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2011
Townsend SE, Newey SJ, Thirgood SJ, Haydon DT.  2011.  Dissecting the drivers of population cycles: interactions between parasites and mountain hare demography. Ecological Modelling. 222:48-56.
Villamor GB, van Noordwijk M, Le QB, Lusiana B, Matthews RB.  2011.  Diversity deficits in modelled landscape mosaics. Ecological Informatics. 6:73-82.
Nadeau PH.  2011.  Earth's energy "Golden Zone": a synthesis from mineralogical research. Clay Minerals. 46:1-24.
Fischer A, Peters V, Vavra J, Neebe M, Megyesi G.  2011.  Energy use, climate change and folk psychology: Does sustainability have a chance? Results from a qualitative study in five European countries Global Environmental Change. 21:1025-1034.
Xu X, Pan SK, Cheng SF, Zhang B, Mu DS, Ni PX, Zhang GY, Yang S, Li RQ, Wang J et al..  2011.  Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
Lambe NR, Richardson RI, Macfarlane JM, Nevison I, Haresign W, Matika O, Bunger L.  2011.  Genotypic effects of the Texel Muscling QTL (TM-QTL) on meat quality in purebred Texel lambs. Meat Science. 89:125-132.
Beattie JH, Nicol F, Gordon MJ, Reid MD, Cantlay L, Horgan GW, Kwun IS, Ahn JY, Ha TY.  2011.  Ginger phytochemicals mitigate the obesogenic effects of a high-fat diet in mice: a proteomic and biomarker network analysis. Molecular Nutrition and Food Research. 55:S203-S213.
Donn S, Neilson R, Griffiths BS, Daniell TJ.  2011.  Greater coverage of the phylum Nematoda for SSU rDNA studies. Biology and Fertility of Soils. 47:333-339.
Baker RH, Buschbaum S, Matthews J, McKendrick IJ, Schnieder T, Strube C, Nisbet AJ.  2011.  GTP-cyclohydrolase and development in Teladorsagia circumcinta and Dictyocaulus viviparus (Nematoda:Strongylida). Experimental Parasitology. 128:309-317.
Norici A, Bazzoni AM, Pugnetti A, Raven JA, Giordano M.  2011.  Impact of irradiance on the C allocation in the coastal marine diatom Skeletonema marionoi Sarno and Zingone. Plant, Cell and Environment. 34:1666-1677.
George TS, Brown LK, Newton AC, Hallett PD, Sun BH, Thomas WTB, White PJ.  2011.  Impact of soil tillage on the robustness of the genetic component of variation in phosphorus (P) use efficiency in barley (Hordeum vulgare L.). Plant and Soil. 339:113-123.
Newton AC, Johnson SN, Gregory PJ.  2011.  Implications of climate change for diseases, crop yields and food security. Euphytica. 179:3-18.
Thirugnanasambandam A, Wright KM, Atkins SD, Whisson SC, Newton AC.  2011.  Infection of Rrs1 barley by an incompatible race of the fungus, Rhynchosporium secalis, expressing the green fluorescent protein. Plant Pathology. 60:513-521.
Mclean MH, Murray GI, Stewart KN, Norrie G, Mayer C, Hold GL, Thompson J, Fyfe M, Hope M, Mowat NAG et al..  2011.  The inflammatory microenvironment in colorectal neoplasia. PLoS ONE. 6:e15366.
NicDaeid NN, Meier-Augenstein W, Kemp HF.  2011.  Investigating the provenance of un-dyed spun cotton fibre using multi-isotope profiles and chemometric analysis. Rapid Communications in Mass Spectrometry. 25:1812-1816.
Ballingall KT, Nath M, Holliman A, Laming E, Steele PJ, Willoughby K.  2011.  Lack of evidence for an association between MHC diversity and the development of bovine neonatal pancytopenia in Holstein dairy cattle. Veterinary Immunology and Immunopathology. 141:128-132.
Yao H, Gao Y, Nicol GW, Campbell CD, Prosser JI, Zhang L, Han W, Singh BK.  2011.  Links between ammonia oxidizer community structure, abundance and nitrification potential in acidic soils. Applied and Environmental Microbiology. 77:4618-4625.
Hooftman DAP, Flavell AJ, Jansen H, den Nijs HCN, Syed NH, Sorensen AP, Wengel PO, van de Wiel C.  2011.  Locus-dependent selection in crop-wild hybrids of lettuce under field conditions and its implication for GM crop development. Evolutionary Applications. 4:648-659.
Duarte IM, Almeida MTM, Duarte MM, Brown DJF, Neilson R.  2011.  Molecular diagnosis of trichodorid species from Portugal. Plant Pathology. 60:586-594.
Nijnik M, Slee B, Pajot G.  2011.  Opportunities and challenges for terrestrial carbon offsetting and marketing, with some implications for forestry in the UK. South and East European Journal of Forestry (SEEFOR). 1:69-79.
Torres GA, Gong Z, Iovene M, Hirsch C, Buell CR, Bryan GJ, Novak P, Macas J, Jiang J.  2011.  Organization and evolution of subtelomeric satellite repeats in the potato genome. Genes Genomes Genetics. 1:85-92.
Elston DA, Nevison IM, Scott WA, Sier ARJ, Morecroft MD.  2011.  Power calculations for monitoring studies: a case study with alternative models for random variation. Environmetrics. 22:618-625.
Nijnik M, Miller DR, Nijnik, M.; Mather A, Fiorini S, Vogt N, Brondizio E, Morrice JG.  2011.  Public participation for planning the sustainable use of natural resources and landscape changes. International Journal of Interdisciplinary Social Sciences. 5:303-320.
Sparrow AD, Gregorich EG, Hopkins DW, Novis P, Elberling B, Greenfield LG.  2011.  Resource limitations on soil microbial activity in an Antarctic dry valley. Soil Science Society of America Journal. 75:2188-2197.
Nazaries L, Tate KR, Ross DJ, Singh J, Dando J, Saggar S, Baggs EM, Millard P, Murrell JC, Singh BK.  2011.  Response of methanotrophic communities to afforestation and reforestation in New Zealand. ISME Journal. 5:1832-1836.
Hart DJ, Fairweather-Tait SJ, Broadley MR, Dickinson SJ, Foot I, Knott P, McGrath SP, Mowat H, Norman K, Scott PR et al..  2011.  Selenium concentration and speciation in biofortified flour and bread: Retention of selenium during grain biofortification, processing and production of Se-enriched food. Food Chemistry. 126:1771-1778.
Andrivon D, Avendano-Corcoles J, Cameron AM, Carnegie SF, Cooke LR, Corbiere R, Detourne D, Dowley LJ, Evans D, Forisekova K et al..  2011.  Stability and variability of virulence of Phytophthora infestans assessed in a ring test across European laboratories. Plant Pathology. 60:556-565.
Bisi F, Newey SJ, Nodari M, Wauters LA, Harrison A, Thirgood SJ, Martinoli A.  2011.  The strong and the hungry: Bias in capture methods for mountain hares Lepus timidus. Wildlife Biology. 17:311-316.
Dicker AJ, Nath M, Yaga R, Nisbet AJ, Lainson FA, Gilleard JS, Skuce PJ.  2011.  Teladorsagia circumcincta: The transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro. Experimental Parasitology. 127:351-356.
Mayer KFX, Martis M, Hedley PE, Simkova H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H et al..  2011.  Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell. 23:1249-1263.
Granger SJ, Bol R, Hawkins JMB, White SM, Naden PS, Old GH, Marsh JK, Bilotta GS, Brazier RE, Macleod CJA et al..  2011.  Using artificial fluorescent particles as tracers of livestock wastes within an agricultural catchment. Science of the Total Environment. 409:1095-1103.
Hill PW, Farrar J, Roberts P, Farrell M, Grant H, Newsham KK, Hopkins DW, Bardgett RD, Jones DL.  2011.  Vascular plant success in a warming Antarctic may be due to efficient nitrogen acquisition. Nature Climate Change. 1:50-53.
2012
Nijnik M, Oskam A, Nijnik, M.; Mather A.  2012.  Afforestation for the provision of multiple ecosystem services: a Ukrainian case study. International Journal of Forestry Research, 2012, Article ID 295414, 12pp..
Rodriguez-Gutierrez G, Duthie GG, Wood S, Morrice P, Nicol F, Reid M, Cantlay LL, Kelder T, Horgan GW, Fernandez-Bolanos Guzman J et al..  2012.  Alperujo extract, hydroxytyrosol, and 3,4-dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin e-deficient ratsua proteomics and network analysis approach. Molecular Nutrition and Food Research. 56:1131-1147.
James A, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JWS, Nimmo HG.  2012.  Alternative splicing mediates responses of the Arabidopsis thaliana circadian clock to temperature changes. The Plant Cell. 24:961-981.
Troldborg M, Nowak W, Lange IV, Santos MC, Binning PJ, Bjerg PL.  2012.  Application of Bayesian geostatistics for evaluation of mass discharge uncertainty at contaminated sites. Water Resources Research. 48
Minh ND, Hough RL, Thuy LT, Nyberg Y, Mai LB, Vinh NC, Khai NM, Oborn I.  2012.  Assessing dietary exposure to cadmium in a metal recycling community in Vietnam: age and gender aspects. Science of the Total Environment. 416:164-171.
Bartley K, Huntley JF, Wright HW, Nath M, Nisbet AJ.  2012.  Assessment of cathepsin D and L-like proteinases of poultry red mite, Dermanyssus gallinae (De Geer), as potential vaccine antigens. Parasitology. 139:755-765.
Griffiths BS, Daniell TJ, Donn S, Neilson R.  2012.  Bioindication potential of using molecular characterisation of the nematode community: response to soil tillage. European Journal of Soil Biology. 49:92-97.
Subbarao GV, Sahrawat KL, Nakahara K, Ishikawa T, Rao GP, Hash CT, George TS, Kishii M, Rao PS, Nardi P et al..  2012.  Biological nitrification inhibition (BNI) - a novel strategy to regulate nitrification in agricultural systems. Advances in Agronomy. 114:249-302.
Newton AC, Torrance L, Holden N, Toth IK, Cooke DEL, Blok VC, Gilroy EM.  2012.  Chapter three - climate change and defence against pathogens in plants. Advances in Applied Microbiology. 81:89-132.
Farrugia K, Bandey H, Dawson LA, NicDaeid NN.  2012.  Chemical enhancement of soil based footwear impressions on fabric. Forensic Science International. 219:12-28.
Fischer A, Peters V, Neebe M, Vavra J, Kriel A, Lapka M, Megyesi B.  2012.  Climate change? No, wise resource use is the issue: social representations of energy, climate change and the future Environmental Policy and Governance. 22:161-176.
Walters DR, Avrova A, Bingham IJ, Burnett FJ, Fountaine J, Havis ND, Hoad SP, Hughes G, Looseley M, Oxley SJP et al..  2012.  Control of foliar diseases in barley: towards an integrated approach. European Journal of Plant Pathology. 133:33-73.
Balana BB, Muys B, Haregeweyn N, Descheemaeker K, Deckers J, Poesen J, Nyssen J, Mathijs E.  2012.  Cost-benefit analysis of soil and water conservation measures: The case of exclosures in northern Ethiopia. Forest Policy and Economics. 15:27-36.
Lockyer AE, Emery AM, Kane RA, Walker AJ, Mayer CD, Mitta G, Coustau C, Adema CM, Hanelt B, Rollinson D et al..  2012.  Early differential gene expression in haemocytes from resistant and susceptible biomphalaria glabrata strains in response to schistosoma mansoni. PLoS ONE, e511020. 7
Hockland S, Niere B, Grenier E, Blok VC, Phillips MS, Den Nijs L, Anthoine G, Pickup J, Viaene N.  2012.  An evaluation of the implications of virulence in non-European populations of Globodera pallida and G. rostochiensis for potato cultivation in Europe. Nematology. 14:1-13.
Looseley M, Newton AC, Atkins SD, Fitt BDL, Fraaije BA, Thomas WTB, Keith R, Macaulay M, Lynott JS, Harrap D.  2012.  Genetic basis of control of Rhynchosporium secalis infection and symptom expression in barley. Euphytica. 184:47-56.
Russell GC, Benavides J, Grant DM, Todd H, Thomson J, Puri V, Nath M, Haig DM.  2012.  Host gene expression changes in cattle infected with Alcelaphine herpesvirus 1. Virus Research. 169:246-254.
Love AJ, Chapman SN, Matic S, Noris E, Lomonossoff GP, Taliansky ME.  2012.  In planta production of a candidate vaccine against bovine papillomavirus type 1. Planta. 236:1305-1313.
Carpenter D, Sherlock E, Jones DT, Chiminoides J, Writer T, Neilson R, Boag B, Keith AM, Eggleton P.  2012.  Mapping of earthworm distribution for the British Isles and Eire highlights the under-recording of an ecologically important group. Biodiversity and Conservation. 21:475-485.
Bartley PM, Wright SE, Maley SW, Macaldowie CN, Nath M, Hamilton CM, Katzer F, Buxton D, Innes EA.  2012.  Maternal and foetal immune responses of cattle following an experimental challenge with Neospora caninum at day 70 of gestation. Veterinary Research. 43:38.
Gontikaki E, Polymenakou PN, Thornton B, Narayanaswamy BE, Black K, Tselepides A, Witte U.  2012.  Microbial response to organic matter enrichment in the oligotrophic Levantine Basin (Eastern Mediterranean). Geomicrobiology Journal. 29:648-655.
Old GH, Naden PS, Granger SJ, Bilotta GS, Brazier RE, Macleod CJA, Krueger T, Bol R, Hawkins JMB, Haygarth P et al..  2012.  A novel application of natural fluorescence to understand the sources and transport pathways of pollutants from livestock farming in small headwater catchments. Science of the Total Environment. 417:169-182.
Donn S, Neilson R, Griffiths BS, Daniell TJ.  2012.  A novel molecular approach for rapid assessment of soil nematode assemblages û variation, validation and potential applications. Methods in Ecology and Evolution. 3:12-23.
Thonur L, Maley M, Gilray J, Crook T, Laming E, Turnbull D, Nath M, Willoughby K.  2012.  One-step multiplex real time RT-PCR for the detection of bovine respiratory syncytial virus, bovine herpesvirus 1 and bovine parainfluenza virus 3. BMC Veterinary Research. 8:37-37.
Burthe S, Daunt F, Butler A, Elston DA, Frederiksen M, Johns D, Newell M, Thackeray SJ, Wanless S.  2012.  Phenological trends and trophic mismatch across multiple levels of a North Sea pelagic food web. International Journal of Plant Genomics. 454:119-133.
Nielsen UN, Osler GHR, Campbell CD, Burslem DFRP, van der Wal R.  2012.  Predictors of fine-scale spatial variation in soil mite and microbe community composition differ between biotic groups and habitats. Pedobiologia. 55:83-91.
Humphry RW, Bruelisauer F, McKendrick IJ, Nettleton PF, Gunn GJ.  2012.  Prevalence of antibodies to bovine viral diarrhoea virus in bulk tank milk and associated risk factors in Scottish dairy herds. Veterinary Record. 171:445..
Hughes V, Garcia-Sanchez A, Smith S, McLean K, Lainson A, Nath M, Stevenson K.  2012.  Proteome-determined type-specific proteins of Mycobacterium avium subspecies paratuberculosis. Veterinary Microbiology. 158:153-162.
Wening S, Croxford AE, Ford CS, Thomas WTB, Forster BP, Okyere-Boateng G, Nelson SPC, Caligari PDS, Wilkinson MJ.  2012.  Ranking the value of germplasm: new oil palm (Elaeis guineensis) breeding stocks as a case study. Annals of Applied Biology. 160:145-156.
Stopher KV, Nussey DH, Clutton-Brock TH, Guinness F, Morris A, Pemberton JM.  2012.  Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer. Journal of Evolutionary Biology. 25:2457-2469.
Mayor DJ, Thornton B, Hay S, Zuur AF, Nicol GW, McWilliam JM, Witte UFM.  2012.  Resource quality affects carbon cycling in deep-sea sediments. ISME Journal. 6:1740-1748.
Demars BOL, Potts J, Tremolieres M, Thiebaut G, Gougelin N, Nordmann V.  2012.  River macrophyte indices: not the Holy Grail!. Freshwater Biology. 57:1745-1759.
Nicholson A, Wilkinson ME, O'Donnell G, Quinn PF.  2012.  Runoff attenuation features: a sustainable flood mitigation strategy in the Belford catchment, UK. Area. 44:463-469.
Slee B, Feliciano D, Nijnik M, Pajot G.  2012.  The scope of the land-based sector to mitigate climate change in North-east Scotland: opportunities and challenges with particular reference to the role of forests. International Journal of Environment and Sustainable Development.. 11:274-292.
Wilson K, Sammin D, Harmeyer S, Nath M, Livingstone M, Longbottom D.  2012.  Seroprevalence of chlamydial infection in cattle in Ireland. Veterinary Journal. 193:583-585.
Dennis PG, Rushton SP, Laudicina VA, Daniell TJ, Ord V, Newsham KK, O'Donnell AG, Hopkins DW.  2012.  Soil fungal community composition does not alter along a latitudinal gradient through the maritime and sub-Antarctic. Fungal Ecology. 5:403-408.
Newton AC, Guy DC, Bengough AG, Gordon DC, McKenzie BM, Sun B, Valentine TA, Hallett PD.  2012.  Soil tillage effects on the efficacy of cultivars and their mixtures in winter barley. Field Crops Research. 128:91-100.
Nelson SE, Tisdall JM, Wilkinson K, Smith SE, McKenzie BM.  2012.  Stabilisation of soil against wind erosion by six saprotrophic fungi. Soil Biology and Biochemistry. 50:134-141.
Beattie JH, Gordon M, Duthie SJ, McNeil CJ, Horgan GW, Nixon GF, Feldmann J, Kwun I.  2012.  Suboptimal dietary zinc intake promotes vascular inflammation and atherogenesis in a mouse model of atherosclerosis. Molecular Nutrition and Food Research. 56:1097-1105.
Burgess CGS, Bartley Y, Redman E, Skuce PJ, Nath M, Whitelaw F, Tait A, Gilleard JS, Jackson F.  2012.  A survey of the trichostrongylid nematode species present on UK sheep farms and associated anthelmintic control practices. Veterinary Parasitology. 189:299-307.
Bizikova L, Nijnik M, Kluvanokova-Oravska T.  2012.  Sustaining multifunctional forestry through the developing of social capital and promoting participation: A case of multiethnic mountain communities. Small Scale Forestry Journal. 11:301-319.
Smith P, Albanito F, Bell M, Bellarby J, Blagodatskiy S, Datta A, Dondini M, Fitton N, Flynn H, Hastings A et al..  2012.  Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
Clemente MR, Bustos-Sanmamed P, Loscos J, James EK, Perez-Rontome C, Navascues J, Gay M, Becana M.  2012.  Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
Dai F, Nevo E, Wu DZ, Comadran J, Zhou MX, Qiu L, Chen ZH, Beiles A, Chen GX, Zhang GP.  2012.  Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:16969-16973.
Halliday AM, Lainson FA, Yaga R, Inglis NF, Bridgett S, Nath M, Knox DP.  2012.  Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
Podevin N, Devos Y, Davies HV, Nielsen KM.  2012.  Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
Nwankno AJ, Gordon SL, Verrall SR, Brennan RM, Hancock RD.  2012.  Treatment with fungicides influences phytochemical quality of blackcurrant juice. Annals of Applied Biology. 160:86-96.
NicDaéid NN, Meier-Augenstein W, Kemp HF, Sutcliffe OB.  2012.  Using isotopic fractionation to link precursor to product in the synthesis of (±)-mephedrone. A new tool for combating 'legal high' drugs. Analytical Chemistry. 84:8691-8696.
Bingham IJ, Hoad SP, Thomas WTB, Newton AC.  2012.  Yield response to fungicide of spring barley genotypes differing in disease susceptibility and canopy structure. Field Crops Research. 139:9-19.
2013
Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Hong-Woo C et al..  2013.  The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. Journal of Biomedical Semantics. 4
Matthews RB, Rivington M, Muhammed S, Newton AC, Hallett PD.  2013.  Adapting crops and cropping systems to future climates to ensure food security: the role of crop modelling. Global Food Security. 2:24-28.
Butterfield BJ, Cavieres LA, Callaway RM, Cook BJ, Kikvidze Z, Lortie CJ, Michalet R, Pugnaire FI, Schoeb C, Xiao S et al..  2013.  Alpine cushion plants inhibit the loss of phylogenetic diversity in severe environments. Ecology Letters. 16:478-486.
Porter R, Norman RA, Gilbert L.  2013.  An alternative to killing? Treating wildlife to protect a valuable species from a shared parasite Parasitology. 140:247-257.
Kenyon F, McBean D, Greer AW, Burgess CGS, Morrison AA, Bartley DJ, Bartley Y, Devin L, Nath M, Jackson F.  2013.  A comparative study of the effects of four treatment regimes on ivermectin efficacy, body weight and pasture contamination in lambs naturally infected with gastrointestinal nematodes in Scotland. International Journal for Parasitology - Drugs and Drug Resistance. 3:77-84.
Farruga K, Brandey K, Dawson LA, NicDaeid NN.  2013.  A comparison of enhancement techniques for footwear impressions on dark and patterned fabrics. Journal of Forensic Sciences. 58:1472-1485.
Chapman SJ, Bell JS, Campbell CD, Hudson G, Lilly A, Nolan AJ, Robertson AHJ, Potts JM, Towers W.  2013.  Comparison of soil carbon stocks in Scottish soils between 1978 and 2009. European Journal of Soil Science. 64:455-465.
Rhind SM, Kyle CE, Kerr C, Osprey M, Zhang ZL, Duff EI, Lilly A, Nolan A, Hudson G, Towers W et al..  2013.  Concentrations and geographic distribution of selected organic pollutants in Scottish surface soils. Environmental Pollution. 182:15-27.
Bartley PM, Katzer F, Rocchi MS, Maley SW, Benavides J, Nath M, Pang Y, Canton G, Thomson J, Chianini F et al..  2013.  Development of maternal and foetal immune responses in cattle following experimental challenge with Neospora caninum at day 210 of gestation. Veterinary Research. 44
Nijnik M, Pajot G, Moffat A, Slee B.  2013.  An economic analysis of the establishment of forest plantations in the United Kingdom to mitigate climatic change. Forest Policy and Economics. 26:34-42.
Knipe A, Fowler PA, Ramsay S, Haydon DT, McNeilly AS, Thirgood, S.J.; Redpath S, Newey S.  2013.  The effects of population density on the breeding performance of mountain hare Lepus timidus. Wildlife Biology. 19:473-482.
Burthe S, Newell MA, Goodman G, Butler A, Bregnballe T, Harris E, Wanless S, Cunningham EJA, Daunt F.  2013.  Endoscopy as a novel method for assessing endoparasite burdens in free-ranging European shags (Phalacrocorax aristotelis). Methods in Ecology and Evolution. 4:207-216.
Alimi NA, Bink MCAM, Dieleman JA, Nicolai M, Wubs M, Heuvelink E, Magan J, Voorrips RE, Jansen J, Rodrigues PC et al..  2013.  Genetic and QTL analyses of yield and a set of physiological traits in pepper. Euphytica. 190:181-201.
Dyer GA, Nijnik M.  2013.  Implications of carbon forestry for local livelihoods and leakage. Annals of Forest Science. 71:227-237.
Nickbakhsh S, Matthews L, Dent JE, Innocent GT, Arnold ME, Reid SWJ, Kao RR.  2013.  Implications of within-farm transmission for network dynamics: Consequences for the spread of avian influenza. Epidemics. 5:67-76.
Naz I, Palomares-Rius JE, Saifullah, Blok V, Khan MR, Ali S, Ali S.  2013.  In vitro and in planta nematicidal activity of Fumaria parviflora (Fumariaceae) against the southern root-knot nematode Meloidogyne incognita. Plant Pathology. 62:943-952.
NicDaeid NN, Jayamana S, Kerr WJ, Meier-Augenstein W, Kemp HF.  2013.  Influence of precursor solvent extraction on stable isotope signatures of methylamphetamine prepared from over-the-counter medicines using the Moscow and hypophosphorous routes. Analytical and Bioanalytical Chemistry. 405:2931-2941.
Longbottom D, Livingstone M, Maley S, van der Zon A, Rocchi M, Wilson K, Wheelhouse N, Dagleish M, Aitchison K, Wattegedera S et al..  2013.  Intranasal infection with Chlamydia abortus induces dose-dependent latency and abortion in sheep. PLoS ONE. 8:e57950.
Moro M, Fischer A, Czajkowski M, Brennan D, Lowassa A, Naiman LC, Hanley N.  2013.  An investigation using the choice experiment method into options for reducing illegal bushmeat hunting in western Serengeti. Conservation Letters. 6:37-45.
Fazey I, Evely AC, Reed MR, Stringer LC, Kruijsen JHJ, White PCL, Newsham A, Jin L, Cortazzi M, Phillipson J et al..  2013.  Knowledge Exchange: a review and research agenda for environmental management. Environmental Conservation. 40:19-36.
Nijnik M, Miller DR, Nijnik, M.; Mather A.  2013.  Linking multi-functional forestry goals with sustainable development objectives: a multi-national Q-study with a particular focus on Scotland. Journal of Settlements and Spatial Planning. 4:185-190.
Turner SP, Nath M, Horgan GW, Edwards SA.  2013.  Measuring chronic social tension in groups of growing pigs using inter-individual distances. Applied Animal Behaviour Science. 146:26-36.
Ricci P, Rooke JA, Nevison I, Waterhouse A.  2013.  Methane emissions from beef and dairy cattle: quantifying the effect of physiological stage and diet characteristics. Journal of Animal Science. 91:5379-5389.
Dennis PG, Sparrow AD, Gregorich EG, Novis P, Elberling B, Greenfield LG, Hopkins DW.  2013.  Microbial responses to carbon and nitrogen supplementation in an Antarctic dry valley soil. Soil Biology and Biochemistry. 25:55-61.
Porter R, Norman RA, Gilbert L.  2013.  A model to test how ticks and louping ill virus can be controlled by treating red grouse with acaricide. Medical and Veterinary Entomology. 27:237-246.
Nechwatal J, Bakonyi J, Cacciola SO, Cooke DEL, Jung T, Nagy ZA, Vannini A, Vettraino AM, Brasier CM.  2013.  The morphology, behaviour and molecular phylogeny of Phytophthora taxon Salixsoil and its redesignation as Phytophthora lacustris sp nov. Plant Pathology. 62:355-369.
Yao HY, Campbell CD, Chapman SJ, Freitag TE, Nicol GW, Singh BK.  2013.  Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey. Environmental Microbiology. 15:2545-2556.
Perry JN, Arpaia S, Bartsch D, Birch ANE, Devos Y, Gathmann A, Gennaro A, Kiss J, Messean A, Mestdagh S et al..  2013.  No evidence requiring change in the risk assessment of Inachis io larvae. Ecological Modelling. 268:103-122.
Sukganah A, Choong CY, Russell J, Neale D, Wickneswari R.  2013.  Nucleotide sequence analysis of two lignin genes in Acacia auriculiformis x Acacia mangium hybrid for enhancement of wood pulp quality. Tree Genetics and Genome. 9:1369-1381.
Carvalho A, Ribeiro H, Mayes R, Guedes A, Abreu I, Noronha F, Dawson LA.  2013.  Organic matter characterization of sediments in two river beaches from Northern Portugal for forensic application. Forensic Science International. 233:403-415.
Nuhn ME, Binder M, Taylor AFS, Halling RE, Hibbett DS.  2013.  Phylogenetic overview of the Boletineae. Fungal Biology. 117:479-511.
Ghee C, Neilson R, Hallett PD, Robinson D, Paterson E.  2013.  Priming of soil organic matter mineralisation is intrinsically insensitive to temperature. Soil Biology and Biochemistry. 66:20-28.
Phillips D, Wnetrzak J, Nibau C, Barakate A, Ramsay L, Wright F, Higgins JD, Perry RM, Jenkins G.  2013.  Quantitative high resolution mapping of HvMLH3 foci in barley pachytene nuclei reveals a strong distal bias and weak interference. Journal of Experimental Botany. 64:2139-2154.
Podevin N, Davies HV, Hartung F, Nogue F, Casacuberta JM.  2013.  Site-directed nucleases, a paradigm shift in predictable, knowledge-based plant breeding. Trends in Biotechnology. 31:373-383.
Bender FS, Plantenga F, Neftel A, Jocher M, Oberholzer HR, Kohl L, Giles M, Daniell T, Van der Heijden MGA.  2013.  Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. ISME Journal. 8:1336-1345.
Koljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AFS, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM et al..  2013.  Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology. 22:5271-5277.
Wells B, Innocent GT, Eckersall PD, McCulloch E, Nisbet AJ, Burgess STG.  2013.  Two major ruminant acute phase proteins, haptoglobin and serum amyloid A, as serum biomarkers during active sheep scab infestation. Veterinary Research. 44:103.
Thuenemann EC, Lenzi P, Love AJ, Taliansky M, Becares M, Zuniga S, Enjuanes L, Zahmanova GG, Minkov IN, Matic S et al..  2013.  The use of transient expression systems for the rapid production of virus-like particles in plants. Current Pharmaceutical Design. 19:5564-5573.
2014
Bogdanova MI, Wanless S, Harris MP, Lindstrom J, Butler A, Newell MA, Sato K, Watanuki Y, Parsons M, Daunt F.  2014.  Among-year and within-population variation in foraging distribution of European shags Phalacrocorax aristotelis over two decades: implications for marine spatial planning. Biological Conservation. 170:292-299.
Neacsu M, Fyfe C, Horgan G, Johnstone AM.  2014.  Appetite control and biomarkers of satiety with vegetarian (soy) and meat-based high-protein diets for weight loss in obese men: a randomized crossover trial. American Journal of Clinical Nutrition. 100:548-558.
Mitchell RJ, Beaton JK, Bellamy PE, Broome A, Chetcuti J, Eaton S, Ellis CJ, Gimona A, Harmer R, Hester AJ et al..  2014.  Ash dieback in the UK: a review of the ecological and conservation implications and potential management options. Biological Conservation. 175:95-109.
Beesley L, Inneh OS, Norton GJ, Moreno-Jimenez E, Pardo T, Clemente R, Dawson JJC.  2014.  Assessing the influence of compost and biochar amendments on the mobility and toxicity of metals and arsenic in a naturally contaminated mine soil. Environmental Pollution. 186:195-202.
Burthe SJ, Wanless S, Newell MA, Butler A, Daunt F.  2014.  Assessing the vulnerability of the marine bird community in the western North Sea to climate change and other anthropogenic impacts. Marine Ecology Progress Series. 507:277-295.
Banwart S, Black HIJ, Cai ZC, Gicheru P, Joosten H, Victoria R, Milne E, Noellemeyer E, Pascual U, Nziguheba G et al..  2014.  Benefits of soil carbon: report on the outcomes of an international scientific committee on problems of the environment rapid assessment workshop. Carbon Management. 5:185-192.
Fielding D, Newey S, van der Wal R, Irvine RJ.  2014.  Carcass provisioning to support scavengers: evaluating a controversial nature conservation practice. Ambio. 43:810-819.
Bizikova L, Crawford E, Nijnik M, Swart R.  2014.  Climate change adaptation planning in agriculture: processes, experiences and lessons learned from early adapters. Mitigation and Adaptation Strategies for Global Change. 19:411-430.
Brown EM, Nitecki S, Pereira-Caro G, McDougall GJ, Stewart D, Rowland I, Crozier A, Gill CIR.  2014.  Comparison of in vivo and in vitro digestion on polyphenol composition in lingonberries: potential impact on colonic health. Biofactors. 40:611-623.
Pertry I, Nothegger C, Sweet J, Kuiper H, Davies HV, Iserentant D, Hull R, Mezzetti B, Messens K, De Loose M et al..  2014.  DTREEv2, a computer-based support system for the risk assessment of genetically modified plants. New Biotechnology. 31:166-171.
Mazur SP, Sonsteby A, Nes A, Wold AB, Foito A, Freitag S, Verrall S, Stewart D, Heide OM.  2014.  Effects of Post-Flowering Environmental Variation along an Altitudinal Gradient on Chemical Composition of 'Glen Ample' Red Raspberry (Rubus idaeus L.). European Journal of Horticultural Science. 79:267-277.
Searle KR, Barber J, Stubbins F, Labuschagne K, Carpenter S, Butler A, Denison E, Sanders C, Mellor PS, Wilson A et al..  2014.  Environmental drivers of Culicoides phenology: how important is species-specific variation when determining disease policy? PLoS One. 9:e111876.
Nath M, Singh BP, Saxena VK.  2014.  Estimation of crossbreeding parameters for humoral response in broiler. Livestock Science. 170:8-15.
de Ruiter H, Kastner T, Nonhebel S.  2014.  European dietary patterns and their associated land use: Variation between and within countries. Food Policy. 44:158-166.
Fischer A, Naiman LC, Lowassa A, Randall D, Rentsch D.  2014.  Explanatory factors for household involvement in illegal bushmeat hunting around Serengeti, Tanzania. Journal for Nature Conservation. 22:491-496.
Bizikova L, Nijnik M, Nijnik, M.; Mather A.  2014.  Exploring institutional changes in agriculture to inform adaptation planning to climate change in transition countries. Mitigation and Adaptation Strategies for Global Change. Published online..
Naik L, Gebreegziabher Z, Tumwesige V, Balana BB, Mwirigi J, Austin G.  2014.  Factors determining the stability and productivity of small scale anaerobic digesters. Biomass and Bioenergy. 70:51-57.
George TS, Hawes C, Newton AC, McKenzie BM, Hallett PD, Valentine TA.  2014.  Field phenotyping and long-term platforms to characterise how crop genotypes interact with soil processes and the environment. Agronomy. 4:242-278.
Matthews RB, van Noordwijk M.  2014.  From euphoria to reality on efforts to reduce emissions from deforestation and forest degradation (REDD+). Mitigation and Adaptation Strategies for Global Change. 19:615-620.
Looseley ME, Keith R, Guy D, Barral-Baron G, Thirugnanasambandam A, Harrap D, Werner P, Newton AC.  2014.  Genetic mapping of resistance to Rhynchosporium commune and characterisation of early infection in a winter barley mapping population. Euphytica. Published online.
Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok VC, Cock PJA et al..  2014.  The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology. 15
Konecna E, Safarova D, Navratil M, Hanacek P, Coyne C, Flavell A, Vishnyakova M, Ambrose M, Redden R, Smykal P.  2014.  Geographical gradient of the eIF4E alleles conferring resistance to potyviruses in pea (Pisum) germplasm. PLoS ONE. 9:e90394-e90394.
Nijnik M, Nijnik, M.; Mather A, Bergsma E, Matthews R.  2014.  Heterogeneity of experts' opinion regarding opinion regarding opportunities and challenges of tackling defrestation in the tropics: a Q methodology application. Mitigation and Adaptation Strategies for Global Change. 19:621-640.
Deng H, Ma L, Bandaranayaka N, Qin ZW, Mann G, Kyeremeh K, Yu Y, Shepherd T, Naismith JH, O'Hagan D.  2014.  Identification of fluorinases from Streptomyces sp MA37, Norcardia brasiliensis, and Actinoplanes sp N902-109 by genome mining. ChemBioChem. 15:364-368.
Matthews RB, van Noordwijk M, Lambin E, Meyfroidt P, Gupta J, Verchot L, Veldkamp E, Hergoualc'h K.  2014.  Implementing REDD+ (Reducing Emissions from Deforestation and Degradation): evidence on governance, evaluation and impacts from the REDD-ALERT project. Mitigation and Adaptation Strategies for Global Change. 19:907-925.
Hannam KD, Neilsen GH, Neilsen D, Rabie WS, Midwood AJ, Millard P.  2014.  Late-season foliar urea applications can increase berry yeast-assimilable nitrogen in winegrapes (Vitis vinifera L.). American Journal of Enology and Viticulture. 65:89-95.
Buccianti A, Nisi B, Martin-Fernandez JA, Palarea-Albaladejo J.  2014.  Methods to investigate the geochemistry of groundwaters with values for nitrogen compounds below the detection limit. Journal of Geochemical Exploration. 141:78-88.
Chen X, Daniell TJ, Neilson R, O'Flaherty V, Griffiths BS.  2014.  Microbial and microfaunal communities in phosphorus limited, grazed grassland change composition but maintain homeostatic nutrient stoichiometry. Soil Biology and Biochemistry. 75:94-101.
Helliwell RC, Aherne J, Nisbet TR, MacDougall G, Broadmeadow S, Sample J, Jackson-Blake L, Doughty R.  2014.  Modelling the long-term response of stream water chemistry to forestry in Galloway, Southwest Scotland. Ecological Indicators. 37:396-411.
Wiesel L, Newton AC, Elliot I, Booty D, Gilroy EM, Birch PRJ, Hein I.  2014.  Molecular effects of resistance elicitors from biological origin and their potential for crop protection. Frontiers in Plant Science. 5
Chmielewska B, Janiak A, Karcz J, Guzy-Wrobelska J, Forster BP, Nawrot M, Rusek A, Smyda P, Kedziorski P, Maluszynski M et al..  2014.  Morphological, genetic and molecular characteristics of barley root hair mutants. Journal of Applied Genetics. 55:433-447.
van Noordwijk M, Matthews RB, Agus F, Farmer J, Verchot L, Hergoualc'h K, Persch S, Tata HL, Khasanah NM, Widayati A et al..  2014.  Mud, muddle and models in the knowledge value-chain to action on tropical peatland conservation. Mitigation and Adaptation Strategies for Global Change. 19:887-905.
Helliwell RC, Aherne J, MacDougall G, Nisbet TR, Lawson D, Cosby BJ, Evans CD.  2014.  Past acidification and recovery of surface waters, soils and ecology in the United Kingdom: Prospects for the future under current deposition and land use protocols. Ecological Indicators. 37:381-395.
Bewley MA, Naughton M, Preston J, Mitchell A, Holmes A, Marriott HM, Read RC, Mitchell TJ, Whyte MKB, Dockrell DH.  2014.  Pneumolysin activates macrophage lysosomal membrane permeabilization and executes apoptosis by distinct mechanisms without membrane pore formation. mBio. 5:e01710-14.
Hudson LN, Newbold T, Contu S, Hill SLL, Lysenko I, De Palma A, Phillips HRP, Senior RA, Bennett DJ, Booth H et al..  2014.  The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts. Ecology and Evolution. 4:4701-4735.
Gebreegziabher Z, Naik L, Melamu R, Balana BB.  2014.  Prospects and challenges for urban application of biogas installations in Sub-Saharan Africa. Biomass and Bioenergy. 70:130-140.
Dunn SM, Sample J, Potts J, Abel C, Taylor C, Cook Y, Napier F, Vinten AJA.  2014.  Recent trends in water quality in an agricultural catchment in Eastern Scotland: elucidating the roles of hydrology and land use. Environmental Science: Processes and Impacts. 16:1659-1675.
Hindle MM, Martin SF, Noordally ZB, van Ooijen G, Barrios-Llerena ME, Simpson TI, Le Bihan T, Millar AJ.  2014.  The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species. BMC Genomics. 15:640.
Matthews RB, van Noordwijk M.  2014.  Reducing emissions from deforestation and degradation (REDD+): Lessons learnt in Indonesia, Vietnam, Cameroon and Peru. Mitigation and Adaptation Strategies for Global Change. 19
Skelsey P, Newton AC.  2014.  Scale-dependent assessment of relative disease resistance to plant pathogens. Agronomy. 4:178-190.
Ball BC, Griffiths BS, Topp CFE, Wheatley R, Walker RL, Rees RM, Watson CA, Gordon H, Hallett PD, McKenzie BM et al..  2014.  Seasonal nitrous oxide emissions in field soils under soil management of reduced tillage, compost application or organic farming. Agriculture, Ecosystems and Environment. 189:17-180.
Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou RN, Steuernagel B, Gundlach H, Taudien S et al..  2014.  A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms. Plant Physiology. 164:412-423.
Mwirigi J, Balana BB, Mugisha J, Walekhwa P, Melamu R, Nakami S, Makenzi P.  2014.  Socio-economic hurdles to widespread adoption of small-scale biogas digesters in Sub-Saharan Africa : a review. Biomass and Bioenergy. 70:17-25.
Muller B, Balbi S, Buchmann CM, de Sousa L, Dressler G, Groeneveld J, Klassert CJ, Bao Le Q, Millington JDA, Nolzen H et al..  2014.  Standardized and transparent model descriptionsfor agent-based models - current status and prospects. Environmental Modelling and Software. 55:156-163.
George TS, Brown LK, Ramsay L, White PJ, Newton AC, Bengough AG, Russell J, Thomas WTB.  2014.  Understanding the genetic control and physiological traits associated with rhizosheath production by barley (Hordeum vulgare L.). New Phytologist. 203:195-205.
2015
Sarkki S, Tinch R, Niemelä J, Heink U, Waylen KA, Timaeus J, Young JC, Watt AD, Neßhöver C, Van Den Hove S.  2015.  Adding ‘iterativity’ to the credibility, relevance, legitimacy: A novel scheme to highlight dynamic aspects of science-policy interfaces. Environmental Science and Policy. 54:505-512.
Travis AJ, Norton GJ, Datta S, Sarma R, Dasgupta T, Savio FL, Macaulay M, Hedley PE, McNally KL, Sumon MH et al..  2015.  Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. Rice. 8
Zhang RX, Calixto CPG, Tzioutziou NA, James AB, Simpson CG, Guo WB, Marquez Y, Kalyna M, Patro R, Eyras E et al..  2015.  AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist. 208:96-101.
Sarkki S, Ficko AJ, Grunewald K, Nijnik M.  2015.  Benefits from and threats to European treeline ecosystem services: an exploratory study of stakeholders and governance. Regional Environmental Change. Published online.
Madigan A, Belka M, Taylor AFS, Kirisits T, Cleary M, Nguyen D, Elfstrand M, Woodward S.  2015.  Can Hymenoscyphus fraxineus infect hardy members of the Oleaceae other than ash species? Forest Pathology. 45:426-429.
Quilliam RS, van Niekerk MA, Chadwick DR, Cross P, Hanley N, Jones DL, Vinten AJA, Olivers DM.  2015.  Can macrophyte harvesting from eutrophic water close the loop on nutrient loss from agricultural land? Journal of Environmental Management. 152:210-217.
Ewert F, Rotter RP, Bindi M, Webber H, Trnka M, Kersebaum KC, Olesen JE, Van Ittersum MK, Janssen S, Rivington M et al..  2015.  Crop modelling for integrated assessment of risk to food production from climate change. Environmental Modelling and Software. 72:287-303.
Wiesel L, Daniell TJ, King D, Neilson R.  2015.  Determination of the optimal soil sample size to accurately characterise nematode communities in soil. Soil Biology and Biochemistry. 80:89-91.
Destefanis M, Nagy I, Rigney B, Bryan GJ, McLean K, Hein I, Griffin D, Milbourne D.  2015.  A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages. BMC Plant Biology. 15
Thomas D, Finan C, Newport MJ, Jones S.  2015.  DNA-entropy reveals a significant difference in complexity between housekeeping and tissue specific gene promoters. Computational Biology and Chemistry. 58:19-24.
Phillips D, Jenkins G, Macaulay M, Nibau C, Wnetrzak J, Fallding D, Colas I, Oakey H, Waugh R, Ramsay L.  2015.  The effect of temperature on the male and female recombination landscape of barley. New Phytologist. 208:421-429.
Zhao G, Hoffmann H, van Bussel LGJ, Enders A, Specka X, Sosa C, Yeluripati JB, Tao FL, Constantin J, Raynal H et al..  2015.  Effect of weather data aggregation on regional crop simulation for different crops, production conditions, and response variables. Climate Research. 65:141-157.
Kikvidze Z, Brooker RW, Butterfield BJ, Callaway RM, Cavieres LA, Cook BJ, Lortie CJ, Michalet R, Pugnaire FI, Xiao S et al..  2015.  The effects of foundation species on community assembly: a global study on alpine cushion plant communities. Ecology. 96:2064-2069.
Brown SM, Klaffenbock M, Nevison IM, Lawrence AB.  2015.  Evidence for litter differences in play behaviour in pre-weaned pigs. Applied Animal Behaviour Science. 172:17-25.
Pourkheirandish M, Hensel G, Kilian B, Senthil N, Chen G, Sameri M, Azhaguvel P, Sakuma S, Dhanagond S, Sharma R et al..  2015.  Evolution of the seed dispersal system in barley. Cell. 162:527-539.
Bizikova L, Nijnik M, Nijnik, M.; Mather A.  2015.  Exploring institutional changes in agriculture to inform adaptation planning to climate change in transition countries. Mitigation and Adaptation Strategies for Global Change. 20:1385-1406.
Skelsey P, Newton AC.  2015.  Future environmental and geographic risks of Fusarium head blight of wheat in Scotland. European Journal of Plant Pathology. 142:133-147.
Looseley ME, Keith R, Guy D, Barral-Baron G, Thirugnanasambandam A, Harrap D, Werner P, Newton AC.  2015.  Genetic mapping of resistance to Rhynchosporium commune and characterisation of early infection in a winter barley mapping population. Euphytica. 203:337-347.
Nijnik M.  2015.  Highly regarded Ukrainian forester passes away. Forestry Chronicle. 91:119.
Prager K, Nienaber B, Neumann B, Phillips A.  2015.  How should rural policy be evaluated if it aims to foster community involvement in environmental management? Journal of Rural Studies. 37:120-1`31.
Bartley K, Wright HW, Huntley JF, Manson EDT, Inglis NF, McLean K, Nath M, Bartley Y, Nisbet AJ.  2015.  Identification and evaluation of vaccine candidate antigens from the poultry red mite (Dermanyssus gallinae). International Journal for Parasitology, 45, 819-830..
Schoeb C, Kerle S, Karley AJ, Morcillo L, Pakeman RJ, Newton AC, Brooker RW.  2015.  Intraspecific genetic diversity and composition modify species-level diversity-productivity relationships. New Phytologist. 205:720-730.
Littlewood NA, Nau BS, Pozsgai G, Stockan JA, Stubbs A, Young MR.  2015.  Invertebrate species at risk from ash dieback in the UK. Journal of Insect Conservation. 19:75-85.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.