Publications list
Filters: First Letter Of Last Name is H [Clear All Filters]
A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology and Biochemistry. 41(7):1450-1456.
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2009.
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2009.
The potential for use of gastropod molluscs as bioindicators of endocrine disrupting compounds in the terrestrial environment. Journal of Environmental Monitoring. 11(3):491-497.
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2009.
Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development. Ecological Indicators. 9(6):1212-1221.
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2009.
Trace elements in recent groundwater of an artesian flow system and comparison with snow: enrichments, depletions, and chemical evolution of the water. Journal of Environmental Monitoring, 12, 208-217..
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Using long-term data sets to understand transit times in contrasting headwater catchments. Journal of Hydrology. 367(3-4):237-248.
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2009.
XANES speciation of P in environmental samples: an assessment of filter media for on-site wastewater treatment. Environmental Science and Technology. 42(17):6515-6521.
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2009.
The 172 kb genomic DNA region of the O. rufipogon ylg1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica. Functional & Integrative Genomics. 9:97-108.
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2009.
Biochemical properties and biodegradation of dissolved organic matter from soils. Biology and Fertility of Soils. 45:733-742. Abstract
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2009.
Biological approaches to global environmental change: mitigation and remediation. Current Biology. 19:R615-R623.
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2009.
Biological nitrification inhibition (BNI) - Is there potential for genetic interventions in Triticeae? Breeding Science. 59:529-545.
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2009.
Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.
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2009.
A brief outline of the development of plant virology in the 20th century. Journal of Plant Pathology. 91:509-520.
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2009.
The carbon footprints of food crop production. International Journal of Agicultural Sustainability. 7:107-118.
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2009.
CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.
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2009.
Centrifuge modelling of climatic effects on clay embankments. Proceedings of the Institution of Civil Engineers - Engineering Sustainability. 162:91-100.
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2009.
Characterisation of a novel air-liquid interface biofilm of Pseudomonas fluorescens SBW25. Microbiology. 155:1397-1406.
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2009.
Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.
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Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract
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2009.
Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
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2009.
Deep rooting and drought screening of cereal crops: A novel field-based method and its application.. Field Crops Research. 112:165-171. Abstract
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2009.
Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics. 10:-582.
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2009.
The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae). Theoretical and Applied Genetics. 118:205-211. Abstract
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2009.
Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract
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2009.
Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.
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2009.
Earthworms bring compacted and loose soils to a similar mechanical state. Soil Biology & Biochemistry. 41:656-658. Abstract
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2009.
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Ecosystem feedbacks and cascade processes: understanding their role in the responses of Arctic and alpine ecosystems to environmental change. Global Change Biology. 15:1153-1172. Abstract
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2009.
Ectopic 5' splice sites inhibit gene expression by engaging RNA surveillance and silencing pathways in plants. Plant Physiology. 151:955-965.
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2009.
The effect of earthworms and liming on soil microbial communities. Biology and Fertility of Soils. 45:361-369. Abstract
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2009.
Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. British Journal of Nutrition. 101:541-550.
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Environmental and seasonal influences on red raspberry anthocyanin antioxidant contents and identification of quantitative traits loci (QTL). Molecular Nutrition and Food Research. 53:625-634. Abstract
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2009.
Evaluating soil stabilisation by biological processes using step-wise aggregate fractionation. Soil and Tillage Research. 102:209-215.
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Functional approaches for assessing plant and invertebrate abundance patterns in arable systems. Basic and Applied Ecology. 10:34-42. Abstract
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2009.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
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2009.
How might we model an ecosystem? Ecological Modelling. 220:1935-1949.
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2009.
Identification and characterization of barley RNA-directed RNA polymerases. Biochimica et Biophysica Acta. 1789:375-385.
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2009.
Inter- and intra-specific exposure to parasites and pathogens via the faecal-oral route: a consequence of behaviour in a patchy environment. Epidemiology and Infection. 137:630-643.
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2009.
Isotopic evidence for the provenance and turnover of organic carbon by soil microorganisms in the Antarctic dry valleys. Environmental Microbiology. 11:597-608. Abstract
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Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
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2009.
Livestock grazing behavior and inter- versus intraspecific disease risk via the fecal-oral route. Behavioral Ecology. 20:426-432.
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2009.
Mapping QTLs for developmental traits in raspberry from bud break to ripe fruit. Theoretical and Applied Genetics. 118:1143-1155. Abstract
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Mechanical reinforcement of soil by willow roots: impacts of root properties and root failure mechanism. Soil Science Society of America Journal. 73:1276-1285. Abstract
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2009.
Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.
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2009.
Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
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2009.
No evidence for compensatory thermal adaptation of soil microbial respiration in the study of Bradford et al. (2008). Ecology Letters. 12:E12-E14.
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2009.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
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2009.
A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract
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2009.
Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
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2009.
Plant mechanisms to optimise access to soil phosphorus. Crop and Pasture Science. 60:124-143.
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2009.
Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
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Reappraising the role of plant nutrients as mediators of interactions between root- and foliar-feeding insects. Functional Ecology. 23:699-706. Abstract
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2009.
Recent patents on vitamin C: Opportunities for crop improvement and single-step biological manufacture. Recent Patents on Food, Nutrition and Agriculture. 1:39-49. Abstract
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2009.
Relationships between yield and mineral concentrations in potato tubers. Hortscience. 44:6-11. Abstract
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2009.
Rheological stabilisation of wet soils by model root and fungal exudates depends on clay mineralogy. European Journal of Soil Science. 60:525-538. Abstract
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2009.
Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.
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2009.
Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Computational Biology. 5:-e1000317.
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2009.
Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
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2009.
Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.
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2009.
Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
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2009.
Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.
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2009.
Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.
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2009.
Shrub encroachment can reverse desertification in semi-arid Mediterranean grasslands. Ecology Letters. 12:930-941. Abstract
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2009.
Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.
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The sources of phosphorus in the waters of Great Britain. Journal of Environmental Quality. 38:13-26. Abstract
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2009.
Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
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2009.
Strategies for monitoring and managing mass populations of toxic cyanobacteria in recreational waters: A multi-interdisciplinary approach. Environmental Health. 8 Supplement 1:-S11.
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2009.
Strawberry polyphenols are equally cytotoxic to tumourigenic and normal human breast and prostate cell lines. International Journal of Oncology. 34:777-786.
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2009.
The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.
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2009.
Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.
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2009.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
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Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
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2009.
Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
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The zig-zag-zig in oomycete-plant interactions. Molecular Plant Pathology. 10:547-562.
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Agro-environmental project duration and effectiveness in South-East Asia. Outlook on Agriculture. 39(2):107-113.
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2010.
Analysing visual landscape complexity: theory and application. Landscape Research. 35(1):111-131.
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2010.
Aqua regia extractable selenium contents of some Scottish topsoils measured by ICP-MS and the relationship with mineral and organic components. Journal of the Science of Food and Agriculture. 90(6):972-980.
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2010.
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Assessing the vulnerability of blanket peat to climate change using an ensemble of statistical bioclimatic envelope models. Climate Research. 45:131-150.
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2010.
Bioclimatic envelope model of climate change impacts on blanket peatland distribution in Great Britain. Climate Research. 45:151-162.
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2010.
Capturing coastal geomorphological change within regional integrated assessment: an outcome-driven fuzzy logic approach. Journal of Coastal Research. 26(5):831-842.
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2010.
Consequences of feasible future agricultural land use change on soil organic carbon stocks and greenhouse gas emissions in Great Britain. Soil Use and Management. 26(4):381-398.
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2010.
Culling wildlife hosts to control disease: mountain hares, red grouse and louping ill virus. Journal of Applied Ecology. 46(4):926-930.
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2010.
Degradation of yew, ragwort and rhododendron toxins during composting. The Science of the Total Environment. 408(19):3128-4137.
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2010.
Detection of nitrogen deficiency in potato plants using gene expression markers. American Journal of Potato Research. 87(1):50-59.
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2010.
Developing greenhouse gas marginal abatement cost curves for agricultural emissions from crops and soils in the UK. Agricultural Systems. 103(4):198-209.
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2010.
Differences and commonalities in physical, chemical and mineralogical properties of Zanzibari geophagic soils. Journal of Chemical Ecology.. 36(1):129-140.
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Effects of environmental pollutants on the reproduction and welfare of ruminants. Animal. 4(7):1227-1239.
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2010.
Environmental myopia: a diagnosis and a remedy. Trends in Ecology and Evolution. 25(10):556-561.
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2010.
Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties. Climate Research. 45:179-192.
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2010.
Estimating changes in Scottish soil carbon stocks using ECOSSE. II. Application. Climate Research. 45:179-192.
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2010.
Experimental evidence for herbivore limitation of the treeline. Ecology. 91(11):3414-3420.
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The functional response of a generalist predator. PLoS ONE. 5(5):e10761.
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The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.
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2010.
Geophagy and potential health implications: geohelminths, microbes and heavy metals. Transactions of the Royal Society of Tropical Medicine and Hygiene. 104(12):787-795.
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2010.
Grazing across grass: shrub boundaries: Can spatial heterogeneity increase resistance? Agriculture, Ecosystems and Environment. 139(1-2):159-166.
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2010.
How important is plot relocation accuracy when interpreting re-visitation studies of vegetation change? Plant Ecology and Diversity. 3(1):1-8.
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2010.
The identification of priority opportunities for UK nature conservation policy. Journal of Applied Ecology. 47(5):955-965.
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Impacts of extensive grazing and abandonment on grassland soils and productivity. Agriculture, Ecosystems and Environment. 139:476-482.
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2010.
Inferring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5(6):451-464.
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2010.
Influence of prenatal nutrition and obesity on tissue specific fat mass and obesity-associated (FTO) gene expression. Reproduction. 139(1):265-274.
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2010.
Integrating soil quality changes to arable agricultural systems following organic matter addition, or adoption of a ley-arable rotation. Applied Soil Ecology. 46(1):43-53.
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2010.
Integrating water and agricultural management under climate change. The Science of the Total Environment. 408(23):5619-5622.
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2010.
Interactions among agricultural production and other ecosystem services delivered from European temperate grassland systems. Advances in Agronomy. 109:117-154.
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Is vegetation composition or soil chemistry the best predictor of the soil microbial community? Plant and Soil. 333(1-2):417-430.
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2010.
Lifetime exposure to arsenic in residential drinking water in Central Europe. International Archives of Occupational and Environmental Health. 83(5):471-481.
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2010.
Linking monitoring and modelling: can long-term datasets be used more effectively as a basis for large-scale prediction? Biogeochemistry. 101(1-3):211-227.
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2010.
Measurement of soil characteristics for forensic applications. Surface and Interface Analysis. 42(5):363-377.
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Novel environment exploration and home range size in starlings Sturnus vulgaris. Behavioral Ecology. 21(6):1321-1329.
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2010.
Open-system chemical behavior in deep Wilcox Group mudstones, Texas Gulf. Marine and Petroleum Geology.. 27(9):1804-1818.
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2010.
Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils. Nature Genetics. 42:260-U42.
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2010.
The present is the key to the past, but what does the future hold for the recovery of surface waters from acidification? Water Research. 44(10):3166-3180.
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2010.
Quantification of effects of season and nitrogen supply on tree belowground carbon transfer. New Phytologist. 187(2):485-493.
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2010.
Quantifying the contribution of soil organic matter turnover to forest soil respiration using natural abundance delta 13C. Soil Biology and Biochemistry. 42(6):935-943.
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2010.
Quantifying uptake rate of potassium from soil in a long-term gras rotation experiment. Plant and Soil. 335(1-2):3-19.
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2010.
The response of organic matter mineralisation to nutrient and substrate additions in sub-arctic soils. Soil Biology and Biochemistry. 42(1):92-100.
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2010.
The risk of peat erosion from climate change: land management combinations: an assessment with bayesian belief networks. Human and Ecological Risk Assessment. 16(5):962-976.
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2010.
Rock building fungi. Geomicrobiology Journal. 27(6-7):624-629.
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2010.
Sentinel systems on the razor's edge: effects of warming on Arctic geothermal stream ecosystems. Global Change Biology. 16(7):1979-1991.
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2010.
State dependent dynamics of cycles in red grouse abundance. Ecography. 33(5):896-905.
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2010.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.
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2010.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
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2010.
Uncertainty evaluation of mass discharge estimates from a contaminated site using a fully Bayesian framework. Water Resources Research. 46(W12552)
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2010.
The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.
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2010.
Ancient class of translocated oomycete effectors targets the host nucleus. Proceedings of the National Academy of Sciences, USA. 107:17421-17426.
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Arable plant communities as indicators of farming practice. Agriculture, Ecosystems and Environment. 138:17-26.
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2010.
Ascorbic acid content of blackcurrant fruit is influenced by both genetic and enviromental factors. Functional Plant Science and Biotechnology. 4:40-52.
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2010.
Assessing beef carcass tissue weights using computed tomography spirals of primal cuts. Meat Science. 84:30-38.
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2010.
Automated saccharification assay for determination of digestibility in plant materials. Biotechnology for Biofuels. 3:-23.
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2010.
BacA is essential for bacteroid development in nodules of galegoid, but not phaseoloid, legumes. Journal of Bacteriology. 192:2920-2928.
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BAX INHIBITOR-1 is required for full susceptibility of barley to powdery mildew. Molecular Plant-Microbe Interactions. 23:1217-1227.
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2010.
Below-ground herbivory and root toughness: a potential model system using lignin-modified tobacco. Physiological Entomology. 35:186-191. Abstract
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2010.
Bioactive berry components: Potential modulators of health benefits. Functional Plant Science and Biotechnology. 4:34-38.
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2010.
Biohydrology: coupling biology and soil hydrology from pores to landscapes preface. Ecohydrology. 3:379-381.
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A Brassica exon array for whole-transcript gene expression profiling. PLoS One. 5:-e12812.
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2010.
Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.). BMC Plant Biology. 10:-202.
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2010.
Centrifuge modelling of soil slopes reinforced with vegetation. Canadian Geotechnical Journal. 47:1415-1430.
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2010.
Cereal variety identification using MALDI-TOF mass spectrometry SNP genotyping. Journal of Cereal Science. 52:356-361.
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2010.
Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.
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2010.
Chemical characterization of microbial-dominated soil organic matter in the Garwood Valley, Antarctica. Geochimica et Cosmochimica Acta. 74:6485-6498.
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2010.
Combining plant resistance and a natural enemy to control Amphorophora idaei. BioControl. 55:321-327.
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2010.
Competition for land. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 365:2941-2957.
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2010.
Coordination of plant cell division and expansion in a simple morphogenetic system. Proceedings of the National Academy of Sciences, USA. 107:2711-2716.
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2010.
Developing a reliable strategy to infer the effective soil hydraulic properties from field evaporation experiments for agro-hydrological models. Agricultural Water Management. 97:399-409.
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Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.
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2010.
Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environmental Microbiology. 12:304-314.
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Does microbial habitat or community structure drive the functional stability of microbes to stresses following re-vegetation of a severely degraded soil? Soil Biology and Biochemistry. 42:850-859.
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2010.
Effect of increased consumption of whole-grain foods on blood pressure and other cardiovascular risk markers in healthy middle-aged persons: a randomised controlled trial. American Journal of Clinical Nutrition. 94:733-740.
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2010.
Effect of method of conservation of timothy on endogenous nitrogen flows in lactating dairy cows. Journal of Dairy Science. 93:4252-4261.
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2010.
Effect of salinity on water relations of wild barley plants differing in salt tolerance. AoB Plants. :-plq006.
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Effects of group composition on the grazing behaviour of herbivores. Animal Behaviour. 80:527-534.
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2010.
An efficient procedure for normalising ionomics data for Arabidopsis thaliana. New Phytologist. 186:270-274.
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2010.
An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One. 5:-e8598.
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2010.
Evaluating energy intake measurement in free-living subjects: when to record and for how long? Public Health Nutrition. 13:172-180.
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2010.
Ex vivo magnetic resonance imaging of crystalline lens dimensions in chicken. Molecular Vision. 16:144-153.
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2010.
Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38:683-688.
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2010.
Flavonoid profiling and transcriptome analysis reveals new gene-metabolite correlations in tubers of Solanum tuberosum L. Journal of Experimental Botany. 61:1225-1238.
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2010.
Genetic analysis of potassium use efficiency in Brassica oleracea. Annals of Botany. 105:1199-1210.
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2010.
Genetic and environmental effects influencing fruit colour and QTL analysis in raspberry. Theoretical and Applied Genetics. 121:611-627.
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2010.
Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
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2010.
Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.
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2010.
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HIGS: Host-induced gene silencing in the obligate biotrophic fungal pathogen Blumeria graminis. Plant Cell. 22:3130-3141.
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2010.
The hydrological response of heavy clay grassland soils to rainfall in south-west England using . Rapid Communications in Mass Spectrometry. 24:475-482.
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2010.
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Impact of sulphur fertilisation on crop response to selenium fertilisation. Plant and Soil. 332:31-40.
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2010.
Insect endosymbionts: manipulators of insect herbivore trophic interactions? Protoplasma. 244:25-51.
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2010.
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Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
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2010.
Is vegetation composition or soil chemistry the best predictor of the soil microbe community? Plant and Soil. 333:417-430.
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2010.
The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.
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2010.
A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
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2010.
Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.
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2010.
Modelling nonstationary gene regulatory processes. Advances in Bioinformatics. :-749848.
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2010.
Modelling the effects of previous infection and re-infection on the costs of bovine viral diarrhoea outbreaks in beef herds. Veterinary Journal. 185:138-143.
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2010.
The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.
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2010.
Movement of newly assimilated 13C carbon in the grass Lolium perenne and its incorporation into rhizosphere microbial DNA. Rapid Communications in Mass Spectrometry. 24:535-540.
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2010.
Multi-environment QTL mapping in blackcurrant (Ribes nigrum L.) using mixed models. Theoretical and Applied Genetics. 121:1483-1488.
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2010.
Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity. EMBO Journal. 29:1149-1161.
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2010.
Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.
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2010.
PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract
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2010.