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Woinarski JCZ, Legge S, Fitzsimons JA, Traill BJ, Burbidge AA, Fisher A, Firth RSC, Gordon IJ, Griffiths AD, Johnson C et al..  2011.  The disappearing mammal fauna of northern Australia: context, cause, and response. Conservation Letters. 4:192-201.
Day-Stirrat RJ, Milliken KL, Dutton SP, Loucks RG, Hillier S, Aplin AC, Schleicher AM.  2011.  Discussion in response to Knut Bjorlykke regarding JMPG_1376 "Open-System Chemical Behavior In Deep Wilcox Group Mudstones, Texas Gulf Coast, USA". Marine and Petroleum Geology. 28:1383-1384.
Villamor GB, van Noordwijk M, Le QB, Lusiana B, Matthews RB.  2011.  Diversity deficits in modelled landscape mosaics. Ecological Informatics. 6:73-82.
Hepburn CD, Pritchard DW, Cornwall CE, McLeod RJ, Beardall J, Raven JA, Hurd CL.  2011.  Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Global Change Biology. 17:2488-2497.
Iason GR, O'Reilly-Wapstra J, Brewer MJ, Summers RW, Moore BD.  2011.  Do multiple herbivores maintain chemical diversity of Scots pine monoterpenes? Philosophical Transactions of the Royal Society, Series B. 366:1337-1345.
Walker AW, Ince J, Duncan SH, Webster L, Holtrop G, Ze X, Brown DS, Stares MD, Scott P, Bergerat A et al..  2011.  Dominant and diet-responsive groups of bacteria within the human colonic microbiota. International Society for Microbial Ecology (ISME) Journal. 5:220-230.
Byrne SL, Foito A, Hedley PE, Morris J, Stewart D, Barth S.  2011.  Early response mechanisms of perennial ryegrass (Lolium perenne) to phosphorous deficiency. Annals of Botany. 107:243-254.
Garcia-Palacios P, Bowker MA, Chapman SJ, Maestre FT, Soliveres S, Gallardo A, Valladares F, Guerrero C, Castillo-Monroy AP, Escudero A.  2011.  Early-successional vegetation changes after roadside prairie restoration modify soil functioning by changing microbial functional diversity. Soil Biology and Biochemistry. 43:1245-1253.
McAllister RRJ, G. TJ, Reeson AF, Gordon IJ.  2011.  Economic behavior in the face of resource variability and uncertainty. Ecology and Society. 16:6.
Koikkalainen RK, l Dawson A, Mayes RW, Smith JU.  2011.  Effect of plant species, nitrogen fertilizer and grass age on the dynamics of intra-aggregate SOM. Soil Biology and Biochemistry. 43:1104-1107.
Swanston JS, Middlefell-Williams J, Forster BP, Thomas WTB.  2011.  Effects of grain and malt beta-glucan on distilling quality in a population of hull-less barley. Journal of the Institute of Brewing. 117:389-393.
Jayakody S, Sibbald AM, Mayes RW, Hooper RJ, Gordon IJ, Lambin X.  2011.  Effects of human disturbance on the diet composition of wild red deer Cervus elaphus. European Journal of Wildlife Research. 57:939-948.
Adams T, Ackland G, Marion G, Edwards C.  2011.  Effects of local interaction and dispersal on the dynamics of size-structured populations. Ecological Modelling. 222:1414-1422.
Karami N, Clemente R, Moreno-Jimenez E, Lepp NW, Beesley L.  2011.  Efficiency of green waste compost and biochar soil amendments for reducing lead and copper mobility and uptake to ryegrass. Journal of Hazardous Materials. 191:41-48.
Johnson SN, Barton AT, Clark KE, Gregory PJ, McMenemy LS, Hancock RD.  2011.  Elevated atmospheric carbon dioxide impairs the performance of root-feeding vine weevils by modifying root growth and secondary metabolites. Global Change Biology. 17:688-695.
Fischer A, Peters V, Vavra J, Neebe M, Megyesi G.  2011.  Energy use, climate change and folk psychology: Does sustainability have a chance? Results from a qualitative study in five European countries Global Environmental Change. 21:1025-1034.
Martin-Ortega J, Giannocaro G, Berbel J.  2011.  Environmental and resource costs under water scarcity conditions: an estimation in the context of the European Water Framework Directive. Water Resources Management. 25:1615-1633.
McIntosh BS, Ascough, J. C. II, Twery M, Chew J, Elmahdi A, Haase D, Harou JJ, Hepting D, Cuddy S, Jakeman AJ et al..  2011.  Environmental decision support systems (EDSS) development - challenges and best practices. Environmental Modelling and Software. 26:1389-1402.
Marcon M, Mariano K, Braga RA, Paglis CM, Scalco MS, Horgan GW.  2011.  Estimation of total leaf area in perennial plants using image analysis. Revista Brasileira de Engenharia Agricola e Ambiental. 15:96-101.
Turner SP, Farnworth MJ, Mendl M, Erhard HW, Lawrence AB.  2011.  Evidence for residence-induced enhancement of aggressiveness in the non-territorial pig. Applied Animal Behaviour Science. 130:10-19.
Martin P, Johnson SN.  2011.  Evidence that elevated CO2 reduces resistance to the European large raspberry aphid in some raspberry cultivars. Journal of Applied Entomology. 135:237-240.
Hofinger BJ, Russell JR, Bass CG, Baldwin T, dos Reis M, Hedley PE, Li Y, Macaulay M, Waugh R, Hammond-Kosack KE et al..  2011.  An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20:3653-3668.
Mayer CD, Lorent J, Horgan GW.  2011.  Exploratory analysis of multiple omics datasets using the adjusted RV coefficient. Statistical Applications in Genetics and Molecular Biology. 10:14.
Asensio AC, Marino D, James EK, Ariz I, Arrese-Igor C, Aparicio-Tejo PM, Arredondo-Peter RJ, Moran JF.  2011.  Expression and localization of a Rhizobium-derived cambialistic superoxide dismutase in pea (Pisum sativum) nodules subjected to oxidative stress. Molecular Plant-Microbe Interactions. 24:1247-1257.
Subedi M, Hocking TJ, Fullen MA, McCrea AR, Milne E.  2011.  Factors influencing the effectiveness of an agro-environmental project in China. Outlook on Agriculture. 40:157-163.
Moreno-Jimenez E, Beesley L, Lepp NW, Dickinson NM, Hartley W, Clemente R.  2011.  Field sampling of soil pore water to evaluate trace element mobility and associated environmental risk. Environmental Pollution. 159:3078-3085.
McGeoch SC, Holtrop G, Fyfe C, Lobley GE, Pearson DW, Abraham P, Megson IL, MacRury SM, Johnstone AM.  2011.  Food intake and dietary glycaemic index in free-living adults with and without type 2 diabetes melitus. Nutrients. 3:683-693.
Bernhardt-Romermann M, Gray A, Vanbergen AJ, Berges L, Bohner A, Brooker RW, De Bruyn L, De Cinti B, Dirnbrock T, Grandin U et al..  2011.  Functional traits and local environment predict vegetation responses to disturbance: a pan-European multi-site-experiment. Journal of Ecology. 99:777-787.
Malosetti M, van Eeuwijk FA, Boer MP, Casas AM, Elia M, Moralejo M, Bhat PR, Ramsay L, Molina-Cano J.  2011.  Gene and QTL detection in a three-way barley cross under selection by a mixed model with kinship information using SNPs. Theoretical and Applied Genetics. 122:1605-1616.
Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M et al..  2011.  Genetic dissection of barley morphology and development. Plant Physiology. 155:617-627.
Martin-Sanz A, Caminero C, Jing R, Flavell AJ, de la Vega MP.  2011.  Genetic diversity among Spanish pea (Pisum sativum L.) landraces, pea cultivars and the world Pisum sp. core collection assessed by retrotransposon-based insertion polymorphisms (RBIPs). Spanish Journal of Agricultural Research. 9:166-178.
Sait M, Clark EM, Wheelhouse N, Spalding L, Livingstone M, Sachse K, Markey BK, Magnino S, Siarkou VI, Vretou E et al..  2011.  Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. Veterinary Microbiology. 151:284-290.
Xu X, Pan SK, Cheng SF, Zhang B, Mu DS, Ni PX, Zhang GY, Yang S, Li RQ, Wang J et al..  2011.  Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJA et al..  2011.  Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathogens. 7:e1002219.
Lambe NR, Richardson RI, Macfarlane JM, Nevison I, Haresign W, Matika O, Bunger L.  2011.  Genotypic effects of the Texel Muscling QTL (TM-QTL) on meat quality in purebred Texel lambs. Meat Science. 89:125-132.
Rhind SM, Kyle CE, Mackie C, Yates K, Duff EI.  2011.  Geographic variation in tissue accumulation of endocrine disrupting compounds (EDCs) in grazing sheep. Environmental Pollution. 159:416-422.
Speed J, Austrheim G, Hester AJ, Mysterud A.  2011.  Growth limitation of mountain birch caused by sheep browsing at the altitudinal treeline. Forest Ecology and Management. 261:1344-1352.
Baker RH, Buschbaum S, Matthews J, McKendrick IJ, Schnieder T, Strube C, Nisbet AJ.  2011.  GTP-cyclohydrolase and development in Teladorsagia circumcinta and Dictyocaulus viviparus (Nematoda:Strongylida). Experimental Parasitology. 128:309-317.
Shahinnia F, Druka A, Franckowiak JD, Morgante M, Waugh R, Stein N.  2011.  High resolution mapping of Dense spike-ar ( to the genetic centromere of barley chromosome 7H. Theoretical and Applied Genetics. 124:373-384.
Schmalenbach I, March TJ, Bringezu T, Waugh R, Pillen K.  2011.  High-resolution genotyping of wild barley introgression lines and fine-mapping of the threshability locus thresh-1 using the Illumina GoldenGate assay. Genes Genomes Genetics. 1:187-196.
Liu H, McNicol JW, Bayer MM, Morris JA, Cardle L, Marshall DF, Schulte D, Stein N, Shi B, Tandien S et al..  2011.  Highly parallel gene-to-BAC addressing using microarrays. Biotechniques. 50:165-174.
Russell JR, Bayer MM, Booth C, Cardle L, Hackett CA, Hedley PE, Jorgensen L, Morris JA, Brennan RM.  2011.  Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum). BMC Plant Biology. 11:147.
Beesley L, Marmiroli M.  2011.  The immobilisation and retention of soluble arsenic, cadmium and zinc by biochar. Environmental Pollution. 159:474-480.
Marconi M, Giordano M, Raven JA.  2011.  Impact of taxonomy, geography and depth on delta C-13 and delta N-15 variation in a large collection of macroalgae. Journal of Phycology. 47:1023-1035.
Mclean MH, Murray GI, Stewart KN, Norrie G, Mayer C, Hold GL, Thompson J, Fyfe M, Hope M, Mowat NAG et al..  2011.  The inflammatory microenvironment in colorectal neoplasia. PLoS ONE. 6:e15366.
Manning AD, Wood J, Cunningham RB, McIntyre S, Shorthouse DJ, Gordon IJ, Lindenmayer DB.  2011.  Integrating research and restoration: a long-term woodland experiment in south-eastern Australia. Australian Zoologist. 35:633-648.
Halas S, Skrzypek G, Meier-Augenstein W, Pelc A, Kemp HF.  2011.  Inter-laboratory calibration of new silver orthophosphate comparison materials for stable oxygen isotope analysis of phosphates. Rapid Communications in Mass Spectrometry. 25:579-584.
Ramsay L, Comadran J, Druka A, Marshall DF, Thomas WTB, Macaulay M, MacKenzie K, Simpson CG, Fuller J, Bonar N et al..  2011.  INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nature Genetics. 43:169-172.
McKeown NK, Bishop JL, Cuadros J, Hillier S, Amador E, Makarewicz HD, Parente M, Silver EA.  2011.  Interpretation of reflectance spectra of clay mineral-silica mixtures: implications for Martian clay mineralogy at Mawrth Vallis. Clays and Clay Minerals. 59:400-415.
NicDaeid NN, Meier-Augenstein W, Kemp HF.  2011.  Investigating the provenance of un-dyed spun cotton fibre using multi-isotope profiles and chemometric analysis. Rapid Communications in Mass Spectrometry. 25:1812-1816.
Upadhyaya HD, Dwivedi SL, Ambrose M, Ellis N, Berger J, Smykal P, Debouck D, Duc G, Dumet D, Flavell A et al..  2011.  Legume genetic resources: management, diversity assessment, and utilization in crop improvement. Euphytica. 180:27-47.
Gyaneshwar P, Hirsch AM, Moulin L, Chen WM, Elliott GN, Bontemps C, Estrada-de los Santos P, Gross E, dos Reis J, F.B et al..  2011.  Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Molecular Plant-Microbe Interactions. 24:1276-1288.
Macdonald CA, Clark IM, Zhao FJ, Hirsch PR, Singh BK, McGrath SP.  2011.  Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils. Soil Biology and Biochemistry. 43:932-941.
Whitfield S, Reed M, Thomson KJ, Christie M, Stringer L, Quin CH, Anderson R, Moxey A, Hubacek K.  2011.  Managing peatland ecosystem services: current UK policy and future challenges in a changing world. Scottish Geographical Journal. 127:209-230.
Frederiksen M, Elston DA, Edwards M, Mann AD, Wanless S.  2011.  Mechanisms of long-term decline in size of lesser sandeels in the North Sea explored using a growth and phenology model. Marine Ecology Progress Series. 432:137-147.
Veresoglou SD, Mamolos AP, Thornton B, Voulgari OK, Sen R, Veresoglou S.  2011.  Medium-term fertilization of grassland plant communities masks plant species linked effects on soil microbial community structure. Plant and Soil. 344:187-196.
Abreu IN, Choi YH, Sawaya ACHF, Eberlin MN, Mazzafera P, Verpoorte R.  2011.  Metabolic alterations in different development stages Pilocarpus microphyllus. Planta Medica. 77:293-300.
Beleggia R, Platani C, Papa R, Di Chio A, Barros E, Mashaba C, Wirth J, Fammartino A, Sautter C, Conner S et al..  2011.  Metabolomics and food processing: from semolina to pasta. Journal of Agricultural and Food Chemistry. 59:9366-9377.
Rubio-Aliaga I, de Roos B, Duthie SJ, Crosley LK, Mayer C, Horgan GW, Colquhoun IJ, Le Gall G, Huber F, Kremer W et al..  2011.  Metabolomics of prolonged fasting in humans reveals new catabolic markers. Metabolomics. 7:375-387.
Ronfort C, Souchere V, Martin P, Sebillotte C, Castellazzi MS, Barbottin A, Meynard JM, Laignel B.  2011.  Methodology for land use change scenario assessment for runoff impacts: A case study in a north-western European Loess belt region (Pays de Caux, France). Catena. 86:36-48.
Bohan DA, Powers SJ, Champion G, Haughton AJ, Hawes C, Squire GR, Cussans J, Mertens SK.  2011.  Modelling rotations: can crop sequences explain arable weed seedbank abundance? Weed Research. 51:422-432.
Oliveira CMG, Monteiro AR, Blok VC.  2011.  Morphological and molecular diagnostics for plant-parastic nematodes: working together to get the identification done. Tropical Plant Pathology. 36:65-73.
van Doorn WG, Beers EP, Dangl JL, Franklin-Tong VE, Gallois P, Hara-Nishimura I, Jones AM, Kawai-Yamada M, Lam E, Mundy J et al..  2011.  Morphological clasification of plant cell deaths. Cell Death and Differentiation. 18:1241-1246.
Xiao H, Hourihan JM, Brown LJ, McMahon M, Stewart D, Hayes JD.  2011.  Nrf2-mediated induction of antioxidant response element-driven gene expression by flavonoids is dependent on their chemical structure. Toxicology. 290:126-127.
de Carcer DA, Cuiv O, Wang T, Kang S, Worthley D, Whitehall V, Gordon IJ, McSweeney C, Leggett B, Morrison M.  2011.  Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon. ISME Journal. 5:801-809.
Torres GA, Gong Z, Iovene M, Hirsch C, Buell CR, Bryan GJ, Novak P, Macas J, Jiang J.  2011.  Organization and evolution of subtelomeric satellite repeats in the potato genome. Genes Genomes Genetics. 1:85-92.
Yan X, De Clercq P, Han R, Jones JT, Chen S, Moens M.  2011.  Osmotic responses of different strains of Steinernema carpocapsae. Nematology. 13:845-851.
McGavin WJ, Cock PJA, MacFarlane SA.  2011.  Partial sequence and RT-PCR diagnostic test for the plant rhabdovirus Raspberry vein chlorosis virus. Plant Pathology. 60:462-467.
Comadran J, Ramsay L, MacKenzie K, Hayes P, Close TJ, Muehlbauer G, Stein N, Waugh R.  2011.  Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theoretical and Applied Genetics. 122:523-531.
Ross HA, Morris WL, Ducreux LJM, Hancock RD, Verrall SR, Morris JA, Tucker GA, Stewart D, Hedley PE, McDougall GJ et al..  2011.  Pectin engineering to modify product quality in potato. Plant Biotechnology Journal. 9:848-856.
Smkal P, Kenicer G, Flavell AJ, Corander J, Kosterin O, Redden RJ, Ford R, Coyne CJ, Maxted M, Ambrose MJ et al..  2011.  Phylogeny, phylogeography and genetic diversity of the Pisum genus. Plant Genetic Resources. 9:4-18.
Bjorkman M, Klingen I, Birch ANE, Bones AM, Bruce T, Johansen T, Meadow R, Molmann J, Selijasen R, Smart L et al..  2011.  Phytochemicals of Brassicaceae in plant protection and human health - influences of climate, environment and agronomic practice. Phytochemistry. 72:538-556.
Johnson SN, Staley JT, McLeod FAL, Hartley SE.  2011.  Plant-mediated effects of soil invertebrates and summer drought on above-ground multitrophic interactions. Journal of Ecology. 99:57-65.
Veronico P, Melillo MT, Saponaro C, Leonetti P, Picardi E, Jones JT.  2011.  A polygalacturonase-inhibiting protein with a role in pea defence against the cyst nematode Heterodera goettingianna. Molecular Plant Pathology. 12:275-287.
Mattila PH, Hellstrom J, McDougall GJ, Dobson G, Pihlava JM, Tiirikka.T, Stewart D, Karjalainen RO.  2011.  Polyphenol and vitamin C content in European commercial blackcurrant juice products. Food Chemistry. 127:1216-1223.
Moloney PD, Hearne JW, Gordon IJ, McLeod S.  2011.  Portfolio optimisation techniques for a mixed-grazing scenario for Australia's rangelands. Natural Resource Modeling. 24:102-116.
Ross HA, Wright KM, McDougall GJ, Roberts AG, Chapman SN, Morris WL, Hancock RD, Stewart D, Tucker GA, James EK et al..  2011.  Potato tuber pectin structure is influenced by pectin methyl esterase activity and impacts on cooked potato texture. Journal of Experimental Botany. 62:371-381.
Elston DA, Nevison IM, Scott WA, Sier ARJ, Morecroft MD.  2011.  Power calculations for monitoring studies: a case study with alternative models for random variation. Environmetrics. 22:618-625.
Fox NJ, White PCL, McClean CJ, Marion G, Evans A, Hutchings MR.  2011.  Predicting impacts of climate change on Fasciola hepatica risk. PLoS ONE. 6:e16126.
Gilroy EM, Breen S, Whisson SC, Squires J, Hein I, Kaczmarek M, Turnbull D, Boevink P, Lokossou A, Cano LM et al..  2011.  Presence/absence, differential expression and sequence polmorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants. New Phytologist. 191:763-776.
Evans J, Knight H, McKendrick IJ, Stevenson H, Barbudo AV, Gunn GJ, Low JC.  2011.  Prevalence of Escherichia coli O157: H7 and serogroups O26, O103, O111 and O145 in sheep presented for slaughter in Scotland. Journal of Medical Microbiology. 60:653-660.
Gontikaki E, Mayor DJ, Thornton B, Black K, Witte U.  2011.  Processing of 13C-labelled diatoms by a bathyal community at sub-zero temperatures. Marine Ecology Progress Series. 421:39-50.
Nijnik M, Miller DR, Nijnik, M.; Mather A, Fiorini S, Vogt N, Brondizio E, Morrice JG.  2011.  Public participation for planning the sustainable use of natural resources and landscape changes. International Journal of Interdisciplinary Social Sciences. 5:303-320.
Moles AT, Wallis IR, Foley WJ, Warton DI, Bisigato AJ, Clark CJ, Cohen PS, Cornwell WK, Edwards EWR, Gonzales-Ojeda T et al..  2011.  Putting plant defences on the map: a test of the idea that plants are better defended at lower latitudes. New Phytologist. 191:777-788.
Vinuela-Fernandez I, Jones E, McKendrick IJ, Molony V.  2011.  Quantitative assessment of increased sensitivity of chronic laminitic horses to hoof tester evoked pain. Equine Veterinary Journal. 43:62-68.
Matthews KB, Rivington M, Blackstock KL, McCrum G, Buchan K, Miller DG.  2011.  Raising the bar? The challenge of evaluating the outcomes of environmental modelling and software Environmental Modelling and Software. 26:247-257.
Mantelin S, Peng H, Li B, tamian HS, Takken FLW, Kaloshian I.  2011.  The receptor-like kinase SlSERK1 is required for Mi-1-mediated resistance to potato aphids in tomato. Plant Journal. 67:459-471.
Hammond JP, Mayes S, Bowen HC, Graham NS, Hayden RM, Love CG, Spracklen WP, Wang J, Welham SJ, White PJ et al..  2011.  Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa. Plant Physiology. 156:1230-1241.
Nazaries L, Tate KR, Ross DJ, Singh J, Dando J, Saggar S, Baggs EM, Millard P, Murrell JC, Singh BK.  2011.  Response of methanotrophic communities to afforestation and reforestation in New Zealand. ISME Journal. 5:1832-1836.
Sibbald AM, Hooper RJ, McLeod JE, Gordon IJ.  2011.  Responses of red deer (Cervus elaphus) to regular disturbance by hill walkers. European Journal of Wildlife Research. 57:817-825.
Kennedy E, Curran J, Mayes B, McEvoy M, Murphy JP, O'Donovan M.  2011.  Restricting dairy cow access time to pasture in early lactation: the effects on milk production, grazing behaviour and dry matter intake. Animal. 5:1805-1813.
Beesley L, Moreno-Jimenez E, Gomez-Eyles JL, Harris E, Robinson B, Sizmur T.  2011.  A review of biochars' potential role in the remediation, revegetation and restoration of contaminated soils. Environmental Pollution. 159:3269-3282.
Ashfaq M, McGavin WJ, MacFarlane SA.  2011.  RNA2 of TRV SYM breaks the rules for tobravirus genome structure. Virus Research. 160:435-438.
Jiang N, Wang MH, Jia TY, Wang L, Leach L, Hackett CA, Marshall DF, Luo ZW.  2011.  A robust statistical method for association-based eQTL analysis. PLoS ONE. 6:e23192.
Bengough AG, McKenzie BM, Hallett PD, Valentine TA.  2011.  Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits. Journal of Experimental Botany. 62:59-68.
Lux A, Martinka M, Vaculik M, White PJ.  2011.  Root responses to cadmium in the rhizosphere: a review. Journal of Experimental Botany. 62:21-37.
Luo S, Tai H, Zebarth B, Li XQ, Millard P, De Koeyer D, Xiong X.  2011.  Sample collection protocol effects on quantification of gene expression in potato leaf tissue. Plant Molecular Biology Reporter. 29:369-378.
Warren CR, McKee AJ.  2011.  The Scottish revolution? Evaluating the impacts of post devolution land reform Scottish Geographical Journal. 127:17-39.
Hart DJ, Fairweather-Tait SJ, Broadley MR, Dickinson SJ, Foot I, Knott P, McGrath SP, Mowat H, Norman K, Scott PR et al..  2011.  Selenium concentration and speciation in biofortified flour and bread: Retention of selenium during grain biofortification, processing and production of Se-enriched food. Food Chemistry. 126:1771-1778.
Minet E, Goodhue R, Coxon CE, Kalin RM, Meier-Augenstein W.  2011.  Simplifying and improving the extraction of nitrate from freshwater for stable isotope analyses. Journal of Environmental Monitoring. 13:2062-2066.
Brewer MJ, Tetzlaff D, Malcolm IA, Soulsby C.  2011.  Source distribution modelling for end-member mixing in hydrology. Environmetrics. 22:921-932.
Ceccon C, Panzacchi P, Scandellari F, Prandi L, Ventura M, Russo B, Millard P, Tagliavini M.  2011.  Spatial and temporal effects of soil temperature and moisture and the relation to fine root density on root and soil respiration in a mature apple orchard. Plant and Soil. 342:195-206.
Demars BOL, Manson JR, Olafsson JS, Gislason GM, Friberg N.  2011.  Stream hydraulics and temperature determine the metabolism of geothermal Icelandic streams. Knowledge Management of Aquatic Ecosystem. 402:17pp.
Bisi F, Newey SJ, Nodari M, Wauters LA, Harrison A, Thirgood SJ, Martinoli A.  2011.  The strong and the hungry: Bias in capture methods for mountain hares Lepus timidus. Wildlife Biology. 17:311-316.
Barakate A, Stephens J, Goldie A, Hunter WN, Marshall DF, Hancock RD, Lapierre C, Morreele K, Boerjane W, Halpin C.  2011.  Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco. Plant Cell. 23:4492-4506.
Alexandrov GA, Ames D, Aumann C, Bellocchi G, Bruen M, Crout N, Erechtchoukova M, Hildebrandt A, Hoffman F, Jackisch C et al..  2011.  Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26:328-336.
Martin-Fernandez JA, Palarea-Albaladejo J, Barcelo-Vidal C.  2011.  Tecnicas composicionales para concentraciones geoquimicas por debajo del limite de deteccion. Boletin Instituto Geologico y Minero de Espana. 122:459-468.
Demars BOL, Manson JR, Olafsson JS, Gislason GM, Gudmundsdottir R, Woodward G, Reiss J, Pichler D, Rasmussen JJ, Friberg N.  2011.  Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.
Tolkamp BJ, Allcroft DJ, Barrio JP, Bley TAG, Howie JA, Jacobsen TB, Morgan CA, Schweitzer DPN, Wilkinson S, Yeates MP et al..  2011.  The temporal structure of feeding behaviour. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology. 301:R378-R393.
Sutherland LA, Barnes A, McCrum G, Blackstock KL, Toma L.  2011.  Towards a cross-sectoral analysis of land use decision-making in Scotland. Landscape and Urban Planning. 100:1-10.
Graham J, Hackett CA, Smith K, Woodhead M, MacKenzie K, Tierney I, Cooke DEL, Bayer MM, Jennings N.  2011.  Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry. Theoretical and Applied Genetics. 123:585-601.
Massa AN, Childs KL, Lin HN, Bryan GJ, Giuliano G, Buell CR.  2011.  The transcriptome of the reference potato genome Solanum tuberosum group phureja clone DM1-3 516R44. PLoS ONE. 6:e26801.
Cook N, Aziz N, Hedley PE, Morris J, Milne L, Karley AJ, Hubbard SF, Russell JR.  2011.  Transcriptome sequencing of an ecologically important graminivorous sawfly: a resource for marker development. Conservation Genetics Resources. 3:789-795.
Millard P, Way D.  2011.  Tree competition and defense against herbivores: currency matters when counting the cost. Tree Physiology. 31:579-581.
Augusto L, Zeller B, Midwood AJ, Swanston C, Dambrine E, Schneider A, Bosc A.  2011.  Two year dynamics of foliage labelling in 8 year-old Pinus pinaster trees with 15N 26Mg and 42Ca - simulation of Ca transport using an upscaling approach. Annals of Forest Science. 68:169-178.
Bell MJ, Worrall F, Smith P, Bhogal A, Black HIJ, Lilly A, Barraclough D, Merrington G.  2011.  UK land-use change and its impact on SOC: 1925-2007. Global Biogeochemical Cycles. 25
Adams T, Ackland G, Marion G, Edwards C.  2011.  Understanding plantation transformation using a size-structured spatial population model. Forest Ecology and Management. 261:799-809.
Quilliam R, Williams AP, Avery L, Malham S, Jones D.  2011.  Unearthing human pathogens at the agricultural-environment interface: A review of current methods for the detection of Escherichia coli O157 in freshwater ecosystems. Agriculture, Ecosystems and Environment. 140:354-360.
Mayer KFX, Martis M, Hedley PE, Simkova H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H et al..  2011.  Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell. 23:1249-1263.
Granger SJ, Bol R, Hawkins JMB, White SM, Naden PS, Old GH, Marsh JK, Bilotta GS, Brazier RE, Macleod CJA et al..  2011.  Using artificial fluorescent particles as tracers of livestock wastes within an agricultural catchment. Science of the Total Environment. 409:1095-1103.
Zetsche E, Thornton B, Midwood AJ, Witte U.  2011.  Utilisation of different carbon sources in a shallow estuary identified through stable isotope techniques. Continental Shelf Research. 31:832-840.
Morris WL, Ducreux LJM, Shepherd T, Lewinsohn E, Davidovich-Rikanati R, Sitrit Y, Taylor MA.  2011.  Utilisation of the MVA pathway to produce elevated levels of the sesquiterpene alpha copaene in potato tubers. Phytochemistry. 72:2288-2293.
Ascough PL, Bird MI, Francis SM, Thornton B, Midwood AJ, Scott A, Apperley D.  2011.  Variability in oxidative degradation of charcoal: influence of production variables and environmental exposure. Geochimica et Cosmochimica Acta. 75:2361-2378.
Koichi K, Mayer R, Kaur K, Cottrell AA, Gordon IJ.  2012.  Aboriginal rangers' perspectives on feral pigs: are they a pest or a resource? A case study in the wet tropics world heritage area of Northern Queensland Journal of Australian Indigenous Issues. 15:2-19.
Johnson SN, Clark KE, Hartley SE, Jones TH, McKenzie SW, Koricheva J.  2012.  Aboveground-belowground herbivore interactions: a meta-analysis. Ecology. 93:2208-2215.
Raven JA, Giordano M, Beardall J, Maberly SC.  2012.  Algal evolution in relation to atmospheric CO2: carboxylases, carbon-concentrating mechanisms and carbon oxidation cycles. Philosophical Transactions of the Royal Society, B. 367:493-507.
Rodriguez-Gutierrez G, Duthie GG, Wood S, Morrice P, Nicol F, Reid M, Cantlay LL, Kelder T, Horgan GW, Fernandez-Bolanos Guzman J et al..  2012.  Alperujo extract, hydroxytyrosol, and 3,4-dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin e-deficient ratsua proteomics and network analysis approach. Molecular Nutrition and Food Research. 56:1131-1147.
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol JW et al..  2012.  Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Research. 40:2454-2469.
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JWS.  2012.  Alternative splicing in plants - coming of age. Trends in Plant Science. 17:616-623.
James A, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JWS, Nimmo HG.  2012.  Alternative splicing mediates responses of the Arabidopsis thaliana circadian clock to temperature changes. The Plant Cell. 24:961-981.
Houston K, Druka A, Bonar N, Macaulay M, Lundqvist U, Franckowiak JD, Morgante M, Stein N, Waugh R.  2012.  Analysis of the barley bract suppression gene Trd1. Theoretical and Applied Genetics. 125:33-45.
De Smet I, White PJ, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F et al..  2012.  Analyzing lateral root development: how to move forward. The Plant Cell. 24:15-20.
Morenoa FC, Gordon IJ, Knox MR, Summer PM, Skerrat LF, Benvenutti MA, Saumell CA.  2012.  Anthelmintic efficacy of five tropical native Australian plants against Haemonchus contortus and Trichostrongylus colubriformis in experimentally infected goats (Capra hircus). Veterinary Parasitology. 187:237-243.
Vinten AJA, Martin-Ortega J, Glenk K, Booth P, Balana BB, MacLeod M, Lago M, Moran D, Jones M.  2012.  Application of the WFD cost proportionality principle to diffuse pollution mitigation: a case study for Scottish Lochs. Journal of Environmental Management. 97:28-37.
Minh ND, Hough RL, Thuy LT, Nyberg Y, Mai LB, Vinh NC, Khai NM, Oborn I.  2012.  Assessing dietary exposure to cadmium in a metal recycling community in Vietnam: age and gender aspects. Science of the Total Environment. 416:164-171.
Berbel J, Kolberg S, Martin-Ortega J.  2012.  Assessment of the draft hydrological basin plan of the Guadalquivir River Basin (Spain). Water Resources Development.. 28:43-55.
MacKenzie K, Hackett CA.  2012.  Association mapping in a simulated barley population. Euphytica. 183:337-347.
Jordan MO, Wendler R, Millard P.  2012.  Autumnal N storage determines the spring growth, N uptake and N internal cycling of young peach trees. Trees - Structure and Function. 26:393-404.
Thomas CR, Gordon IJ, Wooldridge S, Marshall P.  2012.  Balancing the trade-offs between ecological and economic risks in the Great Barrier Reef: a pragmatic conceptual framework. Human and Ecological Risk Assessment.. 18:69-91.
Martin-Ortega J, Brouwer R, Ojea E, Berbel J.  2012.  Benefit transfer and spatial heterogeneity of preferences for water quality improvements. Journal of Environmental Management. 106:22-29.
Boath AS, Grussu D, Stewart D, McDougall GJ.  2012.  Berry polyphenols inhibit digestive enzymes: a source of potential health benefits? Food Digestion. 3:1-7.
Linder HP, Bykova O, Dyke J, Etienne RS, Hickler T, Kuehn I, Marion G, Ohlemueller R, Schymanski SJ, Singer A.  2012.  Biotic modifiers, environmental modulation and species distribution models. Journal of Biogeography. 39:2179-2190.
Love AJ, Geri C, Laird J, Carr C, Yun BW, Loake GJ, Tada Y, Sadanandom A, Milner JJ.  2012.  Cauliflower mosaic virus protein P6 inhibits signaling responses to salicylic acid and regulates innate immunity. PLoS One. 7:e47535.
Logie L, Harthill J, Patel K, Bacon S, Hamilton DL, Macrae K, McDougall GJ, Wang HH, Xue L, Jiang H et al..  2012.  Cellular responses to the metal-binding properties of metformin. Diabetes. 61:1423-1433.
Valdes Y, Viaene N, Blok V, Palomares-Rius JE, Moens M.  2012.  Changes in the pre-parasitic developmental stage of Globodera rostochiensis in response to green manures. Nematology. 14:925-932.
Brittain SR, Cox AG, Tomos AD, Paterson E, Siripinyanond A, McLeod CW.  2012.  Chemical speciation studies on DU contaminated soils using flow field flow fractionation linked to inductively coupled plasma mass spectrometry (FIFFF-ICP-MS). Journal of Environmental Monitoring. 14:782-790.
Alizai A, Hillier S, Clift PD, Giosan L, Hurst A, VanLaningham S, Macklin M.  2012.  Clay mineral variations in holocene terrestrial sediments from the Indus Basin. Quaternary Research. 77:368-381.
Fischer A, Peters V, Neebe M, Vavra J, Kriel A, Lapka M, Megyesi B.  2012.  Climate change? No, wise resource use is the issue: social representations of energy, climate change and the future Environmental Policy and Governance. 22:161-176.
Fridley JD, Grime JP, Huston MA, Pierce S, Smart SM, Thompson K, Boerger L, Brooker RW, Cerabolini BEL, Gross N et al..  2012.  Comment on "Productivity Is a Poor Predictor of Plant Species Richness". Science. 335:1441.
Suarez-Moreno ZR, Caballero-Mellado J, Coutinho BG, Mendonca-Previato L, James EK, Venturi V.  2012.  Common features of environmental and potentially beneficial plant-associated Burkholderia. Microbial Ecology. 63:249-266.
Krueger T, Quinton JN, Freer J, Macleod CJA, Bilotta GS, Brazier RE, Hawkins JMB, Haygarth PM.  2012.  Comparing empirical models for sediment and phosphorus transfer from soils to water at field and catchment scale under data uncertainty. European Journal of Soil Science. 63:221-223.
Palomares-Rius JE, Hedley PE, Cock PJA, Morris JA, Jones JT, Vovlas N, Blok V.  2012.  Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. Molecular Plant Pathology. 13:1120-1134.
Langkilde S, Schroder M, Frank T, Shepherd LVT, Conner S, Davies HV, Meyer O, Danier J, Rychlik M, Belknap WR et al..  2012.  Compositional and toxicological analysis of a GM potato line with reduced alpha-solanine content - A 90-day feeding study in the Syrian Golden hamster. Food and Chemical Toxicology. 64:177-185.
Vergara P, Mougeot F, Martinez-Padilla, J.; Millan J, Leckie F, Redpath SM.  2012.  The condition dependence of a secondary sexual trait is stronger under high parasite infection level. Behavioural Ecology. 23:502-511.
Balana BB, Muys B, Haregeweyn N, Descheemaeker K, Deckers J, Poesen J, Nyssen J, Mathijs E.  2012.  Cost-benefit analysis of soil and water conservation measures: The case of exclosures in northern Ethiopia. Forest Policy and Economics. 15:27-36.
Bakam I, Balana BB, Matthews RB.  2012.  Cost-effectiveness analysis of policy instruments for greenhouse gas emission mitigation in the agricultural sector. Journal of Environmental Management. 112:33-44.
Martin-Ortega J, Gonzalez-Eguino M, Markandya A.  2012.  The costs of drought: the 2007-2008 case of Barcelona. Water Policy. 14:539-560.
Deffuant G, Alvarez I, Barreteau O, de Vries B, Edmonds B, Gilbert N, Gotts N, Jabot F, Janssen S, Hilden M et al..  2012.  Data and models for exploring sustainability of human well-being in global environmental change. European Physical Journal Special Topics.. 214:519-545.
Ojea E, Martin-Ortega J, Chiabai A.  2012.  Defining and classifying ecosystem services for economic valuation: the case of forest water services. Environmental Science and Policy. 19-20:1-15.
Meier-Augenstein W, Kemp HF, Hardie SML.  2012.  Detection of counterfeit Scotch whisky by H-2 and O-18 stable isotope analysis. Food Chemistry. 133:1070-1074.
McCallum S, Woodhead M, Jorgensen L, Gordon SL, Brennan RM, Graham J, Hackett CA, Rowland LJ, Hancock JF, Olmstead JW et al..  2012.  Developing tools for long term breeding of blueberry germplasm for UK production. International Journal of Fruit Science. 12:294-303.
Pilot M, Jedrzejewski W, Sidorovich VE, Meier-Augenstein W, Kemp HF, Hoelzel AR.  2012.  Dietary differentiation and the evolution of population genetic structure in a highly mobile carnivore. PLoS ONE. 7:e39341.
Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG.  2012.  Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation. Nature Structural and Molecular Biology. 19:845-852.
Lockyer AE, Emery AM, Kane RA, Walker AJ, Mayer CD, Mitta G, Coustau C, Adema CM, Hanelt B, Rollinson D et al..  2012.  Early differential gene expression in haemocytes from resistant and susceptible biomphalaria glabrata strains in response to schistosoma mansoni. PLoS ONE, e511020. 7
Martin-Ortega J.  2012.  Economic prescriptions and policy applications in the implementation of the Water Framework Directive. Environmental Science and Policy. 24:83-91.
Mesa-Jurado MA, Martin-Ortega J, Ruto E, Berbel J.  2012.  The economic value of guaranteed water supply for irrigation under scarcity conditions. Agricultural Water Management. 113:10-18.
Thies F, Masson LF, Rudd A, Vaughan N, Tsang C, Brittenden J, Simpson WG, Duthie S, Horgan GW, Duthie G.  2012.  Effect of a tomato-rich diet on markers of cardiovascular disease risk in moderately overweight, disease-free, middle-aged adults: a randomized controlled trial. American Journal of Clinical Nutrition. 95:1013-1022.
Gilbert L, Maffey G, Ramsay SL, Hester AJ.  2012.  The effect of deer management on the abundance of Ixodes ricinus in Scotland. Ecological Applications. 22:658-667.
Zebarth BJ, Tai H, Luo SN, Millard P, De Koeyer D, Li XQ, Xiong XY.  2012.  Effect of nitrogen form on gene expression in leaf tissue of greenhouse grown potatoes during three stages of growth. American Journal of Potato Research. 89:315-327.
Bachmair E, Bots ML, Mennen LI, Kelder T, Evelo CT, Horgan GW, Ford I, de Roos B.  2012.  Effect of supplementation with an 80:20 cis9, trans11 conjugated linoleic acid blend on the human platelet proteome. Molecular Nutrition and Food Research. 56:1148-1159.
Macleod CJA, Falloon PD, Evans R, Haygarth PM.  2012.  The effects of climate change on the mobilization of diffuse substances from agricultural systems. Advances in Agronomy. 115:41-77.
Clark KE, Hartley SE, Brennan RM, Jennings SN, McMenemy LS, McNicol JW, Mitchell C, Johnson SN.  2012.  Effects of cultivar and egg density on a colonizing vine weevil (Otiorhynchus sulcatus) population and its impacts on red raspberry growth and yield. Crop Protection. 32:76-82.
Cheke RA, McWilliam AN, Mbereki C, van der Walt E, Mtobesya B, Magoma RN, Young S, Eberly JP.  2012.  Effects of the organophosphate fenthion for control of the red-billed quelea Quelea quelea on cholinesterase and haemoglobin concentrations in the blood of target and non-target birds. Ecotoxicology. 21:1761-1770.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2012.  Elevational advance of alpine plant communities is buffered by herbivory. Journal of Vegetation Science. 23:617-625.
Alcon F, Martin-Ortega J, Berbel J, de Miguel MD.  2012.  Environmental benefits of reclaimed water: an economic assessment in the context of the Water Framework Directive. Water Policy. 14:148-159.
Vergara P, Redpath SM, Martinez-Padilla, J.; Millan J, Mougeot F.  2012.  Environmental conditions influence red grouse ornamentation at a population level. Biological Journal of the Linnean Society. 107:788-798.
Vergara P, Martinez-Padilla, J.; Millan J, Mougeot F, Leckie F, Redpath SM.  2012.  Environmental heterogeneity influences the reliability of secondary sexual traits as condition indicators. Journal of Evoluationary Biology. 25:20-28.
Yelina NE, Choi K, Chelysheva L, Macaulay M, de Snoo B, Wijnker E, Miller N, Drouaud J, Grelon M, Copenhaver GP et al..  2012.  Epigenetic remodeling of meiotic crossover frequency in arabidopsis thaliana DNA methyltransferase mutants. PLoS Genetics. 8:e1002844.
Bakam I, Pajot G, Matthews RB.  2012.  Estimating carbon price from a closed emission trading scheme in the agricultural sector. Journal of Land Use Science. 6:1-18.
Shibu ME, Matthews RB, Bakam I, Moffat AJ, Baggaley NJ.  2012.  Estimating greenhouse gas abatement potential of biomass crops in Scotland under various management options. Biomass and Bioenergy. 47:211-227.
Minet E, Coxon CE, Goodhue R, Richards KG, Kalin RM, Meier-Augenstein W.  2012.  Evaluating the utility of N-15 and O-18 isotope abundance analyses to identify nitrate sources: a soil zone study. Water Research. 46:3723-3736.
Schultz L, Cogan NOI, McLean K, Dale MFB, Bryan GJ, Forster JW, Slater AT.  2012.  Evaluation and implementation of a potential diagnostic molecular marker for H1-conferred potato cyst nematode resistance in potato (Solanum tuberosum L.). Plant Breeding. 131:315-321.
Ferreira LMM, Celaya R, Santos AS, Guedes CMV, Rodrigues MAM, Mayes RW, Osoro K.  2012.  Evaluation of long-chain alcohols as diet composition markers in goats grazing heathland areas. Animal. 6:683-0692.
Adriaens ME, Jaillard M, Eijssen LMT, Mayer C, Evelo CTA.  2012.  An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies. BMC Genomics. 13:42-42.
Mitchell RJ, Hester AJ, Campbell CD, Chapman SJ, Cameron CM, Hewison RL, Potts JM.  2012.  Explaining the variation in the soil microbial community: do vegetation composition and soil chemistry explain the same or different parts of the microbial variation? Plant and Soil. 351:355-362.
Devos Y, Hails RS, Messean A, Perry JN, Squire GR.  2012.  Feral genetically modified herbicide tolerant oilseed rape from seed import spills: are concerns scientifically justified? Transgenic Research. 21:1-21.
Meharg AA, Edwards KJ, Schofield JE, Raab A, Feldmann J, Moran A, Bryant CL, Thornton B, Dawson JJC.  2012.  First comprehensive peat depositional records for tin, lead and copper associated with the antiquity of Europe’s largest cassiterite deposits. Journal of Archaeological Science. 39:717-727.
Worrall F, Davies H, Bhogal A, Lilly A, Evans M, Turner K, Burt T, Barraclough D, Smith P, Merrington G.  2012.  The flux of DOC from the UK - predicting the role of soils, land use and net watershed losses. Journal of Hydrology. 448-449:149-150.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.