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Johnson SN, Birch ANE, Gregory PJ, Murray PJ.  2006.  The 'mother knows best' principle: should soil insects be included in the preference-performance debate? Ecological Entomology. 31:395-401. Abstract
Jardim C, Macedo D, Figueira I, Dobson G, McDougall GJ, Stewart D, Ferreira RB, Menezes R, Santos CN.  2017.  (Poly)phenol metabolites from Arbutus unedo leaves protect yeast from oxidative injury by activation of antioxidant and protein clearance pathways. Journal of Functional Foods. 32:333-346.
Macedo D, Jardim C, Figueira I, Almeida AF, McDougall GJ, Stewart D, Yuste JE, Tomás-Barberán FA, Tenreiro S, Outeiro TF et al..  2018.  (Poly)phenol-digested metabolites modulate alpha-synuclein toxicity by regulating proteostasis. Scientific Reports. 8:ArticleNo.6965..
Bouwman FG, de Roos B, Rubio-Aliaga I, Crosley LK, Duthie SJ, Mayer CD, Horgan GW, Polley AC, Heim C, Coort SLM et al..  2011.  2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting. BMC Medical Genomics. 4
Johnson SN, Clark KE, Hartley SE, Jones TH, McKenzie SW, Koricheva J.  2012.  Aboveground-belowground herbivore interactions: a meta-analysis. Ecology. 93:2208-2215.
Vinichuk M, Taylor AFS, Rosen K, Johanson KJ.  2010.  Accumulation of potassium, rubidium and caesium (133Cs and 137Cs) in various fractions of soil and fungi in a Swedish forest. The Science of the Total Environment. 408:2543-2548.
Hill PW, Quilliam RS, DeLuca TH, Farrar J, Farrell M, Roberts P, Newsham KK, Hopkins DW, Bardgett RD, Jones DL.  2011.  Acquisition and assimilation of nitrogen as peptide-bound and D-enantiomers of amino acids by wheat. PLoS ONE. 6:e19220.
Palomares-Rius JE, Jones JT, Cock PJ, Castillo P, Blok VC.  2013.  Activation of hatching in diapaused and quiescent Globodera pallida. Parasitology. 140:445-454.
Hopkins M, Duarte C, Beaulieu K, Finlayson G, Gibbons C, Johnstone AM, Whybrow S, Horgan GW, Blundell JE, Stubbs RJ.  2019.  Activity energy expenditure is an independent predictor of energy intake in humans. International Journal of Obesity. 43:1466-1474.
Ruiz-Ramos M, Ferrise R, Rodriguez A, Lorite IJ, Bindi M, Carter TR, Fronzek S, Palosuo T, Pirttioja N, Baranowski P et al..  2017.  Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. Published online..
Ruiz-Ramos M, Ferrise R, Rodriguez A, Lorite IJ, Bindi M, Carter TR, Fronzek S, Palosuo T, Pirttioja N, Baranowski P et al..  2018.  Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment. Agricultural Systems. 159:260-274.
Pearce ISK, Britton AJ, Armitage HF, Jones B.  2010.  Additive impacts of nitrogen deposition and grazing on a mountain moss-sedge heath. Botanica Helvetica.. 120(2):129-137.
Pettorelli N, Evans DM, Garner TWJ, Katzner T, Gompper ME, Altwegg R, Branch TA, Johnson JA, Acevedo-Whitehouse K, DaVolls L et al..  2013.  Addressing gender imbalances in animal conservation. Animal Conservation. 16:131-133.
Russell JR, Kadu CAC, Jamnadass R, Booth A, Cordeiro NJ, Woodhead M, Dawson IK.  2009.  AFLP and SSR diversity in the African fruit tree Allanblackia: implications for management of a genus newly subject to domestication for the edible oil industry. Tree Genetics and Genomes. 5:517-527.
Gotts NM, van Voorn GAK, Polhill JG, de Jong E, Edmonds B, Hofstede GJ, Meyer R.  2019.  Agent-based modelling of socio-ecological systems: Models, projects and ontologies. Ecological Complexity. 40:ArticleNo.100728.
McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G et al..  2013.  Agriculture: Feeding the future. Nature. 499:23-24.
Jouet A, Saunders DGO, McMullan M, Ward B, Furzer O, Jupe F, Cevik V, Hein I, Thilliez GJA, Holub E et al..  In Press.  Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field. New Phytologist. Published online..
Jouet A, Saunders DGO, McMullan M, Ward B, Furzer O, Jupe F, Cevik V, Hein I, Thilliez GJA, Holub E et al..  2019.  Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field. New Phytologist. 221:1529-1543.
Jia Y, Burbidge C, Sweetman C, Schultz E, Soole E, Jenkins C, Hancock RD, Bruning JB, Ford CM.  2019.  An aldo-keto reductase with 2-keto-l-gulonate reductase activity functions in l-tartaric acid biosynthesis from vitamin C in Vitis vinifera. Journal of Biological Chemistry. 294:15932-15946.
Speck JJ, James EK, Sugawara M, Sadowsky MJ, Gyaneshwar P.  2019.  An alkane sulfonate monooxygenase is required for symbiotic nitrogen fixation by Bradyrhizobium diazefficiens (syn. Bradyrhizobium japonicum) USDA110(T). Applied and Environmental Microbiology. 85:ArticleNo.e01552-19.
Simpson CG, Lewandowska D, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol JW, Raczynska D, Jarmolowski A, Barta A et al..  2008.  Alternative splicing in plants. Biochemical Society Transactions. 36:508-510.
James A, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JWS, Nimmo HG.  2012.  Alternative splicing mediates responses of the Arabidopsis thaliana circadian clock to temperature changes. The Plant Cell. 24:961-981.
Fanelli E, Di Vito M, Jones JT, De Giorgi C.  2005.  Analysis of chitin synthase function in a plant parasitic nematode, Meloidogyne artiellia, using RNAi. Gene. 349:87-95. Abstract
Furlanetto C, Cardle L, Brown DJF, Jones JT.  2005.  Analysis of Expressed Sequence Tags from the ectoparasitic nematode Xiphinema index. Nematology. 7:95-104. Abstract
Srinivasan DG, Fenton B, Jaubert-Possamai S, Jaouannet M.  2010.  Analysis of meiosis and cell cycle genes of the facultatively asexual pea aphid, Acyrthosiphon pisum (Hemiptera: Aphididae). Insect Molecular Biology. 19 Supplement s2:229-239.
Scotti I, Burelli A, Cattonaro F, Chagne D, Fuller J, Hedley PE, Jansson G, Lalanne C, Madur D, Neale D et al..  2005.  Analysis of the distribution of marker classes in a genetic linkage map: A case study in Norway Spruce (Picea.abies Karst). Tree Genetics and Genomes. 1:93-102. Abstract
Weise DR, Palarea-Albaladejo J, Johnson TJ, Jung HJ.  2020.  Analyzing wildland fire smoke emissions data using compositional data techniques. Journal of Geophysical Research Atmospheres. 125:ArticleNo.e2019JD032128.
Sarkies P, Selkirk ME, Jones JT, Blok VC, Boothby T, Goldstein B, Hanelt B, Ardila-Garcia A, Fast NM, Schiffer PM et al..  2015.  Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages. PLoS Biology. 13:e1002061.
Jiang RHY, Tyler BM, Whisson SC, Hardham AR, Govers F.  2006.  Ancient origin of elicitin gene clusters in Phytophthora genomes. Molecular Biology and Evolution. 23:338-351. Abstract
Hentley WT, Vanbergen AJ, Beckerman AP, Brien MN, Hails RS, Jones TH, Johnson SN.  2016.  Antagonistic interactions between an invasive alien and a native coccinellid species may promote coexistence. Journal of Animal Ecology. 85:1087-1097.
Reed MS, Hubacek K, Bonn A, Burt TP, Holden J, Stringer LC, Beharry-Borg N, Buckmaster S, Chapman D, Chapman PJ et al..  2013.  Anticipating and managing future trade-offs and complementarities between ecosystem services. Ecology and Society, 18, 5..
Neacsu M, Fyfe C, Horgan G, Johnstone AM.  2014.  Appetite control and biomarkers of satiety with vegetarian (soy) and meat-based high-protein diets for weight loss in obese men: a randomized crossover trial. American Journal of Clinical Nutrition. 100:548-558.
Teodoro M, Trakal L, Gallagher BN, Simek P, Soudek P, Poherely M, Beesley L, Jacka L, Kovar M, Seyedsadr S et al..  2020.  Application of co-composted biochar significantly improved plant-growth relevant physical/chemical properties of a metal contaminated soil. Chemosphere. 242:ArticleNo.UNSP125255.
Vinten AJA, Martin-Ortega J, Glenk K, Booth P, Balana BB, MacLeod M, Lago M, Moran D, Jones M.  2012.  Application of the WFD cost proportionality principle to diffuse pollution mitigation: a case study for Scottish Lochs. Journal of Environmental Management. 97:28-37.
Jones HG, Hillis RM, Gordon SL, Brennan RM.  2013.  An approach to the determination of winter chill requirements for different Ribes cultivars. Plant Biology. 15:18-27.
Babikova Z, Gilbert L, Bruce TJA, Dewhirst S, Pickett JA, Johnson D.  2014.  Arbuscular mycorrhizal fungi and aphids interact by changing host plant quality and volatile emission. Functional Ecology. 28:375-385.
Jiang F, Zhang L, Zhou J, George TS, Feng G.  2021.  Arbuscular mycorrhizal fungi enhance mineralisation of organic phosphorus by carrying bacteria along their extraradical hyphae. New Phytologist. 230:304-315.
Rosling A, Cox F, Cruz-Martinez K, Ihrmark K, Grelet GA, Lindahl BD, Menkis A, James TY.  2011.  Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science. 333:876-879.
Jackson-Blake LA, Sample JE, Wade AJ, Helliwell RC, Skeffington RA.  2017.  Are our dynamic water quality models too complex? A comparison of a new parsimonious phosphorus model, SimplyP, and INCA-P Water Resources Research. 53:5382-5399.
Mitchell C, Brennan RM, Cross JV, Johnson SN.  2011.  Arthropod pests of currant and gooseberry crops in the UK: their biology, management and future prospects. Agricultural and Forest Entomology. 13:221-237.
Walker PG, Viola R, Woodhead M, Jorgensen L, Gordon SL, Brennan RM, Hancock RD.  2010.  Ascorbic acid content of blackcurrant fruit is influenced by both genetic and enviromental factors. Functional Plant Science and Biotechnology. 4:40-52.
Helliwell RC, Wright RF, Jackson-Blake LA, Ferrier RC, Aherne J, Cosby BJL, Evans CD, Forsius M, Hruska J, Jenkins A et al..  2014.  Assessing recovery from acidification of European surface waters in the year 2010: evaluation of projections made with the MAGIC model in 1995. Environmental Science and Technology. 48:13280-13288.
McDougall GJ, Martinussen I, Junttila O, Verrall SR, Stewart D.  2011.  Assessing the influence of genotype and temperature on polyphenol composition in cloudberry (Rubus chamaemorus L) using a novel mass spectrometric method. Journal of Agricultural and Food Chemistry. 59:10860-10868.
Smart SM, Jarvis SG, Mizunuma T, Herrero-Jauregui C, Fang Z, Butler A, Alison J, Wilson M, Marrs RH.  2019.  Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts. Ecology and Evolution. 9:12858-12868.
Lazar A, Butterfield D, Futter MN, Rankinen K, Thouvenot-Korpoo M, Jarrit N, Lawrence DSL, Wade AJ, Whitehead PG.  2010.  An assessment of the fine sediment dynamics in an upland river system: INCA-Sed modifications and implications for fisheries. The Science of the Total Environment. 408(12):2555-2566.
Zak D, Stutter MI, Jensen HS, Egemose S, Carstensen MV, Audet J, Strand JA, Feuerbach P, Hoffmann CC, Christen B et al..  2019.  An assessment of the multifunctionality of integrated buffer zones in Northwestern Europe. Journal of Environmental Quality. 48:362-375.
Vinten AJA, Loades K, Addy S, Richards S, Stutter MI, Cook Y, Watson H, Taylor C, Abel C, Baggaley N et al..  2014.  Assessment of the use of sediment fences for control of erosion and sediment phosphorus loss after potato harvesting on sloping land. Science of the Total Environment. 468-469:1234-1244.
Melandri G, Prashar A, McCouch SR, van der Linden G, Jones HG, Kadam N, Jagadish K, Bouwmeester H, Ruyter-Spira C.  2020.  Association mapping and genetic dissection of drought-induced canopy temperature differences in rice. Journal of Experimental Botany. 71:1614-1627.
Johnston SL, Souter DM, Erwin SS, Tolkamp BJ, Yearsley JM, Gordon IJ, Illius AW, Kyriazakis I, Speakman JR.  2007.  Associations between basal metabolic rate and reproductive performance in C57BL/6J mice. Journal of Experimental Biology. 210(1):65-74.
Wilcox KR, Tredennick AT, Koerner SE, Grman E, Hallett LM, Avolio ML, La Pierre KJ, Houseman GR, Isbell F, Johnson DS et al..  2017.  Asynchrony among local communities stabilises ecosystem function of metacommunities. Ecology Letters. 20:1534-1545.
Tipping E, Benham S, Boyle JF, Crow P, Davies J, Fischer U, Guyatt H, Helliwell RC, Jackson-Blake L, Lawlor AJ et al..  2014.  Atmospheric deposition of phosphorus to land and freshwater. Environmental Science: Processes and Impacts. 16:1608-1617.
Zhang RX, Calixto CPG, Tzioutziou NA, James AB, Simpson CG, Guo WB, Marquez Y, Kalyna M, Patro R, Eyras E et al..  2015.  AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist. 208:96-101.
Johnson SN, Gregory PJ, Greenham JR, Zhang X, Murray PJ.  2005.  Attractive properties of an isoflavonoid found in white clover root nodules on the clover root weevil. Journal of Chemical Ecology. 31:2223-2229. Abstract
Pettitt TR, Keane GJ, John SOL, Cooke DEL, Zerjav M.  2019.  Atypical late blight symptoms following first recorded infections by Phytophthora infestans genotype EU_39_A1 in UK vine tomatoes. New Disease Reports. 39:ArticleNo.16.
Jordan MO, Wendler R, Millard P.  2012.  Autumnal N storage determines the spring growth, N uptake and N internal cycling of young peach trees. Trees - Structure and Function. 26:393-404.
Chen MH, Sheu SY, James EK, Young CC, Chen WM.  2013.  Azoarcus olearius sp.nov., a nitrogen-fixing bacterium isolated from oil-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. 63:3755-3761.
Karunakaran R, Haag AF, East AK, Ramachandran VK, Prell J, James EK, Scocchi M, Ferguson GP, Poole PS.  2010.  BacA is essential for bacteroid development in nodules of galegoid, but not phaseoloid, legumes. Journal of Bacteriology. 192:2920-2928.
Dudnik A, Almeida AF, Andrade R, Avila B, Banados P, Bassard JE, Benkoulouche M, Bott M, Braga A, Breitel D et al..  2018.  BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
Johnson SN, Hallett PD, Gillespie TL, Halpin C.  2010.  Below-ground herbivory and root toughness: a potential model system using lignin-modified tobacco. Physiological Entomology. 35:186-191. Abstract
Biurrun I, Pielech R, Dembicz I, Gillet F, Kozub L, Marcenò C, Reitalu T, van Meerbeek K, Guarino R, Chytrý M et al..  2021.  Benchmarking plant diversity of Palaearctic grasslands and other open habitats. Journal of Vegetation Science. 32:ArticleNo.e13050.
Lane RA, Coxon G, Freer JE, Wagener T, Johnes PJ, Bloomfield JP, Greene S, Macleod CJA, Reaney SM.  2019.  Benchmarking the predictive capability of hydrological models for river flow and flood peak predictions across a large sample of catchments in Britain. Hydrology and Earth System Sciences. 23:4011-4032.
Reis VM, Alves BJR, Hartmann A, James EK, Zilli JE.  2020.  Beneficial microorganisms in agriculture: the future of plant growth-promoting rhizobacteria. Plant and Soil. 451:1-3.
Banwart S, Black HIJ, Cai ZC, Gicheru P, Joosten H, Victoria R, Milne E, Noellemeyer E, Pascual U, Nziguheba G et al..  2014.  Benefits of soil carbon: report on the outcomes of an international scientific committee on problems of the environment rapid assessment workshop. Carbon Management. 5:185-192.
Hannam KD, Kehila D, Millard P, Midwood AJ, Neilsen D, Neilsen GH, Forge TA, Nichol C, Jones MD.  2016.  Bicarbonates in irrigation water contribute to carbonate formation and CO2 production in orchard soils under drip irrigation. Geoderma. 266:120-126.
Jamieson AJ, Malkocs T, Piertney SB, Fujii T, Zhang ZL.  2017.  Bioaccumulation of persistent organic pollutants in the deepest ocean fauna. Nature Ecology and Evolution. 1:ArticleNo.0051.
Primack RB, Miller-Rushing AJ, Corlett RT, Devictor V, Johns DM, Loyola R, Maas B, Pakeman RJ, Pejchar L.  2018.  Biodiversity gains? The debate on changes in local- vs global-scale species richness Biological Conservation. 219:A1-A3.
Evans DM, Altwegg R, Garner TWJ, Gompper ME, Gordon IJ, Johnson JA, Pettorelli N.  2015.  Biodiversity offsetting: what are the challenges, opportunities and research priorities for animal conservation? Animal Conservation. 18:1-3.
Lemaire B, Chimphango S, Stirton C, Rafundeen S, Honnay O, Smets E, Chen WM, Sprent JI, James EK, Muasya AM.  2016.  Biogeographical patterns of legume-nodulating Burkholderia spp.: from African Fynbos to continental scales. Applied and Environmental Microbiology. 82:5099-5115.
Sprent JI, Ardley J, James EK.  2017.  Biogeography of nodulated legumes and their nitrogen fixing symbionts - Tansley review. New Phytologist. 215:40-56.
Hopkins M, Finlayson G, Duarte C, Gibbons C, Johnstone AM, Whybrow S, Horgan GW, Blundell JE, Stubbs RJ.  2019.  Biological and psychological mediators of the relationships between fat mass, fat-free mass and energy intake. International Journal of Obesity. 43:233-242.
Menezes R, Foito A, Jardim C, Costa I, Garcia G, Rosado-Ramos R, Freitag S, Alexander CJ, Outeiro TF, Stewart D et al..  2020.  Bioprospection of natural sources of polyphenols with therapeutic potential for redox-related diseases. Antioxidants. 9:ArticleNo.789.
Chen WM, Prell J, James EK, Sheu D, Sheu S.  2012.  Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica. Microbiology. 158:1758-1766.
Figueira I, Tavares L, Jardim C, Costa I, Terrasso AP, Almeida AF, Govers CCFM, Mes JJ, Gardner R, Becker JD et al..  2019.  Blood-brain barrier permeability and neuroprotective potential of blackberry-digested polyphenols. European Journal of Nutrition. 58:113-130.
Silva VC, Alves PAC, Rhem MFK, dos Santos JMF, James EK, Gross E.  2018.  Brazilian species of Calliandra Benth. (tribe Ingeae) are nodulated by diverse strains of Paraburkholderia. Systematic and Applied Microbiology. 41:241-250.
Kumar PL, Latha TKS, Kulkarni NK, Raghavendra N, Saxena KB, Waliyar F, Rangaswamy KT, Muniyappa V, Doriswamy S, Jones AT.  2005.  Broad-based resistance to pigeonpea sterility mosaic disease in wild relatives of pigeonpea (Cajanus: Phaseoleae). Annals of Applied Biology. 146:371-379. Abstract
Pacak A, Strozycki PM, Barciszewska-Pacak M, Alejska M, Lacomme C, Jarmolowski A, Szweykowska-Kulinska Z, Figlerowicz M.  2010.  The brome mosaic virus-based recombination vector triggers a limited gene silencing response depending on the orientation of the inserted sequence. Archives of Virology. 155:169-179.
Plue J, Van Calster H, Auestad I, Basto S, Bekker RM, Bruun HH, Chevalier R, Decocq G, Grandin U, Hermy M et al..  2021.  Buffering effects of seed banks on plant community diversity in response to land use and climate. Global Ecology and Biogeography. 30:128-139.
Breen C, Clegg F, Herron MM, Hild GP, Hillier S, Hughes TL, Jones TGJ, Matteson A, Yarwood J.  2008.  Bulk mineralogical characterisation of oilfield reservoir rocks and sandstones using diffuse reflectance infrared fourier transform spectroscopy and partial least squares analysis. Journal of Petroleum Science and Engineering. 60(1):1-17.
Liu XY, Wei S, Wang F, James EK, Zagar C, Wang YP, Dong X, Hui T, Xia LG.  2012.  Burkholderia and Cupriavidus spp. are the preferred symbionts of Mimosa spp. in Southern China. FEMS Microbiology Ecology. 80:417-426.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, dos Reis Jr FB, Melkonian RJ, Moulin L, James EK, Sprent JI et al..  2013.  Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. International Journal of Systematic and Applied Microbiology. 63:435-441.
Sheu SY, Chen MH, Liu WYY, Andrews M, James EK, Ardley JK, De Meyer SE, James TK, Howieson JG, Coutinho BG et al..  2015.  Burkholderia dipogonis sp. Nov., isolated from root nodules of Dipogon lignosus in New Zealand and Western Australia. International Journal of Systematic and Evolutionary Microbiology. 65:4716-4723.
Chen WM, de Faria SM, Chou JH, James EK, Elliott GN, Sprent JI, Bontemps C, Young JPW, Vandamme P.  2008.  Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia. International Journal of Systematic and Evolutionary Microbiology. 58(9):2174-2179.
Liu WYY, Ridgway HJ, James TK, James EK, Chen WM, Sprent JI, Young JPW, Andrews M.  2014.  Burkholderia sp. induces functional nodules on the South African invasive legume Dipogon lignosus (Phaseoleae) in New Zealand soils. Microbial Ecology. 68:542-555.
Bontemps C, Elliott GN, Simon MF, Dos Reis J FB, Gross E, Lawton RC, Neto NE, Loureiro MdeF, de Faria SM, Sprent JI et al..  2010.  Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
Bontemps C, Elliott GN, Simon MF, dos, Reis J, F.B, Gross E, Neto NE, de Loureiro MF, de Faria SM, Sprent JI et al..  2010.  Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19(1):44-52.
Bournaud C, de Faria S, Santos JMF, Tisseyre P, Silva M, Chaintreuil C, Gross E, James EK, Prin Y, Moulin L.  2013.  Burkholderia species are the most common and preferred nodulating symbionts of the Piptadenia group (Tribe Mimoseae). PLoS ONE. 8:e63478.
Elliott GN, Chou JH, Chen WM, Bloemberg GV, Bontemps C, Martinez-Romero E, Velazquez E, Young JPW, Sprent JI, James EK.  2009.  Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environmental Microbiology. 11(4):762-778.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, James EK, Sprent JI, Young JPW, Chen WM.  2012.  Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
Jones JT, Moens M, Mota M, Li HM, Kikuchi T.  2008.  Bursaphelenchus xylophilus: opportunities in comparative genomics and molecular host-parasite interactions (Review). Molecular Plant Pathology. 9:357-368. Abstract
Quilliam RS, van Niekerk MA, Chadwick DR, Cross P, Hanley N, Jones DL, Vinten AJA, Olivers DM.  2015.  Can macrophyte harvesting from eutrophic water close the loop on nutrient loss from agricultural land? Journal of Environmental Management. 152:210-217.
Dietrich RC, Bengough AG, Jones HG, White PJ.  2013.  Can root electrical capacitance be used to predict root mass in soil? Annals of Botany. 112:457-464.
Jones HG.  2010.  Can water droplets on leaves cause leaft scorch? New Phytologist. 185:865-867.
Hedley PE, Russell JR, Jorgensen L, Gordon S, Morris JA, Hackett CA, Cardle L, Brennan RM.  2010.  Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.). BMC Plant Biology. 10:-202.
Dunn SM, Johnston L, Taylor C, Watson H, Cook Y, Langan SJ.  2013.  Capability and limitations of a simple grid-based model for simulating land use influences on stream nitrate concentrations. Journal of Hydrology. 507:110-123.
Bradford MA, Tordoff GM, Black HIJ, Cook R, Eggers T, Garnett MH, Grayston SJ, Hutcheson KA, Ineson P, Newington JE et al..  2007.  Carbon dynamics in a model grassland with functionally different soil communities. Functional Ecology. 21(4):690-697.
Hewett CJM, Wilkinson ME, Jonczyk J, Quinn PF.  2020.  Catchment systems engineering: an holistic approach to catchment management. WIRESs Water. :ArticleNo.e1417.
Eaton SL, Anderson MJ, Hamilton S, Gonz L, Sales J, Jeffrey M, Reid HW, Rocchi MA, Chianini F.  2009.  CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.
Logie L, Harthill J, Patel K, Bacon S, Hamilton DL, Macrae K, McDougall GJ, Wang HH, Xue L, Jiang H et al..  2012.  Cellular responses to the metal-binding properties of metformin. Diabetes. 61:1423-1433.
Katzner T, Johnson JA, Evans DM, Garner TWJ, Gompper ME, Altwegg R, Branch TA, Gordon IJ, Pettorelli N.  2013.  Challenges and opportunities for animal conservation from renewable energy development. Animal Conservation. 16:367-369.
Bol R, Gruau G, Mellander PE, Dupas R, Bechmann M, Skarbøvik E, Bieroza M, Djodjic F, Glendell M, Jordan P et al..  2018.  Challenges of reducing phosphorus based water eutrophication in the agricultural landscapes of Northwest Europe. Frontiers in Marine Science. 5:ArticleNo.276.
Jeong GY, Hillier S, Kemp RA.  2011.  Changes in mineralogy of loess-paleosol sections across the Chinese Loess Plateau. Quaternary Research. 75:245-255.
Woodhall JW, Lees AK, Edwards SG, Jenkinson P.  2007.  Characterisation of Rhizoctonia solani from potato in Great Britain. Plant Pathology. 56:286-295. Abstract
Adam MAM, Phillips MS, Jones JT, Blok VC.  2008.  Characterisation of the cellulose binding protein Mj-cbp-1 of the root knot nematode, Meloidogyne javanica. Physiological and Molecular Plant Pathology. 72:21-28. Abstract
Kikuchi T, Cock PJA, Helder J, Jones JT.  2014.  Characterisation of the transcriptome of Aphelenchoides besseyi and identification of a GHF 45 cellulase. Nematology. 16:99-107.
Nuopponen M, Wikberg HI, Birch GM, J A-S, Maunu SL, Vuorinen T, Stewart D.  2006.  Characterization of 25 tropical hardwoods with Fourier transform infrared,ultraviolet resonance Raman and 13C cross-polarisation magic-angle spinning NMR spectroscopy. Journal of Applied Polymer Science. 102:810-819. Abstract
Lemaire B, Van Cauwenberghe J, Verstraete B, Chimphango S, Stirton C, Honnay O, Smets E, Sprent JI, James EK, Muasya AM.  2016.  Characterization of the papilionoid-Burkholderia interaction in the Fynbos biome: the diversity and distribution of beta-rhizobia nodulating Podalyria calyptrata (Fabaceae, Podalyrieae). Systematic and Applied Microbiology. 39:41-48.
Pidou M, Memon FA, Avery LM, Parsons SA, Liu S, Stephenson T, Jeffrey P, Jefferson B.  2008.  Chemical solutions for grey water recycling. Chemosphere. 71:147-155.
Johnson SN, Gregory PJ.  2006.  Chemically mediated host-plant location and selection by root-feeding insects. Physiological Entomology. 31:1-13. Abstract
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2007.  Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 152:1767-1774.
Sunley RJ, Atkinson CJ, Jones HG.  2006.  Chill unit models and recent changes in the occurrence of winter chill and spring frost in the United Kingdom. Journal of Horticultural Science & Biotechnology. 81:949-958. Abstract
Jones HG, Gordon SL, Brennan RM.  2015.  Chilling requirement of Ribes cultivars. Frontiers in Plant Science. 5
Volk H, Marton K, Flajsman M, Radisek S, Tian H, Hein I, Podlipnik C, Thomma BPHJ, Kosmelj K, Javornik B et al..  2019.  Chitin-binding protein of verticillium nonalfalfae disguises fungus from plant chitinases and suppresses chitin-triggered host immunity. Molecular Plant Microbe Interactions. 32:1378-1390.
Winward GP, Avery LM, Stephenson T, Jefferson B.  2008.  Chlorine disinfection of greywater for reuse: effect of organics and particles. Water Research. 42(1-2):483-491.
Chapman JA, Mascher M, Buluc A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Seghal S, Oliker L et al..  2015.  Chromosome-scale assembly of the hexaploid wheat genome from whole genome shotgun sequencing. Genome Biology. 16
Fronzek S, Pirttioja N, Carter TR, Bindi M, Hoffmann H, Palosuo T, Ruiz-Ramos M, Tao F, Trnka M, Acutis M et al..  2018.  Classifying multi-model wheat yield impact response surfaces showing sensitivity to temperature and precipitation change. Agricultural Systems. 159:209-224.
Dawson IK, Vinceti B, Weber JC, Neufeldt H, Russell JR, Lengkeek AG, Kalinganire A, Kindt R, Lilles JPB, Roshetko J et al..  2011.  Climate change and tree genetic resource management: maintaining and enhancing the productivity and value of smallholder tropical agroforestry landscapes (Review). Agroforestry Systems. 81:67-78.
Asseng S, Martre P, Maiorano A, Rotter RP, O'Leary GJ, Fitzgerald GJ, Girousse C, Motzo R, Giunta F, Babar MA et al..  2019.  Climate change impact and adaptation for wheat protein. Global Change Biology. 25:155-173.
Perez-Espona S, Perez-Barberia FJ, McLeod JE, Jiggins CD, Gordon IJ, Pemberton JM.  2008.  Climbing ev'ry mountain: How do landscape features affect gene exchange among Scottish red deer populations? Deer, The Journal of the British Deer Society. 14:38-41.
Kikuchi T, Shibuya H, Aikawa T, Jones JT.  2006.  Cloning and characterization of pectate lyases expressed in the esophageal gland of the pine wood nematode Bursaphelenchus xylophilus. Molecular Plant-Microbe Interactions. 19:280-287. Abstract
Calixto CPG, Tzioutziou NA, James AB, Hornyik C, Guo WB, Zhang RX, Nimmo HG, Brown JWS.  2019.  Cold-dependent expression and alternative splicing of arabidopsis long non-coding RNAs. Frontiers in Plant Science. 10:ArticleNo.235.
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Mitchell C, Johnson SN, Gordon SC, Birch ANE, Hubbard SF.  2010.  Combining plant resistance and a natural enemy to control Amphorophora idaei. BioControl. 55:321-327.
Innocent GT, Gilbert L, Jones EO, McLeod JE, Gunn G, McKendrick IJ, Albon SD.  2017.  Combining slaughterhouse surveillance data with cattle tracing scheme and environmental data to quantify environmental risk factors for liver fluke in cattle. Frontiers in Veterinary Science. 4:ArticleNo.65.
Suarez-Moreno ZR, Caballero-Mellado J, Coutinho BG, Mendonca-Previato L, James EK, Venturi V.  2012.  Common features of environmental and potentially beneficial plant-associated Burkholderia. Microbial Ecology. 63:249-266.
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Moing A, Allwood JW, Aharoni A, Baker J, Beale MH, Ben-Dor S, Biais B, Brigante F, Burger Y, Deborde C et al..  2020.  Comparative metabolomics and molecular phylogenetics of melon (Cucumis melo, Cucurbitaceae) biodiversity. Metabolites. 10
Iannetta PPM, Young M, Bachinger J, Bergkvist G, Lopez-Bellido RJ, Monti M, Pappa VA, Reckling M, Topp CFE, Walker RL et al..  2016.  A comparative nitrogen balance and productivity analysis of legume and non-legume supported cropping systems: the potential role of biological nitrogen fixation. Frontiers in Plant Science. 7:ArticleNo.1700..
Kenyon F, McBean D, Greer AW, Burgess CGS, Morrison AA, Bartley DJ, Bartley Y, Devin L, Nath M, Jackson F.  2013.  A comparative study of the effects of four treatment regimes on ivermectin efficacy, body weight and pasture contamination in lambs naturally infected with gastrointestinal nematodes in Scotland. International Journal for Parasitology - Drugs and Drug Resistance. 3:77-84.
Duan YF, Duan SG, Armstrong MR, Xu JF, Zheng HJYJ, Chen XW, Hein I, Li GC, Jin LP.  2020.  Comparative transcriptome profiling reveals compatible and incompatible patterns of potato toward phytophthora infestans. G3- Genes Genomes Gemnetics. 10:623-634.
Robinson DT, Brown DG, Parker DC, Schreinemachers P, Janssen MA, Huigen M, Wittmer H, Gotts NM, Promburom P, Irwin E et al..  2007.  Comparison of empirical methods for building agent-based models in land use science. Journal of Land Use Science. 2(1):31-55.
Palomares-Rius JE, Hedley PE, Cock PJA, Morris JA, Jones JT, Vovlas N, Blok V.  2012.  Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. Molecular Plant Pathology. 13:1120-1134.
Burchill W, James EK, Li D, Lanigan GJ, Williams M, Iannetta PPM, Humphreys J.  2014.  Comparisons of biological nitrogen fixation in association with white clover (Trifolium repens L.) under four fertiliser nitrogen inputs as measured using two 15N techniques. Plant and Soil. 385:287-302.
Moulin L, Klonowska A, Bournaud C, Booth K, Vriezen JAC, Melkonian R, James EK, Young JPW, Bena G, Hauser L et al..  2014.  Complete genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. Standards in Genomic Sciences. 9
Lin H, Jin DF, Freitag TE, Sun WC, Yu QG, Fu JR, Ma JW.  2016.  A compositional shift in the soil microbiome induced by tetracycline, sulfamonomethoxine and ciprofloxacin entering a plant-soil system. Environmental Pollution. 212:440-448.
Jones MR, Leith ID, Fowler D, Raven JA, Sutton MA, Nemitz E, Cape JN, Sheppard LJ, Smith RI, Theobold MR.  2007.  Concentration-dependent NH3 deposition processes for mixed moorland semi-natural vegetation. Atmospheric Environment. 41:2049-2060. Abstract
Jones MR, Leith ID, Fowler D, Raven JA, Sutton MA, Nemitz E, Cape JN, Sheppard LJ, Smith RI.  2007.  Concentration-dependent NH3 deposition processes for stomatal and non-stomatal moorland species. Atmospheric Environment. 41:8990-8994. Abstract
Jackson G, Macdonald LM, Brewer MJ, Dawson LA.  2012.  A conceptual framework for expert opinions in forensic geoscience. Science and Justice.
Eastwood A, Juárez-Bourke A, Herrett S, Hague A.  2021.  Connecting young people with greenspaces: the case for participatory video. People and Nature. Published online..
Vanbergen AJ, Jones TH, Halls RS, Watt AD, Elston DA.  2007.  Consequences for a host-parasitoid interaction of host-plant aggregation, isolation and phenology. Ecological Entomology. 32:419-427. Abstract
Evans KL, Ewen JG, Guillera-Arroita G, Johnson JA, Penteriani V, Ryan SJ, Sollmann R, Gordon IJ.  2020.  Conservation in the maelstrom of Covid-19-a call to action to solve the challenges, exploit opportunities and prepare for the next pandemic. Animal Conservation. 23:235-238.
Avery LM, Frazer-Williams RAD, Winward G, Jeffrey P, Shirley-Smith C, Liu S, Memon FA, Jefferson B.  2008.  Constructed wetlands for grey water treatment. Ecohydrology and Hydrobiology. 7(3-4):191-200.
Frazer-Williams RAD, Avery LM, Winward G, Jeffrey P, Shirley-Smith C, Liu S, Jefferson B.  2008.  Constructed wetlands for urban grey water recycling. International Journal of Environmental Pollution. 33(1):93-109.
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Jackson-Blake LA, Helliwell RC, Britton A, Gibbs S, Coull MC, Dawson LA.  2012.  Controls on soil solution nitrogen along an altitudinal gradient in the Scottish uplands. Science of the Total Environment. 431:100-108.
Shu-Yi-Dan Z, Huang F-YH, Xin-Yuan Z, Chenshuo L, Ming-Kang J, Neilson R, Li HL, Jian-Qiang S.  2022.  Conurbation size drives antibiotic resistance along the river. Science of the Total Environment.
Obidiegwu JE, Bryan GJ, Jones HG, Prashar A.  2015.  Coping with drought: stress and adaptive responses in potato and perspectives for improvement. Frontiers in Plant Science. 6:ArticleNo.542.
Crozier L, Hedley PE, Morris J, Wagstaff C, Andrews SC, Toth I, Jackson RW, Holden N.  2016.  Corrigendum: whole-transcriptome analysis of verocytotoxigenic Escherichia coli O157:H7 (Sakai) suggests plant-species-specific metabolic responses on exposure to spinach and lettuce extracts. Frontiers in Microbiology.. 7
Whitehead PG, Crossman J, Balana BB, Futter MN, Comber S, Jin L, Skuras D, Wade AJ, Bowes MJ, Read DS.  2013.  A cost-effectiveness analysis of water security and water quality: impacts of climate and land-use change on the River Thames system. Philosophical Transactions of the Royal Society, Series A. 371:201204B.
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Birch PRJ, Bryan GJ, Fenton B, Gilroy EM, Hein I, Jones JT, Prashar A, Taylor MA, Torrance L, Toth IK.  2012.  Crops that feed the world 8: potato: are the trends of increased global production sustainable? Food Security. 4:477-508.
Fisher DO, Johnson CN, Lawes MJ, Fritz SA, McCallum H, Blomberg SP, van der Wal J, Abbott B, Frank A, Legge S et al..  2014.  The current decline of tropical marsupials in Australia: is history repeating? Global Ecology and Biogeography. 23:181-190.
Cockell CS, L A, Fridlund M, Herbst TM, Kaltenegger L, Absil O, Beichman C, Benz W, Blanc M, Brack A et al..  2009.  Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
Deffuant G, Alvarez I, Barreteau O, de Vries B, Edmonds B, Gilbert N, Gotts N, Jabot F, Janssen S, Hilden M et al..  2012.  Data and models for exploring sustainability of human well-being in global environmental change. European Physical Journal Special Topics.. 214:519-545.
Hudson LN, Newbold T, Contu S, Hill SLL, Lysenko I, De Palma A, Phillips HRR, Alhusseini TI, Bedford FE, Bennett DJ et al..  2017.  The database of the PREDICTS (Projecting Responses of ecological Diversity in Changing Terrestrial Systems). Ecology and Evolution. 7:145-188.
Ganesh Subramanian PS, Raj AV, Jamwal P, Connelly S, Yeluripati J, Richards S, Ellis R, Rao L.  2020.  Decentralized treatment and recycling of greywater from a school in rural India. Journal of Water Process Engineering. 30:ArticleNo.101695.
Atkinson CJ, Brennan RM, Jones HG.  2013.  Declining chilling and its impact on temperate perennial crops. Environmental and Experimental Botany. 91:48-62.
Cortet J, Andersen MN, Caul S, Griffiths BS, Joffre R, Lacroix B, Sausse C, Thompson J, Krogh PH.  2006.  Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract
Deflorio G, Horgan GW, Jaspars M, Woodward S.  2012.  Defence response of Sitka spruce before and after inoculation with Heterobasidion annosum: 1H NMR fingerprinting of bark and sapwood metabolites. Analytical and Bioanalytical Chemistry. 402:3333-3344.
Mitra A, Flynn KJ, Tillmann U, Raven JA, Caron D, Stoecker DK, Not F, Hansen PJ, Hallegraeff G, Sanders R et al..  2016.  Defining planktonic protist functional groups on mechanisms for energy and nutrient acquisition: incorporation of diverse mixotrophic strategies. Protist. 167:106-120.
Young JPW, Moeskjær S, Afonin A, Rahi P, Maluk M, James EK, Cavassim MIA, Rashid M, Aserse AA, Perry BJ et al..  2021.  Defining the rhizobium leguminosarum species complex. Genes. 12:ArticleNo.111.
Valentine TA, Randall E, Wypijewski K, Chapman S, Jones JT, Oparka KJ.  2007.  Delivery of macromolecules to plant parasitic nematodes using a tobacco rattle virus vector. Plant Biotechnology Journal. 5:827-834. Abstract
Wijedasa LS, Jauhiainen J, Kononen M, Lampela M, Vasander H, LeBlanc MC, Evers S, Smith TEL, Yule CM, Varkkey H et al..  2017.  Denial of long-term issues with agriculture on tropical peatlands will have devastating consequences. Global Change Biology. 23:977-982.
Wijedasa LS, Jauhiainen J, Kononen M, Lampela M, Vasander H, LeBlanc MC, Evers S, Smith TEL, Yule CM, Varkkey H et al..  2017.  Denial of long-term issues with agriculture on tropical peatlands will have devastating consequences. Global Change Biology. 23:977-982.
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Correia B, Valledor L, Hancock RD, Jesus C, Amaral J, Meijon M, Pinto G.  2016.  Depicting how Eucalyptus globulus survives drought: involvement of redox and DNA methylation events. Functional Plant Biology. 43:838-850.
Homayoun M, Jalalian A, Besalatpour AA, Basirat A, Aalders IH.  2015.  Determining relationships between soil properties and plant distribution in a protected area in central Iran. Maejo International Journal of Science and Technology. 9:136-146.
Paoletti, M.G, Osler GHR, Kinnear A, Black DG, Thomson LJ, Tsitsilas A, Sharley D, Judd S, Neville P et al..  2007.  Detritivores as indicators of landscape stress and soil degradation. Australian Journal of Experimental Agriculture. 47(4):412-423.
Malolepszy A, Urbanski DF, James EK, Sandal N, Isono E, Stougaard J, Andersen SU.  2015.  The deubiquitinating enzyme AMSH1 is required for rhizobial infection and nodule organogenesis in Lotus japonicus. The Plant Journal. 83:719-731.
McCallum S, Woodhead M, Jorgensen L, Gordon SL, Brennan RM, Graham J, Hackett CA, Rowland LJ, Hancock JF, Olmstead JW et al..  2012.  Developing tools for long term breeding of blueberry germplasm for UK production. International Journal of Fruit Science. 12:294-303.
Martinussen I, Uleberg E, McDougall GJ, Stewart D, Juntilla O.  2010.  Development and quality of cloudberry (Rubus chamaemorus L) as affected by female parent, male parent and temperature. Journal of Berry Research. 1:91-101.
Aitkenhead MJ, Albanito F, Jones MB, Black HIJ.  2011.  Development and testing of a process-based soil model (MOSES) for ecosystem services. Ecological Modelling. 222:3795-3810.
Cullen DW, Squire GR, McNicol JW, Jacobs JH, Osborne JL, Ford L, Ramsay G, Scrimgeour CM, Young MW.  2008.  Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape. Journal of the Science of Food and Agriculture. 88:2253-2264. Abstract
de Jesus Colwell F, Souter J, Bryan GJ, Compton LJ, Boonham N, Prashar A.  2021.  Development and validation of methodology for estimating potato canopy structure for field crop phenotyping and improved breeding. Frontiers in Plant Science. 12:ArticleNo.612843.
Phillips D, Nibau C, Ramsay L, Waugh R, Jenkins G.  2010.  Development of a molecular cytogenetic recombination assay for barley. Cytogenetic and Genome Research. 129:154-161.
Brennan RM, Jorgensen L, Gordon SL, Loades K, Hackett CA, Russell JR.  2009.  The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae). Theoretical and Applied Genetics. 118:205-211. Abstract
Jude SR, Jones AP, Watkinson AR, Brown I, Gill JA.  2007.  The development of a visualization methodology for integrated coastal management. Coastal Management. 35(5):525-544.
Moloney C, Griffin D, Jones PW, Bryan GJ, McLean K, Bradshaw JE, Milbourne D.  2010.  Development of diagnostic markers for use in breeding potatoes resistance to Globodera pallida pathotype Pa2/3 using germplasm derived from Solanum tuberosum ssp. andigena CPC 2802. Theoretical and Applied Genetics. 120:679-689.
Holtrop G, Johnstone AM, Fyfe C, Gratz SW.  2012.  Diet composition is associated with endogenous formation of n-nitroso compounds in obese men. Journal of Nutrition. 142:1652-1658.
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Broadley MR, Chilimba ADC, Joy EJM, Young SD, Black CR, Ander EL, Watts MJ, Hurst R, Fairweather-Tait SJ, White PJ et al..  2012.  Dietary requirements for magnesium but not calcium are likely to be met in Malawi based on national food supply data. International Journal for Vitamin and Nutrition Research. 82:192-199.
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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.