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De Maayer P, Chan WY, Rubagotti E, Venter SN, Toth IK, Birch PRJ, Coutinho TA.  2014.  Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts. BMC Genomics. 15:404.
De Maayer P, Chan WY, Venter SN, Toth IK, Birch PRJ, Joubert F, Coutinho TA.  2010.  Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
De la Fuente Cantó C, Russell J, Hackett CA, Booth A, Dancey S, George TS, Waugh R.  2018.  Genetic dissection of quantitative and qualitative traits using a minimum set of barley recombinant chromosome substitution lines. BMC Plant Biology. 18:ArticleNo.340.
De la Fuente Canto C, Kalogiros DI, Ptashnyk M, George TS, Waugh R, Bengough AG, Russell J, Dupuy LX.  2018.  Morphological and genetic characterisation of the root system architecture of selected barley recombinant chromosome substitution lines using an integrated phenotyping approach. Journal of Theoretical Biology. 447:84-97.
De Garine-Wichatitsky M, Binot A, Ward J, Caron A, Perrotton A, Ross H, Quoc HT, Valis-Fox H, Gordon IJ, Promburom P et al..  2021.  "Health in" and "Health of" social-ecological systems: a practical framework for the management of healthy and resilient agricultural and natural ecosystems. Frontiers in Public Health. 8:ArticleNo.616328.
De Clerck O, Kao SM, Bogaert KA, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J et al..  2018.  Insights into the evolution of multicellularity from the sea lettuce genome. Current Biology. 28:2921-2933.
Day-Stirrat RJ, Milliken KL, Dutton SP, Loucks RG, Hillier S, Aplin AC, Schleicher AM.  2011.  Discussion in response to Knut Bjorlykke regarding JMPG_1376 "Open-System Chemical Behavior In Deep Wilcox Group Mudstones, Texas Gulf Coast, USA". Marine and Petroleum Geology. 28:1383-1384.
Day-Stirrat RJ, Milliken KL, Dutton SP, Loucks RG, Hillier S, Aplin AC, Schleicher AM.  2010.  Open-system chemical behavior in deep Wilcox Group mudstones, Texas Gulf. Marine and Petroleum Geology.. 27(9):1804-1818.
Day-Stirrat RJ, Dutton S, Milliken KL, Loucks RG, Aplin AC, Hillier S, van der Pluijm BA.  2010.  Fabric anisotropy induced by primary depositional variations in the silt: clay ratio in two fine-grained slope fan complexes: Texas Gulf Coast and Northern North Sea. Sedimentary Geology. 226(1-4):42-53.
Day-Stirrat RJ, Hillier S, Nikitin A, Hofmann R, Mahood R, Mertens G.  2021.  Natural gamma-ray spectroscopy (NGS) as a proxy for the distribution of clay minerals and bitumen in the Cretaceous McMurray Formation, Alberta, Canada. Fuel. 288:ArticleNo.119513.
Dawson JJC, Campbell CD, Towers W, Cameron CM, Paton GI.  2006.  Linking biosensor responses to Cd, Cu and Zn partitioning in soils. Environmental Pollution. 142(3):493-500.
Dawson IK, Guariguata MR, Loo J, Weber JC, Lengkeek A, Bush D, Cornelius J, Guarino L, Kindt R, Orwa C et al..  2013.  What is the relevance of smallholders' agroforestry systems for conserving tropical tree species and genetic diversity in circa situm, in situ and ex situ settings? A review Biodiversity and Conservation. 22:301-324.
Dawson JJC, Soulsby C, Tetzlaff D, Hrachowitz M, Dunn SM, Malcolm IA.  2008.  Influence of hydrology and seasonality on long-term DOC exports from three contrasting upland catchments. Biogeochemistry. 90(1):93-113.
Dawson JJC, Tetzlaff D, Speed M, Hrachowitz M, Soulsby C.  2011.  Seasonal controls on DOC dynamics in nested upland catchments in NE Scotland. Hydrological Processes. 25:1647-1658.
Dawson IK, van Breugel P, Coe R, Kindt R, van Zonneveld M, Lilleso JPB, Graudal L, Muchugi A, Russell J, Jamnadass R.  2017.  A meta-analysis of molecular marker genetic datasets for eastern Africa trees supports the utility of potential natural vegetation maps for planning climate-smart restoration initiatives. Tree Genetics and Genomes. 13:ArticleNo.71.
Dawson IK, Hedley PE, Guarino L, Jaenicke H.  2009.  Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.
Dawson IK, Vinceti B, Weber JC, Neufeldt H, Russell JR, Lengkeek AG, Kalinganire A, Kindt R, Lilles JPB, Roshetko J et al..  2011.  Climate change and tree genetic resource management: maintaining and enhancing the productivity and value of smallholder tropical agroforestry landscapes (Review). Agroforestry Systems. 81:67-78.
Dawson LA, Hillier S.  2010.  Measurement of soil characteristics for forensic applications. Surface and Interface Analysis. 42(5):363-377.
Dawson JJC, Adhikari YR, Soulsby C, Stutter MI.  2012.  The biogeochemical reactivity of suspended particulate matter at nested sites in the Dee basin, NE Scotland. Science of the Total Environment. 434:159-170.
Dawson JJC, Smith P.  2010.  Integrative management to mitigate diffuse pollution in multi-functional landscapes. Current Opinions in Environmental Sustainability. 2(5-6):375-382.
Dawson IK, Russell J, Powell W, Steffenson B, Thomas WTB, Waugh R.  2015.  Barley: a translational model for adaptation to climate change. New Phytologist. 206:913-931.
Davison J, Opik M, Daniell TJ, Moora M, Zobel M.  2011.  Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages. FEMS Microbiology Ecology. 78:103-115.
Davis NA, Polhill JG, Aitkenhead MA.  2021.  Measuring heterogeneity in soil networks: a network analysis and simulation-based approach. Ecological Modelling. 439:ArticleNo.109308.
Davis JL, Armengaud P, Larson TR, Graham IA, White PJ, Newton AC, Amtmann A.  2018.  Contrasting nutrient-disease relationships: Potassium gradients in barley leaves have opposite effects on two fungal pathogens with different sensitivities to jasmonic acid. Plant Cell and Environment. 41:2357-2372.
Davis N, Jarvis A, Aitkenhead MJ, Polhill JG.  2020.  Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.
Davies AL.  2012.  Palaeo-environments and human experience. Archaeological Dialogues. 19:51-54.
Davies HV.  2010.  The role of 'omics' technologies in food safety assessment. Food Control. 21:1601-1610.
Davies HV, Bryan GJ, Taylor MA.  2008.  Advances in functional genomics and genetic modification of potato (Review). Potato Research. 51:283-299. Abstract
Davies AL, Bryce R, Redpath SM.  2013.  Use of multicriteria decision analysis to address conservation conflicts. Conservation Biology. 27:936-944.
Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al..  2005.  Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
Davies HV, Shepherd LVT, Stewart D, Frank T, R R, Engel K-H.  2010.  Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.
Davies C, Ellis CJ, Iason GR, Ennos RA.  2014.  Genotypic variation in a foundation tree (Populus tremula L.) explains community structure of associated epiphytes. Biology Letters. 10:ArticleNo.20140190.
Davies HV.  2005.  GM organisms and the EU regulatory environment.. Proceedings of the Nutrition Society. 64:481-486.
Davies BB, Hodge ID.  2007.  Exploring environmental perspectives in arable agriculture: a Q methodology study in East Anglia, UK. Ecological Economics. 61(2-3):323-333.
Davies AL, White RM.  2012.  Collaboration in natural resource governance: Reconciling stakeholder expectations in deer management in Scotland. Journal of Environmental Management.. 112:160-169.
Davidson RS, Marion G, Hutchings MR.  2008.  Effects of host social hierarchy on disease persistence. Journal of Theoretical Biology. 253:424-433. Abstract
Davidson RS, Marion G, White PCL, Hutchings MR.  2009.  Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al..  2007.  Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.
Das Dangol S, Barakate A, Stephens J, Caliskan ME, Bakhsh A.  2019.  Genome editing of potato using CRISPR technologies: current development and future prospective. Plant Cell, Tissue and Organ Culture. 139:403-416.
Darrier B, Russel J, Milner SG, Hedley PE, Shaw PD, Macaulay M, Ramsay LD, Halpin C, Mascher M, Fleury DL et al..  2019.  A comparison of mainstream genotyping platforms for the evaluation and use of barley genetic resources. Frontiers in Plant Science. 10:ArticleNo.544.
Darch T, Giles CD, Blackwell MSA, George TS, Brown LK, Menezes-Blackburn D, Shand CA, Stutter MI, Lumsdon DG, Mezeli MM et al..  2018.  Inter- and intra-species intercropping of barley cultivars and legume species as affected by soil phosphorus availability. Plant and Soil. 427:125-138.
Dantas LB, Calixto CPG, Dourado MM, Carneiro MS, Brown JWS, Hotta CT.  2019.  Alternative splicing of circadian clock genes correlates with temperature in field-grown sugarcane. Frontiers in Plant Science. 10:ArticleNo.1614..
Danies G, Myers K, Mideros MF, Restrepo S, Martin FN, Cooke DEL, Smart CD, Ristaino JB, Seaman AJ, Gugino BK et al..  2014.  An ephemeral sexual population of Phytophthora infestans in the Northeastern United States and Canada. PLoS ONE. 9:e116354.
Daniell TJ, Davidson J, Alexander CJ, Caul S, Roberts D.  2012.  Improved real-time PCR estimation of gene copy number in soil extracts using an artificial reference. Journal of Microbiological Methods. 91:38-44.
Dandy N, Fiorini S, Davies AL.  2014.  Agenda-setting and power in collaborative natural resource management. Environmental Conservation. 41:311-320.
Danchin EGJ, Guzeeva E, Mantelin S, Berekpiki A, Jones JT.  2016.  Horizontal gene transfer from bacteria has enabled the plant-parasitic nematode Globodera pallida to feed on plant-derived sucrose. Molecular Biology and Evolution. 33:1571-1579.
Danchin EGJ, Perfus-Barbeoch L, Rancurel C, Thorpe P, Da Rocha M, Bajew S, Neilson R, Sokolova E, Dasilva C, Guy J et al..  2017.  The transcriptomes of xiphinema index and longidorus elongatus suggest independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes. Genes. 8:ArticleNo.287.
Daly P, McClellan C, Maluk M, Oakey H, Lapierre C, Waugh R, Stephens J, Marshall D, Barakate A, Tsuji Y et al..  2019.  RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family. Plant Biotechnology Journal.. 17:594-607.
Dallimer M, Tinch D, Hanley N, Irvine KN, Rourquette JR, Warren PH, Maltby L, Gaston KJ, Armsworth PR.  2014.  Quantifying preferences for the natural world using monetary and non-monetary assessments of value. Conservation Biology. 28:404-413.
Dallimer M, Davies ZG, Diaz-Porras DF, Irvine KN, Maltby L, Warren PH, Armsworth PR, Gaston KJ.  2015.  Historical influences on the current provision of multiple ecosystem services. Global Environmental Change - Human and Policy Dimensions. 31:307-317.
Dallimer M, Davies ZG, Irvine KN, Maltby L, Warren PH, Gaston KJ, Armsworth PR.  2014.  What personal and environmental factors determine frequency of urban greenspace use? International Journal of Environmental Research and Public Health. 11:7977-7992.
Dai F, Nevo E, Wu DZ, Comadran J, Zhou MX, Qiu L, Chen ZH, Beiles A, Chen GX, Zhang GP.  2012.  Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:16969-16973.
Dahlin AS, Ramezanian A, Campbell CD, Hillier S, Oborn I.  2015.  Waste recovered by-products can increase growth of grass-clover mixtures in low fertility soils and alter botanical and mineral nutrient composition. Annals of Applied Biology. 166:105-117.
Dahlin AS, Eriksson J, Campbell CD, Oborn I.  2016.  Soil amendment affects Cd uptake by wheat - are we underestimating the risks from chloride inputs? Science of the Total Environment. 554:349-357.
Dahlin AS, Edwards AC, Lindstrom BEM, Ramezanian A, Shand CA, Walker RL, Watson CA, Oborn I.  2012.  Revisiting herbage sample collection and preparation procedures to minimise risks of trace element contamination. European Journal of Agronomy. 43:33-39.
Dahlawi H, Jordan-Mahy N, Clench M, McDougall GJ, Le Maitre CL.  2013.  Polyphenols are responsible for the pro-apoptotic properties of pemegranate juice on leukemia cell lines. Food Science & Nutrition. 1:196-208.
Dagleish MP, Finlayson J, Bayne C, MacDonald S, Sales J, Hodgson JC.  2010.  Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.
Dagleish MP, Bayne CW, Moon GG, Finlayson J, Sales J, Williams J, Hodgson JC.  2016.  Differences in virulence between bovine-derived clinical isolates of pasteurella multocida serotype A from the UK and the USA in a model of bovine pneumonic pasteurellosis. Journal of Comparative Pathology. 155:62-71.
Dagleish MP, Hamilton S, Gonz L, Eaton SL, Steele PJ, Finlayson J, Sis S, Pang YP, Sales J, Chianini F et al..  2010.  Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.