Publications list

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2015

Muller FLL, Chang KC, Lee CL, Chapman SJ. 2015. Effects of temperature, rainfall and conifer felling practices on the surface water chemistry of northern peatlands. Biogeochemistry. 126:343-362.

Barzman M, Barberi P, Birch ANE, Boonekamp P, Dachbrodt-Saaydeh S, Graf B, Hommel B, Jensen JE, Kiss J, Kudsk P et al.. 2015. Eight principles of integrated pest management. Agronomy for Sustainable Development. 35:1199-1215.

Wylie CE, Shaw DJ, Fordyce FM, Lilly A, Pirie S, McGorum BC. 2015. Equine grass sickness in Scotland: a case control study of environmental geochemical risk factors. Equine Veterinary Journal. Published online..

Brown SM, Klaffenbock M, Nevison IM, Lawrence AB. 2015. Evidence for litter differences in play behaviour in pre-weaned pigs. Applied Animal Behaviour Science. 172:17-25.

Brierley JL, Hilton AJ, Wale SJ, Peters JC, Gladders PP, Bradshaw NJ, Ritchie F, MacKenzie K, Lees AK. 2015. Factors affecting the development and control of black dot on potato tubers. Plant Pathology. 64:167-177.

Tamburic B, Evenhuis CR, Suggett DJ, Larkum AWD, Raven JA, Ralph PJ. 2015. Gas transfer controls carbon limitation during biomass production by marine microalgae. Chemsuschem. 8:2727-2736.

Looseley ME, Keith R, Guy D, Barral-Baron G, Thirugnanasambandam A, Harrap D, Werner P, Newton AC. 2015. Genetic mapping of resistance to Rhynchosporium commune and characterisation of early infection in a winter barley mapping population. Euphytica. 203:337-347.

Love AJ, Makarov VV, Sinitsyna OV, Shaw J, Yaminsky IV, Kalinina NO, Taliansky ME. 2015. A genetically modified tobacco mosaic virus that can produce gold nanoparticles from a metal salt precursor. Frontiers in Plant Science. 6

Greene S, Johnes PJ, Bloomfield JP, Reaney SM, Lawley R, Elkhatib Y, Freer J, Odoni N, Macleod CJA, Percy B. 2015. A geospatial framework to support integrated biogeochemical modelling in the United Kingdom. Environmental Modelling and Software. 68:219-232.

Yeluripati JB, del Prado A, Sanz-Cobena A, Rees R, Li C, Chadwick D, Tilston E, Topp CFE, Cardenas L, Ingraham P et al.. 2015. Global Research Alliance Modelling Platform (GRAMP): An open web platform for modelling greenhouse gas emissions from agro-ecosystems. Computers and Electronics in Agriculture. 111:112-120.

Li X, Yeluripati J, Jones EO, Uchida Y, Hatano R. 2015. Hierarchical Bayesian calibration of nitrous oxide (N2O) and nitrogen monoxide (NO) flux module of an agro-ecosystem model: ECOSSE. Ecological Modelling. 316:14-27.

Li X, Ishikura W, Wang CY, Yeluripati JB, Hatano R. 2015. Hierarchical Bayesian model approach for estimating soil CO2 flux: a case study in central Hokkaido, Japan. Soil Science and Plant Nutrition. 61:116-132.

Brown I, Berry P, Everard M, Firbank L, Harrison P, Lundy L, Quine C, Rowan J, Wade R, Watts K. 2015. Identifying robust response options to manage environmental change using an Ecosystem Approach II: a stress-testing case study for the UK. Environmental Science and Policy. 52:74-88.

Lu YL, Song S, Wang RS, Liu ZY, Meng J, Sweetman AJ, Jenkins A, Ferrier RC, Li H, Luo W et al.. 2015. Impacts of soil and water pollution on food safety and health risks in China. Environment International. 77:5-15.

Lukhovitskaya NI, Cowan GH, Vetukuri RR, Tilsner J, Torrance L, Savenkov EI. 2015. Importin-alpha-mediated nucleolar localization of potato mop-top virus TRIPLE GENE BLOCK1 (TGB1) protein facilitates virus systemic movement, whereas TGB1 self-interaction is required for cell-to-cell movement in Nicotiana benthamiana. Plant Physiology. 167:738-752.

Brooker RW, Bennett AE, Cong WF, Daniell TJ, George TS, Hallett PD, Hawes C, Iannetta PPM, Jones HG, Karley AJ et al.. 2015. Improving intercropping: a synthesis of research in agronomy, plant physiology and ecology. New Phytologist. 206:107-117.

Lau MSY, Cowling BJ, Cook AR, Riley S. 2015. Inferring influenza dynamics and control in households. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112:9094-9099.

Farmer JG, Graham MC, Eades LJ, Lilly A, Bacon JR. 2015. Influences upon the lead isotopic composition of organic and mineral horizons in soil profiles from the National Soil Inventory of Scotland (2007-09). Science of the Total Environment. 544:730-743.

Lee AM, Bjorkvoll EM, Hansen BB, Albon SD, Stien A, Saether BE, Engen S, Veiberg V, Loe LE, Grotan V. 2015. An integrated population model for a long-lived ungulate: more efficient data use with Bayesian methods. Oikos. 124:806-816.

Littlewood NA, Nau BS, Pozsgai G, Stockan JA, Stubbs A, Young MR. 2015. Invertebrate species at risk from ash dieback in the UK. Journal of Insect Conservation. 19:75-85.

Morris JL, Leake JR, Stein WE, Berry CM, Marshall JEA, Wellman CH, Milton JA, Hillier S, Mannolini F, Quirk J et al.. 2015. Investigating Devonian trees as geo-engineers of past climates: linking palaeosols to palaeobotany and experimental geobiology. Palaeontology. 58:787-801.

Yu P, Li XX, White PJ, Li CJ. 2015. A large and deep root system underlies high nitrogen-use efficiency in maize production. PLoS ONE. 10:e0126293.

Doull L, Wattegedera SR, Longbottom D, Mwangi D, Nath M, Glass EJ, Entrican G. 2015. Late production of CXCL8 in ruminant oro-nasal turbinate cells in response to Chlamydia abortus infection. Veterinary Immunology and Immunopathology. 168:97-102.

Jurado NV, Tanner AE, Blevins SR, McNair HM, Mayes RW, Lewis RM. 2015. Long-chain alcohols did not improve predictions of the composition of tall fescue and red clover mixtures over n-alkanes alone. Grass and Forage Science. 70:499-506.

Ning P, Li S, White PJ, Li CJ. 2015. Maize varieties released in different eras have similar root length density distributions in the soil, which are negatively correlated with local concentrations of soil mineral nitrogen. PLoS ONE. 10:e0121892.

Kettle H, Louis P, Holtrop G, Duncan SH, Flint HJ. 2015. Modelling the emergent dynamics and major metabolites of the human colonic microbiota. Environmental Microbiology. 17:1615-1630.

Novo P, Dumont A, Willaarts B, Lopez-Gunn E. 2015. More cash and jobs per illegal drop? The legal and illegal water footprint of the Western Mancha Aquifer (Spain) Environmental Science and Policy. 51:256-266.

Marselle MR, Irvine KN, Lorenzo-Arribas A, Warber SL. 2015. Moving beyond green: Exploring the relationship of environment type and indicators of perceived environmental quality on emotional well-being following group walks. International Journal of Environmental Research and Public Health. 12:106-130.

van der Wal R, Fischer A, Selge S, Larson B. 2015. Neither the public nor experts judge species primarily on their origins. Environmental Conservation. 42:349-355.

Lu YW, McGavin W, Cock PJA, Schnettler E, Yan F, Chen JP, MacFarlane SA. 2015. Newly identified RNAs of raspberry leaf blotch virus encoding a related group of proteins. Journal of General Virology. 96:3432-3439.

McNeilly TN, Mitchell MC, Corbishley A, Nath M, Simmonds H, McAteer SP, Mahajan A, Low JC, Smith DGE, Huntley JF et al.. 2015. Optimizing the protection of cattle against Escherichia coli O157:H7 colonization through immunization with different combinations of H7 Flagellin, Tir, Intimin-531 or EspA. PLoS ONE. 10:e0128391.

Eves-van den Akker S, Lilley CJ, Jones JT, Urwin PE. 2015. Plant-parasitic nematode feeding tubes and plugs: new perspectives on function. Nematology. 17:1-9.

Gulden RH, Tenuta M, Mitchell S, Langarica Fuentes A, Daniell TJ. 2015. Preceding crop and weed management history affect denitrification and denitrifier community structure throughout the development of durum wheat. Agriculture, Ecosystems and Environment. 212:49-63.

Hollis JM, Lilly A, Higgins A, Jones RJA, Keay CA, Bellamy P. 2015. Predicting the water retention characteristics of UK soils. European Journal of Soil Science. 66:239-252.

Guimaraes MH, McKee A, Lima ML, Vasconcelos L, Boski T, Dentinho T. 2015. Putting transdisciplinarity into practice: a mixed mode procedure for stakeholder participation in natural resource management. Journal of Environmental Planning and Management. 58:1827-1852.

O'Leary GJ, Christy B, Nuttall J, Huth J, Cammarano D, Stöckle C, Basso B, Shcherbak I, Fitzgerald G, Luo Q et al.. 2015. Response of wheat growth, grain yield and water use to elevated CO2 under a Free Air CO2 Enrichment (FACE) experiment and modelling in a semi-arid environment. Global Change Biology.. 21:2670-2686.

Fisher DO, Johnson CN, Lawes MJ, Fritz SA, McCallum H, Blomberg SP, van der Wal J, Abbott B, Frank A, Legge S et al.. 2015. Response to commentary by Woinarski (Critical-weight-range marsupials in northern Australia are declining: a commentary on Fisher et al. (2014) 'The current decline of tropical marsupials in Australia: is history repeating?') Global Ecology and Biogeography. 24:123-125.

Lobley GE, Holtrop G, Horgan GW, Bremner DM, Fyfe C, Johnstone AM. 2015. Responses in gut hormones and hunger to diets with either high protein or a mixture of protein plus free amino acids supplied under weight-loss conditions. British Journal of Nutrition. 113:1254-1270.

Eigenbrode SD, Birch ANE, Lindzey S, Meadow R, Snyder WE. 2015. Review: A mechanistic framework to improve understanding and applications of push-pull systems in pest management. Journal of Applied Ecology. 53:202-212.

Asseng S, Ewert F, Martre P, Rötter R, Lobell D, Cammarano D, Kimball B, Ottman M, Wall G, White JW et al.. 2015. Rising temperatures reduce global wheat production. Nature Climate Change. 5:143-147.

Plieninger T, Bieling C, Fagerholm N, Byg A, Hartel T, Hurley P, López-Santiago CA, Nagabhatla N, Oteros-Rozas E, Raymond CM et al.. 2015. The role of cultural ecosystem services in landscape management and planning. Current Opinion in Environmental Sustainability. 14:28-33.

Chimungu GJ, Loades KW, Lynch JP. 2015. Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays). Journal of Experimental Botany. 66:3151-3162.

Boden LA, Auty H, Bessell P, Duckett D, Liu J, Kyle C, McKee A, Sutherland LA, Reynolds J, Bronsvoort BMD et al.. 2015. Scenario planning: The future of the cattle and sheep industries in Scotland and their resiliency to disease. Preventive Veterinary Medicine. 121:353-364.

Hill R, Dyer GA, Lozada-Ellison LM, Gimona A, Martin-Ortega J, Munoz-Rojas J, Gordon IJ. 2015. A social-ecological systems analysis of impediments to delivery of the Aichi 2020 Targets and potentially more effective pathways to the conservation of biodiversity. Global Environmental Change, Human and Policy Dimensions. 34:22-34.

Moro M, Fischer A, Milner-Gulland EJ, Lowassa A, Naiman LC, Hanley ND. 2015. A stated preference investigation of household demand for illegally hunted bushmeat in the Serengeti, Tanzania. Animal Conservation. 18:377-386.

Makowski D, Asseng S, Ewert F, Bassu S, Durand JL, Li T, Martre P, Adam M, Aggarwal PK, Angulo C et al.. 2015. A statistical analysis of ensembles of crop model responses to climate change factors. Agricultural and Forest Meteorology. 214:483-493.

Zhang Z, Le Velly M, Rhind SM, Kyle CE, Hough RL, Duff EI, McKenzie C. 2015. A study on temporal trends and estimates of fate of Bisphenol A in agricultural soils after sewage sludge amendment. Science of the Total Environment. 515-516:1-11.

Lemaire B, Dlodlo O, Chimphango S, Stirton C, Schrire B, Boatwright JS, Honnay O, Smets E, Sprent JI, James EK et al.. 2015. Symbiotic diversity, specificity and distribution of rhizobia in native legumes of the Core Cape Subregion (South Africa). FEMS Microbiology Ecology. 91:1-17.

Lau MSY, Marion G, Streftaris G, Gibson G. 2015. A systematic bayesian integration of epidemiological and genetic data. PLoS Computational Biology. 11:e1004633.

Kamoun S, Furzer O, Jones JDG, Judelson HS, Ali GS, Dalio RJD, Roy SG, Schena L, Zambounis A, Panabieres F et al.. 2015. The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.

Cresswell HP, Lilly A. 2015. A two-point method for determining the soil water characteristic of typical northern temperate boreal soils. Geoderma Regional. 5:71-76.

Wallace JM, Milne JS, Aitken RP, Redmer DA, Reynolds LP, Luther JS, Horgan GW, Adam CL. 2015. Undernutrition and stage of gestation influence fetal adipose tissue gene expression. Journal of Molecular Endocrinology. 54:263-275.

L.iang XJ, Hillier S, Pendlowski H, Gray N, Ceci A, Gadd GM. 2015. Uranium phosphate biomineralization by fungi. Environmental Microbiology. 17:2064-2075.

Stubbs RJ, Morris L, Pallister C, Horgan G, Lavin JH. 2015. Weight outcomes audit in 1.3 million adults during their first 3 months' attendance in a commercial weight management programme. BMC Public Health. 15

Pakeman RJ, Alexander J, Beaton J, Brooker R, Cummins R, Eastwood A, Fielding D, Fisher J, Gore S, Hewison R et al.. 2015. Y Species composition of coastal dune vegetation in Scotland has proved resistant to climate change over a third of a century. Global Change Biology. 21:3738-3747.

2014

Bogdanova MI, Wanless S, Harris MP, Lindstrom J, Butler A, Newell MA, Sato K, Watanuki Y, Parsons M, Daunt F. 2014. Among-year and within-population variation in foraging distribution of European shags Phalacrocorax aristotelis over two decades: implications for marine spatial planning. Biological Conservation. 170:292-299.

Simpson CG, Lewandowska D, Liney M, Davidson D, Chapman S, Fuller J, McNicol J, Shaw P, Brown JWS. 2014. Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially. New Phytologist. 203:424-436.

Mitchell RJ, Beaton JK, Bellamy PE, Broome A, Chetcuti J, Eaton S, Ellis CJ, Gimona A, Harmer R, Hester AJ et al.. 2014. Ash dieback in the UK: a review of the ecological and conservation implications and potential management options. Biological Conservation. 175:95-109.

Arpaia S, Messean A, Birch NA, Hokannen H, Hartel S, Van Loon J, Lovei G, Park J, Spreafico H, Squire GR et al.. 2014. Assessing and monitoring impacts of genetically modified plants on agro-ecosystems: the approach of the AMIGA project. Entomologia. 2:79-86.

Looseley ME, Newton AC. 2014. Assessing the consequences of microbial infection in field trials; seen, unseen, beneficial, parasitic and pathogenic. Agronomy. 4:302-321.

Vinten AJA, Loades K, Addy S, Richards S, Stutter MI, Cook Y, Watson H, Taylor C, Abel C, Baggaley N et al.. 2014. Assessment of the use of sediment fences for control of erosion and sediment phosphorus loss after potato harvesting on sloping land. Science of the Total Environment. 468-469:1234-1244.

Tipping E, Benham S, Boyle JF, Crow P, Davies J, Fischer U, Guyatt H, Helliwell RC, Jackson-Blake L, Lawlor AJ et al.. 2014. Atmospheric deposition of phosphorus to land and freshwater. Environmental Science: Processes and Impacts. 16:1608-1617.

Schreiber M, Wright F, MacKenzie K, Hedley PE, Schwerdt JG, Little A, Burton RA, Fincher GB, Marshall D, Waugh R et al.. 2014. The barley genome sequence assembly reveals three additional members of the CsIF (1,3;1,4) - beta-glucan synthase gene family. PLoS ONE. 9:e90888.

Makarov VV, Makarova SS, Love AJ, Sinitsyna OV, Dudnik A, Yaminsky I, Taliansky ME, Kalinina NO. 2014. Biosynthesis of stable iron nanoparticles in aqueous extracts of Hordeum vulgare and Rumex acetosa plants. Langmuir. 30:5982-5988.

Liu WYY, Ridgway HJ, James TK, James EK, Chen WM, Sprent JI, Young JPW, Andrews M. 2014. Burkholderia sp. induces functional nodules on the South African invasive legume Dipogon lignosus (Phaseoleae) in New Zealand soils. Microbial Ecology. 68:542-555.

Azevedo RA, Lea PJ, Leather SR, McNicol JW, Millman CA, Haslam RP, Valkonen JPT. 2014. The centenary of Annals of Applied Biology in 2014. Annals of Applied Biology. 164:1-7.

Mayer KFX, Rogers J, Dolezel J, Pozniak C, Eversole K, Feuillet C, Gill B, Friebe B, Lukaszewski AJ, Sourdille P et al.. 2014. A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science. 345

Shaw J, Love AJ, Makarova SS, Kalinina NO, Harrison BD, Taliansky ME. 2014. Coilin, the signature protein of Cajal bodies, differentially modulates the interactions of plants with viruses in widely different taxa. Nucleus-Austin. 5:85-94.

Gustafsson JP, Lumsdon DG. 2014. Comment on "Citrate adsorption can decrease soluble phosphate concentration in soils: Results of theoretical modeling" by Duputel, M.; Devau, N.; Brossard, M.; Jaillard, B.; Jones, D.L.; Hinsinger, P. & Gerard, F. (2013). Applied Geochemistry. 46:85-89.

Farmer J, Matthews R, Smith P, Langan C, Hergoualc'h K, Verchot L, Smith JU. 2014. Comparison of methods for quantifying soil carbon in tropical peats. Geoderma. 214:177-183.

Burchill W, James EK, Li D, Lanigan GJ, Williams M, Iannetta PPM, Humphreys J. 2014. Comparisons of biological nitrogen fixation in association with white clover (Trifolium repens L.) under four fertiliser nitrogen inputs as measured using two 15N techniques. Plant and Soil. 385:287-302.

Moulin L, Klonowska A, Bournaud C, Booth K, Vriezen JAC, Melkonian R, James EK, Young JPW, Bena G, Hauser L et al.. 2014. Complete genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. Standards in Genomic Sciences. 9

Wang ZC, Liu ZF, Xu KH, Mayer LM, Zhang ZL, Kolker AS, Wu W. 2014. Concentrations and sources of polycyclic aromatic hydrocarbons in surface coastal sediments of the northern Gulf of Mexico. Geochemical Transactions. 15

Schoeb CS, Callaway RM, Anthelme F, Brooker RW, Cavieres LA, Kikvidze Z, Lortie CJ, Michalet R, Pugnaire FI, Xiao S et al.. 2014. The context dependence of beneficiary feedback effects in plant facilitations. New Phytologist. 204:386-396.

Fisher DO, Johnson CN, Lawes MJ, Fritz SA, McCallum H, Blomberg SP, van der Wal J, Abbott B, Frank A, Legge S et al.. 2014. The current decline of tropical marsupials in Australia: is history repeating? Global Ecology and Biogeography. 23:181-190.

Sutherland CS, Elston DA, Lambin X. 2014. A demographic, spatially explicit patch occupancy model of metapopulation dynamics and persistence. Ecology. 95:3149-3160.

Zhang LP, Wang XH, Li YY, Wu YL, Zhang ZL. 2014. Determination of estrogenic compounds in water of Jiulong River using polar organic chemical integrative sampler. Environmental Science. 35:117-122.

Potts T, Burdon D, Jackson E, Atkins J, Saunders J, Hastings E, Langmead O. 2014. Do Marine Protected Areas deliver flows of ecosystem services to support human welfare? Marine Policy. 44:139-148.

Evans NP, Bellingham M, Sharpe RM, Cotinot C, Rhind SM, Kyle C, Erhard H, Hombach-Klonisch S, Lind PM, Fowler PA. 2014. Does grazing on biosolids-treated pasture pose a pathophysiological risk associated with increased exposure to endocrine disrupting compounds? Journal of Animal Science. 92:3185-3198.

Herbert LJ, Vali L, Hoyle DV, Innocent G, McKendrick IJ, Pearce MC, Mellor D, Porphyre T, Locking M, Allison L et al.. 2014. E-coli O157 on Scottish cattle farms: Evidence of local spread and persistence using repeat cross-sectional data. BMC Veterinary Research. 10

Howland BWA, Stojanovic D, Gordon IJ, Manning AD, Lindenmayer DB. 2014. Eaten out of house and home: impacts of grazing on ground-dwelling reptiles in Australian grasslands and grassy woodlands. PLoS ONE. 9:e105966.

Stokes A, Douglas GB, Fourcaud T, Giadrossich F, Gillies C, Hubble T, Kim JH, Loades KW, Mao Z, McIvor IR et al.. 2014. Ecological mitigation of hillsope instability: ten key issues facing researchers and practitioners. Plant and Soil. 377:1-23.

Shepherd LVT, Hackett CA, Alexander CJ, Sungurtas JA, Pont SDA, Stewart D, McNicol JW, Wilcockson SJ, Leifert C, Davies HV. 2014. Effect of agricultural production systems on the potato metabolome. Metabolomics. 10:212-224.

Stockan JA, Baird J, Langan SJ, Young MR, Iason GR. 2014. Effects of riparian buffer strips on ground beetles (Coleoptera, Carabidae) within an agricultural landscape. Insect Conservation and Diversity. 7:172-184.

Searle KR, Barber J, Stubbins F, Labuschagne K, Carpenter S, Butler A, Denison E, Sanders C, Mellor PS, Wilson A et al.. 2014. Environmental drivers of Culicoides phenology: how important is species-specific variation when determining disease policy? PLoS One. 9:e111876.

Wylie CE, Shaw DJ, Fordyce FM, Lilly A, McGorum BC. 2014. Equine grass sickness in Scotland: A case-control study of signalment- and meteorology-related risk factors. Equine Veterinary Journal. 46:64-71.

Rossez Y, Holmes A, Lodberg-Pedersen H, Birse L, Marshall J, Willats WGT, Toth IK, Holden NJ. 2014. Escherichia coli common pilus (ECP) targets arabinosyl residues in plant cell walls to mediate adhesion to fresh produce plants. Journal of Biological Chemistry. 289:34349-34365.

Fazey I, Bunse L, Msika J, Pinke M, Preedy K, Evely AC, Lambert E, Hastings E, Morris S, Reed MS. 2014. Evaluating knowledge exchange in interdisciplinary and multi-stakeholder research. Global Environmental Change - Human and Policy Dimensions. 25:204-220.

Frank ASK, Johnson CN, Potts JM, Fisher A, Lawes MJ, Woinarski JCZ, Tuft K, Radford IJ, Gordon IJ, Collis MA et al.. 2014. Experimental evidence that feral cats cause local extirpation of small mammals in Australia's tropical savannas. Journal of Applied Ecology. 51:1486-1493.

Villar N, Cornulier T, Evans D, Pakeman RJ, Redpath S, Lambin X. 2014. Experimental evidence that livestock grazing intensity affects cyclic vole population regulation processes. Population Ecology. 56:55-61.

Fischer A, Naiman LC, Lowassa A, Randall D, Rentsch D. 2014. Explanatory factors for household involvement in illegal bushmeat hunting around Serengeti, Tanzania. Journal for Nature Conservation. 22:491-496.

Bagousse-Pinguet LY, Xiao S, Brooker RW, Gross N, Liancourt P, Straile D, Michalet R. 2014. Facilitation displaces hotspots of diversity and allows communities to persist in heavily stressed and disturbed environments. Journal of Vegetation Science.. 25:66-76.

Cavieres LA, Brooker RW, Butterfield BJ, Cook BJ, Kikvidze Z, Lortie CJ, Michalet R, Pugnaire FI, Schoeb C, Xiao S et al.. 2014. Facilitative plant interactions and climate simultaneously drive alpine plant diversity. Ecology Letters. 17:193-202.

Forsberg NEG, Russell J, Macaulay M, Leino MW, Hagenblad J. 2014. Farmers without borders - genetic structuring in century old barley (Hordeum vulgare). Heredity. 114:195-206.

Eves-van den Akker S, Lilley CJ, Ault JR, Ashcroft AE, Jones JT, Urwin PE. 2014. The feeding tube of cyst nematodes: characterisation of protein exclusion. PLoS ONE. 9:e87289.

Gilhespy S, Anthony S, Cardenas L, Chadwick D, del Prado A, Li C, Middelbrook T, Rees RM, Salas W, Sanz-Cobena A et al.. 2014. First 20 years of DNDC: model evolution. Ecological Modelling. 292:51-62.

Zheng X, McLellan H, Fraiture M, Liu X, Boevink PC, Gilroy EM, Chen Y, Kandel K, Sessa G, Birch PRJ et al.. 2014. Functionally redundant RXLR effectors from Phytophthora infestans act at different steps to suppress early flg22-triggered immunity. PLoS Pathogens. 10:e1004057.

Looseley ME, Keith R, Guy D, Barral-Baron G, Thirugnanasambandam A, Harrap D, Werner P, Newton AC. 2014. Genetic mapping of resistance to Rhynchosporium commune and characterisation of early infection in a winter barley mapping population. Euphytica. Published online.

Graham NS, Hammond JP, Lysenko A, Mayes S, O'Lochlainn S, Blasco B, Bowen HC, Rawlings CJ, Rios JJ, Welham S et al.. 2014. Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs. The Plant Cell. 26:2818-2830.

Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok VC, Cock PJA et al.. 2014. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology. 15

Thorpe P, Mantelin S, Cock PJA, Blok VC, Coke MC, van Den Akker SE, Guzeeva E, Lilley CJ, Smant G, Reid AJ et al.. 2014. Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida. BMC Genomics. 15

Melkonian R, Moulin R, Bena G, Tisseyre P, Chaintreuil C, Heulin K, Rezkallah N, Klonowska A, Gonzalez S, Simon M et al.. 2014. The geographical patterns of symbiont diversity in the invasive legume Mimosa pudica can be explained by the competitiveness of its symbionts and by the host genotype. Environmental Microbiology. 16:2099-2111.

Schoeb C, Michalet R, Cavieres LA, Pugnaire FI, Brooker RW, Butterfield BJ, Cook BJ, Kikvidze Z, Lortie CJ, Xiao S et al.. 2014. A global analysis of bidirectional interactions in alpine plant communities shows facilitators experiencing strong reciprocal fitness costs. New Phytologist. 202:95-105.

Lobley GE, Johnstone AM, Fyfe C, Horgan GW, Holtrop G, Bremner DM, Broom I, Schweiger L, Welch A. 2014. Glucose uptake by the brain on chronic high-protein weight-loss diets with either moderate or low amounts of carbohydrate. British Journal of Nutrition. 111:586-597.

Makarov VV, Love AJ, Sinitsyna OV, Makarova SS, Yaminsky IV, Taliansky ME, Kalinina NO. 2014. "Green" nanotechnologies: synthesis of metal nanoparticles using plants. Acta Naturae. 6:35-44.

Pozsgai G, Littlewood NA. 2014. Ground beetle (Coleoptera: Carabidae) population declines and phenological changes: is there a connection? Ecological Indicators. 41:15-24.

Liu H, Bayer M, Druka A, Russell J, Hackett C, Poland J, Ramsay L, Hedley P, Waugh R. 2014. High resolution mapping of the Breviaristatum-e (ari-e) locus in cultivated barley using genotyping by sequencing (GBS). BMC Genomics. 15

van Den Akker SE, Lilley CJ, Jones JT, Urwin PE. 2014. Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes. PLoS Pathogens. 10:ArticleNo.e1004391.

Lewis RJ, Pakeman RJ, Marrs RH. 2014. Identifying the multi-scale spatial structure of plant community determinants of an important national resource. Journal of Vegetation Science. 25:184-197.

Salman HS, Laing R, Conniff A. 2014. The impact of computer aided architectural design programs on conceptual design in an educational context. Design Studies. 35:412-428.

Salonen A, Lahti L, Salojarvi J, Holtrop G, Korpela K, Duncan SH, Date P, Farquharson F, Johnstone AM, Lobley GE et al.. 2014. Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men. ISME Journal. 8:2218-2230.

Lu YL, Song S, Wang RS, Liu ZY, Meng J, Sweetman AJ, Jenkins A, Ferrier RC, Li H, Luo W et al.. 2014. Impacts of soil and water pollution on food safety and health risks in China. Environment International. 77:5-15.

Matthews RB, van Noordwijk M, Lambin E, Meyfroidt P, Gupta J, Verchot L, Veldkamp E, Hergoualc'h K. 2014. Implementing REDD+ (Reducing Emissions from Deforestation and Degradation): evidence on governance, evaluation and impacts from the REDD-ALERT project. Mitigation and Adaptation Strategies for Global Change. 19:907-925.

Donn S, Wheatley RE, McKenzie BM, Loades KW, Hallett PD. 2014. Improved soil fertility from compost amendment increases root growth and reinforcement of surface soil on slopes. Ecological Engineering.. 71:458-465.

Fowler PA, Childs AJ, Courant F, Mackenize A, Rhind SM, Antignac JP, Le Bizec B, Filis P, Evans F, Flannigan S et al.. 2014. In utero exposure to cigarette smoke dysregulates human fetal ovarian developmental signalling. Human Reproduction. 29:1471-1489.

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Littlewood NA, Greenwood S, Quin S, L.O. Pakeman RJ, Woodin SJ. 2014. Long-term trends in restored moorland vegetation assemblages. Community Ecology.. 15:104-112.

Sulpice R, Ishihara H, Schlereth A, Cawthray GR, Encke B, Giavalisco P, Ivakov A, Arrivault S, Jost R, Krohn N et al.. 2014. Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell and Environment. 37:1276-1298.

Stubbs RJ, O'Reilly LM, Whybrow S, Fuller Z, Johnstone AM, Livingstone MBE, Ritz P, Horgan GW. 2014. Measuring the difference between actual and reported food intakes in the context of energy balance under laboratory conditions. British Journal of Nutrition. 111:2032-2043.

Senapati N, Hulugalle NR, Smith P, Wilson BR, Yeluripati JB, Daniel H, Ghosh S, Lockwood P. 2014. Modelling soil organic carbon storage with RothC in irrigated Vertisols under cotton cropping systems in the sub-tropics. Soil and Tillage Research. 143:38-49.

Lisboa FJG, Peres-Neto PR, Chaer GM, Jesus EC, Mitchell RJ, Chapman SJ, Berbara RLL. 2014. Much beyond Mantel: bringing Procrustes Association metric to the plant and soil ecologist's toolbox. PLoS ONE. 9:e101238.

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Ernfors M, Brennan FP, Richards KG, McGeough KL, Griffiths BS, Laughlin RJ, Watson CJ, Philippot L, Grant J, Minet E et al.. 2014. The nitrification inhibitor dicyandiamide increases mineralisation-immobilisation turnover in slurry amended grassland soil. Journal of Agricultural Science. 152:S137-S149.

Michael G, Bahri-Esfahani J, Li QW, Rhee YJ, Wei Z, Fomina M, Liang XJ. 2014. Oxalate production by fungi: significance in geomycology, biodeterioration and bioremediation. Fungal Biology Reviews. 28:36-55.

Michalet R, Schoeb C, Lortie CJ, Brooker RW, Callaway RM. 2014. Partitioning net interactions among plants along altitudinal gradients to study community responses to climate change. Functional Ecology. 28:75-86.

Helliwell RC, Aherne J, MacDougall G, Nisbet TR, Lawson D, Cosby BJ, Evans CD. 2014. Past acidification and recovery of surface waters, soils and ecology in the United Kingdom: Prospects for the future under current deposition and land use protocols. Ecological Indicators. 37:381-395.

Fenton O, Healy MG, Brennan FP, Jahangir MMR, Lanigan GJ, Richards KG, Thornton SF, Ibrahim TG. 2014. Permeable reactive interceptors - blocking diffuse nutrient and greenhouse gases losses in key areas of the farming landscape. Journal of Agricultural Science. 152:S71-S81.

Pantidos N, Boath A, Lund V, Conner S, McDougall GJ. 2014. Phenolic-rich extracts from the edible seaweed, Ascophyllum nodosum, inhibit alpha-amylase and alpha-glucosidase: Potential anti-hyperglycemic effects. Journal of Functional Foods. 10:201-209.

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Burra DD, Berkowitz O, Hedley PE, Morris J, Resjo S, Levander F, Liljeroth E, Andreasson E, Alexandersson E. 2014. Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans. BMC Plant Biology. 14

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Zhang XG, McGeoch SC, Johnstone AM, Holtrop G, Sneddon AA, MacRury SM, Megson IL, Pearson DWM, Abraham P, de Roos B et al.. 2014. Platelet-derived microparticle count and surface molecule expression differ between subjects with and without type 2 diabetes, independently of obesity status. Journal of Thrombosis and Thrombolysis. 37:455-463.

Hudson LN, Newbold T, Contu S, Hill SLL, Lysenko I, De Palma A, Phillips HRP, Senior RA, Bennett DJ, Booth H et al.. 2014. The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts. Ecology and Evolution. 4:4701-4735.

Bengtsson T, Weighill D, Proux-Wera E, Levander F, Resjo S, Burra DD, Moushib LI, Hedley PE, Liljeroth E, Jacobson D et al.. 2014. Proteomics and transcriptomics of BABA-induced resistance response in potato using a novel functional annotation approach. BMC Genomics. 15

Fischer A, Selge S, van der Wal R, Larson B. 2014. The public and professionals reason similarly about the management of non-native invasive species: a quantitative investigation of the relationship between beliefs and attitudes. PLoS ONE. 9:e105495.

Jones CM, Spor A, Brennan FP, Breuol MC, Bru D, Lemanceau P, Griffiths B, Hallin S, Philppot L. 2014. Recently identified microbial guild mediates soil N2O sink capacity. Nature Climate Change. 4:801-805.

Hindle MM, Martin SF, Noordally ZB, van Ooijen G, Barrios-Llerena ME, Simpson TI, Le Bihan T, Millar AJ. 2014. The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species. BMC Genomics. 15:640.

Heltoft P, Brierley JL, Lees AK, Sullivan L, Lynott J, Hermansen A. 2014. The relationship between soil inoculum and the development of Fusarium dry rot in potato cultivars Asterix and Saturna. European Journal of Plant Pathology. 146:711-714.

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Foereid B, Ward DS, Mahowald N, Paterson E, Lehmann J. 2014. The sensitivity of carbon turnover in the Community Land Model to modified assumptions about soil processes. Earth Systems Dynamics. 5:211-221.

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McDougall GJ, Conner S, Pereira-Caro G, Gonzalez-Barrio R, Brown EM, Verrall S, Stewart D, Moffet T, Ibars M, Lawther R et al.. 2014. Tracking (poly)phenol components from raspberries in ileal fluid. Journal of Agricultural and Food Chemistry. 62:7631-7641.

Eves-van den Akker S, Lilley CJ, Danchin EGJ, Rancurel C, Cock PJA, Urwin PE, Jones JT. 2014. The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biology and Evolution. 6:2181-2194.

Russell J, Hackett C, Hedley P, Lui H, Milne L, Bayer M, Marshall D, Jorgensen L, Gordon S, Brennan R. 2014. The use of genotyping by sequencing in blackcurrant (Ribes nigrum): developing high-resolution linkage maps in species without reference genome sequences. Molecular Breeding. 33:835-849.

Love AJ, Makarov V, Yaminsky I, Kalinina NO, Taliansky ME. 2014. The use of tobacco mosaic virus and cowpea mosaic virus for the production of novel metal nanomaterials. Virology. 449:133-139.

Lewis RJ, Pakeman RJ, Angus S, Marrs RH. 2014. Using compositional and functional indicators for biodiversity conservation monitoring of semi-natural grasslands in Scotland. Biological Conservation. 175:82-93.

2013

Fischer A, Kerezi V, Arroyo B, Mateos-Delibes M, Tadie D, Lowassa A, Skogen K, Figari H. 2013. (De-) legitimising hunting - discourses over the morality of hunting in Europe and Eastern Africa. Land Use Policy. 32:261-270.

Sutherland C, Elston DA, Lambin X. 2013. Accounting for false positive detection error induced by transient individuals. Wildlife Research. 40:490-498.

McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G et al.. 2013. Agriculture: Feeding the future. Nature. 499:23-24.

Lichner L, Hallett PD, Drongova Z, Czachor H, Kovacik L, Mataix-Solera J, Homolak M. 2013. Algae influence the hydrophysical parameters of a sandy soil. Catena. 108:58-68.

Butterfield BJ, Cavieres LA, Callaway RM, Cook BJ, Kikvidze Z, Lortie CJ, Michalet R, Pugnaire FI, Schoeb C, Xiao S et al.. 2013. Alpine cushion plants inhibit the loss of phylogenetic diversity in severe environments. Ecology Letters. 16:478-486.

Troldborg M, Aalders I, Towers W, Hallett PD, McKenzie BM, Bengough AG, Lilly A, Ball BC, Hough RL. 2013. Application of Bayesian Belief Networks to quantify and map areas at risk to soil threats: using soil compaction as an example. Soil Tillage and Research. 132:56-68.

Lewis TD, Rowan JS, Hawes C, McKenzie BM. 2013. Assessing the importance of soil erosion to the seedbank biodiversity in arable agro-ecosystems. Progress in Physical Geography. 37:622-641.

Card SD, Tapper BA, Lloyd-West C, Wright KM. 2013. Assessment of fluorescein-based fluorescent dyes for tracing Neotyphodium endophytes in planta. Mycologia. 105:221-229.

Giaramida L, Manage PM, Edwards C, Singh BK, Lawton LA. 2013. Bacterial communities' response to microcystins exposure and nutrient availability: Linking degradation capacity to community structure. International Biodeterioration and Biodegradation. 84:111-117.

Seim GL, Ahn CI, Bodis MS, Luwedde F, Miller DD, Hillier S, Tako E, Glahn RP, Young SL. 2013. Bioavailability of iron in geophagic earths and clay minerals, and their effect on dietary iron absorption using an in vitro digestion/Caco-2 cell model. Food and Function. 4:1263-1270.

Loades KW, Bengough AG, Bransby MF, Hallett PD. 2013. Biomechanics of nodal, seminal and lateral roots of barley: effects of diameter, waterlogging and mechanical impedance. Plant and Soil. 370:407-418.

Dunn SM, Johnston L, Taylor C, Watson H, Cook Y, Langan SJ. 2013. Capability and limitations of a simple grid-based model for simulating land use influences on stream nitrate concentrations. Journal of Hydrology. 507:110-123.

Sun Q, Liu J, Zhang Q, Qing X, Dobson G, Li X, Qi B. 2013. Characterization of three novel desaturases involved in the delta-6 desaturation pathways for polyunsaturated fatty acid biosynthesis from Phytophthora infestans. Applied Microbiology and Biotechnology. 97:7689-7697.

Munang R, Thiaw I, Alverson K, Mumba M, Liu J, Rivington M. 2013. Climate change and ecosystem-based adaptation: a new pragmatic approach to buffering climate change impacts. Current Opinion in Environmental Sustainability. 5:67-71.

Lusser M, Davies HV. 2013. Comparative regulatory approaches for groups of new plant breeding techniques. New Biotechnology. 30:437-446.

Chapman SJ, Bell JS, Campbell CD, Hudson G, Lilly A, Nolan AJ, Robertson AHJ, Potts JM, Towers W. 2013. Comparison of soil carbon stocks in Scottish soils between 1978 and 2009. European Journal of Soil Science. 64:455-465.

Rhind SM, Kyle CE, Kerr C, Osprey M, Zhang ZL, Duff EI, Lilly A, Nolan A, Hudson G, Towers W et al.. 2013. Concentrations and geographic distribution of selected organic pollutants in Scottish surface soils. Environmental Pollution. 182:15-27.

Brooker RW, Kikvidze Z, Kunstler G, Liancourt P, Seifan M. 2013. The concept and measurement of importance: a comment on Rees et al. 2012. Journal of Ecology. 101:1369-13789.

Sharma SK, Bolser D, de Boer J, Sonderkaer M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS et al.. 2013. Construction of reference chromosome-scale Pseudomolecules for potato: integrating the potato genome with genetic and physical maps. G3-Genomes Genomes Genetics. 3:2031-2047.

Liu N, Roberts D. 2013. Counter urbanisation, planning and house prices: an analysis of the Aberdeen housing market area, 1984 - 2010. Town Planning Review. 84:81-105.

Lukhovitskaya NI, Thaduri S, Garushyants SK, Torrance L, Savenkov EI. 2013. Deciphering the mechanism of defective interfering RNA (DI RNA) biogenesis reveals that a viral protein and the DI RNA act antagonistically in virus infection. Journal of Virology. 87:6091-6103.

Mahbub A, Le Maitre CL, Haywood-Small SL, McDougall GJ, Cross NA. 2013. Differential effects of polyphenols on proliferation and apoptosis in human myeloid and lymhoid leukemia cell lines. Anti-Cancer Agents in Medicinal Chemistry. 13:1601-1613.

Rushworth AM, Bowman AW, Brewer MJ, Langan SJ. 2013. Distributed lag models for hydrological data. Biometrics. 69:537-544.

Andrews M, Raven JA, Lea PJ. 2013. Do plants need nitrate? The mechanisms by which nitrogen form affects plants Annals of Applied Biology. 163:174-199.

Gushchin VA, Lukhovitskaya NI, Andreev DE, Wright KM, Taliansky ME, Solovyev AG, Morozov S, MacFarlane SA. 2013. Dynamic localization of two tobamovirus ORF6 proteins involves distinct organellar compartments. Journal of General Virology. 94:230-240.

Andow DA, Lovei GL, Arpaia S, Wilson L, Fontes EMG, Hilbeck A, Lang A, Van Tuat N, Pires CSS, Sujii ER et al.. 2013. An ecologically-based method for selecting ecological indicators for assessing risks to biological diversity from genetically-engineered plants. Journal of Biosafety. 22:141-156.

Alday JG, Cox ES, Pakeman RJ, Harris MPK, Le Duc MG, Marrs RH. 2013. Effectiveness of Calluna-heathland restoration methods after invasive plant control. Ecological Engineering. 54:218-226.

Li Y, Cooke DEL, Jacobsen E, Van der Lee T. 2013. Efficient multiplex simple sequence repeat genotyping of the oomycete plant pathogen Phytophthora infestans. Journal of Microbiological Methods. 92:316-322.

Lane N, Martin WF, Raven JA, Allen JF. 2013. Energy, genes and evolution: introduction to an evolutionary synthesis. Philosophical Transactions of the Royal Society, B. 368:20120253.

Cameron DR, Van Oijen M, Werner C, Butterbach-Bahl K, Grote R, Haas E, Heuvelink GBM, Kiese R, Kros J, Kuhnert M et al.. 2013. Environmental change impacts on the C- and N-cycle of European forests: a model comparison study. Biogeosciences. 10:1751-1773.

James MC, Bowman AS, Forbes KJ, Lewis F, McLeod JE, Gilbert L. 2013. Environmental determinants of Ixodes ricinus ticks and the incidence of Borrelia burgdorferi sensu lato, the agent of Lyme borreliosis, in Scotland. Parasitology. 140:237-246.

Fyans JK, Bignell D, Loria R, Toth IK, Palmer T. 2013. The ESX/type VII secretion system modulates development, but not virulence, of the plant pathogen Streptomyces scabies. Molecular Plant Pathology. 14:119-130.

Yu CL, Karlin DG, Lu YW, Wright K, Chen JP, MacFarlane S. 2013. Experimental and bioinformatic evidence that raspberry leaf blotch emaravirus P4 is a movement protein of the 30K superfamily. Journal of General Virology. 94:2117-2128.

Villar N, Lambin X, Evans D, Pakeman RJ, Redpath S. 2013. Experimental evidence that livestock grazing intensity affects the activity of a generalist predator. Acta Oecologia. 49:12-16.

Getachew AM, Innocent G, Proudman CJ, Trawford A, Feseha G, Reid SWJ, Faith B, Love S. 2013. Field efficacy of praziquantel oral paste against naturally acquired equine cestodes in Ethiopia. Parasitology Research. 112:141-146.

Galvez N, Hernandez F, Laker J, Gilabert H, Petitpas R, Bonacic C, Gimona A, Hester AJ, Macdonald DW. 2013. Forest cover outside protected areas plays an important role in the conservation of the Vulnerable guina Leopardus guigna. Oryx. 47:251-258.

Weil Z, Liang X, Pendlowski H, Hillier S, Suntornvongasul K, Sihanonth P, Gadd GM. 2013. Fungal biotransformation of zinc silicate and sulfide mineral ores. Environmental Microbiology. 15:2173-2186.

Alimi NA, Bink MCAM, Dieleman JA, Nicolai M, Wubs M, Heuvelink E, Magan J, Voorrips RE, Jansen J, Rodrigues PC et al.. 2013. Genetic and QTL analyses of yield and a set of physiological traits in pepper. Euphytica. 190:181-201.

Yannic G, Pellissier L, Ortego J, Lecomte N, Couturier S, Cuyler C, Dussault C, Hundertmark KJ, Irvine RJ, Jenkins DA et al.. 2013. Genetic diversity in caribou linked to past and future climate change. Nature Climate Change. 4:132-137.

Bull TJ, Schock A, Sharp JM, Greene M, McKendrick IJ, Sales J, Linedale R, Stevenson K. 2013. Genomic variations associated with attenuation in Mycobacterium avium subsp paratuberculosis vaccine strains. BMC Microbiology, 13, Article No.11..

Shaughnessy LJ, Smith LA, Evans J, Anderson D, Caldow G, Marion G, Low JC, Hutchings MR. 2013. High prevalence of paratuberculosis in rabbits is associated with difficulties in controlling the disease in cattle. Veterinary Journal. 198:267-270.

Shi L, Shi TX, Broadley MR, White PJ, Long Y, Meng JL, Xu FS, Hammond JP. 2013. High-throughput root phenotyping screens identify genetic loci associated with root architectural traits in Brassica napus under contrasting phosphate availabilities. Annals of Botany. 112:381-389.

Monson R, Burr T, Carlton T, Liu H, Hedley P, Toth IK, Salmond GPC. 2013. Identification of genes in the VirR regulon of Pectobacterium atrosepticum and characterization of their roles in quorum sensing-dependent virulence. Environmental Microbiology. 15:687-701.

Laird J, McInally C, Carr C, Doddiah S, Yates G, Chrysanthou E, Khattab A, Love AJ, Geri C, Sadanandom A et al.. 2013. Identification of the domains of Cauliflower mosaic virus protein P6 responsible for the suppression of RNA-silencing and salicylic acid-signaling. Journal of General Virology. 94:2777-2789.