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Swanson MM, Reavy B, Makarova KS, Cock PJ, Hopkins DW, Torrance L, Koonin EV, Taliansky M.  2012.  Novel bacteriophages containing a genome of another bacteriophage within their genomes. PLoS ONE. 7:e40683.
Withers PJA, May L, Jarvies HP, Jordan P, Doody D, Foy RH, Bechmann M, Cooksley SL, Dils R, Deal N.  2012.  Nutrient emissions to water from septic tank systems in rural catchments: uncertainties and implications for policy. Environmental Science and Policy.. 24:71-82.
Thonur L, Maley M, Gilray J, Crook T, Laming E, Turnbull D, Nath M, Willoughby K.  2012.  One-step multiplex real time RT-PCR for the detection of bovine respiratory syncytial virus, bovine herpesvirus 1 and bovine parainfluenza virus 3. BMC Veterinary Research. 8:37-37.
Dobson P, Graham J, Stewart D, Brennan RM, Hackett CA, McDougall GJ.  2012.  Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry. Journal of Agricultural and Food Chemistry. 60:5360-5366.
Mitchell RJ, Keith AM, Potts JM, Ross J, Reid E, Dawson LA.  2012.  Overstory and understory vegetation interact to alter soil community composition and activity. Plant and Soil. 352:65-84.
Clark KE, Hartley SE, Brennan RM, MacKenzie K, Johnson SN.  2012.  Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status. Agricultural and Forest Entomology. 14:157-163.
Marion G, McInerny GJ, Pagel J, Catterall S, Cook AR, Hartig F, O'Hara RB.  2012.  Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. Journal of Biogeography. 39:2225-2239.
Chase-Topping ME, Rosser T, Allison LJ, Courcier, Evans J, McKendrick IJ, Pearce MC, Handel I, Caprioli A, Karch H et al..  2012.  Pathogenic potential to humans of bovine Escherichia coli O26, Scotland. Emerging Infectious Diseases. 18:439-448.
Brown EM, McDougall GJ, Stewart D, Pereira Caro G, Gonzalez-Barrio R, Allsopp P, Magee P, Crozier A, Rowland I, Gill CIR.  2012.  Persistence of anticancer activity in berry extracts after simulated gastrointestinal digestion and colonic fermentation. PLoS ONE. 7:e49740.
Greer E, Martin AC, Pendle A, Colas I, Jones AME, Moore G, Shaw P.  2012.  The Ph1 locus suppresses Cdk2-type activity during premeiosis and meiosis in wheat. The Plant Cell. 24:152-162.
McIntosh FM, Maison N, Holtrop G, Young P, Stevens VJ, Ince J, Johnstone AM, Lobley GE, Flint HJ, Louis P.  2012.  Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ et al..  2012.  A physical, genetic and functional sequence assembly of the barley genome. Nature. 491:711-716.
Vinh NC, Oborn I, Ha PQ, Minh ND, Hough RL, Khai NM, Thuy LT.  2012.  Potential environment and public health risk due to contamination of heavy metals from industrial waste water in Lam Thao, Phu Tho, Vietnam. American Journal of Environmental Sciences. 8:71-78.
Merz U, Lees AK, Sullivan L, Schwarzel R, Hebeisen T, Kirk HG, Bouchek-Mechiche K, Hofferbert HR.  2012.  Powdery scab resistance in Solanum tuberosum: an assessment of cultivar x environment effect. Plant Pathology. 61:29-36.
Humphry RW, Bruelisauer F, McKendrick IJ, Nettleton PF, Gunn GJ.  2012.  Prevalence of antibodies to bovine viral diarrhoea virus in bulk tank milk and associated risk factors in Scottish dairy herds. Veterinary Record. 171:445..
Wheelhouse NM, Sait M, Aitchison K, Livingstone M, Wright F, McLean K, Inglis NF, Smith DGE, Longbottom D.  2012.  Processing of chlamydia abortus polymorphic membrane protein 18D during the chlamydial developmental cycle. PLoS ONE. 7:e49190.
Hughes V, Garcia-Sanchez A, Smith S, McLean K, Lainson A, Nath M, Stevenson K.  2012.  Proteome-determined type-specific proteins of Mycobacterium avium subspecies paratuberculosis. Veterinary Microbiology. 158:153-162.
Ryan CM, Hill T, Woollen E, Ghee C, Mitchard E, Cassells G, Grace J, Woodhouse IH, Williams M.  2012.  Quantifying small-scale deforestation and forest degradation in African woodlands using radar imagery. Global Change Biology. 18:243-257.
Denwood MJ, Love S, Innocent GT, Matthews L, McKendrick IJ, Hillary N, Smith A, Reid SWJ.  2012.  Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method. Veterinary Parasitology. 188:120-126.
Ponce-Molina LJ, Casas AM, Gracia MP, Silvar C, Mansour E, Thomas WTB, Schweizer G, Herz M, Igartua E.  2012.  Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross. Crop Science. 52:2469-2480.
McGavin WJ, Mitchell C, Cock PJA, Wright KM, MacFarlane SA.  2012.  Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA. Journal of General Virology. 93:430-437.
McMenemy LS, Hartley SE, MacFarlane SA, Karley AJ, Shepherd T, Johnson SN.  2012.  Raspberry viruses manipulate the behaviour of their insect vectors. Entomologia Experimentalis et Applicata. 144:56-68.
Stopher KV, Nussey DH, Clutton-Brock TH, Guinness F, Morris A, Pemberton JM.  2012.  Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer. Journal of Evolutionary Biology. 25:2457-2469.
Stutter MI, Shand CA, George TS, Blackwell MSA, Bol R, Mackay RL, Richardson AE, Condron LM, Turner BL, Haygrath PM.  2012.  Recovering phosphorus from soil - A root solution? Environmental Science and Technology. 46:1977-1978.
Haregeweyn N, Melese B, Tsunekawa A, Tsubo M, Meshesha D, Balana B.  2012.  Reservoir sedimentation and its mitigating strategies: a case study of Angereb reservoir (NW Ethiopia). Journal of Soil and Sediments. 12:291-305.
Mayor DJ, Thornton B, Hay S, Zuur AF, Nicol GW, McWilliam JM, Witte UFM.  2012.  Resource quality affects carbon cycling in deep-sea sediments. ISME Journal. 6:1740-1748.
Cole LJ, Brocklehurst S, McCracken DI, Harrison W, Robertson D.  2012.  Riparian field margins: their potential to enhance biodiversity in intensively managed grasslands. Insect Conservation and Diversity. 5:86-94.
Seresinhe T, Madushika SAC, Seresinhe Y, Lal PK, Orskov ER.  2012.  The role of free radicals in brassica-induced anaemia of sheep: an ESR spin trapping study. Asian-Australiasian Journal of Animal Sciences. 25:1404-1410.
Matthies E, Selge S, Klockner CA.  2012.  The role of parental behaviour for the development of behaviour specific environmental norms - the example of recycling and re-use behaviour. Journal of Environmental Psychology. 32:277-284.
Charkowski A, Blanco C, Condemine G, Expert D, Franza T, Hayes C, Hugouvieux-Cotte-Pattat N, Lopez Solanilla E, Low D, Moleleki L et al..  2012.  The role of secretion systems and small molecules in soft-rot enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50:425-449.
Graham SL, Millard P, Hunt JE, Rogers GND, Whitehead D.  2012.  Roots affect the response of heterotrophic soil respiration to temperature in tussock grass microcosms. Annals of Botany. 110:253-258.
Wooldridge S, Done T, Thomas C, Gordon IJ, Marshall P.  2012.  Safeguarding coastal coral communities on the central Great Barrier Reef (Australia) against climate change: realizable local and global actions. Climatic Change. 112:945-961.
Matthews R, de Pinto A.  2012.  Should REDD+ fund "sustainable intensification" as a means of reducing tropical deforestation? Carbon Management. 3:117-120.
Templer PH, Mack MC, Chapin FS, Christenson LM, Compton JE, Crook HD, Currie WS, Curtis CJ, Dail DB, D'Antonio CM et al..  2012.  Sinks for nitrogen inputs in terrestrial ecosystems: a meta-analysis of N-15 tracer field studies. Ecology. 93:1816-1829.
White PJ, Crawford J, Alvarez MCD, Moreno RG.  2012.  Soil management for sustainable agriculture (Editorial). Applied and Environmental Soil Science. 2012
Giles M, Morley N, Baggs EM, Daniell TJ.  2012.  Soil nitrate reducing processes - drivers, mechanisms for spatial variation, and significance for nitrous oxide production. Frontiers in Microbiology. 3:407.
Newton AC, Guy DC, Bengough AG, Gordon DC, McKenzie BM, Sun B, Valentine TA, Hallett PD.  2012.  Soil tillage effects on the efficacy of cultivars and their mixtures in winter barley. Field Crops Research. 128:91-100.
Nelson SE, Tisdall JM, Wilkinson K, Smith SE, McKenzie BM.  2012.  Stabilisation of soil against wind erosion by six saprotrophic fungi. Soil Biology and Biochemistry. 50:134-141.
Puttock A, Dungait JAJ, Bol R, Dixon ER, Macleod CJA, Brazier RE.  2012.  Stable carbon isotope analysis of fluvial sediment fluxes over two contrasting C4-C3 semi-arid vegetation transitions. Rapid Communications in Mass Spectrometry. 26:2386-2392.
Beattie JH, Gordon M, Duthie SJ, McNeil CJ, Horgan GW, Nixon GF, Feldmann J, Kwun I.  2012.  Suboptimal dietary zinc intake promotes vascular inflammation and atherogenesis in a mouse model of atherosclerosis. Molecular Nutrition and Food Research. 56:1097-1105.
Deeks MJ, Calcutt JR, Ingle EKS, Hawkins TJ, Chapman SN, Richardson AC, Mentlak DA, Dixon MR, Cartwright F, Smertenko AP et al..  2012.  A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Current Biology. 22:1595-1600.
Macdiarmid JI, Kyle J, Horgan GW, Loe J, Fyfe C, Johnstone A, McNeill G.  2012.  Sustainable diets for the future: can we contribute to reducing greenhouse gas emissions by eating a healthy diet? American Journal of Clinical Nutrition. 96:632-639.
Gorelkin P, Kalinina N, Love A, Makarov V, Taliansky M, Yaminsky I.  2012.  Synthesis of nanoparticles using plants. Nanoindustry. 7:16-22.
Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W.  2012.  A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis. The Plant Cell. 24:3506-3529.
White PJ, Broadley MR, Thompson JA, McNicol JW, Crawley MJ, Poulton PR, Johnston AE.  2012.  Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment. New Phytologist. 196:101-109.
Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow M, Verdier V, Beer SV, Machado MA et al..  2012.  Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology. 13:614-629.
Marquez Y, Brown JWS, Simpson CG, Barta A, Kalyna M.  2012.  Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Research. 22:1184-1195.
Buijs A, Hovardas T, Castro P, Devine-Wright P, Figari H, Fischer A, Mouro C, Selge S.  2012.  Understanding people's ideas on natural resource management: research on social representations of nature. Society and Natural Resources.. 25:1167-1181.
Peukert S, Bol R, Roberts W, Macleod CJA, Murray PJ, Dixon ER, Brazier RE.  2012.  Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments. Rapid Communications in Mass Spectrometry. 26:2413-2421.
van de Weerd HA, Seaman S, Wheeler K, Goddard PJ, McLean B.  2012.  Use of artificial drinkers by unhandled semi-feral ponies. Applied Animal Behaviour Science. 139:86-95.
Hoggard N, Cruickshank M, Moar KM, Bashir S, Mayer CD.  2012.  Using gene expression to predict differences in the secretome of human omental vs. subcutaneous adipose tissue. Obesity. 20:1158-1167.
NicDaéid NN, Meier-Augenstein W, Kemp HF, Sutcliffe OB.  2012.  Using isotopic fractionation to link precursor to product in the synthesis of (±)-mephedrone. A new tool for combating 'legal high' drugs. Analytical Chemistry. 84:8691-8696.
Bouwman FG, de Roos B, Rubio-Aliaga I, Crosley LK, Duthie SJ, Mayer CD, Horgan GW, Polley AC, Heim C, Coort SLM et al..  2011.  2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting. BMC Medical Genomics. 4
Holobinko A, Meier-Augenstein W, Kemp HF, Prowse T, Ford SM.  2011.  2H stable isotope analysis of human tooth enamel: a new tool for forensic human provenancing? Rapid Communications in Mass Spectrometry. 25:910-916.
Mayor DJ, Cook K, Thornton B, Walsham P, Witte UFM, Zuur AF, Anderson TR.  2011.  Absorption efficiencies and basal turnover of C, N and fatty acids in a marine Calanoid copepod. Functional Ecology. 25:509-518.
Raven JA, Giordano M, Beardall J, Maberly SC.  2011.  Algal and aquatic plant carbon concentrating mechanisms in relation to environmental change. Photosynthesis Research. 109:281-296.
Paterson E, Neilson R, Midwood AJ, Osborne SM, Sim A, Thornton B, Millard P.  2011.  Altered food web structure and C-flux pathways associated with mineralisation of organic amendments to agricultural soil. Applied Soil Ecology. 48:107-116.
Khalid A, Arshad M, Anjum M, Mahmood T, Dawson LA.  2011.  The anaerobic digestion of solid organic waste. Waste Management. 31:1737-1744.
Ode A, Miller DR.  2011.  Analysing the relationship between indicators of landscape complexity and preference. Environment and Planning B. 38:24-40.
Yong SYC, Choong CY, Cheong PL, Pang SL, Amalina RN, Harikrishna JA, Mat-Isa MN, Hedley PE, Milne L, Vaillancourt RE et al..  2011.  Analysis of ESTs generated from inner bark tissue of an Acacia auriculiformis x Acacia mangium hybrid. Tree Genetics and Genomes. 7:143-152.
Kalendar R, Flavell AJ, Ellis THN, Sjakste T, Moisy C, Schulman AH.  2011.  Analysis of plant diversity with retrotransposon-based molecular markers. Heredity. 106:520-530.
Nwosu F, Morris J, Lund VA, Stewart D, Ross HA, McDougall GJ.  2011.  Anti-proliferative and potential anti-diabetic effects of phenolic-rich extracts from edible marine algae. Food Chemistry. 126:1006-1012.
Knapp CW, McCluskey SM, Singh BK, Campbell CD, Hudson G, Graham DW.  2011.  Antibiotic resistance gene abundances correlate with metal and geochemical conditions in archived Scottish soils. PLoS ONE. 6:e27300.
Martin-Ortega J, Brouwer R, Aiking H.  2011.  Application of a value based equivalency method to assess environmental damage compensation under the European Environmental Liability Directive. Journal of Environmental Management. 92:1461-1470.
Davison J, Opik M, Daniell TJ, Moora M, Zobel M.  2011.  Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages. FEMS Microbiology Ecology. 78:103-115.
Rosling A, Cox F, Cruz-Martinez K, Ihrmark K, Grelet GA, Lindahl BD, Menkis A, James TY.  2011.  Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science. 333:876-879.
Mitchell C, Brennan RM, Cross JV, Johnson SN.  2011.  Arthropod pests of currant and gooseberry crops in the UK: their biology, management and future prospects. Agricultural and Forest Entomology. 13:221-237.
Farmer J, Matthews R, Smith JU, Smith P, Singh BK.  2011.  Assessing existing peatland models for their applicability for modelling greenhouse gas emissions from tropical peat soils. Current Opinion in Environmental Sustainability. 3:339-349.
McDougall GJ, Martinussen I, Junttila O, Verrall SR, Stewart D.  2011.  Assessing the influence of genotype and temperature on polyphenol composition in cloudberry (Rubus chamaemorus L) using a novel mass spectrometric method. Journal of Agricultural and Food Chemistry. 59:10860-10868.
Wuyts N, Bengough AG, Roberts TJ, Du C, Bransby MF, McKenna SJ, Valentine TA.  2011.  Automated motion estimation of root responses to sucrose in two Arabidopsis thaliana genotypes using confocal microscopy. Planta. 234:769-784.
Grussu D, Stewart D, McDougall GJ.  2011.  Berry polyphenols inhibit a-amylase in vitro: Identifying active components in rowanberry and raspberry. Journal of Agricultural and Food Chemistry. 59:2324-2331.
Prior GL, Evans DM, Thirgood SJ, Redpath S, Monaghan P.  2011.  Birds bias offspring sex ratio in response to livestock grazing. Biology Letters. 7:958-960.
Dolan A, MacFarlane SA, McGavin WJ, Brennan RM, McNicol JW.  2011.  Blackcurrant reversion virus: validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants. Journal of Berry Research. 1:201-208.
Palacio S, Paterson E, Sim A, Hester AJ, Millard P.  2011.  Browsing affects intra-ring carbon allocation in species with contrasting wood anatomy. Tree Physiology. 31:150-159.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2011.  Browsing interacts with climate to determine tree-ring increment. Functional Ecology. 25:1018-1023.
Thornton B, Zhang ZL, Mayes RW, Hogberg MN, Midwood AJ.  2011.  Can gas chromatography combustion isotope ratio mass spectrometry be used to quantify organic compound abundance? Rapid Communications in Mass Spectrometry. 23:2433-2438.
Midwood AJ, Millard P.  2011.  Challenges in measuring the d13C of the soil surface CO2 efflux. Rapid Communications in Mass Spectrometry. 25:232-242.
Kikvidze Z, Michalet R, Brooker RW, Cavieres LA, Lortie CJ, Pugnaire FI, Callaway RM.  2011.  Climatic drivers of plant-plant interactions and diversity in alpine communities. Alpine Botany. 121:63-70.
Limpens J, Granath G, Gunnarsson U, Aerts R, Bayley S, Bragazza L, Bubier J, Buttler A, van den Berg LJL, Francez AJ et al..  2011.  Climatic modifiers of the response to nitrogen deposition in peat-forming Sphagnum mosses: a meta-analysis. New Phytologist. 191:496-507.
Blackstock KL, Dinnie E, Trench H, Miles G.  2011.  Co-researching the Cairngorms: supporting the aims of, not just researching in, the Cairngorms National Park. Scottish Geographical Journal.. 127:40-60.
Chen XW, Hedley PE, Morris J, Liu H, Niks RE, Waugh R.  2011.  Combining genetical genomics and bulked segregant analysis-based differential expression: an approach to gene localization. Theoretical and Applied Genetics. 122:1375-1383.
Bayer MM, Milne I, Stephen G, Shaw P, Cardle L, Wright F, Marshall DF.  2011.  Comparative visualization of genetic and physical maps with Strudel. Bioinformatics. 27:1307-1308.
Dick J, Andrews C, Beaumont DA, Benham S, Brooks DR, Corbett S, Lloyd D, McMillan S, Monteith DT, Pilgrim ES et al..  2011.  A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
Balana BB, Yatich T, Makela M.  2011.  A conjoint analysis of landholder preferences for reward-based land-management contracts in Kapingazi watershed, Eastern Mount Kenya. Journal of Environmental Management. 92:2634-2646.
Martin-Ortega J.  2011.  The costs of adaptation to climate change in freshwater systems: the state-of-play. Revista Espanola de Economia Agraria y de los Recursos Naturales. 11:3-26.
Newton AC, Flavell AJ, George TS, Leat P, Mullholland BJ, Ramsay L, Revoredo-Giha C, Russell JR, Steffenson BJ, Swanston JS et al..  2011.  Crops that feed the world 4. Barley: a resilient crop? Strengths and weaknesses in the context of food security Food Security. 3:141-178.
Moran D, MacLeod M, Wall V, Eory V, McVittie A, Barnes A, Rees R, Pajot G, Matthews R, Smith P et al..  2011.  Developing carbon budgets for UK agriculture, land-use, land-use change and forestry out to 2022. Climatic Change. 105:529-553.
Benavides J, Maley SM, Pang YP, Palarea J, Eaton SL, Katzer F, Innes EA, Buxton DA, Chianini F.  2011.  Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology. 179:209-215.
Lewis FI, Brulisauer F, Cousens C, McKendrick IJ, Gunn GJ.  2011.  Diagnostic accuracy of PCR for Jaagsiekte sheep retrovirus using field data from 125 Scottish sheep flocks. Veterinary Journal. 187:104-108.
Anthony JP, Fyfe L, Stewart D, McDougall GJ.  2011.  Differential effectiveness of berry polyphenols as anti-giardial agents. Parasitology. 138:1110-1116.
Zebarth BJ, Tai H, Sainan L, Millard P, De Koyer D, Li XQ, Xiong X.  2011.  Differential gene expression as an indicator of nitrogen sufficiency in field grown potato plants. Plant and Soil. 345:387-400.
Woinarski JCZ, Legge S, Fitzsimons JA, Traill BJ, Burbidge AA, Fisher A, Firth RSC, Gordon IJ, Griffiths AD, Johnson C et al..  2011.  The disappearing mammal fauna of northern Australia: context, cause, and response. Conservation Letters. 4:192-201.
Day-Stirrat RJ, Milliken KL, Dutton SP, Loucks RG, Hillier S, Aplin AC, Schleicher AM.  2011.  Discussion in response to Knut Bjorlykke regarding JMPG_1376 "Open-System Chemical Behavior In Deep Wilcox Group Mudstones, Texas Gulf Coast, USA". Marine and Petroleum Geology. 28:1383-1384.
Villamor GB, van Noordwijk M, Le QB, Lusiana B, Matthews RB.  2011.  Diversity deficits in modelled landscape mosaics. Ecological Informatics. 6:73-82.
Hepburn CD, Pritchard DW, Cornwall CE, McLeod RJ, Beardall J, Raven JA, Hurd CL.  2011.  Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Global Change Biology. 17:2488-2497.
Iason GR, O'Reilly-Wapstra J, Brewer MJ, Summers RW, Moore BD.  2011.  Do multiple herbivores maintain chemical diversity of Scots pine monoterpenes? Philosophical Transactions of the Royal Society, Series B. 366:1337-1345.
Walker AW, Ince J, Duncan SH, Webster L, Holtrop G, Ze X, Brown DS, Stares MD, Scott P, Bergerat A et al..  2011.  Dominant and diet-responsive groups of bacteria within the human colonic microbiota. International Society for Microbial Ecology (ISME) Journal. 5:220-230.
Byrne SL, Foito A, Hedley PE, Morris J, Stewart D, Barth S.  2011.  Early response mechanisms of perennial ryegrass (Lolium perenne) to phosphorous deficiency. Annals of Botany. 107:243-254.
Garcia-Palacios P, Bowker MA, Chapman SJ, Maestre FT, Soliveres S, Gallardo A, Valladares F, Guerrero C, Castillo-Monroy AP, Escudero A.  2011.  Early-successional vegetation changes after roadside prairie restoration modify soil functioning by changing microbial functional diversity. Soil Biology and Biochemistry. 43:1245-1253.
McAllister RRJ, G. TJ, Reeson AF, Gordon IJ.  2011.  Economic behavior in the face of resource variability and uncertainty. Ecology and Society. 16:6.
Koikkalainen RK, l Dawson A, Mayes RW, Smith JU.  2011.  Effect of plant species, nitrogen fertilizer and grass age on the dynamics of intra-aggregate SOM. Soil Biology and Biochemistry. 43:1104-1107.
Swanston JS, Middlefell-Williams J, Forster BP, Thomas WTB.  2011.  Effects of grain and malt beta-glucan on distilling quality in a population of hull-less barley. Journal of the Institute of Brewing. 117:389-393.
Jayakody S, Sibbald AM, Mayes RW, Hooper RJ, Gordon IJ, Lambin X.  2011.  Effects of human disturbance on the diet composition of wild red deer Cervus elaphus. European Journal of Wildlife Research. 57:939-948.
Adams T, Ackland G, Marion G, Edwards C.  2011.  Effects of local interaction and dispersal on the dynamics of size-structured populations. Ecological Modelling. 222:1414-1422.
Karami N, Clemente R, Moreno-Jimenez E, Lepp NW, Beesley L.  2011.  Efficiency of green waste compost and biochar soil amendments for reducing lead and copper mobility and uptake to ryegrass. Journal of Hazardous Materials. 191:41-48.
Johnson SN, Barton AT, Clark KE, Gregory PJ, McMenemy LS, Hancock RD.  2011.  Elevated atmospheric carbon dioxide impairs the performance of root-feeding vine weevils by modifying root growth and secondary metabolites. Global Change Biology. 17:688-695.
Fischer A, Peters V, Vavra J, Neebe M, Megyesi G.  2011.  Energy use, climate change and folk psychology: Does sustainability have a chance? Results from a qualitative study in five European countries Global Environmental Change. 21:1025-1034.
Martin-Ortega J, Giannocaro G, Berbel J.  2011.  Environmental and resource costs under water scarcity conditions: an estimation in the context of the European Water Framework Directive. Water Resources Management. 25:1615-1633.
McIntosh BS, Ascough, J. C. II, Twery M, Chew J, Elmahdi A, Haase D, Harou JJ, Hepting D, Cuddy S, Jakeman AJ et al..  2011.  Environmental decision support systems (EDSS) development - challenges and best practices. Environmental Modelling and Software. 26:1389-1402.
Marcon M, Mariano K, Braga RA, Paglis CM, Scalco MS, Horgan GW.  2011.  Estimation of total leaf area in perennial plants using image analysis. Revista Brasileira de Engenharia Agricola e Ambiental. 15:96-101.
Turner SP, Farnworth MJ, Mendl M, Erhard HW, Lawrence AB.  2011.  Evidence for residence-induced enhancement of aggressiveness in the non-territorial pig. Applied Animal Behaviour Science. 130:10-19.
Martin P, Johnson SN.  2011.  Evidence that elevated CO2 reduces resistance to the European large raspberry aphid in some raspberry cultivars. Journal of Applied Entomology. 135:237-240.
Hofinger BJ, Russell JR, Bass CG, Baldwin T, dos Reis M, Hedley PE, Li Y, Macaulay M, Waugh R, Hammond-Kosack KE et al..  2011.  An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20:3653-3668.
Mayer CD, Lorent J, Horgan GW.  2011.  Exploratory analysis of multiple omics datasets using the adjusted RV coefficient. Statistical Applications in Genetics and Molecular Biology. 10:14.
Asensio AC, Marino D, James EK, Ariz I, Arrese-Igor C, Aparicio-Tejo PM, Arredondo-Peter RJ, Moran JF.  2011.  Expression and localization of a Rhizobium-derived cambialistic superoxide dismutase in pea (Pisum sativum) nodules subjected to oxidative stress. Molecular Plant-Microbe Interactions. 24:1247-1257.
Subedi M, Hocking TJ, Fullen MA, McCrea AR, Milne E.  2011.  Factors influencing the effectiveness of an agro-environmental project in China. Outlook on Agriculture. 40:157-163.
Moreno-Jimenez E, Beesley L, Lepp NW, Dickinson NM, Hartley W, Clemente R.  2011.  Field sampling of soil pore water to evaluate trace element mobility and associated environmental risk. Environmental Pollution. 159:3078-3085.
McGeoch SC, Holtrop G, Fyfe C, Lobley GE, Pearson DW, Abraham P, Megson IL, MacRury SM, Johnstone AM.  2011.  Food intake and dietary glycaemic index in free-living adults with and without type 2 diabetes melitus. Nutrients. 3:683-693.
Bernhardt-Romermann M, Gray A, Vanbergen AJ, Berges L, Bohner A, Brooker RW, De Bruyn L, De Cinti B, Dirnbrock T, Grandin U et al..  2011.  Functional traits and local environment predict vegetation responses to disturbance: a pan-European multi-site-experiment. Journal of Ecology. 99:777-787.
Malosetti M, van Eeuwijk FA, Boer MP, Casas AM, Elia M, Moralejo M, Bhat PR, Ramsay L, Molina-Cano J.  2011.  Gene and QTL detection in a three-way barley cross under selection by a mixed model with kinship information using SNPs. Theoretical and Applied Genetics. 122:1605-1616.
Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M et al..  2011.  Genetic dissection of barley morphology and development. Plant Physiology. 155:617-627.
Martin-Sanz A, Caminero C, Jing R, Flavell AJ, de la Vega MP.  2011.  Genetic diversity among Spanish pea (Pisum sativum L.) landraces, pea cultivars and the world Pisum sp. core collection assessed by retrotransposon-based insertion polymorphisms (RBIPs). Spanish Journal of Agricultural Research. 9:166-178.
Sait M, Clark EM, Wheelhouse N, Spalding L, Livingstone M, Sachse K, Markey BK, Magnino S, Siarkou VI, Vretou E et al..  2011.  Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. Veterinary Microbiology. 151:284-290.
Xu X, Pan SK, Cheng SF, Zhang B, Mu DS, Ni PX, Zhang GY, Yang S, Li RQ, Wang J et al..  2011.  Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJA et al..  2011.  Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathogens. 7:e1002219.
Lambe NR, Richardson RI, Macfarlane JM, Nevison I, Haresign W, Matika O, Bunger L.  2011.  Genotypic effects of the Texel Muscling QTL (TM-QTL) on meat quality in purebred Texel lambs. Meat Science. 89:125-132.
Rhind SM, Kyle CE, Mackie C, Yates K, Duff EI.  2011.  Geographic variation in tissue accumulation of endocrine disrupting compounds (EDCs) in grazing sheep. Environmental Pollution. 159:416-422.
Speed J, Austrheim G, Hester AJ, Mysterud A.  2011.  Growth limitation of mountain birch caused by sheep browsing at the altitudinal treeline. Forest Ecology and Management. 261:1344-1352.
Baker RH, Buschbaum S, Matthews J, McKendrick IJ, Schnieder T, Strube C, Nisbet AJ.  2011.  GTP-cyclohydrolase and development in Teladorsagia circumcinta and Dictyocaulus viviparus (Nematoda:Strongylida). Experimental Parasitology. 128:309-317.
Shahinnia F, Druka A, Franckowiak JD, Morgante M, Waugh R, Stein N.  2011.  High resolution mapping of Dense spike-ar ( to the genetic centromere of barley chromosome 7H. Theoretical and Applied Genetics. 124:373-384.
Schmalenbach I, March TJ, Bringezu T, Waugh R, Pillen K.  2011.  High-resolution genotyping of wild barley introgression lines and fine-mapping of the threshability locus thresh-1 using the Illumina GoldenGate assay. Genes Genomes Genetics. 1:187-196.
Liu H, McNicol JW, Bayer MM, Morris JA, Cardle L, Marshall DF, Schulte D, Stein N, Shi B, Tandien S et al..  2011.  Highly parallel gene-to-BAC addressing using microarrays. Biotechniques. 50:165-174.
Russell JR, Bayer MM, Booth C, Cardle L, Hackett CA, Hedley PE, Jorgensen L, Morris JA, Brennan RM.  2011.  Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum). BMC Plant Biology. 11:147.
Beesley L, Marmiroli M.  2011.  The immobilisation and retention of soluble arsenic, cadmium and zinc by biochar. Environmental Pollution. 159:474-480.
Marconi M, Giordano M, Raven JA.  2011.  Impact of taxonomy, geography and depth on delta C-13 and delta N-15 variation in a large collection of macroalgae. Journal of Phycology. 47:1023-1035.
Mclean MH, Murray GI, Stewart KN, Norrie G, Mayer C, Hold GL, Thompson J, Fyfe M, Hope M, Mowat NAG et al..  2011.  The inflammatory microenvironment in colorectal neoplasia. PLoS ONE. 6:e15366.
Manning AD, Wood J, Cunningham RB, McIntyre S, Shorthouse DJ, Gordon IJ, Lindenmayer DB.  2011.  Integrating research and restoration: a long-term woodland experiment in south-eastern Australia. Australian Zoologist. 35:633-648.
Halas S, Skrzypek G, Meier-Augenstein W, Pelc A, Kemp HF.  2011.  Inter-laboratory calibration of new silver orthophosphate comparison materials for stable oxygen isotope analysis of phosphates. Rapid Communications in Mass Spectrometry. 25:579-584.
Ramsay L, Comadran J, Druka A, Marshall DF, Thomas WTB, Macaulay M, MacKenzie K, Simpson CG, Fuller J, Bonar N et al..  2011.  INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nature Genetics. 43:169-172.
McKeown NK, Bishop JL, Cuadros J, Hillier S, Amador E, Makarewicz HD, Parente M, Silver EA.  2011.  Interpretation of reflectance spectra of clay mineral-silica mixtures: implications for Martian clay mineralogy at Mawrth Vallis. Clays and Clay Minerals. 59:400-415.
NicDaeid NN, Meier-Augenstein W, Kemp HF.  2011.  Investigating the provenance of un-dyed spun cotton fibre using multi-isotope profiles and chemometric analysis. Rapid Communications in Mass Spectrometry. 25:1812-1816.
Upadhyaya HD, Dwivedi SL, Ambrose M, Ellis N, Berger J, Smykal P, Debouck D, Duc G, Dumet D, Flavell A et al..  2011.  Legume genetic resources: management, diversity assessment, and utilization in crop improvement. Euphytica. 180:27-47.
Gyaneshwar P, Hirsch AM, Moulin L, Chen WM, Elliott GN, Bontemps C, Estrada-de los Santos P, Gross E, dos Reis J, F.B et al..  2011.  Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Molecular Plant-Microbe Interactions. 24:1276-1288.
Macdonald CA, Clark IM, Zhao FJ, Hirsch PR, Singh BK, McGrath SP.  2011.  Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils. Soil Biology and Biochemistry. 43:932-941.
Whitfield S, Reed M, Thomson KJ, Christie M, Stringer L, Quin CH, Anderson R, Moxey A, Hubacek K.  2011.  Managing peatland ecosystem services: current UK policy and future challenges in a changing world. Scottish Geographical Journal. 127:209-230.
Frederiksen M, Elston DA, Edwards M, Mann AD, Wanless S.  2011.  Mechanisms of long-term decline in size of lesser sandeels in the North Sea explored using a growth and phenology model. Marine Ecology Progress Series. 432:137-147.
Veresoglou SD, Mamolos AP, Thornton B, Voulgari OK, Sen R, Veresoglou S.  2011.  Medium-term fertilization of grassland plant communities masks plant species linked effects on soil microbial community structure. Plant and Soil. 344:187-196.
Abreu IN, Choi YH, Sawaya ACHF, Eberlin MN, Mazzafera P, Verpoorte R.  2011.  Metabolic alterations in different development stages Pilocarpus microphyllus. Planta Medica. 77:293-300.
Beleggia R, Platani C, Papa R, Di Chio A, Barros E, Mashaba C, Wirth J, Fammartino A, Sautter C, Conner S et al..  2011.  Metabolomics and food processing: from semolina to pasta. Journal of Agricultural and Food Chemistry. 59:9366-9377.
Rubio-Aliaga I, de Roos B, Duthie SJ, Crosley LK, Mayer C, Horgan GW, Colquhoun IJ, Le Gall G, Huber F, Kremer W et al..  2011.  Metabolomics of prolonged fasting in humans reveals new catabolic markers. Metabolomics. 7:375-387.
Ronfort C, Souchere V, Martin P, Sebillotte C, Castellazzi MS, Barbottin A, Meynard JM, Laignel B.  2011.  Methodology for land use change scenario assessment for runoff impacts: A case study in a north-western European Loess belt region (Pays de Caux, France). Catena. 86:36-48.
Bohan DA, Powers SJ, Champion G, Haughton AJ, Hawes C, Squire GR, Cussans J, Mertens SK.  2011.  Modelling rotations: can crop sequences explain arable weed seedbank abundance? Weed Research. 51:422-432.
Oliveira CMG, Monteiro AR, Blok VC.  2011.  Morphological and molecular diagnostics for plant-parastic nematodes: working together to get the identification done. Tropical Plant Pathology. 36:65-73.
van Doorn WG, Beers EP, Dangl JL, Franklin-Tong VE, Gallois P, Hara-Nishimura I, Jones AM, Kawai-Yamada M, Lam E, Mundy J et al..  2011.  Morphological clasification of plant cell deaths. Cell Death and Differentiation. 18:1241-1246.
Xiao H, Hourihan JM, Brown LJ, McMahon M, Stewart D, Hayes JD.  2011.  Nrf2-mediated induction of antioxidant response element-driven gene expression by flavonoids is dependent on their chemical structure. Toxicology. 290:126-127.
de Carcer DA, Cuiv O, Wang T, Kang S, Worthley D, Whitehall V, Gordon IJ, McSweeney C, Leggett B, Morrison M.  2011.  Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon. ISME Journal. 5:801-809.
Torres GA, Gong Z, Iovene M, Hirsch C, Buell CR, Bryan GJ, Novak P, Macas J, Jiang J.  2011.  Organization and evolution of subtelomeric satellite repeats in the potato genome. Genes Genomes Genetics. 1:85-92.
Yan X, De Clercq P, Han R, Jones JT, Chen S, Moens M.  2011.  Osmotic responses of different strains of Steinernema carpocapsae. Nematology. 13:845-851.
McGavin WJ, Cock PJA, MacFarlane SA.  2011.  Partial sequence and RT-PCR diagnostic test for the plant rhabdovirus Raspberry vein chlorosis virus. Plant Pathology. 60:462-467.
Comadran J, Ramsay L, MacKenzie K, Hayes P, Close TJ, Muehlbauer G, Stein N, Waugh R.  2011.  Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theoretical and Applied Genetics. 122:523-531.
Ross HA, Morris WL, Ducreux LJM, Hancock RD, Verrall SR, Morris JA, Tucker GA, Stewart D, Hedley PE, McDougall GJ et al..  2011.  Pectin engineering to modify product quality in potato. Plant Biotechnology Journal. 9:848-856.
Smkal P, Kenicer G, Flavell AJ, Corander J, Kosterin O, Redden RJ, Ford R, Coyne CJ, Maxted M, Ambrose MJ et al..  2011.  Phylogeny, phylogeography and genetic diversity of the Pisum genus. Plant Genetic Resources. 9:4-18.
Bjorkman M, Klingen I, Birch ANE, Bones AM, Bruce T, Johansen T, Meadow R, Molmann J, Selijasen R, Smart L et al..  2011.  Phytochemicals of Brassicaceae in plant protection and human health - influences of climate, environment and agronomic practice. Phytochemistry. 72:538-556.
Johnson SN, Staley JT, McLeod FAL, Hartley SE.  2011.  Plant-mediated effects of soil invertebrates and summer drought on above-ground multitrophic interactions. Journal of Ecology. 99:57-65.
Veronico P, Melillo MT, Saponaro C, Leonetti P, Picardi E, Jones JT.  2011.  A polygalacturonase-inhibiting protein with a role in pea defence against the cyst nematode Heterodera goettingianna. Molecular Plant Pathology. 12:275-287.
Mattila PH, Hellstrom J, McDougall GJ, Dobson G, Pihlava JM, Tiirikka.T, Stewart D, Karjalainen RO.  2011.  Polyphenol and vitamin C content in European commercial blackcurrant juice products. Food Chemistry. 127:1216-1223.
Moloney PD, Hearne JW, Gordon IJ, McLeod S.  2011.  Portfolio optimisation techniques for a mixed-grazing scenario for Australia's rangelands. Natural Resource Modeling. 24:102-116.
Ross HA, Wright KM, McDougall GJ, Roberts AG, Chapman SN, Morris WL, Hancock RD, Stewart D, Tucker GA, James EK et al..  2011.  Potato tuber pectin structure is influenced by pectin methyl esterase activity and impacts on cooked potato texture. Journal of Experimental Botany. 62:371-381.
Elston DA, Nevison IM, Scott WA, Sier ARJ, Morecroft MD.  2011.  Power calculations for monitoring studies: a case study with alternative models for random variation. Environmetrics. 22:618-625.
Fox NJ, White PCL, McClean CJ, Marion G, Evans A, Hutchings MR.  2011.  Predicting impacts of climate change on Fasciola hepatica risk. PLoS ONE. 6:e16126.
Gilroy EM, Breen S, Whisson SC, Squires J, Hein I, Kaczmarek M, Turnbull D, Boevink P, Lokossou A, Cano LM et al..  2011.  Presence/absence, differential expression and sequence polmorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants. New Phytologist. 191:763-776.
Evans J, Knight H, McKendrick IJ, Stevenson H, Barbudo AV, Gunn GJ, Low JC.  2011.  Prevalence of Escherichia coli O157: H7 and serogroups O26, O103, O111 and O145 in sheep presented for slaughter in Scotland. Journal of Medical Microbiology. 60:653-660.
Gontikaki E, Mayor DJ, Thornton B, Black K, Witte U.  2011.  Processing of 13C-labelled diatoms by a bathyal community at sub-zero temperatures. Marine Ecology Progress Series. 421:39-50.
Nijnik M, Miller DR, Nijnik, M.; Mather A, Fiorini S, Vogt N, Brondizio E, Morrice JG.  2011.  Public participation for planning the sustainable use of natural resources and landscape changes. International Journal of Interdisciplinary Social Sciences. 5:303-320.
Moles AT, Wallis IR, Foley WJ, Warton DI, Bisigato AJ, Clark CJ, Cohen PS, Cornwell WK, Edwards EWR, Gonzales-Ojeda T et al..  2011.  Putting plant defences on the map: a test of the idea that plants are better defended at lower latitudes. New Phytologist. 191:777-788.
Vinuela-Fernandez I, Jones E, McKendrick IJ, Molony V.  2011.  Quantitative assessment of increased sensitivity of chronic laminitic horses to hoof tester evoked pain. Equine Veterinary Journal. 43:62-68.
Matthews KB, Rivington M, Blackstock KL, McCrum G, Buchan K, Miller DG.  2011.  Raising the bar? The challenge of evaluating the outcomes of environmental modelling and software Environmental Modelling and Software. 26:247-257.
Mantelin S, Peng H, Li B, tamian HS, Takken FLW, Kaloshian I.  2011.  The receptor-like kinase SlSERK1 is required for Mi-1-mediated resistance to potato aphids in tomato. Plant Journal. 67:459-471.
Hammond JP, Mayes S, Bowen HC, Graham NS, Hayden RM, Love CG, Spracklen WP, Wang J, Welham SJ, White PJ et al..  2011.  Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa. Plant Physiology. 156:1230-1241.
Nazaries L, Tate KR, Ross DJ, Singh J, Dando J, Saggar S, Baggs EM, Millard P, Murrell JC, Singh BK.  2011.  Response of methanotrophic communities to afforestation and reforestation in New Zealand. ISME Journal. 5:1832-1836.
Sibbald AM, Hooper RJ, McLeod JE, Gordon IJ.  2011.  Responses of red deer (Cervus elaphus) to regular disturbance by hill walkers. European Journal of Wildlife Research. 57:817-825.
Kennedy E, Curran J, Mayes B, McEvoy M, Murphy JP, O'Donovan M.  2011.  Restricting dairy cow access time to pasture in early lactation: the effects on milk production, grazing behaviour and dry matter intake. Animal. 5:1805-1813.
Beesley L, Moreno-Jimenez E, Gomez-Eyles JL, Harris E, Robinson B, Sizmur T.  2011.  A review of biochars' potential role in the remediation, revegetation and restoration of contaminated soils. Environmental Pollution. 159:3269-3282.
Ashfaq M, McGavin WJ, MacFarlane SA.  2011.  RNA2 of TRV SYM breaks the rules for tobravirus genome structure. Virus Research. 160:435-438.
Jiang N, Wang MH, Jia TY, Wang L, Leach L, Hackett CA, Marshall DF, Luo ZW.  2011.  A robust statistical method for association-based eQTL analysis. PLoS ONE. 6:e23192.
Bengough AG, McKenzie BM, Hallett PD, Valentine TA.  2011.  Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits. Journal of Experimental Botany. 62:59-68.
Lux A, Martinka M, Vaculik M, White PJ.  2011.  Root responses to cadmium in the rhizosphere: a review. Journal of Experimental Botany. 62:21-37.
Luo S, Tai H, Zebarth B, Li XQ, Millard P, De Koeyer D, Xiong X.  2011.  Sample collection protocol effects on quantification of gene expression in potato leaf tissue. Plant Molecular Biology Reporter. 29:369-378.
Warren CR, McKee AJ.  2011.  The Scottish revolution? Evaluating the impacts of post devolution land reform Scottish Geographical Journal. 127:17-39.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.