Publications list
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The plant cell wall: a complex and dynamic structure as revealed by the responses of genes under stress conditions. Frontiers in Plant Science. 7
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2016.
Product stability and sequestration mechanisms in Solanum tuberosum engineered to biosynthesize high value ketocarotenoids. Plant Biotechnology Journal. 14:140-152.
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2016.
A proposal for classification of non-urban regions in the European Union. Cuadernos Geograficos. 55:92-124.
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2016.
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2016.
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2016.
Regional trends in Scottish advisory soil acidity and phosphorus results: significance of management history, land use and soil attributes. Soil Use and Management. 32:44-53.
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2016.
The relative performance of AIC, AIC(C) and BIC in the presence of unobserved heterogeneity. Methods in Ecology and Evolution.
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2016.
Reply to comment on: Vegetation burning for game management in the UK uplands is increasing and overlaps spatially with soil carbon and protected areas. Biological Conservation. 195:295-296.
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2016.
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2016.
The rise and rise of halloysite. Clay Minerals. 51:303-308.
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2016.
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2016.
Scale-dependent effects of coppicing on the species pool of late successional beech forests in the central Apennines, Italy. Applied Vegetation Science. 19:474-485.
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2016.
Seasonal dynamics of the soil microbial community: assimilation of old and young carbon sources in a long-term field experiment as revealed by natural C-13 abundance. European Journal of Soil Science. 67:79-89.
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2016.
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2016.
Seroprevalence of respiratory viral pathogens of indigenous calves in Western Kenya. Research in Veterinary Science. 108:120-124.
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2016.
Soil amendment affects Cd uptake by wheat - are we underestimating the risks from chloride inputs? Science of the Total Environment. 554:349-357.
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2016.
Soil and tree biomass carbon sequestration potential of silvopastoral and woodland pasture systems in North East Scotland. Agroforestry Systems. 90:371-383.
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2016.
Soil carbon and nitrogen and barley yield responses to repeated additions of compost and slurry. Journal of Agricultural Science. Published online..
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2016.
Soil nitrogen availability alters rhizodeposition carbon flux into the soil microbial community. Journal of Soils and Sediments. 16:1472-1480.
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2016.
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2016.
Sorption and desorption of cadmium and zinc in two tropical soils amended with sugarcane-straw-derived biochar. Journal of Soils and Sediments. 16:226-234.
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2016.
Spatial sampling of weather data for regional crop yield simulations. Agricultural and Forest Meteorology. 220:101-115.
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2016.
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2016.
Stability of small ubiquitin-like modifier (SUMO) proteases OVERLY TOLERANT TO SALT1 and-2 modulates salicylic acid signalling and SUMO1/2 conjugation in Arabidopsis thaliana. Journal of Experimental Botany. 67:353-363.
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2016.
Terrestrial nitrogen cycling in earth system models revisited. New Phytologist. 210:1165-1168.
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2016.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. Published online..
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2016.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. 132:210-233.
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2016.
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2016.
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2016.
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2016.
Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research. 198:80-92.
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2016.
Understanding knowledge-workers’ interactions with workplace greenspace: Open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. Published online..
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2016.
Understanding knowledge-workers’ interactions with workplace greenspace: open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. Published online..
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2016.
The unfolded protein response and programmed cell death are induced by expression of garlic virus X p11 in Nicotiana benthamiana. Journal of General Virology. 97:1462-1468.
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2016.
Using historical climate observations to understand future climate change crop yield impacts in the Southeastern US. Climatic Change. 134:311-326.
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2016.
Using mental models to understand soil management. Soil Use and Management.
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2016.
Using mental models to understand soil management. Soil Use and Management. 32:36-44.
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2016.
Using nematode communities to test a European scale soil biological monitoring programme for policy development. Applied Soil Ecology. 97:78-85.
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2016.
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2016.
Variable rate nitrogen fertilizer response in wheat using remote sensing. Precision Agriculture. 17:168-182.
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2016.
Visualisation techniques to support public interpretation of future climate change and land use choices: a case study from N-E Scotland. International Journal of Digital Earth. 9:586-605.
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2016.
Visualisation techniques to support public interpretation of future climate change and land use choices: a case study from NE Scotland. International Journal of Digital Earth. Published online..
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2016.
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2016.
Inter-pregnancy weight change and the risk of recurrent pregnancy complications. PLoS ONE. 11:e0154812.
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2016.
Achieving on-farm practice change through facilitated group learning: evaluating the effectiveness of monitor farms and discussion groups. Journal of Rural Studies. 56:1-11.
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2017.
Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. Published online..
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2017.
Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. Published online..
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2017.
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2017.
Algae as nutritional and functional food sources: revisiting our understanding. Journal of Applied Phycology. 29:949-982.
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2017.
The algal revolution. Trends in Plant Science. 22:726-738.
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2017.
Architecture and permeability of post-cytokinesis plasmodesmata lacking cytoplasmic sleeves. Nature Plants. 3:ArticleNo.17082.
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2017.
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2017.
Asynchrony among local communities stabilises ecosystem function of metacommunities. Ecology Letters. 20:1534-1545.
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2017.
Availability and dose response of phytophenols from a wheat bran rich cereal product in healthy human volunteers. Molecular Nutrition and Food Research. 61:ArticleNo.UNSP1600202.
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2017.
Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility. Nature Communications. 8:ArticleNo.936.
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2017.
Baseline simulation for global wheat production with CIMMYT mega-environment specific cultivars. Field Crops Research. 202:122-135.
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2017.
Breeding histories and selection criteria for oilseed rape in Europe and China identified by genome wide pedigree dissection. Scientific Reports. 7:ArticleNo.1916.
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2017.
British Escherichia coli O157 in Cattle Study (BECS): to determine the prevalence of E-coli O157 in herds with cattle destined for the food chain. Epidemiology and Infection. 145:3168-3179.
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2017.
BTB-BACK domain protein POB1 suppresses immune cell death by targeting ubiquitin E3 ligase PUB17 for degradation. PLoS Genetics. 13:e1006540.
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2017.
The carotenoid biosynthetic and catabolic genes in wheat and their association with yellow pigments. BMC Genomics. 18:ArticleNo.122..
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2017.
Challenges to enabling and implementing Natural Flood Management in Scotland. Journal of Flood Risk Management. Published online..
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2017.
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2017.
Characterization of Phytophthora infestans populations in northwestern Algeria during 2008-2014. Fungal Biology. 121:467-477.
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2017.
A chromosome conformation capture ordered sequence of the barley genome. Nature. 544:427-433.
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2017.
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2017.
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2017.
Compositional analysis of Scottish honeys with antimicrobial activity against antibiotic-resistant bacteria reveals novel antimicrobial components. LWT - Food Science and Technology. 79:52-59.
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2017.
Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytologist. 216:549-561.
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2017.
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data. 4:ArticleNo.170044.
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2017.
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data. 4:ArticleNo.170044.
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2017.
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2017.
Criteria for a system level evaluation of farm advisory services. Land Use Policy. 61:86-98.
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2017.
Crop establishment practices are a driver of the plant microbiota in winter oilseed rape (Brassica napus). Frontiers in Microbiology. 8:ArticleNo.1489.
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2017.
Crop model improvement reduces the uncertainty of the response to temperature of multi-model ensembles. Field Crops Research. 202:5-20.
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2017.
Crop model improvement reduces the uncertainty of the response to temperature of multi-model ensembles. Field Crops Research. 202:5-20.
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2017.
The database of the PREDICTS (Projecting Responses of ecological Diversity in Changing Terrestrial Systems). Ecology and Evolution. 7:145-188.
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2017.
The database of the PREDICTS (Projecting Responses of ecological Diversity in Changing Terrestrial Systems). Ecology and Evolution. 7:145-188.
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2017.
Denial of long-term issues with agriculture on tropical peatlands will have devastating consequences. Global Change Biology. 23:977-982.
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2017.
Denial of long-term issues with agriculture on tropical peatlands will have devastating consequences. Global Change Biology. 23:977-982.
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2017.
Designing future barley ideotypes using a crop model ensemble. European Journal of Agronomy. 82:144-162.
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2017.
Designing future barley ideotypes using a crop model ensemble. European Journal of Agronomy. 82:144-162.
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2017.
Determining the effect of drying time on phosphorus release from agricultural soils under climate change scenarios. Journal of Environmental Quality. 46:1131-1136.
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2017.
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2017.
Differential expression of microRNAs and potential targets under drought stress in barley. Plant Cell and Environment. 40:11-24.
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2017.
Diversity of methodologies to experiment Integrated Pest Management in arable cropping systems: analysis and reflections based on a European network. European Journal of Agronomy. 83:86-99.
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2017.
Diversity of methodologies to experiment Integrated Pest Management in arable cropping systems: analysis and reflections based on a European network. European Journal of Agronomy. 83:86-99.
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2017.
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2017.
Effector-decoy pairs: another countermeasure emerging during host-microbe co-evolutionary arms races? Molecular Plant. 10:662-664.
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2017.
Effects of juice matrix and pasteurization on stability of black currant anthocyanins during storage. Journal of Food Science. 82:44-52.
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2017.
Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size. BMC Systems Biology. 11:ArticleNo.62.
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2017.
Exploring landscape engagement through a participatory touch table approach. Social Sciences. 6
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2017.
Food self-provisioning in Europe - an exploration of sociodemographic factors in five regions. Rural Sociology. Published online..
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2017.
Forty years of change in Scottish grassland vegetation: increased richness, decreased diversity and increased dominance. Biological Conservation. 212:327-336.
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2017.
A functional overview of conservation biological control. Crop Protection. 97:145-158.
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2017.
Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia. PLoS Pathogens. 13:ArticleNo.e1006252.
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2017.
Global change, parasite transmission and disease control: lessons from ecology. Philosophical Transactions of the Royal Society B, Biological Sciences. 372:ArticleNo.20160088.
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2017.
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing. Nucleic Acids Research. 45:5061-5073.
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2017.
High quality reference transcript datasets hold the key to transcript-specific RNA-seq analysis in plants. New Phytologist. 213:525-530.
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2017.
High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation. New Phytologist. Published online..
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2017.
High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation. New Phytologist. 216:124-135.
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2017.
Hot spots of wheat yield decline with rising temperatures. Global Change Biology. 23:24264-2472.
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2017.
Hybrid plants preserve unique genetic variation in the St Helena endemic trees Commidendrum rotundifolium DC Roxb. and C. spurium (G.Forst.) DC. Conservation Genetics. 18:241-246.
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2017.
Impact analysis of climate data aggregation at different spatial scales on simulated net primary productivity for croplands. European Journal of Agronomy. 88:41-52.
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2017.
Impact analysis of climate data aggregation at different spatial scales on simulated net primary productivity for croplands. European Journal of Agronomy. 88:41-52.
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2017.
The implication of input data aggregation on up-scaling soil organic carbon changes. Environmental Modelling and Software. 96:361-377.
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2017.
Implications of climate model biases and downscaling on crop model simulated climate change impacts. European Journal of Agronomy. 88:63-75.
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2017.
Inorganic carbon physiology underpins macroalgal responses to elevated CO2. Scientific Reports. 7:ArticleNo.46297.
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2017.
It is elemental: soil nutrient stoichiometry drives bacterial diversity. Environmental Microbiology. 19:1176-1188.
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2017.
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2017.
Leaf dry matter content is better at predicting above-ground net primary production than specific leaf area. Functional Ecology. 31:1336-1344.
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2017.
Life at the boundary: photosynthesis at the soil-fluid interface. A synthesis focusing on mosses (vol 67, page 1613, 2016). Correction. Journal of Experimental Botany. 68:5247.
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2017.
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2017.
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2017.
Major agricultural changes required to mitigate phosphorus losses under climate change. Nature Communications. 8:ArticleNo,161.
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2017.
Major agricultural changes required to mitigate phosphorus losses under climate change. Nature Communications. 8:ArticleNo,161.
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2017.
Mapping and expression of genes with a role in raspberry fruit ripening and softening. Theoretical and Applied Genetics. 130:557-572..
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2017.
Mapping loci that control tuber and foliar symptoms caused by PVY in autotetraploid potato (Solanum tuberosum L.). G3-Genes Genomes Genetics. 7:3587-3595.
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2017.
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2017.
Metrics for evaluating the ecological benefits of decreased nitrogen deposition. Biological Conservation. 212:454-463.
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2017.
Mitochondrial genome diversity in dagger and needle nematodes (Nematode: Longidoridae). Scientific Reports. 7
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2017.
Mitochondrial genomes diversity in dagger and needle nematodes (Nematode: Longidoridae). Scientific Reports. 7
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2017.
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2017.
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2017.
Molecular characterization of novel Bradyrhizobium strains nodulating ErioSema Chinese and Flemingia vestita, important unexplored native legumes of the sub-Himalayan region (Meghalaya) of India. Systematic and Applied Microbiology. 40:334-344.
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2017.
Multi-technique approach to the petrophysical characterization of Berea sandstone core plugs (Cleveland Quarries, USA). Journal of Petroleum Science and Engineering. 149:436-455.
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2017.
New knowledge networks of small-scale farmers in Europe’s periphery. Land Use Policy. 63:428-439.
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2017.
Novel colon-available triterpenoids identified in raspberry fruits exhibit antigenotoxic activities in vitro. Molecular Nutrition and Food Research. 61:ArticleNo.1600327.
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2017.
Observation of extensive chromosome axis remodeling during the "diffuse-phase" of meiosis in large genome cereals. Frontiers in Plant Science. 8:ArticleNo.1235.
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2017.
Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance. Proceedings of the Royal Society B, Biological Sciences. 284:ArticleNo.1860.
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2017.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
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2017.
Plant functional connectivity - integrating landscape structure and effective dispersal. Journal of Ecology. 105:1648-1656.
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2017.
Polyphenols journey through blood-brain barrier towards neuronal protection. Scientific Reports. 7:ArticleNo.11456.
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2017.
Priorities for research in soil ecology. Pedobiologia. 63:1-7.
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2017.
Prospects for plant defence activatiors and biocontrol in IPM - concpets and lessons learnt so far. Crop Protection. 97:128-134.
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2017.
A randomised controlled trial comparing a dietary antiplatelet, the water-soluble tomato extract Fruitflow, with 75mg aspirin in healthy subjects. European Journal of Clinical Nutritiion. 71:723-730.
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2017.
Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding. Journal of Experimental Botany. 68:4709-4723.
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2017.
Reducing stomatal density in barley improves drought tolerance without impacting on yield. Plant Physiology. 174:776-787.
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2017.
Relationships between understory specialist species and local management practices in coppiced forests - evidence from the Italian Apennines. Forest Ecology and Management. 385:35-45.
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2017.
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2017.
Root hair mutations displace the barley rhizosphere microbiota. Frontiers in Plant Science.. 8:ArticleNo.1094.
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2017.
Soil carbon 4 per mille. Geoderma. 292:59-86.
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2017.
Soil carbon 4 per mille. Geoderma. 292:59-86.
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2017.
Soil carbon and nitrogen and barley yield responses to repeated additions of compost and slurry. Journal of Agricultural Science. 155:144-155.
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2017.
Soil organic carbon (SOC) equilibrium and model initialisation methods: an application to the Rothamsted carbon (RothC) model. Environmental Modeling and Assessment. 22:215-239.
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2017.
Straw amendment to paddy soil stimulates denitrification but biochar amendment promotes anaerobic ammonia oxidation. Journal of Soils and Sediments..
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2017.
Straw amendment to paddy soil stimulates denitrification but biochar amendment promotes anaerobic ammonia oxidation. Journal of Soils and Sediments. 17:2428-2437.
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2017.
Susceptibility of Macrosiphum euphorbiae to the parasitoid Aphidius ervi: larval development depends on host aphid genotype. Entomologia Experimentalis et Applicata. 162:148-158.
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2017.
The susceptibility of selected conifer foliage to infection with Phytophthora lateralis. Forest Pathology. 47:ArticleNo.e12333.
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2017.
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2017.
Swimming and twitching motility are essential for attachment and virulence of Pantoea ananatis in onion seedlings. Molecular Plant Pathology. 18:734-745.
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2017.
Testing scenarios to achieve workplace sustainability goals using backcasting nad agent-based modeling. Environment and Behavior. 49:1007-1037.
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2017.
Then and now: Examining older people’s engagement in outdoor recreation across the life course. Leisure Sciences. Published online..
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2017.
TSIS: an R package to infer alternative splicing isoform switches for time-series data. Bioinformatics. 33:3308-3310.
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2017.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
Understanding knowledge-workers’ interactions with workplace greenspace: open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. 49:314-338.
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2017.
A view not to be missed: Salient scene content interferes with cognitive restoration. PLoS ONE. 12:e0169997.
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2017.
Visual soil evaluation: a summary of some applications and potential developments for agriculture. Soil and Tillage Research. 173:114-124.
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2017.
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2017.
Vulnerability of the British swine industry to classical swine fever. Scientific Reports. 7
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2017.
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2017.
Zinc for better crop production and human health. Plant and Soil. 411:1-4.
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2017.
Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. 159:260-274.
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2018.
Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. 159:260-274.
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2018.
AMOchar: Amorphous manganese oxide coating of biochar improves its efficiency at removing metal(loid)s from aqueous solutions. Science of the Total Environment. 625:71-78.
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2018.
Assessing national nutrition security: The UK reliance on imports to meet population energy and nutrient recommendations. PLoS ONE. 13:ArticleNo.e0192649.
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2018.
BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
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2018.
BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
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2018.
Bioconda: A sustainable and comprehensive software distribution for the life sciences. Nature Methods. 15:475-476.
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2018.
Biodiversity gains? The debate on changes in local- vs global-scale species richness Biological Conservation. 219:A1-A3.
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2018.
Carbon, water and energy exchange dynamics of a young pine plantation forest during the initial fourteen years of growth. Forest Ecology and Management. 410:12-26.
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2018.
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2018.
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2018.
Challenges to enabling and implementing Natural Flood Management in Scotland. Journal of Flood Risk Management. 11:S1078-S1089.
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2018.
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2018.
Characterization of surface water isotope spatial patterns of Scotland. Journal of Geochemical Exploration. 194:71-80.
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2018.
Classifying multi-model wheat yield impact response surfaces showing sensitivity to temperature and precipitation change. Agricultural Systems. 159:209-224.
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2018.
Classifying multi-model wheat yield impact response surfaces showing sensitivity to temperature and precipitation change. Agricultural Systems. 159:209-224.
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2018.
Co-occurrence of defensive traits in the potato aphid Macrosiphum euphorbiae. Ecological Entomology. 43:538-542.
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2018.
Combined drought and heat activates protective responses in Eucalyptus globulus that are not activated when subjected to drought or heat stress alone. Frontiers in Plant Science. 9:ArticleNo.819.
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2018.
Community energy: entanglements of community, state and private sectors. Geography Compass. 12:ArticleNo.e12378.
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2018.
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2018.
Comparative genetic mapping reveals synteny and collinearity between the American cranberry and diploid blueberry genomes. Molecular Breeding. 38:ArticleNo.9.
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2018.
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2018.
Contribution of crop model structure, parameters and climate projections to uncertainty in climate change impact assessments. Global Change Biology. 24:1291-1307.
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2018.
Defining and delivering resilient ecological networks: nature conservation in England. Journal of Applied Ecology. Published online..
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2018.
Defining and delivering resilient ecological networks: nature conservation in England. Journal of Applied Ecology. 55:2537-2543.
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2018.
Developing surface water flood forecasting capabilities in Scotland: an operational pilot for the 2014 Commonwealth Games in Glasgow. Journal of Flood Risk Management. 11:S884-S901.
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2018.
Digital RGB photography and visible-range spectroscopy for soil composition analysis. Geodrma. 313:265-275.
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2018.
Does work-life balance affect pro-environmental behaviour? Evidence for the UK using longitudinal microdata Ecological Economics. 145:170-181.
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2018.
Draft genome sequence for the tree pathogen Phytophthora plurivora. Genome Biology and Evolution. 10:2432-2442.
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2018.
Dynamics of microbial biomass and community composition after short-term water status change in Chinese paddy soils. Environmental Science and Pollution Research. 25:2932-2941.
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2018.
Effect of carbon limitation on photosynthetic electron transport in Nannochloropsis oculata. Journal of Photochemistry and Photobiology, B -Biology.
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2018.
The effect of root exudates on rhizosphere water dynamics. Proceeding Royal Society A. 474:ArticleNo.20180149.
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2018.