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Dagleish MP, Finlayson J, Bayne C, MacDonald S, Sales J, Hodgson JC. 2010. Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.

Dagleish MP, Bayne CW, Moon GG, Finlayson J, Sales J, Williams J, Hodgson JC. 2016. Differences in virulence between bovine-derived clinical isolates of pasteurella multocida serotype A from the UK and the USA in a model of bovine pneumonic pasteurellosis. Journal of Comparative Pathology. 155:62-71.

Dagleish MP, Hamilton S, Gonz L, Eaton SL, Steele PJ, Finlayson J, Sis S, Pang YP, Sales J, Chianini F et al.. 2010. Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.

Dahlawi H, Jordan-Mahy N, Clench M, McDougall GJ, Le Maitre CL. 2013. Polyphenols are responsible for the pro-apoptotic properties of pemegranate juice on leukemia cell lines. Food Science & Nutrition. 1:196-208.

Dahlin AS, Ramezanian A, Campbell CD, Hillier S, Oborn I. 2015. Waste recovered by-products can increase growth of grass-clover mixtures in low fertility soils and alter botanical and mineral nutrient composition. Annals of Applied Biology. 166:105-117.

Dahlin AS, Eriksson J, Campbell CD, Oborn I. 2016. Soil amendment affects Cd uptake by wheat - are we underestimating the risks from chloride inputs? Science of the Total Environment. 554:349-357.

Dahlin AS, Edwards AC, Lindstrom BEM, Ramezanian A, Shand CA, Walker RL, Watson CA, Oborn I. 2012. Revisiting herbage sample collection and preparation procedures to minimise risks of trace element contamination. European Journal of Agronomy. 43:33-39.

Dai F, Nevo E, Wu DZ, Comadran J, Zhou MX, Qiu L, Chen ZH, Beiles A, Chen GX, Zhang GP. 2012. Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:16969-16973.

Dallimer M, Tinch D, Hanley N, Irvine KN, Rourquette JR, Warren PH, Maltby L, Gaston KJ, Armsworth PR. 2014. Quantifying preferences for the natural world using monetary and non-monetary assessments of value. Conservation Biology. 28:404-413.

Dallimer M, Davies ZG, Diaz-Porras DF, Irvine KN, Maltby L, Warren PH, Armsworth PR, Gaston KJ. 2015. Historical influences on the current provision of multiple ecosystem services. Global Environmental Change - Human and Policy Dimensions. 31:307-317.

Dallimer M, Davies ZG, Irvine KN, Maltby L, Warren PH, Gaston KJ, Armsworth PR. 2014. What personal and environmental factors determine frequency of urban greenspace use? International Journal of Environmental Research and Public Health. 11:7977-7992.

Daly P, McClellan C, Maluk M, Oakey H, Lapierre C, Waugh R, Stephens J, Marshall D, Barakate A, Tsuji Y et al.. 2019. RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family. Plant Biotechnology Journal.. 17:594-607.

Danchin EGJ, Guzeeva E, Mantelin S, Berekpiki A, Jones JT. 2016. Horizontal gene transfer from bacteria has enabled the plant-parasitic nematode Globodera pallida to feed on plant-derived sucrose. Molecular Biology and Evolution. 33:1571-1579.

Danchin EGJ, Perfus-Barbeoch L, Rancurel C, Thorpe P, Da Rocha M, Bajew S, Neilson R, Sokolova E, Dasilva C, Guy J et al.. 2017. The transcriptomes of xiphinema index and longidorus elongatus suggest independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes. Genes. 8:ArticleNo.287.

Dandy N, Fiorini S, Davies AL. 2014. Agenda-setting and power in collaborative natural resource management. Environmental Conservation. 41:311-320.

Daniell TJ, Davidson J, Alexander CJ, Caul S, Roberts D. 2012. Improved real-time PCR estimation of gene copy number in soil extracts using an artificial reference. Journal of Microbiological Methods. 91:38-44.

Danies G, Myers K, Mideros MF, Restrepo S, Martin FN, Cooke DEL, Smart CD, Ristaino JB, Seaman AJ, Gugino BK et al.. 2014. An ephemeral sexual population of Phytophthora infestans in the Northeastern United States and Canada. PLoS ONE. 9:e116354.

Dantas LB, Calixto CPG, Dourado MM, Carneiro MS, Brown JWS, Hotta CT. 2019. Alternative splicing of circadian clock genes correlates with temperature in field-grown sugarcane. Frontiers in Plant Science. 10:ArticleNo.1614..

Darch T, Giles CD, Blackwell MSA, George TS, Brown LK, Menezes-Blackburn D, Shand CA, Stutter MI, Lumsdon DG, Mezeli MM et al.. 2018. Inter- and intra-species intercropping of barley cultivars and legume species as affected by soil phosphorus availability. Plant and Soil. 427:125-138.

Darrier B, Russel J, Milner SG, Hedley PE, Shaw PD, Macaulay M, Ramsay LD, Halpin C, Mascher M, Fleury DL et al.. 2019. A comparison of mainstream genotyping platforms for the evaluation and use of barley genetic resources. Frontiers in Plant Science. 10:ArticleNo.544.

Das Dangol S, Barakate A, Stephens J, Caliskan ME, Bakhsh A. 2019. Genome editing of potato using CRISPR technologies: current development and future prospective. Plant Cell, Tissue and Organ Culture. 139:403-416.

Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al.. 2007. Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.

Davidson RS, Marion G, Hutchings MR. 2008. Effects of host social hierarchy on disease persistence. Journal of Theoretical Biology. 253:424-433. Abstract

Davidson RS, Marion G, White PCL, Hutchings MR. 2009. Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.

Davies AL, White RM. 2012. Collaboration in natural resource governance: Reconciling stakeholder expectations in deer management in Scotland. Journal of Environmental Management.. 112:160-169.

Davies AL. 2011. Long-term approaches to native woodland restoration: Palaeoecological and stakeholder perspectives on Atlantic forests of Northern Europe. Forest Ecology and Management. 261:751-763.

Davies HV. 2010. The role of 'omics' technologies in food safety assessment. Food Control. 21:1601-1610.

Davies AL. 2012. Palaeo-environments and human experience. Archaeological Dialogues. 19:51-54.

Davies BB, Hodge ID. 2006. Farmers' preferences for new environmental policy instruments: determining the acceptability of cross compliance for biodiversity benefits. Journal of Agricultural Economics. 57(3):393-414.

Davies HV, Bryan GJ, Taylor MA. 2008. Advances in functional genomics and genetic modification of potato (Review). Potato Research. 51:283-299. Abstract

Davies AL, Bryce R, Redpath SM. 2013. Use of multicriteria decision analysis to address conservation conflicts. Conservation Biology. 27:936-944.

Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al.. 2005. Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract

Davies HV, Shepherd LVT, Stewart D, Frank T, R R, Engel K-H. 2010. Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.

Davies C, Ellis CJ, Iason GR, Ennos RA. 2014. Genotypic variation in a foundation tree (Populus tremula L.) explains community structure of associated epiphytes. Biology Letters. 10:ArticleNo.20140190.

Davies HV. 2005. GM organisms and the EU regulatory environment.. Proceedings of the Nutrition Society. 64:481-486.

Davies BB, Hodge ID. 2007. Exploring environmental perspectives in arable agriculture: a Q methodology study in East Anglia, UK. Ecological Economics. 61(2-3):323-333.

Davis N, Jarvis A, Aitkenhead MJ, Polhill JG. 2020. Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.

Davis NA, Polhill JG, Aitkenhead MA. 2021. Measuring heterogeneity in soil networks: a network analysis and simulation-based approach. Ecological Modelling. 439:ArticleNo.109308.

Davis JL, Armengaud P, Larson TR, Graham IA, White PJ, Newton AC, Amtmann A. 2018. Contrasting nutrient-disease relationships: Potassium gradients in barley leaves have opposite effects on two fungal pathogens with different sensitivities to jasmonic acid. Plant Cell and Environment. 41:2357-2372.

Davison J, Opik M, Daniell TJ, Moora M, Zobel M. 2011. Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages. FEMS Microbiology Ecology. 78:103-115.

Dawson IK, Russell J, Powell W, Steffenson B, Thomas WTB, Waugh R. 2015. Barley: a translational model for adaptation to climate change. New Phytologist. 206:913-931.

Dawson JJC, Campbell CD, Towers W, Cameron CM, Paton GI. 2006. Linking biosensor responses to Cd, Cu and Zn partitioning in soils. Environmental Pollution. 142(3):493-500.

Dawson IK, Guariguata MR, Loo J, Weber JC, Lengkeek A, Bush D, Cornelius J, Guarino L, Kindt R, Orwa C et al.. 2013. What is the relevance of smallholders' agroforestry systems for conserving tropical tree species and genetic diversity in circa situm, in situ and ex situ settings? A review Biodiversity and Conservation. 22:301-324.

Dawson JJC, Soulsby C, Tetzlaff D, Hrachowitz M, Dunn SM, Malcolm IA. 2008. Influence of hydrology and seasonality on long-term DOC exports from three contrasting upland catchments. Biogeochemistry. 90(1):93-113.

Dawson IK, Hedley PE, Guarino L, Jaenicke H. 2009. Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.

Dawson JJC, Tetzlaff D, Speed M, Hrachowitz M, Soulsby C. 2011. Seasonal controls on DOC dynamics in nested upland catchments in NE Scotland. Hydrological Processes. 25:1647-1658.

Dawson IK, van Breugel P, Coe R, Kindt R, van Zonneveld M, Lilleso JPB, Graudal L, Muchugi A, Russell J, Jamnadass R. 2017. A meta-analysis of molecular marker genetic datasets for eastern Africa trees supports the utility of potential natural vegetation maps for planning climate-smart restoration initiatives. Tree Genetics and Genomes. 13:ArticleNo.71.

Dawson LA, Hillier S. 2010. Measurement of soil characteristics for forensic applications. Surface and Interface Analysis. 42(5):363-377.

Dawson IK, Vinceti B, Weber JC, Neufeldt H, Russell JR, Lengkeek AG, Kalinganire A, Kindt R, Lilles JPB, Roshetko J et al.. 2011. Climate change and tree genetic resource management: maintaining and enhancing the productivity and value of smallholder tropical agroforestry landscapes (Review). Agroforestry Systems. 81:67-78.

Dawson JJC, Adhikari YR, Soulsby C, Stutter MI. 2012. The biogeochemical reactivity of suspended particulate matter at nested sites in the Dee basin, NE Scotland. Science of the Total Environment. 434:159-170.

Dawson JJC, Smith P. 2010. Integrative management to mitigate diffuse pollution in multi-functional landscapes. Current Opinions in Environmental Sustainability. 2(5-6):375-382.

Day-Stirrat RJ, Hillier S, Nikitin A, Hofmann R, Mahood R, Mertens G. 2021. Natural gamma-ray spectroscopy (NGS) as a proxy for the distribution of clay minerals and bitumen in the Cretaceous McMurray Formation, Alberta, Canada. Fuel. 288:ArticleNo.119513.

Day-Stirrat RJ, Loucks RG, Milliken KL, Hillier S, van der Pluijm BA. 2008. Phyllosilicate orientation demonstrates early timing of compactional stabilization in calcite-cemented concretions in the Barnett Shale (Late Mississippian), Fort Worth Basin, Texas (U.S.A). Sedimentary Geology. 208(1-2):27-35.

Day-Stirrat RJ, Milliken KL, Dutton SP, Loucks RG, Hillier S, Aplin AC, Schleicher AM. 2010. Open-system chemical behavior in deep Wilcox Group mudstones, Texas Gulf. Marine and Petroleum Geology.. 27(9):1804-1818.

Day-Stirrat RJ, Milliken KL, Dutton SP, Loucks RG, Hillier S, Aplin AC, Schleicher AM. 2011. Discussion in response to Knut Bjorlykke regarding JMPG_1376 "Open-System Chemical Behavior In Deep Wilcox Group Mudstones, Texas Gulf Coast, USA". Marine and Petroleum Geology. 28:1383-1384.

Day-Stirrat RJ, Dutton S, Milliken KL, Loucks RG, Aplin AC, Hillier S, van der Pluijm BA. 2010. Fabric anisotropy induced by primary depositional variations in the silt: clay ratio in two fine-grained slope fan complexes: Texas Gulf Coast and Northern North Sea. Sedimentary Geology. 226(1-4):42-53.

De Clerck O, Kao SM, Bogaert KA, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J et al.. 2018. Insights into the evolution of multicellularity from the sea lettuce genome. Current Biology. 28:2921-2933.

De Garine-Wichatitsky M, Binot A, Ward J, Caron A, Perrotton A, Ross H, Quoc HT, Valis-Fox H, Gordon IJ, Promburom P et al.. 2021. "Health in" and "Health of" social-ecological systems: a practical framework for the management of healthy and resilient agricultural and natural ecosystems. Frontiers in Public Health. 8:ArticleNo.616328.

De la Fuente Cantó C, Russell J, Hackett CA, Booth A, Dancey S, George TS, Waugh R. 2018. Genetic dissection of quantitative and qualitative traits using a minimum set of barley recombinant chromosome substitution lines. BMC Plant Biology. 18:ArticleNo.340.

De la Fuente Canto C, Kalogiros DI, Ptashnyk M, George TS, Waugh R, Bengough AG, Russell J, Dupuy LX. 2018. Morphological and genetic characterisation of the root system architecture of selected barley recombinant chromosome substitution lines using an integrated phenotyping approach. Journal of Theoretical Biology. 447:84-97.

De Maayer P, Chan WY, Rubagotti E, Venter SN, Toth IK, Birch PRJ, Coutinho TA. 2014. Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts. BMC Genomics. 15:404.

De Maayer P, Chan WY, Venter SN, Toth IK, Birch PRJ, Joubert F, Coutinho TA. 2010. Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.

De Meyer SE, Andrews M, James EK, Willems A. 2019. Mesorhizobium carmichaelinearum sp. nov., isolated from Carmichaelineae spp. root nodules. International Journal of Systematic and Evolutionary Microbiology. 69:146-152.

De Santis C, Martin SAM, Dehler CE, Iannetta PPM, Leeming D, Tocher DR. 2016. Influence of dietary inclusion of a wet processed faba bean protein isolate on post-smolt Atlantic salmon (Salmo salar). Aquaculture. 465:124-133.

De Smet I, White PJ, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F et al.. 2012. Analyzing lateral root development: how to move forward. The Plant Cell. 24:15-20.

De Souza EA, Ferreira-Eloy NR, Grassmann CD, Rosolem CA, White PJ. 2019. Ammonium improves corn phosphorus acquisition through changes in the rhizosphere process and root morphology. Pedosphere. 29:534-539.

Debeljak M, Squire GR, Kocev D, Hawes C, Young MW, Dzeroski S. 2011. Analysis of time series data on agroecosystem vegetation using predictive clustering trees. Ecological Modelling. 222:2524-2529.

Debeljak M, Squire GR, Demsar D, Young MW, Dzeroski S. 2008. Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract

Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD. 2009. Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.

Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD. 2008. Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25(1):66-77.

Deeks MJ, Calcutt JR, Ingle EKS, Hawkins TJ, Chapman SN, Richardson AC, Mentlak DA, Dixon MR, Cartwright F, Smertenko AP et al.. 2012. A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Current Biology. 22:1595-1600.

Deeks LK, Bengough AG, Stutter MI, Young IM, Zhang XX. 2008. Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348(3-4):431-441.

Deeks LK, Bengough AG, Stutter MI, Young IM, Zhang X. 2008. Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348:431-441. Abstract

Deffuant G, Alvarez I, Barreteau O, de Vries B, Edmonds B, Gilbert N, Gotts N, Jabot F, Janssen S, Hilden M et al.. 2012. Data and models for exploring sustainability of human well-being in global environmental change. European Physical Journal Special Topics.. 214:519-545.

Deflorio G, Horgan GW, Jaspars M, Woodward S. 2012. Defence response of Sitka spruce before and after inoculation with Heterobasidion annosum: 1H NMR fingerprinting of bark and sapwood metabolites. Analytical and Bioanalytical Chemistry. 402:3333-3344.

DeGabriel JL, Moore BD, Marsh KJ, Foley WJ. 2010. The effect of plant secondary metabolites on the interplay between the internal and external environments of marsupial folivores. Chemoecology. 20(2):97-108.

DeGabriel JL, Moore BD, Shipley LA, Krockenberger AK, Wallis IR, Johnson CN, Foley WJ. 2009. Inter-population differences in the tolerance of a marsupial folivore to plant secondary metabolites. Oecologia.. 161(3):539-548.

DeGabriel JL, Moore BD, Foley WJ, Johnson CN. 2009. The effects of plant defensive chemistry on nutrient availability determine reproductive success in a mammal. Ecology. 90(3):711-719.

DeGabriel JL, Wallis IR, Moore BD, Foley WJ. 2008. A simple integrative assay to quantify nutritional quality for browsing herbivores. Oecologia. 156(1):107-116.

DeGabriel JL, Albon SD, Fielding DA, Riach DJ, Westaway S, Irvine RJ. 2011. The presence of sheep leads to increases in plant diversity and reductions in the impact of deer on heather. Journal of Applied Ecology. 48:1269-1277.

Dekker LW, Hallett PD, Lichner L, Novak V, Sir M. 2006. Introduction to biohydrology. BiologiaBiohydrology, Special Issue, Biologia 61/Supplement 19. 61, Suppl 19:223-224. Abstract

Del Cortona A, Jackson CJ, Bucchini F, Van Bel M, D'Hondt S, Skaloud P, Delwiche CF, Knoll AH, Raven JA, Verbruggen H et al.. 2020. Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proceedings of the National Academy of Sciences of the United States of America. 117:2551-2559.

Delgado-Baquerizo M, Maestre FT, Reich PB, Jeffries TC, Gaitán JJ, Encinar D, Berdugo M, Campbell CD, Singh BK. 2016. Microbial diversity drives multifunctionality in terrestrial ecosystems. Nature Communications. 7

Delgado-Baquerizo M, Reich PB, Khachane AN, Campbell CD, Thomas N, Freitag TE, Al-Soud WA, Sorensen SJ, Bardgett RD, Singh BK. 2017. It is elemental: soil nutrient stoichiometry drives bacterial diversity. Environmental Microbiology. 19:1176-1188.

Delgado-Baquerizo M, Giaramida L, Reich PB, Khachane AN, Hamonts K, Edwards C, Lawton LA, Singh BK. 2016. Lack of functional redundancy in the relationship between microbial diversity and ecosystem functioning. Journal of Ecology. 104:936-946.

Dello Jacovo E, Valentine TA, Maluk M, Toorop P, Lopez del Egido L, Frachon N, Kenicer G, Park L, Goff M, Ferro VA et al.. 2019. Towards a characterisation of the wild legume bitter vetch (Lathyrus linifolius L. (Reichard) Bässler): heteromorphic seed germination, root nodule structure and N-fixing rhizobial symbionts. Plant Biology.. 2:523-532.

Demaneche S, Schauser L, Dawson LA, Franqueville L, Simonet P. 2017. Microbial soil community analyses for forensic science: application to a blind test. Forensic Science International. 270:153-158.

Demars BOL, Wiegleb G, Harper DM, Broring U, Brux H, Herr W. 2014. Aquatic plant dynamics in lowland river networks: connectivity, management and climate change. Water. 6:868-911.

Demars BOL. 2008. Whole stream phosphorus cycling: testing methods to assess the effect of saturation of sorption capacity on nutrient uptake length measurements. Water Research. 42(10-11):2507-2516.

Demars BOL, Gislason GM, Olafsson JS, Manson JR, Friberg N, Hood JM, Thompson JJD, Freitag TE. 2016. Impact of warming on CO2 emissions from streams countered by aquatic photosynthesis. Nature Geoscience. 9:758-761.

Demars BOL, Potts J, Tremolieres M, Thiebaut G, Gougelin N, Nordmann V. 2012. River macrophyte indices: not the Holy Grail!. Freshwater Biology. 57:1745-1759.

Demars BOL, Manson JR, Olafsson JS, Gislason GM, Gudmundsdottir R, Woodward G, Reiss J, Pichler D, Rasmussen JJ, Friberg N. 2011. Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.

Demars BOL, Edwards AC. 2007. Tissue nutrient concentrations in freshwater aquatic macrophytes: high inter-taxon differences and low phenotypic response to nutrient supply. Freshwater Biology. 52(22):2073-2086.

Demars BOL, Kemp JL, Friberg N, Usseglio-Polatera P, Harper DM. 2012. Macroinvertebrate abundance and proportion of trait categories in river biotopes across England and Wales. PANGEAE database Supplement to: Demars, B.O.L.; Kemp, J.L.; Friberg, N.; Usseglio-Polatera, P.; Harper, D.M. (2012): Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators.. 23:301-311.

Demars BOL, Kemp JL, Marteau B, Friberg N, Thornton B. 2021. Stream macroinvertebrates and carbon cycling in tangled food webs. Ecosystems. Published online..

Demars BOL, Manson JR, Olafsson JS, Gislason GM, Friberg N. 2011. Stream hydraulics and temperature determine the metabolism of geothermal Icelandic streams. Knowledge Management of Aquatic Ecosystem. 402:17pp.

Demars BOL, Edwards AC. 2007. A seasonal survey of surface water habitats within the River Spey basin, Scotland: major nutrient properties. Aquatic Conservation: Marine and Freshwater Ecosystems. 17(6):565-583.

Demars BOL, Tremolieres M. 2009. Aquatic macrophytes as bioindicators of carbon dioxide in groundwater fed rivers. The Science of the Total Environment. 407(16):4752-4763.

Demars BOL, Manson JR. 2013. Temperature dependence of stream aeration coefficients and the effect of water turbulence: a critical review. Water Research. 47:1-15.

Demars BOL, Kemp JL, Friberg N, Usseglio-Polatera P, Harper DM. 2012. Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators. 23:301-311.

Demars BOL, Thiebaut G. 2008. Distribution of aquatic plants in the Northern Vosges rivers: implications for biomonitoring and conservation. Aquatic Conservation: Freshwater and Marine Ecosystem. 18:619-632.

Demars BOL, Thompson JJD, Manson JR. 2015. Stream metabolism and the open diel oxygen method: principles, practice and perspectives. Limnology and Oceanography: Methods. 13:356-374.

Demars BOL, Edwards AC. 2009. Distribution of aquatic macrophytes in contrasting river systems: a critique of compositional-based assessment of water quality. The Science of the Total Environment. 407(2):975-990.

Demars BOL. 2019. Hydrological pulses and burning of dissolved organic carbon by stream respiration. Limnology and Oceanography. 64:406-421.

Demars BOL. 2013. Uncertainties in biotic indicators and a corrigendum to Ponader et al. (2007): Implications for biomonitoring. Ecological Indicators..

Demars BOL, Edwards AC. 2008. Tissue nutrient concentrations in aquatic macrophytes: comparison across biophysical zones, surface water habitats and plant life forms. Chemistry and Ecology. 24(6):413-422.

van Den Akker SE, Lilley CJ, Jones JT, Urwin PE. 2014. Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes. PLoS Pathogens. 10:ArticleNo.e1004391.

Deng W, Jeng DS, Toorop PE, Squire GR, Iannetta PPM. 2012. A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris L. Medic (shepherd's purse). Annals of Botany. 109:419-427.

Deng WN, Iannetta PPM, Hallett PD, Toorop PE, Squire GR, Jeng DS. 2013. The rheological properties of the seed coat mucilage of Capsella bursa-pastoris L. Medik. (shepherd's purse). Biorheology. 50:57-67.

Deng WN, Hallett PD, Jeng DS, Squire GR, Toorop PE, Iannetta PPM. 2015. The effect of natural seed coatings of Capsella bursa-pastoris L. Medik. (shepherd's purse) on soil-water retention, stability and hydraulic conductivity. Plant and Soil. 387:167-176.

Deng H, Zhang B, Yin R, Wang HL, Mitchell SM, Griffiths BS, Daniell TJ. 2010. Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.

Deng H, Ma L, Bandaranayaka N, Qin ZW, Mann G, Kyeremeh K, Yu Y, Shepherd T, Naismith JH, O'Hagan D. 2014. Identification of fluorinases from Streptomyces sp MA37, Norcardia brasiliensis, and Actinoplanes sp N902-109 by genome mining. ChemBioChem. 15:364-368.

Dengler J, Wagner V, Dembicz I, García-Mijangos I, Naqinezhad A, Boch S, Chiarucci A, Conradi T, Filibeck G, Guarino R et al.. 2018. GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia. 48:331-347.

Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ. 2009. Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.

Dennis PG, Sparrow AD, Gregorich EG, Novis P, Elberling B, Greenfield LG, Hopkins DW. 2013. Microbial responses to carbon and nitrogen supplementation in an Antarctic dry valley soil. Soil Biology and Biochemistry. 25:55-61.

Dennis P, Skartveit J, McCracken DI, Pakeman RJ, Beaton K, Kunaver A, Evans D. 2008. The effects of livestock grazing on foliar arthropods associated with bird diet in upland grasslands of Scotland. Journal of Applied Ecology. 45:279-287.

Dennis PG, Miller AJ, Clark IM, Taylor RG, Valsami-Jones E, Hirsch PR. 2008. A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract

Dennis PG, Rushton SP, Laudicina VA, Daniell TJ, Ord V, Newsham KK, O'Donnell AG, Hopkins DW. 2012. Soil fungal community composition does not alter along a latitudinal gradient through the maritime and sub-Antarctic. Fungal Ecology. 5:403-408.

Denoys-Rothan B, Chartier P, Petit A, Gordon S, Graham J, Dolan A, Hofer M, Faedi W, Malteni M, Baruzzi G et al.. 2008. Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.

Denwood MJ, Reid SWJ, Love S, Nielsen MK, Matthews L, McKendrick IJ, Innocent GT. 2010. Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.

Denwood MJ, Love S, Innocent GT, Matthews L, McKendrick IJ, Hillary N, Smith A, Reid SWJ. 2012. Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method. Veterinary Parasitology. 188:120-126.

Dessi P, Porca E, Waters NR, Lakaniemi AM, Collins G, Lens PNL. 2018. Thermophilic versus mesophilic dark fermentation in xylose-fed fluidised bed reactors: Biohydrogen production and active microbial community. International Journal of Hydrogen Energy. 43:5473-5485.

Destefanis M, Nagy I, Rigney B, Bryan GJ, McLean K, Hein I, Griffin D, Milbourne D. 2015. A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages. BMC Plant Biology. 15

Deveautour C, Donn S, Power S, Bennett AE, Powell JR. 2018. Experimentally altered rainfall regimes and host root traits affect grassland arbuscular mycorrhizal fungal communities. Molecular Ecology. 27:2152-2163.

Devereux G, McNeill G, Newman G, Turner S, Craig L, Martindale S, Helms P, Seaton A. 2007. Early childhood wheezing symptoms in relation to plasma selenium in pregnant mothers and neonates. Clinical and Experimental Allergy. 37:1000-1008.

Devereux G, Tagiyeva N, Turner S, Ayres JG, Seaton A, Hudson G, Hough RL, Campbell CD, Shand CA. 2014. Early-life residential exposure to soil components in rural areas and childhood respiratory health and allergy. Science of the Total Environment. 466-467:338-344.

Devos Y, Hails RS, Messean A, Perry JN, Squire GR. 2012. Feral genetically modified herbicide tolerant oilseed rape from seed import spills: are concerns scientifically justified? Transgenic Research. 21:1-21.

Dey T, Saville A, Myers K, Tewari S, Cooke DEL, Tripathy S, Fry WE, Ristaino JB, Guha Roy S. 2018. Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India. Scientific Reports. 8:ArticleNo.4429.

Diamanti J, Mazzoni L, Balducci F, Capelletti T, Capocasa F, Battino M, Dobson G, Stewart D, Mezzetti B. 2014. Use of wild genotypes in breeding program increases strawberry fruit sensorial and nutritional quality. Journal of Agricultural and Food Chemistry. 62:3944-3953.

Dick J, Andrews C, Beaumont DA, Benham S, Brooks DR, Corbett S, Lloyd D, McMillan S, Monteith DT, Pilgrim ES et al.. 2011. A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.

Dick MA, Dobbie K, Cooke DEL, Brasier CM. 2006. Phytophthora captiosa sp. nov and Phytophthora fallax sp. nov causing crown dieback of Eucalyptus in New Zealand. Mycological Research. 110:393-404. Abstract

Dicker AJ, Nath M, Yaga R, Nisbet AJ, Lainson FA, Gilleard JS, Skuce PJ. 2011. Teladorsagia circumcincta: The transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro. Experimental Parasitology. 127:351-356.

Dicks LV, Rose DC, Ang F, Aston S, Birch ANE, Boatman N, Bowles EL, Chadwick D, Dinsdale A, Durham S et al.. 2018. What agricultural practices are most likely to deliver ‘sustainable intensification’ in the UK? Food and Energy Security. Published online..

Dicks LV, Rose DC, Ang F, Aston S, Birch ANE, Boatman N, Bowles EL, Chadwick D, Dinsdale A, Durham S et al.. 2019. What agricultural practices are most likely to deliver ‘sustainable intensification’ in the UK? Food and Energy Security. 8:ArticleNo.e00148.

Dietrich C, Miller J, McKenzie G, Palkovics L, Bal E, Palukaitis P, Maiss E. 2007. No recombination detected between potyvirus mixed infections and between potyvirus derived transgenes and heterologous challenging potyviruses. Environmental Biosafety Research. 6:207-218. Abstract

Dietrich RC, Bengough AG, Jones HG, White PJ. 2013. Can root electrical capacitance be used to predict root mass in soil? Annals of Botany. 112:457-464.

Dietrich RC, Bengough AG, Jones HG, White PJ. 2012. A new physical interpretation of plant root capacitance. Journal of Experimental Botany. 63:6149-6159.

van Dijk JP, Cankar K, Hendriksen PJM, Beenen HGJ, Zhu M, Scheffer S, Shepherd LVT, Stewart D, Davies HV, Leifert C et al.. 2012. The identification and interpretation of differences in the transcriptomes of organically and conventionally grown potato tubers. Journal of Agricultural and Food Chemistry. 60:2090-2101.

van Dijk JP, Cankar K, Scheffer SJ, Beenen HGJ, Shepherd LVT, Stewart D, Davies HV, Wilcockson SJ, Leifert C, Gruden K et al.. 2009. Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract

Dimier C, Brunet C, Geider RD, Raven JA. 2009. Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnology and Oceanography. 54:823-836.

Dimitrova-Petrova K, Geris J, Wilkinson ME, Rosolem R, Verrot L, Lilly A, Soulsby C. 2020. Opportunities and challenges in using catchment-scale storage estimates from cosmic ray neutron sensors for rainfall-runoff modelling. Journal of Hydrology. 586:ArticleNo.124878.

Dimitrova-Petrova K, Geris J, Wilkinson ME, Lilly A, Soulsby C. 2020. Using isotopes to understand the evolution of water ages in disturbed mixed land-use catchments. Hydrological Processes. 34:972-990.

Dincheva I, Badjakov I, Kondakova V, Dobson P, McDougall G, Stewart D. 2013. Identification of the phenolic components in Bulgarian raspberry cultivars by LC-ESI-MSn. International Journal of Agricultural Science Research. 3:127-137.

Ding Z, Feeley KJ, Wang Y, Pakeman RJ, Ding P. 2013. Patterns of bird functional diversity on land-bridge island fragments. Journal of Animal Ecology. 82:781-790.

Dinnie E, Blackstock KL, Dilley R. 2012. Landscapes of challenge and change: contested views of the Cairngorms National Park. Landscape Research. 37:451-466.

Dinnie E, Fischer A, Huband S. 2015. Discursive claims to knowledge: The challenge of delivering public policy objectives through new environmental governance arrangements. Journal of Rural Studies. 37:1-9.

Dinnie E, Brown KM, Morris S. 2013. Community, cooperation and conflict: negotiating the social wellbeing benefits of urban greenspace experience. Landscape and Urban Planning. 112:1-9.

Dinnie L, Fischer A. 2020. The trouble with community: How 'sense of community' influences participation in formal, community-led organisations and rural governance. Sociologia Ruralis. 60:243-259.

Dinnie E, Browne K. 2011. Creating a sexual self in heteronormative space: Integrations and imperatives amongst spiritual seekers at the Findhorn Community. Sociological Research Online. 16:Article7.

Dinnie E, Browne K. 2012. You again - what are you researching this time? can you ever "leave the field"? Fieldwork in Religion. 7:164-179.

Dinnie E, Holstead KL. 2018. The influence of public funding on community-based sustainability projects in Scotland. Environmental Innovation and Societal Transition. 29:25-33.

Dittrich R, Wreford A, Butler A, Moran D. 2016. The impact of flood action groups on the uptake of flood management measures. Climatic Change. 138:471-489.

Dittrich R, Butler A, Ball T, Wreford A, Moran D. 2019. Making real options analysis more accessible for climate change adaptation. An application to afforestation as a flood management measure in the Scottish Borders. Journal of Environmental Management. 245:338-347.

Dixon ER, Blackwell MSA, Dhanoa MS, Berryman Z, de la Fuente Martinez N, Junquera D, Martinez A, Murray PJ, Kemp HF, Meier-Augenstein W et al.. 2010. Measurement at the field scale of soil . Rapid Communications in Mass Spectrometry. 24:511-518.

Dobani S, Latimer C, McDougall GJ, Allwood JW, Pereira-Caro G, Moreno-Rojas JM, Ternan NG, Pourshahidi LK, Lawther R, Tuohy KM et al.. 2021. Ex vivo fecal fermentation of human ileal fluid collected after raspberry consumption modifies (poly)phenolics and modulates genoprotective effects in colonic epithelial cells. Redox Biology.. 40:ArticleNo.101862.

Dobson G, Shepherd T, Verrall SR, Griffiths DW, Ramsay G, McNicol JW, Davies HV, Stewart D. 2010. A metabolomics study of cultivated potato (Solanum tuberosum) groups, Andigena, Phureja, Stenotomum and Tuberosum using gas chromatography-mass spectrometry. Journal of Agricultural and Food Chemistry. 58:1214-1223.

Dobson P, Graham J, Stewart D, Brennan RM, Hackett CA, McDougall GJ. 2012. Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry. Journal of Agricultural and Food Chemistry. 60:5360-5366.

Dobson G, McDougall GJ, Stewart D, Cubero MA, Karjalainen RO. 2017. Effects of juice matrix and pasteurization on stability of black currant anthocyanins during storage. Journal of Food Science. 82:44-52.

Dobson G, Shepherd T, Verrall SR, Conner S, McNicol JW, Ramsay G, Shepherd LVT, Davies HV, Stewart D. 2008. Phytochemical diversity in tubers of potato cultivars and landraces using a GC-MS metabolomics approach. Journal of Agricultural and Food Chemistry. 56:10280-10291. Abstract

Dobson G, Vasukuttan V, Alexander CJ. 2012. Evaluation of different protocols for the analysis of lipophilic plant metabolites by gas chromatography - mass spectrometry using potato as a model. Metabolomics. 8:880-893.

Dobson G, Shrestha M, Hilz H, Karjalainen RO, McDougall GJ, Stewart D. 2012. Lipophilic components in black currant seed and pomace extracts. European Journal of Lipid Science and Technology. 114:575-582.

Dockter C, Gruszka D, Braumann I, Druka A, Druka I, Franckowiak J, Gough SP, Janeczko A, Kurowska M, Lundqvist J et al.. 2014. Induced variations in Brassinosteroid genes define barley height and sturdiness, and expand the green revolution genetic toolkit. Plant Physiology. 166:1912-1927.

Dolan A, MacFarlane SA, McGavin WJ, Brennan RM, McNicol JW. 2011. Blackcurrant reversion virus: validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants. Journal of Berry Research. 1:201-208.

Doll S, Kuhlmann M, Rutten T, Mette MF, Scharfenberg S, Petridis A, Berreth DC, Mock HP. 2018. Accumulation of the coumarin scopolin under abiotic stress conditions is mediated by the Arabidopsis thaliana THO/TREX complex. Plant Journal. 93:431-444.

Donahoo R, Blomquist CL, Thomas SL, Moulton JK, Cooke DEL, Lamour KH. 2006. Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycological Research. 110:1309-1322. Abstract

Donald KJ, Clarke HV, Mitchell C, Cornwell RM, Hubbard SF, Karley AJ. 2016. Protection of pea aphids associated with coinfecting bacterial symbionts persists during superparasitism by a braconid wasp. Microbial Ecology. 71:1-4.

Donn S, Griffiths BS, Neilson R, Daniell TJ. 2008. DNA extraction from soil nematodes for multi-sample community studies. Applied Soil Ecology. 38:20-26. Abstract

Donn S, Neilson R, Griffiths BS, Daniell TJ. 2011. Greater coverage of the phylum Nematoda for SSU rDNA studies. Biology and Fertility of Soils. 47:333-339.

Donn S, Neilson R, Griffiths BS, Daniell TJ. 2012. A novel molecular approach for rapid assessment of soil nematode assemblages û variation, validation and potential applications. Methods in Ecology and Evolution. 3:12-23.

Donn S, Wheatley RE, McKenzie BM, Loades KW, Hallett PD. 2014. Improved soil fertility from compost amendment increases root growth and reinforcement of surface soil on slopes. Ecological Engineering.. 71:458-465.

Donnelly RE, Katzner T, Gordon IJ, Gompper ME, Redpath S, Garner TWJ, Altwegg R, Reed DH, Acevedo-Whitehouse K, Pettorelli N. 2011. Putting the eco back in ecotourism. Animal Conservation. 14:325-327.

Donnelly D, Helliwell R, May L, McCreadie B. 2020. An assessment of the performance of the PLUS+ tool in supporting the evaluation of Water framework Directive compliance in Scottish standing waters. International Journal of Environmental Research and Public Health. 17:ArticleNo.391.

van Doorn WG, Beers EP, Dangl JL, Franklin-Tong VE, Gallois P, Hara-Nishimura I, Jones AM, Kawai-Yamada M, Lam E, Mundy J et al.. 2011. Morphological clasification of plant cell deaths. Cell Death and Differentiation. 18:1241-1246.

de Dorlodot S, Forster BP, Pag L, Price AH, Tuberosa R, Draye X. 2007. Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science. 12:474-481. Abstract

Dos Reis J FB, Simon MF, Gross E, Boddey RM, Elliott GN, Neto NE, Loureiro MdeF, de Queiroz LP, Scotti MR, Chen W-M et al.. 2010. Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.

Douglas DJT, Buchanan GM, Thompson PS, Amar A, Fielding DA, Redpath SM, Wilson JD. 2015. Vegetation burning for game management in the UK uplands is increasing and overlaps spatially with soil carbon and protected areas. Biological Conservation. 191:243-250.

Douglas DJT, Buchanan GM, Thompson P, Smith T, Cole T, Amar A, Fielding DA, Redpath SM, Wilson JD. 2016. Reply to comment on: Vegetation burning for game management in the UK uplands is increasing and overlaps spatially with soil carbon and protected areas. Biological Conservation. 195:295-296.

Douhard M, Loe LE, Stien A, Bonenfant C, Irvine RJ, Veiberg V, Ropstad E, Albon SD. 2016. The influence of weather conditions during gestation on life histories in a wild Arctic ungulate. Proceedings of the Royal Society, B.. 283:ArticleNo.20161760.

Doull L, Wattegedera SR, Longbottom D, Mwangi D, Nath M, Glass EJ, Entrican G. 2015. Late production of CXCL8 in ruminant oro-nasal turbinate cells in response to Chlamydia abortus infection. Veterinary Immunology and Immunopathology. 168:97-102.

Dove H, Milne JA. 2006. Intake and productivity of lambs grazing leafy or stemmy forage rape and the effect of energy or protein supplements. Australian Journal of Experimental Agriculture. 46(7):763-769.

Dove H, Milne JA, Lamb CS, Sibbald AM, McCormack HA. 2012. The influence of herbage mass and supplementary feeding on nutrient flows and animal performance in grazing, lactating ewes. Journal of Agricultural Science. 150:644-662.

Dove H, Mayes RW. 2006. Protocol for the analysis of n-alkanes and other plant-wax compounds and for their use as markers for quantifying the nutrient supply of large mammalian herbivores. Nature Protocols. 1(4):1680-1697.

Downie H, Holden N, Otten W, Spiers AJ, Valentine TA, Dupuy LX. 2012. Transparent soil for imaging the rhizosphere. PLoS ONE. 7:e44276.

Downie HF, Adu MO, Schmidt S, Otten W, Dupuy LX, White PJ, Valentine TA. 2015. Challenges and opportunities for quantifying roots and rhizosphere interactions through imaging and image analysis. Plant, Cell and Environment. 38:1213-1232.

Downie H, Valentine TA, Otten W, Spiers AJ, Dupuy LX. 2014. Transparent soil microcosms allow 3D spatial quantification of soil microbiological processes in vivo. Plant Signaling and Behavior. 9

Drakare S, Lennon JL, Hillebrand H. 2006. The imprint of the geographical, evolutionary and ecological context on species-area relationships. Ecology Letters. 9(2):215-227.

Drake AJ, O'Shaughnessy PJ, Bhattacharya S, Monteiro A, Kerrigan D, Goetz S, Raab A, Rhind SM, Sinclair KD, Meharg AA et al.. 2015. In utero exposure to cigarette chemicals induces sex-specific disruption of one-carbon metabolism and DNA methylation in the human fetal liver. BMC Medicine. 13

Dramstad D, Sang N. 2010. Tenancy in Norwegian agriculture. Land Use Policy. 27(3):946-956.

Dreissig S, Maurer A, Sharma R, Milne L, Flavell AJ, Schmutzer T, Pillen K. 2020. Natural variation in meiotic recombination rate shapes introgression patterns in intraspecific hybrids between wild and domesticated barley. New Phytologist, Published online..

Dresboll DB, Thorup-Kristensen K, McKenzie BM, Dupuy LX, Bengough AG. 2013. Timelapse scanning reveals spatial variation in tomato (Solanum lycopersicum L.) root elongation rates during partial waterlogging. Plant and Soil. 369:467-477.

Drew JE, Farquharson AJ, Horgan GW, Duthie SJ, Duthie GG. 2014. Postprandial cell defense system responses to meal formulations: Stratification through gene expression profiling. Molecular Nutrition and Food Research. 58:2066-2079.

Drits VA, Sakharov BA, Hillier S. 2018. Phase and structural features of tubular halloysite (7 angstrom). Clay Minerals. 53:691-720.

Driver T, Bajhaiya AK, Allwood JW, Goodacre R, Pittman JK, Dean AP. 2015. Metabolic responses of eukaryotic microalgae to environmental stress limit the ability of FT-IR spectroscopy for species identification. Algal Research- Biomass Biofuels and Bioproducts. 11:148-155.

Druka A, Potokina E, Luo ZW, Jiang N, Chen XW, Kearsey MJ, Waugh R. 2010. Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.

Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WTB, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A et al.. 2008. Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork. BMC Genetics. 9:-73. Abstract

Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Guzy-Wrobelska J, Ramsay L, Druka I, Grant I, Macaulay M et al.. 2010. Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38:683-688.

Druka A, Potokina E, Luo ZW, Bonar N, Druka I, Zhang L, Marshall DF, Steffenson BJ, Close TJ, Wise RP et al.. 2008. Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley. Theoretical and Applied Genetics. 117:261-272. Abstract