SJ, Wanless S.  2011.  Demographic consequences of increased winter births in a large aseasonally breeding mammal (Bos taurus) in response to climate change. Journal of Animal Ecology. 80:1134-1144.
Francia E, Tondelli A, Rizza F, Badeck FW, Nicosia OLD, Akar T, Grando S, Al-Yassin A, Bendelkacem A, Thomas WTB et al..  2011.  Determinants of barley grain yield in a wide range of Mediterranean environments. Field Crops Research. 120:169-178.
Forbes AB, Ramage C, Sales J, Baggott D, Donachie W.  2011.  Determination of the duration of antibacterial efficacy following administration of gamithromycin using a bovine Mannheimia haemolytica challenge model. Antimicrobial Agents and Chemotherapy. 55:831-835.
Moran D, MacLeod M, Wall V, Eory V, McVittie A, Barnes A, Rees R, Pajot G, Matthews R, Smith P et al..  2011.  Developing carbon budgets for UK agriculture, land-use, land-use change and forestry out to 2022. Climatic Change. 105:529-553.
Aitkenhead MJ, Albanito F, Jones MB, Black HIJ.  2011.  Development and testing of a process-based soil model (MOSES) for ecosystem services. Ecological Modelling. 222:3795-3810.
Nunn FG, Burgess STG, Innocent G, Nisbet AJ, Bates P, Huntley JF.  2011.  Development of a serodiagnostic test for sheep scab using recombinant protein Pso o 2. Molecular and Cellular Probes. 25:212-218.
Benavides J, Maley SM, Pang YP, Palarea J, Eaton SL, Katzer F, Innes EA, Buxton DA, Chianini F.  2011.  Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology. 179:209-215.
Lewis FI, Brulisauer F, Cousens C, McKendrick IJ, Gunn GJ.  2011.  Diagnostic accuracy of PCR for Jaagsiekte sheep retrovirus using field data from 125 Scottish sheep flocks. Veterinary Journal. 187:104-108.
Woinarski JCZ, Legge S, Fitzsimons JA, Traill BJ, Burbidge AA, Fisher A, Firth RSC, Gordon IJ, Griffiths AD, Johnson C et al..  2011.  The disappearing mammal fauna of northern Australia: context, cause, and response. Conservation Letters. 4:192-201.
Hepburn CD, Pritchard DW, Cornwall CE, McLeod RJ, Beardall J, Raven JA, Hurd CL.  2011.  Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Global Change Biology. 17:2488-2497.
Iason GR, O'Reilly-Wapstra J, Brewer MJ, Summers RW, Moore BD.  2011.  Do multiple herbivores maintain chemical diversity of Scots pine monoterpenes? Philosophical Transactions of the Royal Society, Series B. 366:1337-1345.
Frimpong KA, Yawson DO, Baggs EM, Agyarko K.  2011.  Does incorporation of cowpea-maize residue mixes influence nitrous oxide emission and mineral nitrogen release in a tropical luvisol? Nutrient Cycling in Agroecosystems. 91:281-292.
Walker AW, Ince J, Duncan SH, Webster L, Holtrop G, Ze X, Brown DS, Stares MD, Scott P, Bergerat A et al..  2011.  Dominant and diet-responsive groups of bacteria within the human colonic microbiota. International Society for Microbial Ecology (ISME) Journal. 5:220-230.
Johnson D, Vachon J, Britton AJ, Helliwell RC.  2011.  Drought alters carbon fluxes in alpine snowbed ecosystems through contrasting impacts on graminoids and forbs. New Phytologist. 190:740-749.
Byrne SL, Foito A, Hedley PE, Morris J, Stewart D, Barth S.  2011.  Early response mechanisms of perennial ryegrass (Lolium perenne) to phosphorous deficiency. Annals of Botany. 107:243-254.
Garcia-Palacios P, Bowker MA, Chapman SJ, Maestre FT, Soliveres S, Gallardo A, Valladares F, Guerrero C, Castillo-Monroy AP, Escudero A.  2011.  Early-successional vegetation changes after roadside prairie restoration modify soil functioning by changing microbial functional diversity. Soil Biology and Biochemistry. 43:1245-1253.
Hogenhout SA, Bos JIB.  2011.  Effector proteins that modulate plant-insect interactions. Current Opinion in Plant Biology. 14:422-428.
Karami N, Clemente R, Moreno-Jimenez E, Lepp NW, Beesley L.  2011.  Efficiency of green waste compost and biochar soil amendments for reducing lead and copper mobility and uptake to ryegrass. Journal of Hazardous Materials. 191:41-48.
Johnson SN, Barton AT, Clark KE, Gregory PJ, McMenemy LS, Hancock RD.  2011.  Elevated atmospheric carbon dioxide impairs the performance of root-feeding vine weevils by modifying root growth and secondary metabolites. Global Change Biology. 17:688-695.
Martin-Ortega J, Giannocaro G, Berbel J.  2011.  Environmental and resource costs under water scarcity conditions: an estimation in the context of the European Water Framework Directive. Water Resources Management. 25:1615-1633.
Andersen R, Poulin M, Borcard D, Laiho R, Laine J, Vasander H, Tuittila ET.  2011.  Environmental control and spatial structures in peatland vegetation. Journal of Vegetation Science. 22:878-890.
Marcon M, Mariano K, Braga RA, Paglis CM, Scalco MS, Horgan GW.  2011.  Estimation of total leaf area in perennial plants using image analysis. Revista Brasileira de Engenharia Agricola e Ambiental. 15:96-101.
Hofinger BJ, Russell JR, Bass CG, Baldwin T, dos Reis M, Hedley PE, Li Y, Macaulay M, Waugh R, Hammond-Kosack KE et al..  2011.  An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20:3653-3668.
Whisson SC, Avrova AO, Boevink PC, Armstrong MR, Seman ZA, Hein I, Birch PRJ.  2011.  Exploiting knowledge of pathogen effectors to enhance late blight resistance in potato. Potato Research. 54:325-340.
Moreno-Jimenez E, Beesley L, Lepp NW, Dickinson NM, Hartley W, Clemente R.  2011.  Field sampling of soil pore water to evaluate trace element mobility and associated environmental risk. Environmental Pollution. 159:3078-3085.
Bernhardt-Romermann M, Gray A, Vanbergen AJ, Berges L, Bohner A, Brooker RW, De Bruyn L, De Cinti B, Dirnbrock T, Grandin U et al..  2011.  Functional traits and local environment predict vegetation responses to disturbance: a pan-European multi-site-experiment. Journal of Ecology. 99:777-787.
Malosetti M, van Eeuwijk FA, Boer MP, Casas AM, Elia M, Moralejo M, Bhat PR, Ramsay L, Molina-Cano J.  2011.  Gene and QTL detection in a three-way barley cross under selection by a mixed model with kinship information using SNPs. Theoretical and Applied Genetics. 122:1605-1616.
Hammond JP, Broadley MR, Bowen HC, Spracklen WP, Hayden R, White PJ.  2011.  Gene expression changes in phosphorus deficient potato (Solanum tuberosum L.) leaves and the potential for diagnostic gene expression markers. PLoS ONE. 6:e24606.
O' Lochlainn SE, Fray RG, Hammond JP, King GJ, White PJ, Young SD, Broadley MR.  2011.  Generation of nonvernal-obligate, faster-cycling Noccaea caerulescens lines through fast neutron mutagenesis. New Phytologist. 189:409-414.
Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M et al..  2011.  Genetic dissection of barley morphology and development. Plant Physiology. 155:617-627.
Glasner JD, Yang C, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van GF, Yang S, Franza T, Expert D et al..  2011.  Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193:2076-2077.
Lambe NR, Richardson RI, Macfarlane JM, Nevison I, Haresign W, Matika O, Bunger L.  2011.  Genotypic effects of the Texel Muscling QTL (TM-QTL) on meat quality in purebred Texel lambs. Meat Science. 89:125-132.
Beattie JH, Nicol F, Gordon MJ, Reid MD, Cantlay L, Horgan GW, Kwun IS, Ahn JY, Ha TY.  2011.  Ginger phytochemicals mitigate the obesogenic effects of a high-fat diet in mice: a proteomic and biomarker network analysis. Molecular Nutrition and Food Research. 55:S203-S213.
Fitton N, Ejerenwa C, Bhogal A, Edgington P, Black HIJ, Lilly A, Barraclough D, Worral F, Hillier J, Smith P.  2011.  Greenhouse gas mitigation potential of agricultural land in Great Britain. Soil Use and Management.. 27:491-501.
Baker RH, Buschbaum S, Matthews J, McKendrick IJ, Schnieder T, Strube C, Nisbet AJ.  2011.  GTP-cyclohydrolase and development in Teladorsagia circumcinta and Dictyocaulus viviparus (Nematoda:Strongylida). Experimental Parasitology. 128:309-317.
de Roos B, Wanders AJ, Wood S, Horgan GW, Rucklige G, Reid M, Siebelink E, Brouwer IA.  2011.  A high intake of industrial or ruminant trans fatty acids does not affect the plasma proteome in healthy men. Proteomics. 11:3928-3934.
Lochlainn S, Amoah S, Graham NS, Alamer K, Rios JJ, Kurup S, Stoute A, Hammond JP, Ostergaard L, King GJ et al..  2011.  High resolution melt (HRM) analysis is an efficient tool to genotype EMS mutants in complex crop genomes. Plant Methods. 7:1-9.
Schmalenbach I, March TJ, Bringezu T, Waugh R, Pillen K.  2011.  High-resolution genotyping of wild barley introgression lines and fine-mapping of the threshability locus thresh-1 using the Illumina GoldenGate assay. Genes Genomes Genetics. 1:187-196.
Liu H, McNicol JW, Bayer MM, Morris JA, Cardle L, Marshall DF, Schulte D, Stein N, Shi B, Tandien S et al..  2011.  Highly parallel gene-to-BAC addressing using microarrays. Biotechniques. 50:165-174.
de Boer JM, Borm TJA, Jesse T, Brugmans B, Tang XM, Bryan GJ, Bakker J, van EHJ, Visser RGF.  2011.  A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome. BMC Genomics. 12:ArticleNo.594..
Russell JR, Bayer MM, Booth C, Cardle L, Hackett CA, Hedley PE, Jorgensen L, Morris JA, Brennan RM.  2011.  Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum). BMC Plant Biology. 11:147.
Beesley L, Marmiroli M.  2011.  The immobilisation and retention of soluble arsenic, cadmium and zinc by biochar. Environmental Pollution. 159:474-480.
Norici A, Bazzoni AM, Pugnetti A, Raven JA, Giordano M.  2011.  Impact of irradiance on the C allocation in the coastal marine diatom Skeletonema marionoi Sarno and Zingone. Plant, Cell and Environment. 34:1666-1677.
George TS, Brown LK, Newton AC, Hallett PD, Sun BH, Thomas WTB, White PJ.  2011.  Impact of soil tillage on the robustness of the genetic component of variation in phosphorus (P) use efficiency in barley (Hordeum vulgare L.). Plant and Soil. 339:113-123.
Kikvidze Z, Suzuki M, Brooker R.  2011.  Importance versus intensity: the context matters. Trends in Ecology and Evolution. 26:383-398.
Brennan RM, Russell JR, Jorgensen L, Abreu IN, Jarret D, Gordon S, Hackett CA.  2011.  Improving breeding efficiency in blackcurrant - the application of new selection techniques in Ribes. Acta Horticulturae. 946:157-160.
Blok V, Kaczmarek A, Palomares-Rius JE.  2011.  Influence of temperature on the life-cycle of Globodera spp. Communications in Agricultural and Applied Biological Sciences. 76:307-310.
Britton AJ, Helliwell RC, Lilly A, Dawson LA, Fisher JM, Coull MC, Ross J.  2011.  An integrated assessment of ecosystem carbon pools and fluxes across an oceanic alpine toposequence. Plant and Soil. 345:287-302.
Ramsay L, Comadran J, Druka A, Marshall DF, Thomas WTB, Macaulay M, MacKenzie K, Simpson CG, Fuller J, Bonar N et al..  2011.  INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nature Genetics. 43:169-172.
McKeown NK, Bishop JL, Cuadros J, Hillier S, Amador E, Makarewicz HD, Parente M, Silver EA.  2011.  Interpretation of reflectance spectra of clay mineral-silica mixtures: implications for Martian clay mineralogy at Mawrth Vallis. Clays and Clay Minerals. 59:400-415.
Tordoff GM, Chamberlain PM, Crowther TW, Black HIJ, Jones TH, Stott A, Boddy L.  2011.  Invertebrate grazing affects nitrogen partitioning in the saprotrophic fungus Phanerochaete velutina. Soil Biology and Biochemstry. 43:2338-2346.
Ballingall KT, Nath M, Holliman A, Laming E, Steele PJ, Willoughby K.  2011.  Lack of evidence for an association between MHC diversity and the development of bovine neonatal pancytopenia in Holstein dairy cattle. Veterinary Immunology and Immunopathology. 141:128-132.
Upadhyaya HD, Dwivedi SL, Ambrose M, Ellis N, Berger J, Smykal P, Debouck D, Duc G, Dumet D, Flavell A et al..  2011.  Legume genetic resources: management, diversity assessment, and utilization in crop improvement. Euphytica. 180:27-47.
Gyaneshwar P, Hirsch AM, Moulin L, Chen WM, Elliott GN, Bontemps C, Estrada-de los Santos P, Gross E, dos Reis J, F.B et al..  2011.  Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Molecular Plant-Microbe Interactions. 24:1276-1288.
Fischer A, Langers F, Bednar-Friedl B, Geamana N, Skogen K.  2011.  Mental representations of animal and plant species in their social contexts: Results from a survey across Europe. Journal of Environmental Psychology. 31:118-128.
Beleggia R, Platani C, Papa R, Di Chio A, Barros E, Mashaba C, Wirth J, Fammartino A, Sautter C, Conner S et al..  2011.  Metabolomics and food processing: from semolina to pasta. Journal of Agricultural and Food Chemistry. 59:9366-9377.
Rubio-Aliaga I, de Roos B, Duthie SJ, Crosley LK, Mayer C, Horgan GW, Colquhoun IJ, Le Gall G, Huber F, Kremer W et al..  2011.  Metabolomics of prolonged fasting in humans reveals new catabolic markers. Metabolomics. 7:375-387.
Ronfort C, Souchere V, Martin P, Sebillotte C, Castellazzi MS, Barbottin A, Meynard JM, Laignel B.  2011.  Methodology for land use change scenario assessment for runoff impacts: A case study in a north-western European Loess belt region (Pays de Caux, France). Catena. 86:36-48.
Comadran J, Russell JR, Booth A, Pswarayi A, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A et al..  2011.  Mixed model association scans of multi-environmental trial data reveal major loci controlling yield and yield related traits in Hordeum vulgare in Mediterranean environments. Theoretical and Applied Genetics. 122:1363-1373.
Caron-Lormier G, Bohan DA, Dye R, Hawes C, Humphry RW, Raybould A.  2011.  Modelling an ecosystem: the example of agro-ecosystems. Ecological Modelling. 222:1163-1173.
Bohan DA, Powers SJ, Champion G, Haughton AJ, Hawes C, Squire GR, Cussans J, Mertens SK.  2011.  Modelling rotations: can crop sequences explain arable weed seedbank abundance? Weed Research. 51:422-432.
Duarte IM, Almeida MTM, Duarte MM, Brown DJF, Neilson R.  2011.  Molecular diagnosis of trichodorid species from Portugal. Plant Pathology. 60:586-594.
Oliveira CMG, Inomoto MM, Bessi R, Tomazini MDO, Blok VC.  2011.  Molecular techniques and classical taxonomy on plant-parasitic nematodes diagnosis. Annual Review of Plant Pathology. 19:309-336.
Oliveira CMG, Monteiro AR, Blok VC.  2011.  Morphological and molecular diagnostics for plant-parastic nematodes: working together to get the identification done. Tropical Plant Pathology. 36:65-73.
van Doorn WG, Beers EP, Dangl JL, Franklin-Tong VE, Gallois P, Hara-Nishimura I, Jones AM, Kawai-Yamada M, Lam E, Mundy J et al..  2011.  Morphological clasification of plant cell deaths. Cell Death and Differentiation. 18:1241-1246.
Bennett AE, Thomsen M, Strauss SY.  2011.  Multiple mechanisms enable invasive species to suppress native species. Amercian Journal of Botany. 98:1086-1094.
Andrews M, James EK, Sprent JI, Boddey RM, Gross E, Dos Reis Junior FB.  2011.  Nitrogen fixation in legumes and actinorhizal plants in natural ecosystems: values obtained using N-15 natural abundance. Plant Ecology and Diversity. 4:131-140.
Xiao H, Hourihan JM, Brown LJ, McMahon M, Stewart D, Hayes JD.  2011.  Nrf2-mediated induction of antioxidant response element-driven gene expression by flavonoids is dependent on their chemical structure. Toxicology. 290:126-127.
Torres GA, Gong Z, Iovene M, Hirsch C, Buell CR, Bryan GJ, Novak P, Macas J, Jiang J.  2011.  Organization and evolution of subtelomeric satellite repeats in the potato genome. Genes Genomes Genetics. 1:85-92.
Spezia L, Futter MN, Brewer MJ.  2011.  Periodic multivariate normal hidden Markov models for the analysis of water quality time series. Environmetrics. 22:304-317.
White PJ, Broadley MR.  2011.  Physiological limits to zinc biofortification of edible crops. Frontiers in Plant Science. 2:article80.
Bjorkman M, Klingen I, Birch ANE, Bones AM, Bruce T, Johansen T, Meadow R, Molmann J, Selijasen R, Smart L et al..  2011.  Phytochemicals of Brassicaceae in plant protection and human health - influences of climate, environment and agronomic practice. Phytochemistry. 72:538-556.
Skiba MW, George TS, Baggs EM, Daniell TJ.  2011.  Plant influence on nitrification. Biochemical Society Transactions. 39:275-278.
Gilroy EM, Breen S, Whisson SC, Squires J, Hein I, Kaczmarek M, Turnbull D, Boevink P, Lokossou A, Cano LM et al..  2011.  Presence/absence, differential expression and sequence polmorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants. New Phytologist. 191:763-776.
Evans J, Knight H, McKendrick IJ, Stevenson H, Barbudo AV, Gunn GJ, Low JC.  2011.  Prevalence of Escherichia coli O157: H7 and serogroups O26, O103, O111 and O145 in sheep presented for slaughter in Scotland. Journal of Medical Microbiology. 60:653-660.
Gontikaki E, Mayor DJ, Thornton B, Black K, Witte U.  2011.  Processing of 13C-labelled diatoms by a bathyal community at sub-zero temperatures. Marine Ecology Progress Series. 421:39-50.
Nijnik M, Miller DR, Nijnik, M.; Mather A, Fiorini S, Vogt N, Brondizio E, Morrice JG.  2011.  Public participation for planning the sustainable use of natural resources and landscape changes. International Journal of Interdisciplinary Social Sciences. 5:303-320.
Moles AT, Wallis IR, Foley WJ, Warton DI, Bisigato AJ, Clark CJ, Cohen PS, Cornwell WK, Edwards EWR, Gonzales-Ojeda T et al..  2011.  Putting plant defences on the map: a test of the idea that plants are better defended at lower latitudes. New Phytologist. 191:777-788.
Matthews KB, Rivington M, Blackstock KL, McCrum G, Buchan K, Miller DG.  2011.  Raising the bar? The challenge of evaluating the outcomes of environmental modelling and software Environmental Modelling and Software. 26:247-257.
Belenguer A, Holtrop G, Duncan SH, Anderson SE, Calder AG, Flint HJ, Lobley GE.  2011.  Rates of production and utilization of lactate by microbial communities from the human colon. FEMS Microbiology Ecology. 77:107-119.
Hammond JP, Mayes S, Bowen HC, Graham NS, Hayden RM, Love CG, Spracklen WP, Wang J, Welham SJ, White PJ et al..  2011.  Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa. Plant Physiology. 156:1230-1241.
Rojas I, Becerra P, Galvez N, Laker J, Bonacic C, Hester AJ.  2011.  Relationship between fragmentation, degradation and native and exotic species richness in an Andean temperate forest in Chile. Gayana Botanica. 68:163-175.
Nazaries L, Tate KR, Ross DJ, Singh J, Dando J, Saggar S, Baggs EM, Millard P, Murrell JC, Singh BK.  2011.  Response of methanotrophic communities to afforestation and reforestation in New Zealand. ISME Journal. 5:1832-1836.
Crawfurd KJ, Raven JA, Wheeler GL, Baxter EJ, Joint I.  2011.  The response of Thalassiosira pseudonana to long-term exposure to increased CO2 and decreased pH. PLoS ONE. 6:e26995.
Beesley L, Moreno-Jimenez E, Gomez-Eyles JL, Harris E, Robinson B, Sizmur T.  2011.  A review of biochars' potential role in the remediation, revegetation and restoration of contaminated soils. Environmental Pollution. 159:3269-3282.
Bengough AG, McKenzie BM, Hallett PD, Valentine TA.  2011.  Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits. Journal of Experimental Botany. 62:59-68.
Carvalhais LC, Dennis PG, Fedoseyenko D, Hajirezaei MR, Borriss R, von Wiren N.  2011.  Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency. Journal of Plant Nutrition and Soil Science. 174:3-11.
Hart DJ, Fairweather-Tait SJ, Broadley MR, Dickinson SJ, Foot I, Knott P, McGrath SP, Mowat H, Norman K, Scott PR et al..  2011.  Selenium concentration and speciation in biofortified flour and bread: Retention of selenium during grain biofortification, processing and production of Se-enriched food. Food Chemistry. 126:1771-1778.
Krivtsov V, Griffiths BS, Liddell K, Garside A, Salmond R, Bezginova T, Thompson J.  2011.  Soil nitrogen availability is reflected in the bacterial pathway. Pedosphere. 21:26-30.
Powlson DS, Brookes PC, Whitmore AP, Goulding KWT, Hopkins DW.  2011.  Soil organic matters. European Journal of Soil Science. 62:1-4.
Brewer MJ, Tetzlaff D, Malcolm IA, Soulsby C.  2011.  Source distribution modelling for end-member mixing in hydrology. Environmetrics. 22:921-932.
Squire GR, Breckling B, Pfeilstetter AD, Jorgensen RB, Lecomte J, Pivard S, Reuter H, Young MW.  2011.  Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.
Giammaria V, Grandellis C, Bachmann S, Gargantini PR, Feingold SE, Bryan GJ, Ulloa RM.  2011.  StCDPK2 expression and activity reveal a highly responsive potato calcium-dependent protein kinase involved in light signalling. Planta. 233:593-609.
Rasmussen JJ, Baattrup-Pedersen A, Riis T, Friberg N.  2011.  Stream ecosystem properties and processes along a temperature gradient. Aquatic Ecology. 45:231-242.
Bisi F, Newey SJ, Nodari M, Wauters LA, Harrison A, Thirgood SJ, Martinoli A.  2011.  The strong and the hungry: Bias in capture methods for mountain hares Lepus timidus. Wildlife Biology. 17:311-316.
Belanche A, Abecia L, Holtrop G, Guada JA, Castrillo C, de la Fuente G, Balcells J.  2011.  Study of the effect of presence or absence of protozoa on rumen fermentation and microbial protein contribution to the chyme. Journal of Animal Science. 89:4163-4174.
Barakate A, Stephens J, Goldie A, Hunter WN, Marshall DF, Hancock RD, Lapierre C, Morreele K, Boerjane W, Halpin C.  2011.  Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco. Plant Cell. 23:4492-4506.
O' Lochlainn SE, Bowen HC, Fray RG, Hammond JP, King GJ, White PJ, Graham NS, Broadley MR.  2011.  Tandem quadruplication of HMA4 in the zinc (Zn) and cadmium (Cd) hyperaccumulator Noccaea caerulescens. PLoS ONE. 6:e17814.
Bengsen AJ, Leung LKP, Lapidge SJ, Gordon IJ.  2011.  Target-specificity of feral pig baits under different conditions in a tropical rainforest. Wildlife Research. 38:370-378.
Alexandrov GA, Ames D, Aumann C, Bellocchi G, Bruen M, Crout N, Erechtchoukova M, Hildebrandt A, Hoffman F, Jackisch C et al..  2011.  Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26:328-336.
Martin-Fernandez JA, Palarea-Albaladejo J, Barcelo-Vidal C.  2011.  Tecnicas composicionales para concentraciones geoquimicas por debajo del limite de deteccion. Boletin Instituto Geologico y Minero de Espana. 122:459-468.
Tolkamp BJ, Allcroft DJ, Barrio JP, Bley TAG, Howie JA, Jacobsen TB, Morgan CA, Schweitzer DPN, Wilkinson S, Yeates MP et al..  2011.  The temporal structure of feeding behaviour. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology. 301:R378-R393.
Jacobs AAA, Scheper JA, Benvenutti MA, Gordon IJ, Poppi DP, Elgersma A.  2011.  Tensile fracture properties of seven tropical grass species at different phenological stages. Grass and Forage Science. 66:551-559.
Bengsen AJ, Leung L, Lapidge SJ, Gordon IJ.  2011.  Testing target-specific bait delivery for controlling feral pigs in a tropical rainforest. Ecological Management and Restoration. 12:226-229.
Subramanian NK, White PJ, Broadley MR, Ramsay G.  2011.  The three dimensional distribution of minerals in potato tubers. Annals of Botany. 107:681-691.
Sutherland LA, Barnes A, McCrum G, Blackstock KL, Toma L.  2011.  Towards a cross-sectoral analysis of land use decision-making in Scotland. Landscape and Urban Planning. 100:1-10.
Graham J, Hackett CA, Smith K, Woodhead M, MacKenzie K, Tierney I, Cooke DEL, Bayer MM, Jennings N.  2011.  Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry. Theoretical and Applied Genetics. 123:585-601.
Pakeman RJ, Lennon JJ, Brooker RW.  2011.  Trait assembly in plant assemblages and its modulation by productivity and disturance. Oecologia. 167:209-218.
Massa AN, Childs KL, Lin HN, Bryan GJ, Giuliano G, Buell CR.  2011.  The transcriptome of the reference potato genome Solanum tuberosum group phureja clone DM1-3 516R44. PLoS ONE. 6:e26801.
Rakitina DV, Taliansky ME, Brown JWS, Kalinina NO.  2011.  Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates. Nucleic Acids Research. 39:8869-8880.
Augusto L, Zeller B, Midwood AJ, Swanston C, Dambrine E, Schneider A, Bosc A.  2011.  Two year dynamics of foliage labelling in 8 year-old Pinus pinaster trees with 15N 26Mg and 42Ca - simulation of Ca transport using an upscaling approach. Annals of Forest Science. 68:169-178.
Bell MJ, Worrall F, Smith P, Bhogal A, Black HIJ, Lilly A, Barraclough D, Merrington G.  2011.  UK land-use change and its impact on SOC: 1925-2007. Global Biogeochemical Cycles. 25
Lewis F, Butler A, Gilbert L.  2011.  A unified approach to model selection using the likelihood ratio test. Methods in Ecology and Evolution. 2:155-162.
Fischer A, Bednar-Friedl B, Langers F, Dobrovodska M, Geamana N, Skogen K, Dumortier M.  2011.  Universal criteria for species conservation priorities? Findings from a survey of public views across Europe Biological Conservation. 144:998-1007.
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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.