Publications list
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Climate change and food security. Philosophical Transactions of the Royal Society of London - Series B. 360:2139-2148. Abstract
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2005.
A comparative analysis of transcript abundance using SAGE and Affymetrix arrays. Functional & Integrative Genomics. 5:163-174. Abstract
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2005.
Direct targeting and rapid isolation of BAC clones spanning a defined chromosome region. Functional & Integrative Genomics. 5:97-103. Abstract
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2005.
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2005.
Picophytoplankton: bottom-up and top-down controls on ecology and evolution. Vie et Milieu - Life and Environment. 55:209-215. Abstract
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2005.
Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
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2005.
Behavioral strategies of mammal herbivores against plant secondary metabolites: the avoidance-tolerance continuum. Journal of Chemical Ecology. 32(6):1115-1132.
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2006.
The BMW model evaluation tool: a guidance document. Archiv fur Hydrologie: Large Rivers Supplement. 17:23-48.
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2006.
Diversity and expression of nitrogenase genes (nifH) from ectomycorrhizas of Corsican pine (Pinus nigra). Environmental Microbiology. 8(12):2224-2230.
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2006.
Endobacteria in some ectomycorrhiza of Scots pine (Pinus sylvestris). FEMS Microbiology Ecology. 56(1):34-43.
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2006.
The extended phenotype of Scots pine (Pinus sylvestris) structures the understorey assemblage. Ecography. 29(3):451-457.
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2006.
Having it all - historical energy intakes do not generate the anticipated trade-offs in fecundity. Proceedings of the Royal Society of London, B. 273(1592):1369-1374.
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2006.
Impact of water table depth on forest soil methane turnover in laboratory soil cores deduced from natural abundance and tracer 13C stable isotope experiments. Isotopes in Environmental and Health Studies. 42(4):379-390.
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2006.
Is your model susceptible to floating-point errors? Journal of Artificial Societies and Social Simulation. 9(4):4.
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2006.
Living with dementia in rural and remote Scotland: Diverse experiences of people with dementia and their carers. Journal of Rural Studies. 22:161-176.
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2006.
Low level parasitic worm burdens reduce body condition in free ranging red deer (Cervus elaphus). Parasitology. 133(4):465-475.
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2006.
Process for benchmarking models: dialogue between water managers and modellers. Archiv fur Hydrologie, Large Rivers Supplement. 17(1-2):3-21.
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2006.
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2006.
Selection of trees for rubbing by red and roe deer in forest plantations. Forest Ecology and Management. 222(1-3):39-45.
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2006.
Testing five hypotheses of sexual segregation in an arctic ungulate. Journal of Animal Ecology. 75(2):485-496.
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2006.
A theory of associating food types with their post-ingestive consequences. American Naturalist. 167(5):705-716.
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2006.
What every agent-based modeller should know about floating point arithmetic. Environmental Modelling and Software. 21(3):283-309.
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2006.
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2006.
Ethylene and carbon dioxide production by developing strawberries show a correlative pattern that is indicative of ripening climacteric fruit. Physiologia Plantarum. 127:247-259. Abstract
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2006.
Activity pattern of arctic reindeer in a predator-free environment - no need to keep a daily rhythm. Oecologia. 152(4):617-624.
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2007.
Assessment and implications of intra-specific and phenological variability in monoterpenes of Scots pine (Pinus sylvestris) foliage. Journal of Chemical Ecology. 33(3):477-491.
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2007.
Associations between basal metabolic rate and reproductive performance in C57BL/6J mice. Journal of Experimental Biology. 210(1):65-74.
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2007.
Carbon dynamics in a model grassland with functionally different soil communities. Functional Ecology. 21(4):690-697.
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2007.
Characterisation of endobacterial communities in ectomycorrhizas by DNA and RNA based molecular methods. Soil Biology and Biochemistry. 39(4):891-899.
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2007.
Comparison of empirical methods for building agent-based models in land use science. Journal of Land Use Science. 2(1):31-55.
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2007.
Cost of carrying radio transmitters: a test with racing pigeons Columbia livia. Wildlife Biology. 13(3):238-243.
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2007.
Evidence for a trade-off between early growth and tooth wear in Svalbard reindeer. Journal of Animal Ecology. 76(6):1139-1148.
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2007.
The impact of quality uncertainty without asymmetric information. Journal of Business Research. 60:858-867.
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2007.
Parasites and the dynamics of wild mammal populations. Animal Science. 82(6):775-781.
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2007.
Predicting the effects of body fatness on food intake and performance of sheep. British Journal of Nutrition. 97(6):1206-1215.
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2007.
Transient and asymptotic dynamics of reinforcement learning in games. Games and Economic Behavior. 61(2):259-276.
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2007.
Use of real-time RT-PCR to determine the prevalence of louping ill virus in live red grouse chicks. Veterinary Record. 161:660-661.
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2007.
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2007.
Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots. Transgenic Research. 16:51-63. Abstract
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2007.
Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
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2007.
Bacteria associated with ectomycorrhizas of slash pine (Pinus elliottii) in south eastern Queensland, Australia. FEMS Microbiology Letters. 282(2):196-204.
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2008.
The development and application of water management sustainability indicators in Brazil and Scotland. Journal of Environmental Management.. 88(14):1190-1201.
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2008.
Diversity of predominant endophytic bacteria in European deciduous and coniferous trees. Canadian Journal of Microbiology. 54(3):173-179.
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2008.
Exposure assessment of carcass disposal options in the event of a notifiable exotic animal disease: application to avian influenza virus. Environmental Science and Technology. 42(9):3145.
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2008.
The influence of afforestation and tree species on soil methane fluxes from shallow organic soils at the UK Gisburn Forest Experiment. Soil Use and Management. 24(1):1-7.
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2008.
Reducing tick burdens on chicks by treating breeding female grouse with permethrin. Journal of Wildlife Management. 72(2):468-472.
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2008.
Reinforcement learning dynamics in social dilemmas. Journal of Artificial Societies and Social Simulation.. 11(2.1)
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2008.
Berry extracts exert different antiproliferative effects against cervical and colon cancer cells grown in vitro. Journal of Agricultural and Food Chemistry. 56:3016-3023. Abstract
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2008.
Climate change and the current 'food crisis'. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 3, 090:1-10. Abstract
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2008.
Evidence of neutral transcriptome evolution in plants. New Phytologist. 180:587-593. Abstract
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2008.
Heading date QTL in a spring x winter barley cross evaluated in Mediterranean environments. Molecular Breeding. 21:455-471. Abstract
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2008.
Heterogeneity in the distribution of genetically modified and conventional oilseed rape within fields and seed lots. Transgenic Research. 17:805-816. Abstract
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2008.
Human colonic microbiota associated with diet, obesity and weight loss. International Journal of Obesity. 32:1720-1724.
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2008.
Intraspecific variation in Capsella bursa-pastoris in plant quality traits for insect herbivores. Weed Research. 48:147-156. Abstract
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2008.
The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
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2008.
Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
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2008.
Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
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2008.
The role of agronomic research in climate change and food security policy. Agriculture, Ecosystems and Environment. 126:4-12. Abstract
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2008.
Can managers inform models? Integrating local knowledge into models of red deer habitat use Journal of Applied Ecology. 46(2):344-352.
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2009.
The effect of host movement on viral transmission dynamics in a vector-borne disease system. Parasitology. 136(10):1221-1234.
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2009.
Evaluating capture stress and its effects on reproductive success in Svalbard reindeer. Canadian Journal of Zoology. 87(1):73-85.
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2009.
Functional principal component data analysis: A new method for analysing microbial community fingerprints. Journal of Microbiological Methods. 79(1):89-95.
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2009.
Increased mass of reticulo-rumen tissue and contents with advancing age in Svalbard reindeer. Journal of Zoology. 278(1):15-23.
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2009.
Is there a cost of parasites to caribou? Parasitology. 136(2):253-265.
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2009.
Spatial distribution of fungal communities in a coastal grassland soil. Soil Biology and Biochemistry. 41(2):414-416.
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2009.
Biological nitrification inhibition (BNI) - Is there potential for genetic interventions in Triticeae? Breeding Science. 59:529-545.
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2009.
Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
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2009.
The development of immune responses in Balb/c mice following inoculation with attenuated or virulent Neospora caninum tachyzoites. Parasite Immunology. 31:392-401.
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2009.
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2009.
Integrating pests and pathogens into the climate change/food security debate. Journal of Experimental Botany. 60:2827-2838. Abstract
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2009.
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2009.
Distribution of mountain hares (Lepus timidus) in Scotland: results from a questionnaire. Mammal Review. 40(4):313-326.
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2010.
The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.
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2010.
Identifying conflicts and opportunities for collaboration in the management of a wildlife resource: a mixed-methods approach. Wildlife Research. 37(8):647-657.
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2010.
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2010.
Influence of riparian cover on stream temperatures and the growth of the mayfly Baetis rhodani in an upland stream. Aquatic Ecology. 44(4):669-678.
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2010.
Regeneration of Salix arbuscula and Salix lapponum within a large mammal exclosure: the impacts of microsite and herbivory. Restoration Ecology. 18(Suppl. 1):1-9.
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2010.
The threatened plant intermediate wintergreen (Pyrola media Sw.) associates with a wide range of biotrophic fungi in native Scottish pine woods. Biodiversity and Conservation. 19(14):3963-3971.
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2010.
Understanding and influencing behaviour change by farmers to improve water quality. The Science of the Total Environment. Published online. 408(23):5631-5638.
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2010.
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2010.
Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.
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2010.
Development of retrotransposon-based SSAP molecular marker system for study of genetic diversity in sea holly (Eryngium maritimum L.). Plant Genetic Resources - Characterization and Utilization. 8:258-266.
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2010.
Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
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2010.
Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health. 10:-423.
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2010.
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2010.
Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
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2010.
Re-description of Cryptosporidium cuniculus Inman and Takeuchi 1979 (Apicomplexa:Cryptosporidiidae): morphology, biology and phylogeny. International Journal for Parasitology. 40:1539-1548.
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2010.
Sustainable disease control using weeds as indicators: Capsella bursa pastoris and Tobacco Rattle Virus. Weed Research. 50:511-514.
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2010.
Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science. 333:876-879.
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2011.
Blood mineral status of grazing Tibetan sheep in the Northeast of the Qinghai-Tibetan Plateau. Livestock Science. 136:102-107.
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2011.
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2011.
Climatic modifiers of the response to nitrogen deposition in peat-forming Sphagnum mosses: a meta-analysis. New Phytologist. 191:496-507.
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2011.
Development of a serodiagnostic test for sheep scab using recombinant protein Pso o 2. Molecular and Cellular Probes. 25:212-218.
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2011.
Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology. 179:209-215.
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2011.
Do multiple herbivores maintain chemical diversity of Scots pine monoterpenes? Philosophical Transactions of the Royal Society, Series B. 366:1337-1345.
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2011.
Dominant and diet-responsive groups of bacteria within the human colonic microbiota. International Society for Microbial Ecology (ISME) Journal. 5:220-230.
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2011.
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2011.
High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health. American Journal of Clinical Nutrition. 93:1062-1072.
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2011.
Molecular techniques and classical taxonomy on plant-parasitic nematodes diagnosis. Annual Review of Plant Pathology. 19:309-336.
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2011.
Organization and evolution of subtelomeric satellite repeats in the potato genome. Genes Genomes Genetics. 1:85-92.
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2011.
Osmotic stress tolerance of Capsella bursa-pastoris seeds contributes to bet-hedging in arable fields. Association of Applied Biologists - Agricultural Ecology Research: It's Role in Delivering Sustainable Farm Systems, Dundee, 15-16 June 2011. Aspects of Applied Biology. 109:39-40.
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2011.
The presence of sheep leads to increases in plant diversity and reductions in the impact of deer on heather. Journal of Applied Ecology. 48:1269-1277.
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2011.
Resistance to powdery mildew in Spanish barley landraces is controlled by different sets of quantitative trait loci. Theoretical and Applied Genetics. 123:1019-1028.
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2011.
Seasonal patterns of photochemical capacity and spring phenology reveal genetic differentiation among native Scots pine (Pinus sylvetsris L.) populations in Scotland. Forest Ecology and Management. 262:1020-1029.
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2011.
Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biophyton. BMC Bioinformatics. 13:209.
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2012.
Biological nitrification inhibition (BNI) - a novel strategy to regulate nitrification in agricultural systems. Advances in Agronomy. 114:249-302.
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2012.
Co-adaptation of seed dormancy and flowering time in the arable weed Capsella bursa-pastoris (shepherd's purse). Annals of Botany. 109:481-489.
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2012.
Congruent responses to weather variability in high arctic herbivores. Biology Letters. 8:1002-1005.
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2012.
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2012.
Disease transmission in an extreme environment: Nematode parasites infect reindeer during the Arctic winter. International Journal for Parasitology. 42:789-795.
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2012.
Equine cestodosis: a sero-epidemiological study of Anoplocephala perfoliata infection in Ethiopia. Veterinary Research Communication. 36:93-98.
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2012.
Gasterophilosis: a major cause of rectal prolapse in working donkeys in Ethiopia. Tropical Animal Health and Production. 44:757-762.
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2012.
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2012.
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2012.
A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris L. Medic (shepherd's purse). Annals of Botany. 109:419-427.
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2012.
Mineralogy and chemical forms of lead and zinc in abandoned mine wastes and soils: an example from Morocco. Journal of Geochemical Exploration. 113:56-67.
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2012.
Mountain forestry policy and strategies in response to climate change challenges: the case of the Ukrainian Carpathians. Journal of Economy and Ecology..
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2012.
Nodulation and ecological significance of indigenous legumes in Scotland and Sweden. Symbiosis. 57:133-48.
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2012.
Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
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2012.
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2012.
Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method. Veterinary Parasitology. 188:120-126.
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2012.
Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross. Crop Science. 52:2469-2480.
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2012.
Rufous-legged owl (Strix rufipes) and Austral pygmy owl (Glaucidium nanum) stand use in a gradient of disrupted and old growth Andean temperate forests, Chile. Studies on Neotropical Fauna and Environment. 47:33-40.
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2012.
A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Current Biology. 22:1595-1600.
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2012.
The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485:635-641.
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2012.
Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
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2012.
Triggering change: towards a conceptualisation of major change processes in farm decision-making. Journal of Environmental Management. 104:142-151.
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2012.
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2013.
Among population differentiation at nuclear genes in native Scots pine (Pinus sylvestris L.) in Scotland. Flora - Morphology, Distribution, Functional Ecology of Plants. 208:79-96.
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2013.
Anticipating and managing future trade-offs and complementarities between ecosystem services. Ecology and Society, 18, 5..
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2013.
Considering the source: Commercialisation and trust in agri-environmental information and advisory services in England. Journal of Environmental Management. 118:96-205.
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2013.
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2013.
Europe-wide dampening of population cycles in keystone herbivores. Science. 340:63-66.
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2013.
Field efficacy of praziquantel oral paste against naturally acquired equine cestodes in Ethiopia. Parasitology Research. 112:141-146.
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2013.
Genetic diversity in caribou linked to past and future climate change. Nature Climate Change. 4:132-137.
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2013.
Habitat monitoring in the wider countryside: A case study on the pursuit of innovation in red deer management. Journal of Environmental Management. 128:779-786.
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2013.
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2013.
Influence of scale on thermal characteristics in a large montane river basin. River Research Applications. 29:403-419.
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2013.
Knowledge Exchange: a review and research agenda for environmental management. Environmental Conservation. 40:19-36.
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2013.
Microsite affects willow sapling recovery from bank vole (Myodes glareolus) herbivory, but does not affect grazing risk. Annals of Botany. 112:731-739.
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2013.
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2013.
Quantitative trait loci for agronomic traits in an elite barley population for Mediterranean conditions. Molecular Breeding. 33:249-265.
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2013.
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2013.
Spring phenology shows genetic variation among and within populations in seedlings of Scots pine (Pinus sylvestris L.) in the Scotish Highlands. Plant Ecology and Diversity. 6:523-536.
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2013.
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2013.
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2013.
Walking for well-being: are group walks in certain types of natural environments better for well-being than group walks in urban environments? International Journal of Environmental Research and Public Health. 10:5603-5628.
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2013.
Ash dieback in the UK: a review of the ecological and conservation implications and potential management options. Biological Conservation. 175:95-109.
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2014.
Assessing the influence of compost and biochar amendments on the mobility and toxicity of metals and arsenic in a naturally contaminated mine soil. Environmental Pollution. 186:195-202.
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2014.
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2014.
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2014.
Cytokine expression in the placenta of pregnant cattle after inoculation with Neospora caninum. Veterinary Immunology and Immunopathology. 161:77-89.
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2014.
DTREEv2, a computer-based support system for the risk assessment of genetically modified plants. New Biotechnology. 31:166-171.
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2014.
E-coli O157 on Scottish cattle farms: Evidence of local spread and persistence using repeat cross-sectional data. BMC Veterinary Research. 10
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2014.
Effects of riparian buffer strips on ground beetles (Coleoptera, Carabidae) within an agricultural landscape. Insect Conservation and Diversity. 7:172-184.
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2014.
Evaluating wider benefits of natural flood management strategies: an ecosystem-based adaptation perspective. Hydrology Research. 45:774-787.
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2014.
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2014.
Genotypic variation in a foundation tree (Populus tremula L.) explains community structure of associated epiphytes. Biology Letters. 10:ArticleNo.20140190.
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2014.
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2014.
Incentivising the collaborative management of ecological resources: a case study of wild deer in the UK. Land Use Policy. 36:485-491.
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2014.
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2014.
The influence of information provision on people's landscape preferences: a case study on understorey vegetation of deer-browsed woodlands. Landscape and Urban Planning. 124:129-139.
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2014.
Investigating the loss of recruitment potential in red grouse (Lagopus lagopus scoticus): the relative importance of hen mortality, food supply, tick infestation and louping-ill. European Journal of Wildlife Research. 60:313-322.
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2014.
Leptosphaeria spp., phoma stem canker and potential spread of L. maculans on oilseed rape crops in China. Plant Pathology. 63:598-612.
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2014.
Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell and Environment. 37:1276-1298.
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2014.
Mapping socio-economic performance in rural Scotland. Scottish Geographical Journal. 130:1-21.
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2014.
The need to disentangle key concepts from Ecosystem Approach jargon. Conservation Biology. 28:1215-1224.
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2014.
Permeable reactive interceptors - blocking diffuse nutrient and greenhouse gases losses in key areas of the farming landscape. Journal of Agricultural Science. 152:S71-S81.
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2014.
Pinus sylvestris sapling growth and recovery from mammalian browsing. Forest Ecology and Management. 325:18-25.
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2014.
The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts. Ecology and Evolution. 4:4701-4735.
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2014.
Quantifying preferences for the natural world using monetary and non-monetary assessments of value. Conservation Biology. 28:404-413.
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2014.
A systematic review of the health and well-being benefits of biodiverse environments. Journal of Toxicology and Environmental Health, Part B: Critical Reviews. 17:1-20.
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2014.
Tracking (poly)phenol components from raspberries in ileal fluid. Journal of Agricultural and Food Chemistry. 62:7631-7641.
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2014.
What personal and environmental factors determine frequency of urban greenspace use? International Journal of Environmental Research and Public Health. 11:7977-7992.
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2014.
Addressing "nature-deficit disorder": a mixed methods pilot study of young adults attending a wilderness camp. Evidence based Complimentary and Alternative Medicine. Article No. 651827
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2015.
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2015.
The deubiquitinating enzyme AMSH1 is required for rhizobial infection and nodule organogenesis in Lotus japonicus. The Plant Journal. 83:719-731.
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2015.
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2015.
The dynamics of co-management and social capital in protected area management - The Cardoso Island State Park in Brazil. World Development. 67:475-489.
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2015.
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2015.
Global Research Alliance Modelling Platform (GRAMP): An open web platform for modelling greenhouse gas emissions from agro-ecosystems. Computers and Electronics in Agriculture. 111:112-120.
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2015.
Hierarchical Bayesian model approach for estimating soil CO2 flux: a case study in central Hokkaido, Japan. Soil Science and Plant Nutrition. 61:116-132.
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2015.
Historical influences on the current provision of multiple ecosystem services. Global Environmental Change - Human and Policy Dimensions. 31:307-317.
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2015.
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2015.
Identification and evaluation of vaccine candidate antigens from the poultry red mite (Dermanyssus gallinae). International Journal for Parasitology, 45, 819-830..
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2015.
Improving intercropping: a synthesis of research in agronomy, plant physiology and ecology. New Phytologist. 206:107-117.
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2015.
Landscape-scale vegetation patterns influence small-scale grazing impacts. Biological Conservation. 192:218-225.
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2015.
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2015.
Moving beyond green: Exploring the relationship of environment type and indicators of perceived environmental quality on emotional well-being following group walks. International Journal of Environmental Research and Public Health. 12:106-130.
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2015.
Prospects for payments for ecosystem services in the Brazilian Pantanal: a scenario analysis. The Journal of Environment and Development. 24:26-53.
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2015.
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2015.
Selection footprints in barley breeding lines detected by combining genotyping-by-sequencing with reference genome information. Molecular Breeding. 35:Article11.
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2015.
Spatially segregated foraging patterns of moose (Alces alces) and mountain hare (Lepus timidus) in a subarctic landscape: different tables in the same restaurant? Canadian Journal of Zoology. 93:391-396.
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2015.
Supply of online environmental information to unknown demand: the importance of interpretation and liability related to a national network of river level data. Scottish Geographical Journal. 131:245-252.
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2015.
Vaccination of pigs with the S48 strain of Toxoplasma gondii - safer meat for human consumption. Veterinary Research. 46
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2015.
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2016.
Behavioral buffering of extreme weather events in a high- Arctic herbivore. Ecosphere. 7:1-13.
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2016.