Publications list
Filters: First Letter Of Last Name is C [Clear All Filters]
Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.
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2009.
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research. 38:1767-1771.
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2010.
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2013.
Evolution of relative reading frame bias in unidirectional prokaryotic gene overlaps. Molecular Biology and Evolution. 27:753-756.
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2010.
NCBI BLASTplus integrated into Galaxy. Technical note. GigaScience. 4
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2015.
Cryptic photosynthesis - extrasolar planetary oxygen without a surface biological signature. Astrobiology. 9:623-636.
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2009.
Ozone and life on the Archaean earth. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1889-1901. Abstract
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2007.
Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
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2009.
Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.
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2010.
Comparison of two headspace sampling techniques for the analysis of off-flavour volatiles from oat based products. Food Chemistry. 134:1592-1600.
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2012.
Relationship between volative profile and sensory development of an oat based biscuit. Food Chemistry. 160:72-81.
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2014.
Tackling the challenge of interdisciplinary energy research: A research toolkit. Energy Research and Social Sciences. 74:ArticleNo.101966.
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2021.
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2016.
Desynaptic5 carries a spontaneous semi-dominant mutation affecting Disrupted Meiotic cDNA 1 (DMC1) in barley. Journal of Experimental Botany. 70:2683-2698.
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2019.
Observation of extensive chromosome axis remodeling during the "diffuse-phase" of meiosis in large genome cereals. Frontiers in Plant Science. 8:ArticleNo.1235.
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2017.
The carotenoid biosynthetic and catabolic genes in wheat and their association with yellow pigments. BMC Genomics. 18:ArticleNo.122..
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2017.
Managing riparian buffer strips to optimise ecosystem services: a review. Agriculture, Ecosystems and Environment. 296:ArticleNo.UNSP106891.
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2020.
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2009.
Riparian field margins: their potential to enhance biodiversity in intensively managed grasslands. Insect Conservation and Diversity. 5:86-94.
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2012.
Riparian field margins: can they enhance the functional structure of ground beetle (Coleoptera: Carabidae) assemblages in intensively managed grassland landscapes? Journal of Applied Ecology. 49:1384-1395.
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2012.
Public attitudes and participation in wind turbine development. Journal of Environmental Assessment Policy and Management. 11(1):69-95.
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2009.
Assessment of public acceptability regarding wind turbine construction as perceived by environmental professionals. Journal of Environmental Assessment Policy and Management. 9(1):45-65.
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2007.
Ignoring IUPAC guidelines for measurement and reporting of stable isotope abundance values affects us all. Rapid Communications in Mass Spectrometry.
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2014.
Income elasticities for food, calories and nutrients across Africa: a meta-analysis. Food Policy. 77:116-132.
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2018.
Phenotypical and molecular characterization of Tomato mottle Taino virus - Nicotiana megalosiphon interaction. Physiological and Molecular Plant Pathology. 67:231-236. Abstract
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2006.
Human biomonitoring as a tool for exposure assessment in industrially contaminated sites (ICS). Lessons learnt within the ICS and Health European Network. Epidemiologia e Prevenzione. 43:249-259.
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2019.
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2016.
Then and now: Examining older people’s engagement in outdoor recreation across the life course. Leisure Sciences. Published online..
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2017.
Understanding knowledge-workers’ interactions with workplace greenspace: open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. Published online..
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2016.
Natural places: Perceptions of wildness and attachment to local greenspace. Journal of Environmental Psychology. 61:71-78.
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2019.
Understanding knowledge-workers’ interactions with workplace greenspace: open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. 49:314-338.
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2017.
Understanding knowledge-workers’ interactions with workplace greenspace: Open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. Published online..
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2016.
Then and now: Examining older people’s engagement in outdoor recreation across the life course. Leisure Sciences. 41:186-202.
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2019.
Mitigating diffuse pollution from agriculture: International approaches and experience. Science of the Total Environment. 468-469:1173-1177.
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2014.
Nitrogen deficiency in barley (Hordeum vulgare) seedlings induces molecular and metabolic adjustments that trigger aphid resistance. Journal of Experimental Botany.. 66:3639-3655.
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2015.
WHIRLY1 functions in the control of responses to nitrogen deficiency but not aphid infestation in barley. Plant Physiology. 168:1140-1151.
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2015.
Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theoretical and Applied Genetics. 122:523-531.
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2011.
Mapping adaptation of barley to droughted environments. Euphytica. 161:35-45. Abstract
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2008.
Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
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2009.
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2012.
Mixed model association scans of multi-environmental trial data reveal major loci controlling yield and yield related traits in Hordeum vulgare in Mediterranean environments. Theoretical and Applied Genetics. 122:1363-1373.
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2011.
A methodological approach to understanding the wellbeing and restorative benefits associated with greenspace. Urban Forestry and Urban Greening. 19:103-109.
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2016.
Exploring landscape engagement through a participatory touch table approach. Social Sciences. 6
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2017.
A comparison of active navigation and passive observation of desktop models of future built environments. Design Studies. 31(5):419-438.
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2010.
Management and spatial resolution effects on yield and water balance at regional scale in crop models. Agricultural and Forest Meteorology. 275:184-195.
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2019.
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2013.
Interrogating participatory catchment organisations: cases from Canada, New Zealand, Scotland and the Scottish-English Borderlands. Geographical Journal. 179:234-247.
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2013.
Transcriptome sequencing of an ecologically important graminivorous sawfly: a resource for marker development. Conservation Genetics Resources. 3:789-795.
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2011.
Estimation of multiple transmission rates for epidemics in heterogeneous populations. Proceedings of the National Academy of Sciences, USA. 104:20392-20397. Abstract
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2007.
Tracking the sudden oak death pathogen. Molecular Ecology. 16:3735-3736.
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2007.
Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathogens. 8:e1002940.
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2012.
Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina. Forest Pathology. 35:57-70. Abstract
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2005.
Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract
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2007.
The pros and cons of ITS-based phylogenetic analysis for the genus Phytophthora: current status and future vision. Phytopathology. 96:S134-S134.
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2006.
Impacts of artificial structures on the freshwater pearl mussel Margaritifera margaritifera in the River Dee, Scotland. Aquatic Conservation: Marine and Freshwater Ecosystems. 22:318-330.
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2012.
Carbon mineralization kinetics and soil biological characteristics as influenced by manure addition in soil incubated at a range of temperatures. European Journal of Soil Biology. 47:392-399.
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2011.
Factors influencing the release of dissolved organic carbon and dissolved forms of nitrogen from a small upland headwater during autumn runoff events. Hydrological Processes. 21(5):622-633.
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2007.
The effect of root exudates on rhizosphere water dynamics. Proceeding Royal Society A. 474:ArticleNo.20180149.
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2018.
The effect of root exudates on rhizosphere water dynamics. Proceeding Royal Society A. 474:ArticleNo.20180149.
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2018.
Assessing the variation in manganese use efficiency traits in Scottish barley landrace bere (Hordeum vulgare L.). Annals of Botany. Published online.
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2020.
Identifying potential novel resistance to the foliar disease ‘Scald’ (Rhynchosporium commune) in a population of Scottish Bere barley landrace (Hordeum vulgare L.). Journal of Plant Diseases and Protection. Published online.
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2021.
Identification of a new quorum-sensing-controlled virulence factor in Erwinia carotovora subsp. atroseptica secreted via the type II targeting pathway. Molecular Plant-Microbe Interactions. 18:334-342. Abstract
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2005.
Size, structure and nitrogen content of seeds of Fabaceae in relation to nodulation. Botanical Journal of the Linnean Society. 167:251-280.
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2011.
Impacts of the coronavirus pandemic on biodiversity conservation. Biological Conservation. 246:ArticleNo.UNSP108571.
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2020.
Europe-wide dampening of population cycles in keystone herbivores. Science. 340:63-66.
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2013.
Estimating the annual number of breeding attempts from breeding dates using mixture models. Ecology Letters. 12:1184-1193.
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2009.
Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution. 2:86-94.
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2011.
Inorganic carbon physiology underpins macroalgal responses to elevated CO2. Scientific Reports. 7:ArticleNo.46297.
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2017.
Integrated proteomics and metabolomics to unlock global and clonal responses of Eucalyptus globulus recovery from water deficit. Metabolomics. 12:ArticleNo.141.
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2016.
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2018.
Depicting how Eucalyptus globulus survives drought: involvement of redox and DNA methylation events. Functional Plant Biology. 43:838-850.
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2016.
Combined drought and heat activates protective responses in Eucalyptus globulus that are not activated when subjected to drought or heat stress alone. Frontiers in Plant Science. 9:ArticleNo.819.
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2018.
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2017.
First report of potato cyst nematode Globodera rostochiensis, infecting potato (Solanum tuberosum) in Uganda. Plant Disease. 104:3082-3083.
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2020.
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2012.
Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract
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2006.
Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
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2007.
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2010.
Mapping land cover from detailed aerial photography data using textural and neural network analysis. International Journal of Remote Sensing. 28(7):1625-1642.
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2007.
Mapping land cover from detailed aerial photography data using textural and neural network analysis. International Journal of Remote Sensing. 28(7-8):1625-1642.
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2007.
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2014.
Gas chromatographic metabolic profiling: A sensitive tool for functional microbial ecology. Journal of Microbiological Methods. 75:491-500. Abstract
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2008.
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2021.
Characterisation of barley resistance to rhynchosporium on chromosome 6HS. Theoretical and Applied Genetics. 132:1089-1107.
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2019.
DsbA plays a critical and multifaceted role in the production of secreted virulence factors by the phytopathogen, Erwinia carotovora subsp. atroseptica. Journal of Biological Chemistry. 283:23739-23753. Abstract
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2008.
The role of natural heritage in rural development: an analysis of economic linkages in Scotland. Journal of Rural Studies. 22(4):469-484.
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2006.
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2009.
Evaluation of the efficacy of clinical diagnosis of ovine pulmonary adenocarcinoma. Veterinary Record. 162:88-90. Abstract
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2008.
Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. Applied and Environmental Microbiology. 79:4421-4432.
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2013.
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2012.
Potato mop-top virus co-opts the stress sensor HIPP26 for long-distance movement. Plant Physiology. 176:2052-2070.
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2018.
Factors affecting the restoration of heathland and acid grassland on Pteridium aquilinum-infested land across the UK: a multi site study. Restoration Ecology. 16(4):553-562.
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2008.
A multi-site assessment of the effectiveness of Pteridium aquilinum control in Great Britain. Applied Vegetation Science. 10:429-440.
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2007.
Prior host feeding experience influences ovipositional but not feeding preference in a polyphagous insect herbivore. Entomologia Experimentalis et Applicata. 138:137-145.
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2011.
Shopping versus being in nature? An exploratory study of everyday experiences Frontiers in Psychology. 9:Article9.
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2018.
The North East Scotland Energy Monitoring Project: Exploring relationships between household occupants and energy usage. Energy and Buildings. 75:493-503.
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2014.
Transmission of pro-environmental norms in large organizations. Sustainable Production and Consumption. 19:25-32.
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2019.
The influences of actual and perceived familiarity on environmental preferences for the design of a proposed urban square. Urban Studies Research, Article id 767048, 9pp..
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2012.
Shopping versus being in nature? An exploratory study of everyday experiences Frontiers in Psychology.
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2018.
Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
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2009.
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2011.
An inter-laboratory comparison of multi-enzyme and multiple substrate-induced respiration assays to assess method repeatability in soil monitoring. Biology and Fertility of Soils. 45(6):623-633.
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2009.
Community energy: entanglements of community, state and private sectors. Geography Compass. 12:ArticleNo.e12378.
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2018.
Do elevated soil concentrations of metals affect the diversity and activity of soil invertebrates in the long-term? Soil Use and Management. 24(1):27-46.
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2008.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. Published online..
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2016.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. 132:210-233.
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2016.
The contribution of healthcare smart homes to older people's wellbeing: a new conceptual framework. Wellbeing, Space and Society. 2:ArticleNo.100031.
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2021.
A two-point method for determining the soil water characteristic of typical northern temperate boreal soils. Geoderma Regional. 5:71-76.
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2015.
Re-establishment of Calluna vulgaris (L.) Hull in an eight-year grazing experiment on upland acid grassland. Journal of Nature Conservation. 21:22-30.
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2013.
Lichen response to ammonia deposition defines the footprint of a penguin rookery. Biogeochemistry. 122:295-311.
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1992.
Lichen response to ammonia deposition defines the footprint of a penguin rookery. Biogeochemistry. 122:295-311.
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2015.
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2009.
The interactive responses of water quality and hydrology to changes in multiple stressors, and implications for the long-term effective management of phosphorus. Science of the Total Environment. 454:230-244.
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2013.
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2016.
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2016.
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2015.
Bats like vintage: managing exotic eucalypt plantations for bat conservation in a Mediterranean landscape. Animal Conservation. 19:53-64.
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2016.
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2020.
A metabolic regulator modulates virulence and quorum sensing signal production in Pectobacterium atrosepticum. Molecular Plant Microbe Interactions. 26:356-366.
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2013.
Heading date QTL in a spring x winter barley cross evaluated in Mediterranean environments. Molecular Breeding. 21:455-471. Abstract
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2008.
Concentrations and uptake pathways of polychlorinated biphenyls from soil to grass. Ecotoxicology and Environmental Safety. 182:ArticleNo.109428.
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2019.
Modeling primary and secondary fractionation effects and atmospheric transport of polychlorinated biphenyls through single-source emissions. Environmental Geochemistry and Health. 41:1939-1951.
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2019.
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2020.
Effects of season and sediment-water exchange processes on the partitioning of pesticides in the catchment environment: Implications for pesticides monitoring. Science of the Total Environment. 698:ArticleNo.134228.
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2020.
Heavy metals in sediment from the urban and rural rivers in Harbin City, Northeast China. International Journal of Environmental Research and Public Health. 16:ArticleNo.4313.
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2019.
Polycyclic aromatic hydrocarbons in fresh snow in the city of Harbin in northeast China. Atmospheric Environment. 215
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2019.
Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape. Journal of the Science of Food and Agriculture. 88:2253-2264. Abstract
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2008.
Comparison of DNA walking methods for isolation of transgene flanking regions in GM potato. Molecular Biotechnology. 49:19-31.
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2011.
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2007.
Detection of the nec1 virulence gene and its correlation with pathogenicity in Streptomyces species on potato tubers and in soil using conventional and realtime PCR. Journal of Applied Microbiology. 102:1082-1094. Abstract
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2007.
Use of quantitative molecular diagnostic assays to investigate Fusarium dry rot in potato stocks and soil. Phytopathology. 95:1462-1471. Abstract
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2005.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
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2009.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology. 11(10):2510-2525.
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2009.
Effector-decoy pairs: another countermeasure emerging during host-microbe co-evolutionary arms races? Molecular Plant. 10:662-664.
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2017.
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2011.
Converting Australian tropical rainforest to native Araucariaceae plantations alters soil fungal communities. Soil Biology and Biochemistry. 42(1):14-20.
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2010.
Five years of simulated atmospheric nitrogen deposition have only subtle effects on the fate of newly synthesized carbon in Calluna vulgaris and Eriophorum vaginatum. Soil Biology and Biochemistry. 43:495-502.
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2011.
Turnover of labile and recalcitrant soil carbon differ in response to nitrate and ammonium deposition in an ombrotrophic peatland. Global Change Biology. 16(8):2307-2321.
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2010.
Outdoor recreation for older adults in Scotland: qualitatively exploring the multiplicity of constraints to participation. International Journal of Environmental Research and Public Health. 18:ArticleNo.7705.
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2021.
Greenspace matters: exploring links between greenspace, gender and well-being with conservation volunteers. Landscape Research. 41:641-651.
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2016.
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2015.
Differentiating outdoor recreation: evidence drawn from national surveys in Scotland. Journal of Policy Research in Tourism, Leisure and Events. 2(1):29-50.
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2010.
A method-centric 'User Manual' for the mitigation of diffuse water pollution from agriculture. Soil Use and Management. 32:162-171.
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2016.
Pore shape and organic compounds drive major changes in the hydrological characteristics of agricultural soils. European Journal of Soil Science. 64:334-344.
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2013.