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Colasuonno P, Lozito ML, Marcotuli I, Nigro D, Giancaspro A, Mangini G, De Vita P, Mastrangelo AM, Pecchioni N, Houston K et al..  2017.  The carotenoid biosynthetic and catabolic genes in wheat and their association with yellow pigments. BMC Genomics. 18:ArticleNo.122..
Chan FCC, Arain MA, Khomik M, Brodeur JJ, Peichl M, Restrepo-Coupe N, Thorne R, Beamesderfer E, McKenzie S, Xu B et al..  2018.  Carbon, water and energy exchange dynamics of a young pine plantation forest during the initial fourteen years of growth. Forest Ecology and Management. 410:12-26.
Chapman SJ, Bell JS, Donnelly D, Lilly A.  2009.  Carbon stocks in Scottish peatlands. Soil Use and Management. 25:105-112.
Ovando P, Beguería S, Campos P.  2019.  Carbon sequestration or water yield? The effect of payments for ecosystem services on forest management decisions in Mediterranean forests Water Resources and Economics. 28:ArticleNo.100119.
Cooper JM, Burton D, Daniell TJ, Griffiths BS, Zebarth BJ.  2011.  Carbon mineralization kinetics and soil biological characteristics as influenced by manure addition in soil incubated at a range of temperatures. European Journal of Soil Biology. 47:392-399.
Bradford MA, Tordoff GM, Black HIJ, Cook R, Eggers T, Garnett MH, Grayston SJ, Hutcheson KA, Ineson P, Newington JE et al..  2007.  Carbon dynamics in a model grassland with functionally different soil communities. Functional Ecology. 21(4):690-697.
Garratt MPD, Potts SG, Banks G, Hawes C, Breeze TD, O'Connor RS, Carvell C.  2019.  Capacity and willingness of farmers and citizen scientists to monitor crop pollinators and pollination services. Global Ecology and Conservation. 20:ArticleNo.e00781.
Dunn SM, Johnston L, Taylor C, Watson H, Cook Y, Langan SJ.  2013.  Capability and limitations of a simple grid-based model for simulating land use influences on stream nitrate concentrations. Journal of Hydrology. 507:110-123.
Hedley PE, Russell JR, Jorgensen L, Gordon S, Morris JA, Hackett CA, Cardle L, Brennan RM.  2010.  Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.). BMC Plant Biology. 10:-202.
Waylen KA, Martin-Ortega J, Blackstock KL, Brown I, Uribe BEA, Hernández SB, Bertoni MB, Bustos ML, Bayer AXC, Semerena RIE et al..  2015.  Can scenario-planning support community based natural resource management? Experiences from three countries in Latin America Ecology and Society. 20:ArticleNo.28.
Duckett D, Wynne B, Christley RM, Heathwaite AL, Mort M, Austin Z, Wastling JM, Latham SM, Alcock R, Haygarth P.  2015.  Can policy be risk-based? The cultural theory of risk and the case of livestock disease containment Sociologia Ruralis. 55:379-399.
Quilliam RS, van Niekerk MA, Chadwick DR, Cross P, Hanley N, Jones DL, Vinten AJA, Olivers DM.  2015.  Can macrophyte harvesting from eutrophic water close the loop on nutrient loss from agricultural land? Journal of Environmental Management. 152:210-217.
Madigan A, Belka M, Taylor AFS, Kirisits T, Cleary M, Nguyen D, Elfstrand M, Woodward S.  2015.  Can Hymenoscyphus fraxineus infect hardy members of the Oleaceae other than ash species? Forest Pathology. 45:426-429.
Christen B, Kjeldsen C, Dalgaard T, Martin-Ortega J.  2015.  Can fuzzy cognitive mapping help in agricultural policy design and communication? Land Use Policy. 45:64-75.
Benvenutti MA, Coates DB, Bindelle J, Poppi DP, Gordon IJ.  2014.  Can faecal markers detect a short term reduction in forage intake by cattle? Animal Feed Science and Technology. 194:44-57.
Carrillo-Rechea J, Newton AC, Ferrando-Molina F, Quilliam RS.  2021.  Can 'on-farm' seed priming and chitosan seed treatments induce host defences in winter barley (Hordeum vulgare L.) under field conditions? Crops. 1:68-87.
Quin S, Artz RRE, Coupar AM, Woodin SJ.  2015.  Calluna vulgaris-dominated upland heathland sequesters more CO2 annually than grass-dominated upland heathland. Science of the Total Environment.. 505:740-747.
Barton CM, Alberti M, Ames D, Atkinson JA, Bales J, Burke E, Chen M, Diallo SY, Earn DJD, Fath B et al..  2020.  Call for transparency of COVID-19 models. Science. 368:482-483.
Love AJ, Yu CL, Petukhova NV, Kalinina NO, Chen JP, Taliansky ME.  2016.  Cajal bodies and their role in plant stress and disease responses. RNA Biology. 14:779-790.
Vanholme R, Cesarino I, Rataj K, Xiao Y, Sundin L, Goeminne G, Kim H, Cross J, Morreel K, Araujo P et al..  2013.  Caffeoyl Shikimate Esterase (CSE) is an enzyme in the lignin biosynthetic pathway. Science. 341:1103-1106.
Chaudri A, McGrath S, Gibbs P, Chambers B, Carlton-Smith C, Godley A, Bacon J, Campbell CD, Aitken M.  2007.  Cadmium availability to wheat grain in soils treated with sewage sludge or metal salts. Chemosphere. 66(8):1415-1423.
Bos JIB, Kanneganti T-D, Young C, Cakir C, Huitema E, Win J, Armstrong MR, Birch PRJ, Kamoun S.  2006.  The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant Journal. 48:165-176. Abstract
Yao HY, Chapman SJ, Thornton B, Paterson E.  2015.  C-13 PLFAs: a key to open the soil microbial black box? Plant and Soil. 392:3-15.
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Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, James EK, Sprent JI, Young JPW, Chen WM.  2012.  Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
Elliott GN, Chou JH, Chen WM, Bloemberg GV, Bontemps C, Martinez-Romero E, Velazquez E, Young JPW, Sprent JI, James EK.  2009.  Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environmental Microbiology. 11(4):762-778.
Bournaud C, de Faria S, Santos JMF, Tisseyre P, Silva M, Chaintreuil C, Gross E, James EK, Prin Y, Moulin L.  2013.  Burkholderia species are the most common and preferred nodulating symbionts of the Piptadenia group (Tribe Mimoseae). PLoS ONE. 8:e63478.
Liu WYY, Ridgway HJ, James TK, James EK, Chen WM, Sprent JI, Young JPW, Andrews M.  2014.  Burkholderia sp. induces functional nodules on the South African invasive legume Dipogon lignosus (Phaseoleae) in New Zealand soils. Microbial Ecology. 68:542-555.
Chen WM, de Faria SM, Chou JH, James EK, Elliott GN, Sprent JI, Bontemps C, Young JPW, Vandamme P.  2008.  Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia. International Journal of Systematic and Evolutionary Microbiology. 58(9):2174-2179.
Sheu SY, Chen MH, Liu WYY, Andrews M, James EK, Ardley JK, De Meyer SE, James TK, Howieson JG, Coutinho BG et al..  2015.  Burkholderia dipogonis sp. Nov., isolated from root nodules of Dipogon lignosus in New Zealand and Western Australia. International Journal of Systematic and Evolutionary Microbiology. 65:4716-4723.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, dos Reis Jr FB, Melkonian RJ, Moulin L, James EK, Sprent JI et al..  2013.  Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. International Journal of Systematic and Applied Microbiology. 63:435-441.
Breen C, Clegg F, Herron MM, Hild GP, Hillier S, Hughes TL, Jones TGJ, Matteson A, Yarwood J.  2008.  Bulk mineralogical characterisation of oilfield reservoir rocks and sandstones using diffuse reflectance infrared fourier transform spectroscopy and partial least squares analysis. Journal of Petroleum Science and Engineering. 60(1):1-17.
Plue J, Van Calster H, Auestad I, Basto S, Bekker RM, Bruun HH, Chevalier R, Decocq G, Grandin U, Hermy M et al..  2021.  Buffering effects of seed banks on plant community diversity in response to land use and climate. Global Ecology and Biogeography. 30:128-139.
Orosa B, He Q, Mesmar J, Gilroy EM, McLellan H, Yang CW, Craig A, Bailey M, Zhang CJ, Moore JD et al..  2017.  BTB-BACK domain protein POB1 suppresses immune cell death by targeting ubiquitin E3 ligase PUB17 for degradation. PLoS Genetics. 13:e1006540.
Henry MK, Tongue SC, Evans J, Webster C, McKendrick IJ, Morgan M, Willett A, Reeves A, Humphry RW, Gally DL et al..  2017.  British Escherichia coli O157 in Cattle Study (BECS): to determine the prevalence of E-coli O157 in herds with cattle destined for the food chain. Epidemiology and Infection. 145:3168-3179.
Henry MK, McCann CM, Evans J, Webster C, McKendrick IJ, Morgan M, Willett A, Reeves A, Humphry RW, Gally DL et al..  2019.  The British Escherichia coli 0157 in cattle study (BECS) : prevalence and factors associated with occurrence in British cattle populations. Cattle Practice. 27:109.
Campos P, Caparros A, Oviedo JL, Ovando P, Alvarez-Farizo B, Diaz-Balteiro L, Carranza J, Begueria S, Diaz M, Herruzo AC et al..  2019.  Bridging the gap between national and ecosystem accounting application in Andalusian Forests, Spain. Ecological Economics. 157:218-236.
Wang XH, Long Y, Wang N, Zou J, Ding GD, Broadley MR, White PJ, Yuan P, Zhang QW, Luo ZL et al..  2017.  Breeding histories and selection criteria for oilseed rape in Europe and China identified by genome wide pedigree dissection. Scientific Reports. 7:ArticleNo.1916.
Abbeloos R, Backlund JE, Basterrechea Salido M, Bauchet G, Benites-Alfaro O, Birkett C, Calaminos VC, Carceller P, Cornut G, Costa BV et al..  2019.  BrAPI - an Application Programming Interface for plant breeding applications. Bioinformatics. :ArticleNo.btz190.
Hutchins M, Urama K, Penning E, Icke J, Dilks C, Bakken T, Perrin C, Saloranta T, Candela L.  2006.  The BMW model evaluation tool: a guidance document. Archiv fur Hydrologie: Large Rivers Supplement. 17:23-48.
Figueira I, Tavares L, Jardim C, Costa I, Terrasso AP, Almeida AF, Govers CCFM, Mes JJ, Gardner R, Becker JD et al..  2019.  Blood-brain barrier permeability and neuroprotective potential of blackberry-digested polyphenols. European Journal of Nutrition. 58:113-130.
Cameron AR, Anton S, Melville L, Houston NP, Dayal S, McDougall GJ, Stewart D, Rena G.  2008.  Black tea polyphenols mimic insulin/insulin-like growth factor-1 signalling to the longevity factor FOXO1a. Aging Cell. 7:69-77. Abstract
Keith AM, van der Wal R, Brooker RW, Osler GHR, Chapman SJ, Burslem DFRP.  2006.  Birch invasion of heather moorland increases nematode diversity and trophic complexity. Soil Biology and Biochemistry. 38(12):3421-3430.
Chen WM, Prell J, James EK, Sheu D, Sheu S.  2012.  Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica. Microbiology. 158:1758-1766.
Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, Dalko A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B et al..  2009.  Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.
Menezes R, Foito A, Jardim C, Costa I, Garcia G, Rosado-Ramos R, Freitag S, Alexander CJ, Outeiro TF, Stewart D et al..  2020.  Bioprospection of natural sources of polyphenols with therapeutic potential for redox-related diseases. Antioxidants. 9:ArticleNo.789.
Holland JE, Hayes RC, Refshauge G, Poile J, Newell MT, Conyers MK.  2019.  Biomass, feed quality, mineral concentration and grain yield responses to potassium fertiliser of dual-purpose crops. New Zealand Journal of Agricultural Research. 62:476-494.
Li YY, Zhang Y, Chapman SJ, Yao HY.  2021.  Biological nitrification inhibition by sorghum root exudates impacts ammonia-oxidizing bacteria but not ammonia-oxidizing archaea. Biology and Fertility of Soils. 57:399-407.
Hallett PD, Lichner L, Cerda A.  2010.  Biohydrology: coupling biology and soil hydrology from pores to landscapes preface. Ecohydrology. 3:379-381.
Botnen SS, Davey ML, Aas AB, Carlsen T, Thoen E, Heegaard E, Vik U, Dresch P, Mundra S, Peintner U et al..  2019.  Biogeography of plant root-associated fungal communities in the North Atlantic region mirrors climatic variability. Journal of Biogeography. 46:1532-1546.
Lemaire B, Chimphango S, Stirton C, Rafundeen S, Honnay O, Smets E, Chen WM, Sprent JI, James EK, Muasya AM.  2016.  Biogeographical patterns of legume-nodulating Burkholderia spp.: from African Fynbos to continental scales. Applied and Environmental Microbiology. 82:5099-5115.
Primack RB, Miller-Rushing AJ, Corlett RT, Devictor V, Johns DM, Loyola R, Maas B, Pakeman RJ, Pejchar L.  2018.  Biodiversity gains? The debate on changes in local- vs global-scale species richness Biological Conservation. 219:A1-A3.
Grüning B, Dale R, Sjödin A, Chapman BA, Rowe J, Tomkins-Tinch CH, Valieris R, Caprez A, Batut B, Haudgaard M et al..  2018.  Bioconda: A sustainable and comprehensive software distribution for the life sciences. Nature Methods. 15:475-476.
Gallego-Sala AV, Clark JM, House JI, Orr HG, Prentice IC, Smith P, Farewell T, Chapman SJ.  2010.  Bioclimatic envelope model of climate change impacts on blanket peatland distribution in Great Britain. Climate Research. 45:151-162.
Talevich E, Invergo BM, Cock PJA, Chapman BA.  2012.  Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biophyton. BMC Bioinformatics. 13:209.
Sayanova O, Haslam R, Guschina I, Lloyd D, Christie WW, Harwood JL, Napier JA.  2007.  A bifunctional D12, D15-desaturase from Acanthamoeba castellanii directs the synthesis of highly unusual n-1 series unsaturated fatty acids. Journal of Biological Chemistry. 281:36533-36541. Abstract
Bennett AE, Preedy K, Golubski A, Umbanhower A, Borrett SR, Byrne L, Apostol K, Bever JD, Biederman L, Classen AT et al..  2019.  Beyond the black box: promoting mathematical collaborations for elucidating interactions in soil ecology. Ecosphere. 10:ArticleNo.e02799.
Hewitt RJ, Cremades R, Kovalevsky DV, Hasselmann K.  2021.  Beyond shared socioeconomic pathways (SSPs) and representative concentration pathways (RCPs): climate policy implementation scenarios for Europe, the US and China. Climate Policy. 21:434-454.
Gomes A, Oudot C, Macia A, Foito A, Carregosa D, Stewart D, van de Wiele T, Berry D, Motilva MJ, Brenner C et al..  2019.  Berry-enriched diet in salt-sensitive hypertensive rats: metabolic fate of (poly)phenols and the role of gut microbiota. Nutrients. 11:ArticleNo.2634.
Banwart S, Black HIJ, Cai ZC, Gicheru P, Joosten H, Victoria R, Milne E, Noellemeyer E, Pascual U, Nziguheba G et al..  2014.  Benefits of soil carbon: report on the outcomes of an international scientific committee on problems of the environment rapid assessment workshop. Carbon Management. 5:185-192.
Lane RA, Coxon G, Freer JE, Wagener T, Johnes PJ, Bloomfield JP, Greene S, Macleod CJA, Reaney SM.  2019.  Benchmarking the predictive capability of hydrological models for river flow and flood peak predictions across a large sample of catchments in Britain. Hydrology and Earth System Sciences. 23:4011-4032.
Biurrun I, Pielech R, Dembicz I, Gillet F, Kozub L, Marcenò C, Reitalu T, van Meerbeek K, Guarino R, Chytrý M et al..  2021.  Benchmarking plant diversity of Palaearctic grasslands and other open habitats. Journal of Vegetation Science. 32:ArticleNo.e13050.
Loe LE, Hansen BB, Stien A, Albon SD, Bischof R, Carlsson A, Irvine RJ, Meland M, Rivrud IM, Ropstad E et al..  2016.  Behavioral buffering of extreme weather events in a high- Arctic herbivore. Ecosphere. 7:1-13.
Loe LE, Hansen BB, Stien A, Albon SD, Bischof R, Carlsson A, Irvine RJ, Meland M, Rivrud IM, Ropstad E et al..  2016.  Behavioral buffering of extreme weather events in a high- Arctic herbivore. Ecosphere. 7:ArticleNo.e01374..
Cornulier T, Robinson RA, Elston DA, Lambin X, Sutherland WJ, Benton T.  2011.  Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution. 2:86-94.
Cruz J, Sarmento P, Rydevik G, Rebelo H, White PCL.  2016.  Bats like vintage: managing exotic eucalypt plantations for bat conservation in a Mediterranean landscape. Animal Conservation. 19:53-64.
Anderson IC, Bastias BA, Genney DR, Parkin PI, Cairney JWG.  2007.  Basidiomycete fungal communities in Australia sclerophyll forest soil are altered by repeated prescribed burning. Mycological Research. 111(4):482-486.
Gbegbelegbe S, Cammarano D, Asseng S, Robertson R, Chung U, Adam M, Abdalla O, Payne T, Reynolds M, Sonder K et al..  2017.  Baseline simulation for global wheat production with CIMMYT mega-environment specific cultivars. Field Crops Research. 202:122-135.
Rapazote-Flores P, Bayer M, Milne L, Mayer CD, Fuller J, Guo W, Hedley PE, Morris J, Halpin C, Kam J et al..  2019.  BaRTv1.0: a barley reference transcript dataset for quantitative measurement barley transcriptomes using RNA-seq. BMC Genomics. 20:ArticleNo.968.
Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M et al..  2013.  Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. Plant Journal. 76:494-505.
Torrance L, Cowan GH, Gillespie T, Ziegler A, Lacomme C.  2006.  Barley stripe mosaic virus-encoded proteins triple-gene block 2 and gb localise to chloroplasts in virus-infected monocot and dicot plants revealing hitherto-unknown roles in virus replication. Journal of General Virology. 87:2403-2411. Abstract
Bull H, Casao MC, Zwirek M, Flavell AJ, Thomas WTB, Guo WB, Zhang RX, Rapazote-Flores P, Kyriakidis S, Russell J et al..  2017.  Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility. Nature Communications. 8:ArticleNo.936.
Rostoks N, Schmierer D, Mudie S, Drader T, Brueggeman R, Caldwell DG, Waugh R, Kleinhofs A.  2006.  Barley necrotic locus nec1 encodes the cyclic nucleotide-gated ion channel 4 homologous to the Arabidopsis HLM1. Molecular Genetics and Genomics. 275:159-168. Abstract
Barakate A, Orr J, Schreiber M, Colas I, Lewandowska D, McCallum N, Macaulay M, Morris J, Arrieta M, Hedley PE et al..  2021.  Barley anther and meiocyte transcriptome dynamics in meiotic prophase I. Frontiers in Plant Science. 11:ArticleNo.619404.
Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Francia E, Pecchioni N, Li Destri O, Akar T et al..  2008.  Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.
Antunez-Lamas M, Cabrera E, Lopez-Solanilla E, Solano R, Gonzalez-Melendi P, Chico JM, Toth IK, Birch PRJ, Pritchard L, Liu H et al..  2009.  Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues. Molecular Microbiology. 74:662-671.
Izumi H, Cairney JWG, Killham K, Moore ERB, Alexander IJ, Anderson IC.  2008.  Bacteria associated with ectomycorrhizas of slash pine (Pinus elliottii) in south eastern Queensland, Australia. FEMS Microbiology Letters. 282(2):196-204.
Dudnik A, Almeida AF, Andrade R, Avila B, Banados P, Bassard JE, Benkoulouche M, Bott M, Braga A, Breitel D et al..  2018.  BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
Dudnik A, Almeida AF, Andrade R, Avila B, Banados P, Bassard JE, Benkoulouche M, Bott M, Braga A, Breitel D et al..  2018.  BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
A
Chen MH, Sheu SY, James EK, Young CC, Chen WM.  2013.  Azoarcus olearius sp.nov., a nitrogen-fixing bacterium isolated from oil-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. 63:3755-3761.
Neacsu M, McMonagle J, Fletcher RJ, Hulshof T, Duncan SH, Scobbie L, Duncan GJ, Cantlay L, Horgan G, de Roos B et al..  2017.  Availability and dose response of phytophenols from a wheat bran rich cereal product in healthy human volunteers. Molecular Nutrition and Food Research. 61:ArticleNo.UNSP1600202.
Peppa MV, Mills JP, Moore P, Miller PE, Chambers JE.  2019.  Automated co-registration and calibration in SfM photogrammetry for landslide change detection. Earth Surface Processes and Landforms. 44:287-303.
Pettitt TR, Keane GJ, John SOL, Cooke DEL, Zerjav M.  2019.  Atypical late blight symptoms following first recorded infections by Phytophthora infestans genotype EU_39_A1 in UK vine tomatoes. New Disease Reports. 39:ArticleNo.16.
Currie M, Philip L, Roberts A.  2015.  Attitudes towards the use and acceptance of eHealth technologies: a case study of older adults living with chronic pain and implications for rural healthcare. BMC Health Services Research. 15
Zhang RX, Calixto CPG, Tzioutziou NA, James AB, Simpson CG, Guo WB, Marquez Y, Kalyna M, Patro R, Eyras E et al..  2015.  AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist. 208:96-101.
Tipping E, Benham S, Boyle JF, Crow P, Davies J, Fischer U, Guyatt H, Helliwell RC, Jackson-Blake L, Lawlor AJ et al..  2014.  Atmospheric deposition of phosphorus to land and freshwater. Environmental Science: Processes and Impacts. 16:1608-1617.
Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A et al..  2006.  An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics. 6:202-211. Abstract
Wilcox KR, Tredennick AT, Koerner SE, Grman E, Hallett LM, Avolio ML, La Pierre KJ, Houseman GR, Isbell F, Johnson DS et al..  2017.  Asynchrony among local communities stabilises ecosystem function of metacommunities. Ecology Letters. 20:1534-1545.
Caron-Lormier G, Humphry RW, Bohan DA, Hawes C, Thorbek P.  2008.  Asynchronous and synchronous updating in individual-based models. Ecological Modelling. 212:522-527. Abstract
Sam L, Craig T, Horgan GW, Macdiarmid JI.  2019.  Association between hours worked in paid employment and diet quality, frequency of eating out and consuming takeaways in the UK. Public Health Nutrition. 22:3368-3376.
Quin SLO, Conolly TRA, Artz RRE, Coupar A, Woodin SJ.  2013.  The assimilation and retention of carbon in upland heath plant communities typical of contrasting management regimes: a 13C tracer study. Journal of Ecosystems. 2013
Vinten AJA, Loades K, Addy S, Richards S, Stutter MI, Cook Y, Watson H, Taylor C, Abel C, Baggaley N et al..  2014.  Assessment of the use of sediment fences for control of erosion and sediment phosphorus loss after potato harvesting on sloping land. Science of the Total Environment. 468-469:1234-1244.
Zak D, Stutter MI, Jensen HS, Egemose S, Carstensen MV, Audet J, Strand JA, Feuerbach P, Hoffmann CC, Christen B et al..  2019.  An assessment of the multifunctionality of integrated buffer zones in Northwestern Europe. Journal of Environmental Quality. 48:362-375.
Tingem M, Rivington M, Azam-Ali S, Colls J.  2007.  Assessment of the ClimGen stochastic weather generator at Cameroon sites. African Journal of Environmental Science and Technology. 1:86-92.
Coleby A, Aspinall PA, Miller DR.  2007.  Assessment of public acceptability regarding wind turbine construction as perceived by environmental professionals. Journal of Environmental Assessment Policy and Management. 9(1):45-65.
Card SD, Tapper BA, Lloyd-West C, Wright KM.  2013.  Assessment of fluorescein-based fluorescent dyes for tracing Neotyphodium endophytes in planta. Mycologia. 105:221-229.
Balana BB, Catacutan D, Makela M.  2013.  Assessing the willingness to pay for reliable domestic water supply via catchment management: results from a contingent valuation survey in Nairobi City, Kenya. Journal of Environmental Planning and Management. 56:1511-1531.
Clark JM, Gallego-Sala AV, Allott TEH, Chapman SJ, Farewell T, Freeman C, House JI, Orr HG, Prentice IC, Smith P.  2010.  Assessing the vulnerability of blanket peat to climate change using an ensemble of statistical bioclimatic envelope models. Climate Research. 45:131-150.
Cope JE, Russell J, Norton GJ, George TS, Newton AC.  2020.  Assessing the variation in manganese use efficiency traits in Scottish barley landrace bere (Hordeum vulgare L.). Annals of Botany. Published online.
Cammarano D, Fitzgerald GJ, Casa R, Basso B.  2014.  Assessing the robustness of vegetation indices to estimate wheat N in Mediterranean environments. Remote Sensing. 6:2827-2844.
Lees KJ, Khomik M, Quaife T, Clark JM, Hill T, Klein D, Ritson J, Artz RRE.  2021.  Assessing the reliability of peatland GPP measurements by remote sensing: from plot to landscape scale. Science of the Total Environment. 766:ArticleNo.142613.
Schena L, Cooke DEL.  2006.  Assessing the potential of regions of the nuclear and mitochondrial genome to develop a 'molecular tool box' for the detection and characterization of Phytophthora species. Journal of Microbiological Methods. 67:70-85. Abstract
Matos MS, Anastácio JD, Allwood JW, Carregosa D, Marques D, Sungurtas J, McDougall GJ, Menezes R, Matias AA, Stewart D et al..  2020.  Assessing the intestinal permeability and anti-inflammatory potential of sesquiterpene lactones from chicory. Nutrients. 12:ArticleNo.3547.
Beesley L, Inneh OS, Norton GJ, Moreno-Jimenez E, Pardo T, Clemente R, Dawson JJC.  2014.  Assessing the influence of compost and biochar amendments on the mobility and toxicity of metals and arsenic in a naturally contaminated mine soil. Environmental Pollution. 186:195-202.
O'Dochartaigh BEO, MacDonald AM, Griffiths KJ, Lilly A, DeGroote J, Chilton PJ, Hughes AG.  2007.  Assessing the effectiveness of Scotland's groundwater nitrate monitoring network. Quarterly Journal of Engineering Geology and Hydrogeology. 40(4):393-406.
Helliwell RC, Wright RF, Jackson-Blake LA, Ferrier RC, Aherne J, Cosby BJL, Evans CD, Forsius M, Hruska J, Jenkins A et al..  2014.  Assessing recovery from acidification of European surface waters in the year 2010: evaluation of projections made with the MAGIC model in 1995. Environmental Science and Technology. 48:13280-13288.
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Carvalho RF, Szakonyi D, Simpson CG, Barbosa ICR, Brown JWS, Baena-Gonzalez E, Duque P.  2016.  The arabidopsis SR45 splicing factor, a negative regulator of sugar signaling, modulates SNF1-related protein kinase 1 stability. Plant Cell. 28:1910-1925.
Simpson CG, Lewandowska D, Liney M, Davidson D, Chapman S, Fuller J, McNicol J, Shaw P, Brown JWS.  2014.  Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially. New Phytologist. 203:424-436.
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Laing R, Davies AM, Miller DR, Conniff A, Scott S, Morrice JG.  2009.  The application of visual environmental economics in the study of public preference and urban greenspace. Environment and Planning B. 36(2):355-375.
Ferreira LMM, Celaya R, Santos AS, Mayes RW, Rodrigues MAM, Osoro K.  2015.  Application of long-chain alcohols as diet-composition markers in sheep fed on grass-white clover and heather-gorse plant species. Grass and Forage Science. 70:30-43.
Lewandowska D, Zhang R, Colas I, Uzrek N, Waugh R.  2019.  Application of a sensitive and reproducible label-free proteomic approach to explore the proteome of individual meiotic-phase barley anthers. Frontiers in Plant Science. 10:ArticleNo.393.
Shoesmith JR, Solomon CU, Yang X, Wilkinson LG, Sheldrick S, van Eijden E, Couwenberg S, Pugh LM, Eskan M, Stephens J et al..  2021.  APETALA2 functions as a temporal factor together with BLADE-ON-PETIOLE2 and MADS29 to control flower and grain development in barley. Development. 148:ArticleNo.dev194894.
Patil V, McDermott HI, McAllister T, Cummins M, Silva JC, Mollison E, Meikle R, Morris J, Hedley PE, Waugh R et al..  2019.  APETALA2 control of barley internode elongation. Development. 146:ArticleNo.dev170373.
Beattie JH, Gordon MJ, Rucklidge GJ, Reid MD, Duncan GJ, Horgan GW, Cho YE, Kwun IS.  2008.  Aorta protein networks in marginal and acute zinc deficiency. Proteomics. 8:2126-2135. Abstract
Tavares LR, Fortalezas S, Carrilho C, McDougall GJ, Stewart D, Ferreira RB, Santos CN.  2010.  Antioxidant and antiproliferative properties of strawberry tree tissues. Journal of Berry Research. 1:3-12.
Reed MS, Hubacek K, Bonn A, Burt TP, Holden J, Stringer LC, Beharry-Borg N, Buckmaster S, Chapman D, Chapman PJ et al..  2013.  Anticipating and managing future trade-offs and complementarities between ecosystem services. Ecology and Society, 18, 5..
Knapp CW, McCluskey SM, Singh BK, Campbell CD, Hudson G, Graham DW.  2011.  Antibiotic resistance gene abundances correlate with metal and geochemical conditions in archived Scottish soils. PLoS ONE. 6:e27300.
Wright AJ, Soto NA, Baldwin AL, Bateson M, Beale CM, Clark C, Deak T, Edwards EF, Fernandez A, Godinho A et al..  2007.  Anthropogenic noise as a stressor in animals: a multidisciplinary perspective. International Journal of Comparative Psychology. 20:250-273.
Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P et al..  2016.  Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard - a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). Mycokeys. 16:1-15.
Schornack S, Van Damme M, Bozkurt TO, Cano LM, Smoker M, Thines M, Gaulin E, Kamoun S, Huitema E.  2010.  Ancient class of translocated oomycete effectors targets the host nucleus. Proceedings of the National Academy of Sciences, USA. 107:17421-17426.
Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Munoz-Amatriain M, Close TJ, Wise RP, Schulman AH et al..  2013.  Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). Plant Journal. 76:718-727.
Armstrong MR, Whisson SC, Pritchard L, Bos JIB, Venter E, Avrova AO, Rehmany AP, B U, Brooks K, Cherevach I et al..  2005.  An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognised in the host cytoplasm. Proceedings of the National Academy of Sciences, USA. 102:7766-7771. Abstract
De Smet I, White PJ, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F et al..  2012.  Analyzing lateral root development: how to move forward. The Plant Cell. 24:15-20.
De Maayer P, Chan WY, Rubagotti E, Venter SN, Toth IK, Birch PRJ, Coutinho TA.  2014.  Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts. BMC Genomics. 15:404.
Scotti I, Burelli A, Cattonaro F, Chagne D, Fuller J, Hedley PE, Jansson G, Lalanne C, Madur D, Neale D et al..  2005.  Analysis of the distribution of marker classes in a genetic linkage map: A case study in Norway Spruce (Picea.abies Karst). Tree Genetics and Genomes. 1:93-102. Abstract
Furlanetto C, Cardle L, Brown DJF, Jones JT.  2005.  Analysis of Expressed Sequence Tags from the ectoparasitic nematode Xiphinema index. Nematology. 7:95-104. Abstract
Yong SYC, Choong CY, Cheong PL, Pang SL, Amalina RN, Harikrishna JA, Mat-Isa MN, Hedley PE, Milne L, Vaillancourt RE et al..  2011.  Analysis of ESTs generated from inner bark tissue of an Acacia auriculiformis x Acacia mangium hybrid. Tree Genetics and Genomes. 7:143-152.
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Russell JR, Dawson IK, Flavell AJ, Steffenson B, Weltzien E, Booth A, Ceccarelli S, Grando S, Waugh R.  2011.  Analysis of >1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes. New Phytologist. 191:564-578.
Hamilton K, Barfoot J, Crawford KE, Simpson CG, Beaumont PC, Bownes M.  2006.  Amplification of chloroplast DNA using the polymerase chain reaction (PCR): a practical activity for secondary school students. Journal of Biological Education. 40:172-177. Abstract
Wachowiak W, Iason GR, Cavers S.  2013.  Among population differentiation at nuclear genes in native Scots pine (Pinus sylvestris L.) in Scotland. Flora - Morphology, Distribution, Functional Ecology of Plants. 208:79-96.
Trakal L, Michálková Z, Beesley L, Vítková M, Ourednícek P, Barceló AP, Ettler V, Cíhalová S, Komárek M.  2018.  AMOchar: Amorphous manganese oxide coating of biochar improves its efficiency at removing metal(loid)s from aqueous solutions. Science of the Total Environment. 625:71-78.
Dantas LB, Calixto CPG, Dourado MM, Carneiro MS, Brown JWS, Hotta CT.  2019.  Alternative splicing of circadian clock genes correlates with temperature in field-grown sugarcane. Frontiers in Plant Science. 10:ArticleNo.1614..
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol JW et al..  2012.  Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Research. 40:2454-2469.
Humberto A, Wence H, Cameron C, Black HIB, Meier S, Paolini J, Tapia Y, Cornejo P.  2020.  Alteration of enzyme activities and functional diversity of a soil contaminated with copper and arsenic. Ecotoxicology and Environmental Safety. 192:ArticleNo.110264.
Saison C, Degrange V, Oliver R, Millard P, Commeaux C, Montange D, LeRoux X.  2006.  Alteration and resilience of the soil microbial community following compost amendment: effects of compost level and compost-borne microbial community. Environmental Microbiology. 8(2):247-257.
Butterfield BJ, Cavieres LA, Callaway RM, Cook BJ, Kikvidze Z, Lortie CJ, Michalet R, Pugnaire FI, Schoeb C, Xiao S et al..  2013.  Alpine cushion plants inhibit the loss of phylogenetic diversity in severe environments. Ecology Letters. 16:478-486.
Rodriguez-Gutierrez G, Duthie GG, Wood S, Morrice P, Nicol F, Reid M, Cantlay LL, Kelder T, Horgan GW, Fernandez-Bolanos Guzman J et al..  2012.  Alperujo extract, hydroxytyrosol, and 3,4-dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin e-deficient ratsua proteomics and network analysis approach. Molecular Nutrition and Food Research. 56:1131-1147.
Tondelli A, Pagani D, Ghafoori IN, Rahimi M, Ataei R, Rizza F, Flavell AJ, Cattivelli L.  2014.  Allelic variation at Fr-H1/Vrn-H1 and Fr-H2 loci is the main determinant of frost tolerance in spring barley. Environmental and Experimental Botany. 106:148-155.
Schlesinger D, Rikanati RD, Volis S, Faigenboim A, Vendramin V, Cattonaro F, Hooper M, Oren E, Taylor M, Sitrit Y et al..  2019.  Alkaloid chemodiversity in Mandragora spp. is associated with loss-of-functionality of MoH6H, a hyoscyamine 6 beta-hydroxylase gene. Plant Science. 283:301-310.
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Wells ML, Potin P, Craigie JS, Raven JA, Merchant SS, Helliwell KE, Smith AG, Camire ME, Brawley SH.  2017.  Algae as nutritional and functional food sources: revisiting our understanding. Journal of Applied Phycology. 29:949-982.
Jouet A, Saunders DGO, McMullan M, Ward B, Furzer O, Jupe F, Cevik V, Hein I, Thilliez GJA, Holub E et al..  In Press.  Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field. New Phytologist. Published online..
Jouet A, Saunders DGO, McMullan M, Ward B, Furzer O, Jupe F, Cevik V, Hein I, Thilliez GJA, Holub E et al..  2019.  Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field. New Phytologist. 221:1529-1543.
Knierim A, Boenning K, Caggiano M, Cristóvão A, Dirimanova V, Koehnen T, Labarthe P, Prager K.  2015.  The AKIS concept and its relevance in selected EU member states. Outlook on Agriculture.
Chappell A, Scott KP, Griffiths IA, Cowan AA, Hawes C, Wishart J, Martin P.  2017.  The agronomic performance and nutritional content of oat and barley varieties grown in a northern maritime environment depends on variety and growing conditions. Journal of Cereal Science. 74:1-10.
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Andersen MN, Sausse C, Lacroix B, Caul S, Mess A.  2007.  Agricultural studies of GM maize and the field experimental infrastructure of ECOGEN. Pedobiologia. 51:175-184. Abstract
Xiang Q, Zhu D, Giles M, Neilson R, Yang XR, Qiao M, Chen QL.  2020.  Agricultural activities affect the pattern of the resistome within the phyllosphere microbiome in peri-urban environments. Journal of Hazardous Materials. 382:ArticleNo.121068.
Scalco A, Macdiarmid JI, Craig T, Whybrow S, Horgan GW.  2019.  An agent-based model to simulate meat consumption behaviour of consumers in Britain. Journal of Artificial Societies and Social Simulation. 22:ArticleNo.8.
Sanchez-Marono N, Alonso-Betanzos A, Fontenla-Romero O, Brinquis-Nunez C, Polhill JG, Craig T, Dumitru A, Garcia-Mira R.  2015.  An agent-based model for simulating environmental behavior in an educational organization. Neural Processing Letters. 42:89-118.
Russell JR, Kadu CAC, Jamnadass R, Booth A, Cordeiro NJ, Woodhead M, Dawson IK.  2009.  AFLP and SSR diversity in the African fruit tree Allanblackia: implications for management of a genus newly subject to domestication for the edible oil industry. Tree Genetics and Genomes. 5:517-527.
Nicol GW, Campbell CD, Chapman SJ, Prosser JI.  2007.  Afforestation of moorland leads to changes in crenarchaeal community structure. FEMS Microbiology Ecology. 60(1):51-59.
Christensen NM, Oparka KJ, Tilsner J.  2010.  Advances in imaging RNA in plants. Trends in Plant Science. 15:196-203.
Sun XL, Gilroy EM, Chini A, Nurmberg PL, Hein I, Lacomme C, Birch PRJ, Hussain A, Yun BW, Loake GJ.  2011.  ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
Ramezanian A, Dahlin AS, Campbell CD, Hillier S, Mannerstedt-Fogelfors B, Oborn I.  2013.  Addition of a volcanic rockdust to soils has no observable effects on plant yield and nutrient status or on soil microbial activity. Plant and Soil. 367:419-436.
Cammarano D, Payero J, Basso B, Stefanova L, Grace P.  2012.  Adapting wheat sowing dates to projected climate change in the Australian sub-tropics: analysis of crop water use and yield. Crop and Pasture Science.
Carlsson AM, Irvine RJ, Wilson K, Coulson SJ.  2013.  Adaptations to the Arctic: low-temperature development and cold tolerance in the free-living stages of a parasitic nematode from Svalbard. Polar Biology. 36:997-1005.
Ruiz-Ramos M, Ferrise R, Rodriguez A, Lorite IJ, Bindi M, Carter TR, Fronzek S, Palosuo T, Pirttioja N, Baranowski P et al..  2017.  Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. Published online..
Ruiz-Ramos M, Ferrise R, Rodriguez A, Lorite IJ, Bindi M, Carter TR, Fronzek S, Palosuo T, Pirttioja N, Baranowski P et al..  2017.  Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. Published online..
Ruiz-Ramos M, Ferrise R, Rodriguez A, Lorite IJ, Bindi M, Carter TR, Fronzek S, Palosuo T, Pirttioja N, Baranowski P et al..  2018.  Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. 159:260-274.
Ruiz-Ramos M, Ferrise R, Rodriguez A, Lorite IJ, Bindi M, Carter TR, Fronzek S, Palosuo T, Pirttioja N, Baranowski P et al..  2018.  Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. 159:260-274.
Ceola S, Montanari A, Krueger T, Dyer F, Kreibich H, Westerberg I, Carr G, Cudennec C, Elshorbagy A, Savenije H et al..  2016.  Adaptation of water resources systems to changing society and environment: a statement by the International Association of Hydrological Sciences. Hydrological Sciences Journal. 61:2803-2817.
Santos PM, Thornton B, Corsi M.  2012.  Adaptation of the C-4 grass panicum maximum to defoliation is related to plasticity of N uptake, mobilisation and allocation patterns. Scientia Agricola. 69:293-299.
Tingem M, Rivington M, Bellocchi G, Azam-Ali S, Colls J.  2008.  Adaptation assessments for crop production in response to climate change in Cameroon. African Journal of Plant Science and Biotechnology. 2:10-17.
Langkilde S, Schroder M, Stewart D, Meyer O, Conner S, Davies HV, Poulsen M.  2008.  Acute toxicity of high doses of the glycoalkaloids, . Journal of Agricultural and Food Chemistry. 56:8753-8760. Abstract
Palomares-Rius JE, Jones JT, Cock PJ, Castillo P, Blok VC.  2013.  Activation of hatching in diapaused and quiescent Globodera pallida. Parasitology. 140:445-454.
Huang Y, Long X, Chapman SJ, Yao HY.  2015.  Acidophilic denitrifiers dominate the N2O production in a 100-year-old tea orchard soil. Environmental Science and Pollution Research. 22:4173-4182.
Prager K, Creaney R.  2017.  Achieving on-farm practice change through facilitated group learning: evaluating the effectiveness of monitor farms and discussion groups. Journal of Rural Studies. 56:1-11.
Navajas EA, Lambe NR, McLean KA, Glasbey CA, Fisher AV, Charteris AJL, B L, Simm G.  2007.  Accuracy of in vivo muscularity indices measured by computed tomography and their associaton with carcass quality in lambs. Meat Science. 75:533-542. Abstract
Catterall S, Cook AR, Marion G, Butler A, Hulme PE.  2012.  Accounting for uncertainty in colonisation times: a novel approach to modelling the spatio-temporal dynamics of alien invasions using distribution data. Ecography. 35:901-911.
Mayor DJ, Cook K, Thornton B, Walsham P, Witte UFM, Zuur AF, Anderson TR.  2011.  Absorption efficiencies and basal turnover of C, N and fatty acids in a marine Calanoid copepod. Functional Ecology. 25:509-518.
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Koichi K, Mayer R, Kaur K, Cottrell AA, Gordon IJ.  2012.  Aboriginal rangers' perspectives on feral pigs: are they a pest or a resource? A case study in the wet tropics world heritage area of Northern Queensland Journal of Australian Indigenous Issues. 15:2-19.
Kim S-H, Koroleva OA, Lewandowska D, Pendle AF, Clark GP, Simpson CG, Shaw PJ, Brown JWS.  2009.  Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus. Plant Cell. 21:2045-2057.
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Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Hong-Woo C et al..  2013.  The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. Journal of Biomedical Semantics. 4
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Du Z, Chen F, Zhao Z, Liao Q, Palukaitis P, Chen J.  2008.  The 2b protein and the C-terminus of the 2a protein of Cucumber mosaic virus subgroup I strains both play a role in the viral RNA accumulation and induction of symptoms. Virology. 380:363-370. Abstract
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Evans MJ, Batson WG, Gordon IJ, Belton E, Chaseling T, Fletcher D, Harrison M, McElroy T, Mungoven A, Newport J et al..  2021.  The 'Goldilocks Zone' of predation: the level of fox control needed to select predator resistance in a reintroduced mammal in Australia. Biodiversity and Conservation. Published online..

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.