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2013
Hackett CA, McLean K, Bryan GJ.  2013.  Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population. PLoS ONE.. 8:e63939.
Nijnik M, Miller DR, Nijnik, M.; Mather A.  2013.  Linking multi-functional forestry goals with sustainable development objectives: a multi-national Q-study with a particular focus on Scotland. Journal of Settlements and Spatial Planning. 4:185-190.
Kapfer J, Birks HJB, Felde VA, Klanderud K, Martinessen T, Ross LC, Schei FH, Virtanen R, Grytnes JA.  2013.  Long-term vegetation stability in northern Europe as assessed by changes in species co-occurrences. Plant Ecology and Biodiversity. 6:289-302.
White PJ, George TS, Gregory PJ, Bengough AG, Hallett PD, McKenzie BM.  2013.  Matching roots to their environment. Annals of Botany. 112:207-222.
Cubitt MF, Hedley PE, Williamson NR, Morris JA, Campbell E, Toth IK, Salmond GPC.  2013.  A metabolic regulator modulates virulence and quorum sensing signal production in Pectobacterium atrosepticum. Molecular Plant Microbe Interactions. 26:356-366.
Mayor DJ, Gray NB, Elver-Evans J, Midwood AJ, Thornton B.  2013.  Metal-macrofauna interactions determine microbial community structure and function in copper contaminated sediments. PLoS ONE. 8:e64940.
Bryce R, van der Wal R, Mitchell R, Lambin X.  2013.  Metapopulation dynamics of a burrowing herbivore drive spatio-temporal dynamics of riparian plant communities. Ecosystems. 16:1165-1177.
van der Heijden GA, Legout A, Midwood AJ, Craig CA, Pollier B, Ranger J, Dambrine E.  2013.  Mg and Ca root uptake and vertical transfer in soils assessed by an in situ ecosystem scale multi-isotopic (26Mg & 44Ca) tracing experiment in a beech stand (Breuil-Chenue, France). Plant and Soil. 369:33-45.
Roberts WM, Matthews RA, Blackwell MSA, Peukert S, Collins AL, Stutter MI, Haygarth PM.  2013.  Microbial biomass phosphorus contributions to phosphorus solubility in riparian vegetated buffer strip soils. Biology and Fertility of Soils. 49:1237-1241.
Dungait JAJ, Ghee C, Rowan JS, McKenzie BM, Hawes C, Dixon ER, Paterson E, Hopkins DW.  2013.  Microbial responses to the erosional redistribution of soil organic carbon in arable fields. Soil Biology and Biochemistry. 60:195-201.
Smith SW, Robertson AHJ, Meharg AA, Pakeman RJ, Johnson D, Woodin SJ, van der Wal R.  2013.  Milling plant and soil material in plastic tubes over-estimates carbon and under-estimates nitrogen concentrations. Plant and Soil. 369:509-513.
Flynn KJ, Stoecker DK, Mitra A, Raven JA, Glibert PM, Hansen PJ, Graneli E, Burkholder JM.  2013.  Misuse of the phytoplanktonzooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types. Journal of Plankton Research. 35:3-11.
Kragt ME, Robson BJ, Macleod CJA.  2013.  Modellers' roles in structuring integrative research projects. Environmental Modelling and Software. 39:322-330.
Elledge AE, McAlpine CA, Murray PJ, Gordon IJ.  2013.  Modelling habitat preferences of feral pigs for rooting in lowland rainforest. Biological Invasions. 15:1523-1535.
Fox NJ, Marion G, Davidson RS, White PCL, Hutchings MR.  2013.  Modelling parasite transmission in a grazing system: the importance of host behaviour and immunity. PLoS ONE. 8:e77996.
Hardstaff JL, Bulling MT, Marion G, Hutchings MR, White PCL.  2013.  Modelling the impact of vaccination on tuberculosis in badgers. Epidemiology and Infection. 141:1417-1427.
Tavares LR, Figueira I, McDougall GJ, Vieira HLA, Stewart D, Alves PM, Ferreira RB, Santos CN.  2013.  Neuroprotective effects of digested polyphenols from wild blackberry species. European Journal of Nutrition. 52:225-236.
Rees RM, Baddeley JA, Bhogal A, Ball BC, Chadwick DR, MacLeod M, Lilly A, Pappa VA, Thorman RE, Watson CA et al..  2013.  Nitrous oxide mitigation in UK agriculture. Soil Science and Plant Nutrition.. 59:3-15.
Perry JN, Arpaia S, Bartsch D, Birch ANE, Devos Y, Gathmann A, Gennaro A, Kiss J, Messean A, Mestdagh S et al..  2013.  No evidence requiring change in the risk assessment of Inachis io larvae. Ecological Modelling. 268:103-122.
Lavorel S, Storkey J, Bardgett RD, de Bello F, Berg MP, LeRoux X, Moretti M, Mulder C, Pakeman RJ, Diaz S et al..  2013.  A novel framework for linking functional diversity of plants with other trophic levels for the quantification of ecosystem services. Journal of Vegetation Science. 24:942-948.
Macleod CJA, Humphreys MW, Whalley WR, Turner L, Binley A, Watts CW, Skot L, Joynes A, Hawkins S, King IP et al..  2013.  A novel grass hybrid to reduce flood generation in temperate regions. Nature Scientific Reports, 3, Article no.1683..
Cocito S, Ferrier-Pages C, Cupido R, Rottier C, Meier-Augenstein W, Kemp HF, Reynaud S, Peirano A.  2013.  Nutrient acquisition in four Mediterranean gorgonian species. Marine Ecology Progress Series. 473:179-188.
Andersen R, Wells C, MacRae M, Price J.  2013.  Nutrient mineralisation and microbial functional diversity in a restored bog approach natural conditions 10 years post restoration. Soil Biology and Biochemistry. 64:37-47.
Hillier S, Marwa E, Rice C.  2013.  On the mechanism of exfoliation of "Vermiculite". Clay Minerals. 48:563-582.
Fischer A, Sandstrom C, Delibes-Mateos M, Arroyo B, Tadie D, Randall D, Hailu F, Lowassa A, Mshua M, Kerezi V et al..  2013.  On the multifunctionality of hunting - an institutional analysis of eight cases from Europe and Africa. Journal of Environmental Planning and Management. 56:531-552.
Carvalho A, Ribeiro H, Mayes R, Guedes A, Abreu I, Noronha F, Dawson LA.  2013.  Organic matter characterization of sediments in two river beaches from Northern Portugal for forensic application. Forensic Science International. 233:403-415.
Alday JG, Cox ES, Pakeman RJ, Harris MP, Le Duc MG, Marrs RH.  2013.  Overcoming resistance and resilience of an invaded community is necessary for effective restoration: a multi-site bracken control study. Journal of Applied Ecology. 50:156-167.
Arnold MFF, Haag AF, Capewell S, Boshoff HI, James EK, McDonald R, Mair I, Mitchell AM, Kerscher B, Mitchell TJ et al..  2013.  Partial complementation of Sinorhizobium meliloti bacA mutant phenotypes by the Mycobacterium tuberculosis BacA protein. Journal of Bacteriology. 195:389-398.
Martin-Ortega J, Ojea E, Roux C.  2013.  Payments for Water Ecosystem Services in Latin America: a literature review and conceptual model. Ecosystem Services. 6:122-132.
Suryawanshi KR, Bhatnagar YV, Redpath S, Mishra C.  2013.  People, predators and perceptions: patterns of livestock depredation by snow leopards and wolves. Journal of Applied Ecology. 50:550-560.
Hombach-Klonisch S, Danescu A, Begum F, Amezaga MR, Rhind SM, Sharpe RM, Evans NP, Bellingham M, Cotinot C, Mandon-Pepin B et al..  2013.  Peri-conceptional changes in maternal exposure to sewage sludge chemicals disturbs fetal thyroid gland development in sheep. Molecular and Cellular Endocrinology. 367:98-108.
Canton GJ, Katzer F, Benavides-Silvan J, Maley SW, Palarea-Albaladejo J, Pang Y, Smith S, Bartley PM, Rocchi M, Innes EA et al..  2013.  Phenotypic characterisation of the cellular immune infiltrate in placentas of cattle following experimental inoculation with Neospora caninum in late gestation. Veterinary Research. 44
Jupe J, Stam R, Howden AJM, Morris JA, Zhang R, Hedley PE, Huitema E.  2013.  Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle. Genome Biology. 14:R63.
Makarov V, Rakitina D, Protopopova A, Yaminsky I, Arutiunian A, Love AJ, Taliansky M, Kalinina N.  2013.  Plant coilin: structural characteristics and RNA-binding properties. PLoS ONE. 8:e53571.
Sainz M, Perez-Rontome C, Ramos J, Mulet J, James E, Bhattacharjee U, Petrich J, Becana M.  2013.  Plant hemoglobins can be maintained in functional form by reduced flavins in the nuclei and confer differential tolerance to nitro-oxidative stress. The Plant Journal. 76:875-887.
Mladek J, Mladkova P, Hehcmanova P, Dvorsky M, Pavlu V, de Bello F, Duchoslav M, Hejeman M, Pakeman RJ.  2013.  Plant trait assembly affects superiority of grazer's foraging strategies in species-rich grasslands. PLoS ONE. 8:e69800.
Dahlawi H, Jordan-Mahy N, Clench M, McDougall GJ, Le Maitre CL.  2013.  Polyphenols are responsible for the pro-apoptotic properties of pemegranate juice on leukemia cell lines. Food Science & Nutrition. 1:196-208.
Mansour E, Casas AM, Gracia MP, Molina-Cano JL, Moralejo M, Cattivelli L, Thomas WTB, Igartua E.  2013.  Quantitative trait loci for agronomic traits in an elite barley population for Mediterranean conditions. Molecular Breeding. 33:249-265.
McGeoch SC, Johnstone AM, Lobley GE, Adamson J, Hickson K, Holtrop G, Fyfe C, Clark LF, Pearson DWM, Abraham P et al..  2013.  A randomized crossover study to assess the effect of an oat-rich diet on glycaemic control, plasma lipids and postprandial glycaemia, inflammation and oxidative stress in Type 2 diabetes. Diabetic Medicine. 30:1314-1323.
Kildea S, Quinn L, Mehenni-Ciz J, Cooke DEL, Perez FM, Deahl KL, Griffin D, Cooke LR.  2013.  Re-emergence of the Ib mitochondrial haplotype within the British and Irish Phytophthora infestans populations. European Journal of Plant Pathology. 135:237-242.
Critchley CNR, Mitchell RJ, Rose RJ, Griffiths JB, Jackson E, Scott H, Davies OD.  2013.  Re-establishment of Calluna vulgaris (L.) Hull in an eight-year grazing experiment on upland acid grassland. Journal of Nature Conservation. 21:22-30.
McKenzie SW, Vanbergen AJ, Hails RS, Jones TH, Johnson SN.  2013.  Reciprocal feeding facilitation between above- and below-ground herbivores. Biology Letters. 9
Matthews KB, Buchan K, Miller DG, Towers W.  2013.  Reforming the CAP - with area-based Pillar 1 payments, who wins and who loses? Land Use Policy. 31:209-222.
Hunter LJR, Westwood JH, Heath G, Macaulay K, Smith AG, MacFarlane SA, Palukaitis P, Carr JP.  2013.  Regulation of RNA-dependent RNA polymerase 1 and isochorismate synthase gene expression in arabidopsis. PLoS ONE. 8:e66530.
Coutinho BG, Mitter B, Talbi C, Sessitsch A, Bedmar E, Halliday N, James EK, Camara M, Venturi V.  2013.  Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. Applied and Environmental Microbiology. 79:4421-4432.
Kammer PM, Schoeb C, Eberhard G, Gallina R, Meyer R, Tschanz C.  2013.  The relationship between soil water storage capacity and plant species diversity in high alpine vegetation. Plant Ecology and Diversity. 6:457-466.
Gushchin VA, Andreev DE, Taliansky M, MacFarlane SA, Solovyev AG, Morozov SY.  2013.  Replacement of amino acid in the ORF6 protein of tobacco mosaic virus prevents the formation of a complex with eEF1A and the cooperative binding to nucleic acids in vitro. Proceedings of the Russian Academy of Sciences. 448:1-5.
Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, MacLean D, Cock PJ, Leggett RM, Bryan GJ et al..  2013.  Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. Plant Journal. 76:530-544.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2013.  The response of alpine Salix shrubs to long-term experimental browsing varies with elevation and herbivore density. Arctic Antarctic and Alpine Research. 45:584-593.
Mikusinska A, Persson T, Taylor AFS, Ekblad A.  2013.  Response of ectomycorrhizal extramatrical mycelium production and isotopic composition to in-growth bag size and soil fauna. Soil Biology and Biochemistry. 66:154-162.
Lyons R, Iwase A, Gansewig T, Sherstnev A, Duc C, Barton GJ, Hanada K, Higuchi-Takeuchi M, Matsui M, Sugimoto K et al..  2013.  The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation. Scientific Reports. 3
Pasare SA, Ducreux LJM, Morris WL, Campbell R, Sharma SK, Roumeliotis E, Kohlen W, van der Krol S, Bramley PM, Roberts AG et al..  2013.  The role of the potato (Solanum tuberosum L.) CCD8 gene in stolon and tuber development. New Phytologist. 198:1108-1120.
McKenzie BM, Mullins CE, Tisdall JM, Bengough AG.  2013.  Root-soil friction: quantification provides evidence for measurable benefits for manipulation of root-tip traits. Plant Cell and Environment. 36:1085-1092.
McLellan H, Boevink PC, Armstrong MR, Pritchard L, Gomez S, Morales J, Whisson SC, Beynon JL, Birch PRJ.  2013.  An RxLR effector from Phytophthora infestans prevents re-localisation of two plant NAC transcription factors from the endoplasmic reticulum to the nucleus. PLoS Pathogens. 9:e1003670.
Juedtz K, Aberdein N, Stewart D, McDougall GJ.  2013.  Sequential extraction of black currant residues produce anthocyanin-rich extracts containing anthocyanin dimers. Journal of Berry Research. 3:53-64.
Rhind SM, Kyle CE, Ruffie H, Calmettes E, Osprey M, Zhang ZL, Hamilton D, McKenzie C.  2013.  Short and long term temporal changes in soil concentrations of selected endocrine disrupting compounds (EDCs) following single or multiple applications of sewage sludge to pastures. Environmental Pollution. 181:262-270.
McNicol J.  2013.  Significance testing after analysis of variance. Annals of Applied Biology. 162:288-289.
Palacio S, Hester AJ, Maestro M, Millard P.  2013.  Simulated browsing affects leaf shedding phenology and litter quality of oak and birch saplings. Tree Physiology. 33:438-445.
Gushchin VA, Andreev DE, Taliansky ME, MacFarlane SE, Solovyev AG, Morozov SY.  2013.  Single amino acid substitution in the tobacco mosaic virus ORF6 protein suppresses formation of complex with eEF1A and cooperative nucleic acids binding in vitro. Doklady Biochemistry and Biophysics. 448:1-4.
Cheke RA, Adranyi E, Cox JR, Farman DI, Magoma RN, Mbereki C, McWilliam AN, Mtobesya BN, van der Walte E.  2013.  Soil contamination and persistence of pollutants following organophosphate sprays and explosions to control red-billed quelea (Quelea quelea). Pest Management Science. 69:386-396.
Bragard C, Caciagli P, Lemaire O, Lopez-Moya JJ, MacFarlane S, Peters D, Susi P, Torrance L.  2013.  Status and prospects of plant virus control through interference with vector transmission. Annual Review of Phytopathology, 51,177-201.. 51:177-201.
Tondelli A, Xu X, Moragues M, Sharma R, Schnaithmann F, Ingvardsen C, Manninen O, Comadran J, Russell J, Waugh R et al..  2013.  Structural and temporal variation in genetic diversity of European spring two-row barley cultivars and association mapping of quantitative traits. Plant Genome. 6
Askarianzadeh A, Birch ANE, Ramsay G, Minaeimoghadam M.  2013.  Study of wild Solanum species to identify sources of resistance against the green peach aphid, Myzus persicae (Sulzer). American Journal of Potato Research.. 90:66-70.
Pasare S, Wright K, Campbell R, Morris WL, Ducreux LJM, Chapman S, Bramley PM, Fraser PD, Roberts AG, Taylor MA.  2013.  The sub-cellular localisation of the potato (Solanum tuberosum L.) carotenoid biosynthetic enzymes, CrtRb2 and PSY2. Protoplasma. 250:1381-1392.
Sargent F, Davidson FA, Kelly CL, Binny R, Christodoulides N, Gibson D, Johansson E, Kozyrska K, Lado LL, MacCallum J et al..  2013.  A synthetic system for expression of components of a bacterial microcompartment. Microbiology-SGM. 159:2427-2436.
Dresboll DB, Thorup-Kristensen K, McKenzie BM, Dupuy LX, Bengough AG.  2013.  Timelapse scanning reveals spatial variation in tomato (Solanum lycopersicum L.) root elongation rates during partial waterlogging. Plant and Soil. 369:467-477.
Jones JT, Haegeman A, Danchin EGJ, Gaur HS, Helder J, Jones MGK, Kikuchi T, Manzanilla-Lopez R, Palomares-Rius JE, Wesemael WML et al..  2013.  Top 10 plant parasitic nematodes in molecular plant pathology. Molecular Plant Pathology. 14:946-961.
Wells B, Innocent GT, Eckersall PD, McCulloch E, Nisbet AJ, Burgess STG.  2013.  Two major ruminant acute phase proteins, haptoglobin and serum amyloid A, as serum biomarkers during active sheep scab infestation. Veterinary Research. 44:103.
Mosher S, Seybold H, Rodriguez PA, Stahl M, Davies KA, Davaratne S, Morillo SA, Wierzba M, Favery B, Keller H et al..  2013.  The tyrosine-sulfated peptide receptors PSKR1 and PST1R modify the immunity of Arabidopsis to biotrophic and necrotrophic pathogens in an antagonistic manner. The Plant Journal. 73:469-482.
Peukert S, Bol R, Roberts W, Macleod CJA, Murray PJ, Dixon ER, Brazier RE.  2013.  Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments (vol 26, pg 2413, 2012). (Correction). Rapid Communications in Mass Spectrometry. 27:284.
Thuenemann EC, Lenzi P, Love AJ, Taliansky M, Becares M, Zuniga S, Enjuanes L, Zahmanova GG, Minkov IN, Matic S et al..  2013.  The use of transient expression systems for the rapid production of virus-like particles in plants. Current Pharmaceutical Design. 19:5564-5573.
Milne I, Stephen G, Bayer MM, Cock PJA, Pritchard L, Cardle L, Shaw P, Marshall DF.  2013.  Using Tablet for visual exploration of second generation sequencing data. Briefings in Bioinformatics. 14:193-202.
Palarea-Albaladejo J, Martin-Fernandez JA.  2013.  Values below detection limit in compositional chemical data. Analytica Chimica Acta. 764:32-43.
Houston K, McKim S, Comadran J, Bonar N, Druka I, Uzrek E, Cirillo E, Guzy-Wrobelska J, Collins N, Halpin C et al..  2013.  Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence. Proceedings of the National Academy of Sciences of the USA. 110:16675-16680.
Martin RR, MacFarlane S, Sabanadzovic S, Quito D, Poudel B, Tzanetakis IE.  2013.  Viruses and virus diseases of Rubus. Plant Disease. 97:168-182.
Kerchev PI, Karpinska B, Morris JA, Hussain A, Verrall SR, Hedley PE, Fenton B, Foyer CH, Hancock RD.  2013.  Vitamin C and the abscisic acid-insensitive 4 transcription factor are important determinants of aphid resistance in arabidopsis. Antioxidants and Redox Signalling. 18:2091-2105.
Haggarty P, Campbell DM, Knox S, Horgan GW, Hoad G, Boulton E, McNeill G, Wallace AM.  2013.  Vitamin D in pregnancy at high latitude in Scotland. British Journal of Nutrition. 109:898-905.
Marselle MR, Irvine KN, Warber SL.  2013.  Walking for well-being: are group walks in certain types of natural environments better for well-being than group walks in urban environments? International Journal of Environmental Research and Public Health. 10:5603-5628.
2012
Jackson G, Macdonald LM, Brewer MJ, Dawson LA.  2012.  A conceptual framework for expert opinions in forensic geoscience. Science and Justice.
Koichi K, Mayer R, Kaur K, Cottrell AA, Gordon IJ.  2012.  Aboriginal rangers' perspectives on feral pigs: are they a pest or a resource? A case study in the wet tropics world heritage area of Northern Queensland Journal of Australian Indigenous Issues. 15:2-19.
Johnson SN, Clark KE, Hartley SE, Jones TH, McKenzie SW, Koricheva J.  2012.  Aboveground-belowground herbivore interactions: a meta-analysis. Ecology. 93:2208-2215.
Raven JA, Giordano M, Beardall J, Maberly SC.  2012.  Algal evolution in relation to atmospheric CO2: carboxylases, carbon-concentrating mechanisms and carbon oxidation cycles. Philosophical Transactions of the Royal Society, B. 367:493-507.
Rodriguez-Gutierrez G, Duthie GG, Wood S, Morrice P, Nicol F, Reid M, Cantlay LL, Kelder T, Horgan GW, Fernandez-Bolanos Guzman J et al..  2012.  Alperujo extract, hydroxytyrosol, and 3,4-dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin e-deficient ratsua proteomics and network analysis approach. Molecular Nutrition and Food Research. 56:1131-1147.
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol JW et al..  2012.  Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Research. 40:2454-2469.
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JWS.  2012.  Alternative splicing in plants - coming of age. Trends in Plant Science. 17:616-623.
James A, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JWS, Nimmo HG.  2012.  Alternative splicing mediates responses of the Arabidopsis thaliana circadian clock to temperature changes. The Plant Cell. 24:961-981.
Houston K, Druka A, Bonar N, Macaulay M, Lundqvist U, Franckowiak JD, Morgante M, Stein N, Waugh R.  2012.  Analysis of the barley bract suppression gene Trd1. Theoretical and Applied Genetics. 125:33-45.
De Smet I, White PJ, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F et al..  2012.  Analyzing lateral root development: how to move forward. The Plant Cell. 24:15-20.
Morenoa FC, Gordon IJ, Knox MR, Summer PM, Skerrat LF, Benvenutti MA, Saumell CA.  2012.  Anthelmintic efficacy of five tropical native Australian plants against Haemonchus contortus and Trichostrongylus colubriformis in experimentally infected goats (Capra hircus). Veterinary Parasitology. 187:237-243.
Vinten AJA, Martin-Ortega J, Glenk K, Booth P, Balana BB, MacLeod M, Lago M, Moran D, Jones M.  2012.  Application of the WFD cost proportionality principle to diffuse pollution mitigation: a case study for Scottish Lochs. Journal of Environmental Management. 97:28-37.
Minh ND, Hough RL, Thuy LT, Nyberg Y, Mai LB, Vinh NC, Khai NM, Oborn I.  2012.  Assessing dietary exposure to cadmium in a metal recycling community in Vietnam: age and gender aspects. Science of the Total Environment. 416:164-171.
Berbel J, Kolberg S, Martin-Ortega J.  2012.  Assessment of the draft hydrological basin plan of the Guadalquivir River Basin (Spain). Water Resources Development.. 28:43-55.
MacKenzie K, Hackett CA.  2012.  Association mapping in a simulated barley population. Euphytica. 183:337-347.
Jordan MO, Wendler R, Millard P.  2012.  Autumnal N storage determines the spring growth, N uptake and N internal cycling of young peach trees. Trees - Structure and Function. 26:393-404.
Thomas CR, Gordon IJ, Wooldridge S, Marshall P.  2012.  Balancing the trade-offs between ecological and economic risks in the Great Barrier Reef: a pragmatic conceptual framework. Human and Ecological Risk Assessment.. 18:69-91.
Martin-Ortega J, Brouwer R, Ojea E, Berbel J.  2012.  Benefit transfer and spatial heterogeneity of preferences for water quality improvements. Journal of Environmental Management. 106:22-29.
Boath AS, Grussu D, Stewart D, McDougall GJ.  2012.  Berry polyphenols inhibit digestive enzymes: a source of potential health benefits? Food Digestion. 3:1-7.
Linder HP, Bykova O, Dyke J, Etienne RS, Hickler T, Kuehn I, Marion G, Ohlemueller R, Schymanski SJ, Singer A.  2012.  Biotic modifiers, environmental modulation and species distribution models. Journal of Biogeography. 39:2179-2190.
Love AJ, Geri C, Laird J, Carr C, Yun BW, Loake GJ, Tada Y, Sadanandom A, Milner JJ.  2012.  Cauliflower mosaic virus protein P6 inhibits signaling responses to salicylic acid and regulates innate immunity. PLoS One. 7:e47535.
Logie L, Harthill J, Patel K, Bacon S, Hamilton DL, Macrae K, McDougall GJ, Wang HH, Xue L, Jiang H et al..  2012.  Cellular responses to the metal-binding properties of metformin. Diabetes. 61:1423-1433.
Valdes Y, Viaene N, Blok V, Palomares-Rius JE, Moens M.  2012.  Changes in the pre-parasitic developmental stage of Globodera rostochiensis in response to green manures. Nematology. 14:925-932.
Brittain SR, Cox AG, Tomos AD, Paterson E, Siripinyanond A, McLeod CW.  2012.  Chemical speciation studies on DU contaminated soils using flow field flow fractionation linked to inductively coupled plasma mass spectrometry (FIFFF-ICP-MS). Journal of Environmental Monitoring. 14:782-790.
Alizai A, Hillier S, Clift PD, Giosan L, Hurst A, VanLaningham S, Macklin M.  2012.  Clay mineral variations in holocene terrestrial sediments from the Indus Basin. Quaternary Research. 77:368-381.
Fischer A, Peters V, Neebe M, Vavra J, Kriel A, Lapka M, Megyesi B.  2012.  Climate change? No, wise resource use is the issue: social representations of energy, climate change and the future Environmental Policy and Governance. 22:161-176.
Fridley JD, Grime JP, Huston MA, Pierce S, Smart SM, Thompson K, Boerger L, Brooker RW, Cerabolini BEL, Gross N et al..  2012.  Comment on "Productivity Is a Poor Predictor of Plant Species Richness". Science. 335:1441.
Suarez-Moreno ZR, Caballero-Mellado J, Coutinho BG, Mendonca-Previato L, James EK, Venturi V.  2012.  Common features of environmental and potentially beneficial plant-associated Burkholderia. Microbial Ecology. 63:249-266.
Krueger T, Quinton JN, Freer J, Macleod CJA, Bilotta GS, Brazier RE, Hawkins JMB, Haygarth PM.  2012.  Comparing empirical models for sediment and phosphorus transfer from soils to water at field and catchment scale under data uncertainty. European Journal of Soil Science. 63:221-223.
Palomares-Rius JE, Hedley PE, Cock PJA, Morris JA, Jones JT, Vovlas N, Blok V.  2012.  Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. Molecular Plant Pathology. 13:1120-1134.
Langkilde S, Schroder M, Frank T, Shepherd LVT, Conner S, Davies HV, Meyer O, Danier J, Rychlik M, Belknap WR et al..  2012.  Compositional and toxicological analysis of a GM potato line with reduced alpha-solanine content - A 90-day feeding study in the Syrian Golden hamster. Food and Chemical Toxicology. 64:177-185.
Vergara P, Mougeot F, Martinez-Padilla, J.; Millan J, Leckie F, Redpath SM.  2012.  The condition dependence of a secondary sexual trait is stronger under high parasite infection level. Behavioural Ecology. 23:502-511.
Balana BB, Muys B, Haregeweyn N, Descheemaeker K, Deckers J, Poesen J, Nyssen J, Mathijs E.  2012.  Cost-benefit analysis of soil and water conservation measures: The case of exclosures in northern Ethiopia. Forest Policy and Economics. 15:27-36.
Bakam I, Balana BB, Matthews RB.  2012.  Cost-effectiveness analysis of policy instruments for greenhouse gas emission mitigation in the agricultural sector. Journal of Environmental Management. 112:33-44.
Martin-Ortega J, Gonzalez-Eguino M, Markandya A.  2012.  The costs of drought: the 2007-2008 case of Barcelona. Water Policy. 14:539-560.
Deffuant G, Alvarez I, Barreteau O, de Vries B, Edmonds B, Gilbert N, Gotts N, Jabot F, Janssen S, Hilden M et al..  2012.  Data and models for exploring sustainability of human well-being in global environmental change. European Physical Journal Special Topics.. 214:519-545.
Ojea E, Martin-Ortega J, Chiabai A.  2012.  Defining and classifying ecosystem services for economic valuation: the case of forest water services. Environmental Science and Policy. 19-20:1-15.
Meier-Augenstein W, Kemp HF, Hardie SML.  2012.  Detection of counterfeit Scotch whisky by H-2 and O-18 stable isotope analysis. Food Chemistry. 133:1070-1074.
McCallum S, Woodhead M, Jorgensen L, Gordon SL, Brennan RM, Graham J, Hackett CA, Rowland LJ, Hancock JF, Olmstead JW et al..  2012.  Developing tools for long term breeding of blueberry germplasm for UK production. International Journal of Fruit Science. 12:294-303.
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Lockyer AE, Emery AM, Kane RA, Walker AJ, Mayer CD, Mitta G, Coustau C, Adema CM, Hanelt B, Rollinson D et al..  2012.  Early differential gene expression in haemocytes from resistant and susceptible biomphalaria glabrata strains in response to schistosoma mansoni. PLoS ONE, e511020. 7
Martin-Ortega J.  2012.  Economic prescriptions and policy applications in the implementation of the Water Framework Directive. Environmental Science and Policy. 24:83-91.
Mesa-Jurado MA, Martin-Ortega J, Ruto E, Berbel J.  2012.  The economic value of guaranteed water supply for irrigation under scarcity conditions. Agricultural Water Management. 113:10-18.
Thies F, Masson LF, Rudd A, Vaughan N, Tsang C, Brittenden J, Simpson WG, Duthie S, Horgan GW, Duthie G.  2012.  Effect of a tomato-rich diet on markers of cardiovascular disease risk in moderately overweight, disease-free, middle-aged adults: a randomized controlled trial. American Journal of Clinical Nutrition. 95:1013-1022.
Gilbert L, Maffey G, Ramsay SL, Hester AJ.  2012.  The effect of deer management on the abundance of Ixodes ricinus in Scotland. Ecological Applications. 22:658-667.
Zebarth BJ, Tai H, Luo SN, Millard P, De Koeyer D, Li XQ, Xiong XY.  2012.  Effect of nitrogen form on gene expression in leaf tissue of greenhouse grown potatoes during three stages of growth. American Journal of Potato Research. 89:315-327.
Bachmair E, Bots ML, Mennen LI, Kelder T, Evelo CT, Horgan GW, Ford I, de Roos B.  2012.  Effect of supplementation with an 80:20 cis9, trans11 conjugated linoleic acid blend on the human platelet proteome. Molecular Nutrition and Food Research. 56:1148-1159.
Macleod CJA, Falloon PD, Evans R, Haygarth PM.  2012.  The effects of climate change on the mobilization of diffuse substances from agricultural systems. Advances in Agronomy. 115:41-77.
Clark KE, Hartley SE, Brennan RM, Jennings SN, McMenemy LS, McNicol JW, Mitchell C, Johnson SN.  2012.  Effects of cultivar and egg density on a colonizing vine weevil (Otiorhynchus sulcatus) population and its impacts on red raspberry growth and yield. Crop Protection. 32:76-82.
Cheke RA, McWilliam AN, Mbereki C, van der Walt E, Mtobesya B, Magoma RN, Young S, Eberly JP.  2012.  Effects of the organophosphate fenthion for control of the red-billed quelea Quelea quelea on cholinesterase and haemoglobin concentrations in the blood of target and non-target birds. Ecotoxicology. 21:1761-1770.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2012.  Elevational advance of alpine plant communities is buffered by herbivory. Journal of Vegetation Science. 23:617-625.
Alcon F, Martin-Ortega J, Berbel J, de Miguel MD.  2012.  Environmental benefits of reclaimed water: an economic assessment in the context of the Water Framework Directive. Water Policy. 14:148-159.
Vergara P, Redpath SM, Martinez-Padilla, J.; Millan J, Mougeot F.  2012.  Environmental conditions influence red grouse ornamentation at a population level. Biological Journal of the Linnean Society. 107:788-798.
Vergara P, Martinez-Padilla, J.; Millan J, Mougeot F, Leckie F, Redpath SM.  2012.  Environmental heterogeneity influences the reliability of secondary sexual traits as condition indicators. Journal of Evoluationary Biology. 25:20-28.
Yelina NE, Choi K, Chelysheva L, Macaulay M, de Snoo B, Wijnker E, Miller N, Drouaud J, Grelon M, Copenhaver GP et al..  2012.  Epigenetic remodeling of meiotic crossover frequency in arabidopsis thaliana DNA methyltransferase mutants. PLoS Genetics. 8:e1002844.
Bakam I, Pajot G, Matthews RB.  2012.  Estimating carbon price from a closed emission trading scheme in the agricultural sector. Journal of Land Use Science. 6:1-18.
Shibu ME, Matthews RB, Bakam I, Moffat AJ, Baggaley NJ.  2012.  Estimating greenhouse gas abatement potential of biomass crops in Scotland under various management options. Biomass and Bioenergy. 47:211-227.
Minet E, Coxon CE, Goodhue R, Richards KG, Kalin RM, Meier-Augenstein W.  2012.  Evaluating the utility of N-15 and O-18 isotope abundance analyses to identify nitrate sources: a soil zone study. Water Research. 46:3723-3736.
Schultz L, Cogan NOI, McLean K, Dale MFB, Bryan GJ, Forster JW, Slater AT.  2012.  Evaluation and implementation of a potential diagnostic molecular marker for H1-conferred potato cyst nematode resistance in potato (Solanum tuberosum L.). Plant Breeding. 131:315-321.
Ferreira LMM, Celaya R, Santos AS, Guedes CMV, Rodrigues MAM, Mayes RW, Osoro K.  2012.  Evaluation of long-chain alcohols as diet composition markers in goats grazing heathland areas. Animal. 6:683-0692.
Adriaens ME, Jaillard M, Eijssen LMT, Mayer C, Evelo CTA.  2012.  An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies. BMC Genomics. 13:42-42.
Mitchell RJ, Hester AJ, Campbell CD, Chapman SJ, Cameron CM, Hewison RL, Potts JM.  2012.  Explaining the variation in the soil microbial community: do vegetation composition and soil chemistry explain the same or different parts of the microbial variation? Plant and Soil. 351:355-362.
Devos Y, Hails RS, Messean A, Perry JN, Squire GR.  2012.  Feral genetically modified herbicide tolerant oilseed rape from seed import spills: are concerns scientifically justified? Transgenic Research. 21:1-21.
Meharg AA, Edwards KJ, Schofield JE, Raab A, Feldmann J, Moran A, Bryant CL, Thornton B, Dawson JJC.  2012.  First comprehensive peat depositional records for tin, lead and copper associated with the antiquity of Europe’s largest cassiterite deposits. Journal of Archaeological Science. 39:717-727.
Worrall F, Davies H, Bhogal A, Lilly A, Evans M, Turner K, Burt T, Barraclough D, Smith P, Merrington G.  2012.  The flux of DOC from the UK - predicting the role of soils, land use and net watershed losses. Journal of Hydrology. 448-449:149-150.
Bellingham M, McKinnell C, Fowler PA, Amezaga MR, Zhang Z, Rhind SM, Cotinot C, Mandon-Pepin B, Evans NP, Sharpe RM.  2012.  Foetal and post-natal exposure of sheep to sewage sludge chemicals disrupts sperm production in adulthood in a subset of animals. International Journal of Andrology. 35:317-329.
Torronen R, McDougall GJ, Dobson G, Stewart D, Hellström J, Mattila P, Pihlava JM, Karjalainen RO.  2012.  Fortification of blackcurrant juice with crowberry: impact on polyphenol composition, urinary phenoloic metabolites, and postprandial glycemic response in healthy subjects. Journal of Functional Foods. 4:746-756.
Haegeman A, Mantelin S, Jones JT, Gheysen G.  2012.  Functional roles of effectors of plant-parasitic nematodes. Gene. 492:19-31.
Rowland LJ, Bell D, Alkharouf N, Bassil N, Drummond F, Beers L, Buck E, Finn C, Graham J, McCallum S et al..  2012.  Generating genomic tools for blueberry improvement. International Journal of Fruit Science. 12:276-287.
Looseley M, Newton AC, Atkins SD, Fitt BDL, Fraaije BA, Thomas WTB, Keith R, Macaulay M, Lynott JS, Harrap D.  2012.  Genetic basis of control of Rhynchosporium secalis infection and symptom expression in barley. Euphytica. 184:47-56.
McNally RR, Toth IK, Cock PJA, Pritchard L, Hedley PE, Morris JA, Zhao YF, Sundin GW.  2012.  Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. Molecular Plant Pathology. 13:160-173.
Pelser PB, Abbott RJ, Comes HP, Milton JJ, Moller M, Looseley ME, Cron GV, Barcelona JF, Kennedy AH, Watson LE et al..  2012.  The genetic ghost of an invasion past: colonization and extinction revealed by historical hybridisation in Senecio. Molecular Ecology. 21:369-387.
Cooke DEL, Cano LM, Raffaele S, Bain RA, Cooke LR, Etherington GJ, Deahl KL, Farrer RA, Gilroy EM, Goss EM et al..  2012.  Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathogens. 8:e1002940.
Lamour KH, Mudge J, Gobena D, Hurtado-Gonzales OP, Schmutz J, Kuo A, Miller NA, Rice BJ, Raffaele S, Cano LM et al..  2012.  Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen phytophthora capsici. Molecular Plant-Microbe Interactions. 25:1350-1360.
Limpens J, Granath G, Aerts R, Heijmans MMPD, Sheppard LJ, Bragazza L, Williams BL, Rydin H, Bubier J, Moore T et al..  2012.  Glasshouse vs field experiments: do they yield ecologically similar results for assessing N impacts on peat mosses? New Phytologist. 195:408-418.
Benavides J, Katzer F, Maley SW, Bartley PM, Canton G, Palarea-Albaladejo J, Purslow CA, Pang Y, Rocchi MS, Chianini F et al..  2012.  High rate of transplacental infection and transmission of Neospora caninum following experimental challenge of cattle at day 210 of gestation. Veterinary Research. 43:83.
Wawra S, Bain J, Durward E, de Bruijn I, Minor KL, Matena A, Lobach L, Whisson SC, Bayer P, Porter AJ et al..  2012.  Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner. Proceedings of the National Academy of Sciences. 109:2096-2101.
Buckland ST, Baillie SR, Dick JM, Elston DA, Magurran AE, Scott EM, Smith RI, Somerfield PJ, Studeny AC, Watt A.  2012.  How should regional biodiversity be monitored? Environmental and Ecological Statistics. 19:601-626.
Jupe F, Pritchard L, Etherington G, MacKenzie K, Cock PJA, Wright F, Sharma SK, Bolser D, Bryan GJ, Jones J et al..  2012.  Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics. 13:1-14.
Hardstaff JL, Bulling MT, Marion G, Hutchings MR, White PCL.  2012.  Impact of external sources of infection on the dynamics of bovine tuberculosis in modelled badger populations. BMC Veterinary Research. 8:92.
McLaggan D, Amezaga MR, Petra E, Frost A, Duff EI, Rhind SM, Fowler PA, Glover LA, Lagido C.  2012.  Impact of sublethal levels of environmental pollutants found in sewage sludge on a novel Caenorhabditis elegans model biosensor. PLoS ONE. 7:e46503.
Purse BV, Falconer D, Sullivan MJ, Carpenter S, Mellor PS, Piertney SB, Mordue AJ, Albon SD, Gunn GJ, Blackwell A.  2012.  Impacts of climate, host and landscape factors on Culicoides species in Scotland. Medical and Veterinary Entomology. 26:168-177.
Love AJ, Chapman SN, Matic S, Noris E, Lomonossoff GP, Taliansky ME.  2012.  In planta production of a candidate vaccine against bovine papillomavirus type 1. Planta. 236:1305-1313.
Zakhrabekova S, Gough SP, Braumann I, Muller AH, Lundqvist J, Ahmann K, Dockter C, Matyszczak I, Kurowska M, Druka A et al..  2012.  Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:4326-4331.
Dove H, Milne JA, Lamb CS, Sibbald AM, McCormack HA.  2012.  The influence of herbage mass and supplementary feeding on nutrient flows and animal performance in grazing, lactating ewes. Journal of Agricultural Science. 150:644-662.
Swanston JS, Middlefell-Williams J.  2012.  The influence of steep regime and germination period on the malting properties of some hull-less barley lines. Journal of the Institute of Brewing. 118:186-191.
Okello EJ, Leylabi R, McDougall GJ.  2012.  Inhibition of acetylcholinesterase by green and white tea and their simulated intestinal metabolites. Food and Function. 3:651-661.
Rungapamestry V, McMonagle J, Reynolds C, Rucklidge G, Reid M, Duncan G, Ross K, Horgan GW, Toomey S, Moloney AP et al..  2012.  Inter-organ proteomic analysis reveals insights into the molecular mechanisms underlying the anti-diabetic effects of cis-9, trans-11-conjugated linoleic acid in ob/ob mice. Journal of Fruit Science. 12:461-476.
Waylen KA, Fischer A, McGowan PJK, Milner-Gulland EJ.  2012.  Interactions between a collectivist culture and Buddhist teachings influence environmental concerns and behaviors, in the Republic of Kalmykia, Russia. Society and Natural Resources. 25:1118-1133.
Stott AW, Ahmadi BV, Dwyer CM, Kupiec B, Morgan-Davies C, Milne CE, Ringrose S, Goddard P, Phillips K, Waterhouse A.  2012.  Interactions between profit and welfare on extensive sheep farms. Animal Welfare. 21:57-64.
Clark KE, Hartley SE, Brennan RM, MacKenzie K, Johnson SN.  2012.  Investigating preference-performance relationships in aboveground-belowground life cycles: a laboratory and field study with the vine weevil (Otiorhynchus sulcatus). Bulletin of Entomological Research. 102:63-70.
Dyer GA, Matthews RB, Meyfroidt P.  2012.  Is there an ideal REDD+ program? An analysis of policy trade-offs at the local level PLoS ONE. 7:e52478.
Perez-Espona S, McLeod JE, Franks NR.  2012.  Landscape genetics of a top neotropical predator. Molecular Ecology. 21:5969-5985.
Blackstock KL, Waylen KA, Dunglinson J, Marshall KM.  2012.  Linking process to outcomes - internal and external criteria for a stakeholder involvement in River Basin Management Planning. Ecological Economics. 77:113-122.
Dobson G, Shrestha M, Hilz H, Karjalainen RO, McDougall GJ, Stewart D.  2012.  Lipophilic components in black currant seed and pomace extracts. European Journal of Lipid Science and Technology. 114:575-582.
Brooker RW, Matesanz S, Valladares F, Klotz S.  2012.  Long-term spatial pattern change in a semi-arid plant community: The role of climate and composition. Acta Oecologia. 45:8-15.
Hossain MS, Liao JQ, James EK, Sato S, Tabata S, Jurkiewicz A, Madsen LH, Stougaard J, Ross L, Szczyglowski K.  2012.  Lotus japonicus ARPC1 is required for rhizobial infection. Plant Physiology. 160:917-928.
Mann AN, O'Reilly-Wapstra JM, Iason GR, Sanson G, Davies NW, Tilyard P, Williams D, Potts BM.  2012.  Mammalian herbivores reveal marked genetic divergence between populations of an endangered plant species. Oikos. 121:268-276.
Cortada L, Mantelin S, Verdejo-Lucas S, Kaloshian I.  2012.  Marker analysis for detection of the Mi-1.2 resistance gene in tomato hybrid rootstocks and cultivars. Nematology. 14:631-642.
Bartley PM, Wright SE, Maley SW, Macaldowie CN, Nath M, Hamilton CM, Katzer F, Buxton D, Innes EA.  2012.  Maternal and foetal immune responses of cattle following an experimental challenge with Neospora caninum at day 70 of gestation. Veterinary Research. 43:38.
Brown EM, Gill CIR, McDougall GJ, Stewart D.  2012.  Mechanisms underlying the anti-proliferative effects of berry components in in vitro models of colon cancer. Current Pharmaceutical Biotechnology. 13:200-209.
Ward Thompson C, Roe J, Aspinall P, Mitchell R, Clow A, Miller DR.  2012.  More green space is linked to less stress in deprived communities: evidence from salivary cortisol patterns. Landscape and Urban Planning. 105:221-229.
Elliott GN, Thomas N, MacRae M, Campbell CD, Ogden ID, Singh BK.  2012.  Multiplex T-RFLP allows for increased target number and specificity: Detection of Salmonella enterica and six species of Listeria in a single test. PLoS One. 7:e43672.
Jones MA, Williams BA, McNicol JW, Simpson CG, Brown JWS, Harmer SL.  2012.  Mutation of Arabidopsis spliceosomal timekeeper locus 1 causes circadian clock defects. The Plant Cell. 24:4066-4082.
Comadran J, Kilian B, Russell JR, Ramsay L, Stein N, Ganal M, Shaw P, Bayer M, Thomas WTB, Marshall DF et al..  2012.  Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nature Genetics. 44:1388-1392.
Tavares LR, Figueira I, Macedo D, McDougall GJ, Leitao MC, Vieira HLA, Stewart D, Alves PM, Ferreira RB, Santos CN.  2012.  Neuroprotective effect of blackberry (Rubus sp.) polyphenols is potentiated after simulated gastronintestinal digestion. Food Chemistry. 131:1443-1452.
Tavares LR, McDougall GJ, Fortalezas S, Stewart D, Ferreira RB, Santos CN.  2012.  The neuroprotective potential of phenolic-enriched fractions from four juniperus species found in Portugal. Food Chemistry. 135:562-570.
Fonseca MB, Peix A, de Faria SM, Mateos PF, Rivera LP, Simoes-Araujo JL, Franca MGC, dos Santos Isias RM, Cruz C, Velazquez E et al..  2012.  Nodulation in Dimorphandra wilsonii Rizz. (Caesalpinioideae), a threatened species native to the Brazilian Cerrado. PLoS ONE. 7:e49520.
Old GH, Naden PS, Granger SJ, Bilotta GS, Brazier RE, Macleod CJA, Krueger T, Bol R, Hawkins JMB, Haygarth P et al..  2012.  A novel application of natural fluorescence to understand the sources and transport pathways of pollutants from livestock farming in small headwater catchments. Science of the Total Environment. 417:169-182.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.