Publications list
Filters: First Letter Of Last Name is O [Clear All Filters]
Y Species composition of coastal dune vegetation in Scotland has proved resistant to climate change over a third of a century. Global Change Biology. 21:3738-3747.
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2015.
Xiphinema krugi, species complex or complex of cryptic species? Journal of Nematology. 38:418-428. Abstract
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2006.
Whole-genome association mapping in elite inbred crop varieties. Genome. 53:967-972.
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2010.
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2013.
What is the potential for biogas digesters to improve soil fertility and crop production in Sub-Saharan Africa? Biomass and Bioenergy. 70:58-72.
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2014.
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2014.
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2020.
The Weaklaw Vent, SE Scotland: Metasomatism of eruptive products by carbo-hydro-fluids of probable mantle origin. Mineralogical Magazine. 83:855-867.
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2019.
Waste recovered by-products can increase growth of grass-clover mixtures in low fertility soils and alter botanical and mineral nutrient composition. Annals of Applied Biology. 166:105-117.
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2015.
Virus-host interactions during movement processes. Plant Physiology. 138:1815-1821. Abstract
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2005.
Vegetation impact on the hydrology of an aeolian sandy soil in a continental climate. Ecohydrology. 3:413-420.
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2010.
The utility of spatial data to delineate river riparian functions and management zones: a review. Science of the Total Environment. 757:ArticleNo.143982.
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2021.
Using species records and ecological attributes of bryophytes to develop an ecosystem health indicator. Ecological Indicators. 104:127-136.
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2019.
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2018.
Using historical climate observations to understand future climate change crop yield impacts in the Southeastern US. Climatic Change. 134:311-326.
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2016.
Using artificial fluorescent particles as tracers of livestock wastes within an agricultural catchment. Science of the Total Environment. 409:1095-1103.
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2011.
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2012.
Use of artificial neural networks in measuring characteristics of shielded radioactive plutonium for arms control. Journal of Analytical Atomic Spectrometry.. 27:432-439.
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2012.
Unraveling the structure of viral replication complexes at super-resolution. Frontiers in Plant Science. 4
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2013.
Understanding the economic value of water ecosystem services from tropical forests: a systematic review for South and Central America. Journal of Forest Economics. 21:97-106.
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2015.
Understanding the economic barriers to the adoption of agroforestry A Real Options analysis. Journal of Environmental Management. 302
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2021.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
Ubiquitination in plant meiosis: recent advances and high throughput methods. Frontiers in Plant Science. 12:ArticleNo.667314.
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2021.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
Two plant-viral movement proteins traffic in the endocytic recycling pathway. Plant Cell. 17:164-181. Abstract
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2005.
Twenty three unsolved problems in hydrology (UPH) - a community perspective. Hydrological Sciences Journal.. 64:1141-1158.
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2019.
tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species. PLoS ONE. 9:e102502.
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2014.
Transparent soil microcosms allow 3D spatial quantification of soil microbiological processes in vivo. Plant Signaling and Behavior. 9
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2014.
Transparent soil for imaging the rhizosphere. PLoS ONE. 7:e44276.
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2012.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
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2022.
Tracking the green invaders: advances in imaging virus infection in plants. Biochemical Journal. 430:21-37.
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2010.
Tracking (poly)phenol components from raspberries in ileal fluid. Journal of Agricultural and Food Chemistry. 62:7631-7641.
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2014.
Tracing the ancestry of modern bread wheats. Nature Genetics. 51:905-911.
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2019.
TRA1: A locus responsible for controlling agrobacterium-mediated transformability in barley. Frontiers in Plant Science. 11:ArticleNo.355.
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2020.
Towards a complete soil C and N cycle: incorporating the soil fauna. Ecology. 88:1611-1621.
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2007.
The TGB1 movement protein of potato virus X reorganises actin and endomembranes into the X--body, a viral replication factory. Plant Physiology. 158:1359-1370.
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2012.
Temperature effects on fish production across a natural thermal gradient. Global Change Biology. 22:3206-3220.
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2016.
Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.
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2011.
Temperate airborne grass pollen defined by spatio-temporal shifts in community composition. Nature Ecology and Evolution. 3:750-754.
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2019.
Taxonomy of Longidorid nematodes and dichotomous keys for the identification of Xiphinema and Xiphidorus species recorded in Brazil. Arquivos Instituto Biologico. 73:131-141.
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2006.
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2018.
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2018.
Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Addendum. Plant Signaling & Behaviour. 2:180-181. Abstract
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2007.
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2007.
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2011.
A tale of two eras: Phytoplankton composition influenced by oceanic paleochemistry. Geobiology. 16:498-506.
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2018.
A systematic review of methods for studying the impacts of outdoor recreation on terrestrial wildlife. Global Ecology and Conservation. 22:ArticleNo.e00917.
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2022.
A synthetic system for expression of components of a bacterial microcompartment. Microbiology-SGM. 159:2427-2436.
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2013.
The synaptonemal complex protein ZYP1 is required for imposition of meiotic crossovers in barley. The Plant Cell. 26:729-740.
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2014.
Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. ISME Journal. 8:1336-1345.
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2013.
Swansong biospheres: refuges for life and novel microbial biospheres on terrestrial planets near the end of their habitable lifetimes. International Journal of Astrobiology. 12:99-112.
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2013.
Swansong biospheres II: the final signs of life on terrestrial planets near the end of their habitable lifetimes. International Journal of Astrobiology. 13:229-243.
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2014.
A survey of root knot nematodes and resistance to Meloidogyne incognita in sweet potato varieties from Kenyan fields. Crop Protection. 92:114-121.
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2017.
Supporting the role of small farms in the European regional food systems: What role for the science-policy interface? Global Food Security. 28:ArticleNo.100433.
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2021.
A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Current Biology. 22:1595-1600.
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2012.
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2021.
Suitability of enzyme activities for the monitoring of soil quality improvement in organic agricultural systems. Soil Biology & Biochemistry. 40:2137-2145. Abstract
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2008.
Stream hydraulics and temperature determine the metabolism of geothermal Icelandic streams. Knowledge Management of Aquatic Ecosystem. 402:17pp.
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2011.
Stimulation of homologous recombination in plants expressing heterologous recombinases. BMC Plant Biology. 20:ArticleNo.336.
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2020.
Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
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2005.
Spray induced gene silencing an innovative strategy for plant trait improvement and disease control. Crop Breeding and Applied Biotechnology.
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2021.
Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
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2009.
A spatio-temporal analysis of a New Zealand flatworm (Arthurdendyus triangulatus) population in western Scotland. Annals of Applied Biology. 147:81-88. Abstract
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2005.
Spatially segregated foraging patterns of moose (Alces alces) and mountain hare (Lepus timidus) in a subarctic landscape: different tables in the same restaurant? Canadian Journal of Zoology. 93:391-396.
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2015.
Spatial variability of water repellency in pine forest soil. Soil and Water. 3:S123-S129. Abstract
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2008.
Spatial turnover in the global avifauna. Proceedings of the Royal Society of London, B. 274(1618):1567-1574.
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2007.
Spatial pattern and species richness of boreonemoral forest understorey and its determinants - A comparison of differently managed forests. Forest Ecology & Management. 250:64-70. Abstract
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2007.
Soil pore volume and the abundance of soil mites in two contrasting habitats. Soil Biology and Biochemistry. 40(6):1538-1541.
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2008.
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2015.
Soil organic carbon sequestration and mitigation potential in a rice cropland in Bangladesh - a modelling approach. Field Crops Research. 226:16-27.
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2018.
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2009.
Soil organic carbon (SOC) equilibrium and model initialisation methods: an application to the Rothamsted carbon (RothC) model. Environmental Modeling and Assessment. 22:215-239.
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2017.
Soil nematode abundance and functional group composition at a global scale. Nature. 572:194-198.
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2019.
Soil microarthropod assemblages under different arable crop rotations in Alberta, Canada. Applied Soil Ecology. 38(1):71-78.
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2008.
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2017.
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2012.
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2009.
Soil carbon 4 per mille. Geoderma. 292:59-86.
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2017.
Soil biota, carbon cycling and crop plant biomass responses to biochar in a temperate mesocosm experiment. Plant and Soil. 440:341-356.
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2019.
Soil amendment affects Cd uptake by wheat - are we underestimating the risks from chloride inputs? Science of the Total Environment. 554:349-357.
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2016.
Social tipping dynamics for stabilizing Earth's climate by 2050. Proceedings of the National Academy of Sciences of the United States of America. 117:2354-2365.
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2020.
Social innovation in community energy in Europe: a review of the evidence. Frontiers in Energy Research: Energy Systems and Policy. Published online.. 7:ArticleNo.31.
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2019.
Small scale farmers in Asia with an emphasis on livestock. Academic Journal of Kanchanaburi Rajabhat University, August 2012..
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2012.
Single nucleotide polymorphism assay to distinguish barley (Hordeum vulgare L.) varieties in support of seed certification. Genetic Resources and Crop Evolution. 66:1243-1256.
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2019.
Simultaneous extraction and determination of various pesticides in environmental waters. Journal of Separation Science. 37:3699-3705.
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2014.
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2011.
Simulation of soil organic carbon effects on long-term winter wheat (Triticum aestivum) production under varying fertilizer inputs. Frontiers in Plant Science. 9:ArticleNo.1158.
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2018.
Signatures of adaptation to plant parasitism in nematode genomes. Parasitology. 142:S71-S84.
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2015.
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2013.
Shoot zinc (Zn) concentration varies widely within Brassica oleracea L. and is affected by soil Zn and phosphorus (P) levels. Journal of Horticultural Science & Biotechnology. 85:375-380.
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2010.
Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.
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2009.
Sheep-urine-induced changes in soil microbial community structure. FEMS Microbiology Ecology. 56:310-320. Abstract
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2006.
Sheep urine deposition is a source of heterogeneity in upland grassland soil microbial community structure. FEMS Microbiology Ecology. 56(2):310-320.
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2006.
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2016.
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2019.
Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.
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2009.
Sentinel systems on the razor's edge: effects of warming on Arctic geothermal stream ecosystems. Global Change Biology. 16(7):1979-1991.
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2010.
Selective pressured liquid extraction of estrogenic compounds in soil and analysis by gas chromatography - mass spectrometry. Analytica Chimica Acta. 685:29-35.
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2011.
Securing the future of US agriculture: The case for investing in new entry sustainable farmers. Elementa - Science of the Anthropocene. 7:ArticleNo.17.
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2019.
Seasonal changes in pasture biomass, production and offtake under the transhumance system in northern Pakistan. Journal of Arid Environments. 67(4):641-660.
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2006.
Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract
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2007.
Scotland's natural capital asset index: tracking nature's contribution to national wellbeing. Ecological Indicators. 107:ArticleNo.105645.
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2019.
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2012.
Rubus fruit juices affect lipid peroxidation in a Drosophila melanogaster model in vivo.. Journal of Agricultural and Food Chemistry. 53:7728-7733. Abstract
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2005.
Root-lesion nematodes of potato: current status of diagnostics, pathogenicity and management. Plant Pathology, Published online..
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2020.
Root herbivores drive changes to plant primary chemistry, but root loss is mitigated under elevated atmospheric CO2. Frontiers in Plant Science. 7
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2016.
Role of lipopolysaccharide and biofilm formation during endophytic colonization of rice (Oryza sativa L.) and nodulation of Sesbania cannabina by Rhizodium sp. IRBG74. Journal of Experimental Botany. 67:5869-5884.
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2016.
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2006.
The role of free radicals in brassica-induced anaemia of sheep: an ESR spin trapping study. Asian-Australiasian Journal of Animal Sciences. 25:1404-1410.
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2012.
The role of ecosystems and their management in regulating climate, and soil, water and air quality. Journal of Applied Ecology. 50:812-829.
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2013.
The role of cultural ecosystem services in landscape management and planning. Current Opinion in Environmental Sustainability. 14:28-33.
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2015.
RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family. Plant Biotechnology Journal.. 17:594-607.
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2019.
Riverbeds demarcate distinct conservation units of the radiated tortoise (Geochelone radiata) in southern Madagascar. Conservation Genetics. 8(4):797-807.
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2007.
Risk perception - Issues for flood management in Europe. Natural Hazards and Earth System Sciences. 12:2299-2309.
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2012.
Risk estimation and annual fluxes of emerging contaminants from a Scottish priority catchment to the estuary and North Sea. Environmental Geochemistry and Health. 40:1987-2005.
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2018.
Rising temperatures reduce global wheat production. Nature Climate Change. 5:143-147.
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2015.
Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations. Journal of Nematology. 38:404-410. Abstract
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2006.
Rhynchosporium leaf scald disease incidence: seed source and spatial pattern. Plant Pathology. 68:1179-1187.
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2019.
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2016.
Revisiting herbage sample collection and preparation procedures to minimise risks of trace element contamination. European Journal of Agronomy. 43:33-39.
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2012.
A review of economic approaches modeling the complex interactions between forest management and watershed services. Forest Policy and Economics. 100:164-176.
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2019.
Results of the 3rd Reynolds Cup contest in quantitative mineral analysis. Clays and Clay Minerals. 54(6):748-760.
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2006.
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2011.
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2015.
Resistance, epidemiology and sustainable management of Rhynchosporium secalis populations on barley. Plant Pathology. 57:1-14. Abstract
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2008.
Resistance to powdery mildew in Spanish barley landraces is controlled by different sets of quantitative trait loci. Theoretical and Applied Genetics. 123:1019-1028.
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2011.
Replication and trafficking of a plant virus are coupled at the entrances of plasmodesmata. Journal of Cell Biology. 201:981-995.
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2013.
Relationships between structure and function in streams contrasting in temperature: possible impacts of climate change on running water ecosystems. Freshwater Biology. 54(10):2051-2068.
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2009.
Rejoinder to Comments on Minasny et al., 2017 Soil carbon 4 per mille. Geoderma, 292, 59-86. Geoderma. 309:124-129.
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2018.
Rejoinder to Comments on Minasny et al., 2017 Soil carbon 4 per mille. Geoderma, 292, 59-86. Geoderma. 309:124-129.
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2018.
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2020.
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2014.
Recovery of biochemical functionality in polluted flood-plain soils: The role of microhabitat differentiation through revegetation and rehabilitation of the river dynamics. Soil Biology & Biochemistry. 40:2088-2097. Abstract
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2008.
Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.
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2010.
The rational simplification of a recombinant cocktail vaccine to control the parasitic nematode Teladorsagia circumcincta. International Journal for Parasitology. 49:257-265.
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2019.
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2015.
A rapid diagnostic for detection of Aphelenchoides besseyi and A. fujianensis based on real-time PCR. Plant Disease. 102:519-526.
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2018.
Ranking the value of germplasm: new oil palm (Elaeis guineensis) breeding stocks as a case study. Annals of Applied Biology. 160:145-156.
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2012.
A randomised controlled trial comparing a dietary antiplatelet, the water-soluble tomato extract Fruitflow, with 75mg aspirin in healthy subjects. European Journal of Clinical Nutritiion. 71:723-730.
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2017.
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2016.
Quantifying uptake rate of potassium from soil in a long-term gras rotation experiment. Plant and Soil. 335(1-2):3-19.
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2010.
Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
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2015.
Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
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2016.
Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44:1176-1187. Abstract
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2007.
Quantifying and mitigating wind-induced undercatch in rainfall measurements. Water Resources Research. 54:3863-3875.
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2018.
Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
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2010.
Public evaluation of landscape content and change: Several examples from Europe. Land Use Policy. 26:77-86.
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2008.
A proteomic and targeted metabolomic approach to investigate change in Lolium perenne roots when challenged with glycine. Journal of Experimental Botany. 58(7):1581-1590.
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2007.
Protection of ewes against Teladorsagia circumcincta infection in the periparturient period by vaccination with recombinant antigens. Veterinary Parasitology. 228:130-136.
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2016.
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2009.
Process-based principles for restoring river ecosystems. BioScience. 60(3):209-222.
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2010.
Prepubertal gonadotropin-releasing hormone analog leads to exagerrated behavioral and emotional sex differences in sheep. Hormones and Behavior. 59:22-27.
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2011.
Preparing interdisciplinary leadership for a sustainable future. Sustainability Science..
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2020.
Pregnant ewes exposed to multiple endocrine disrupting pollutants through sewage sludge-fertilised pasture show an anti-estrogenic effect in their trabecular bone. The Science of the Total Environment. 408:2340-2346.
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2010.
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2012.
Predicting the severity of the grass pollen season and the effect of climate change in Northwest Europe. Science Advances. 7:ArticleNo.eabd7658.
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2021.
Predicting dates of head initiation and yields of broccoli crops grown throughout Scotland. European Journal of Agronomy. 116:ArticleNo.126055..
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2020.
The potential of runoff attenuation features as a Natural Flood Management approach. Journal of Flood Risk Management.. 13:ArticleNo.e12565.
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2020.
The potential for polyphosphate metabolism in Archaea and anaerobic polyphosphate formation in Methanosarcina mazei. Scientific Reports. 9:ArticleNo.17101.
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2019.
Potential environment and public health risk due to contamination of heavy metals from industrial waste water in Lam Thao, Phu Tho, Vietnam. American Journal of Environmental Sciences. 8:71-78.
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2012.
Potassium release and fixation as a function of fertilizer application rate and soil parent material. Geoderma. 140(1-2):188-198.
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2007.
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2021.
Pollinator-flower interactions in gardens during the COVID19 pandemic lockdown of 2020. Journal of Pollination Ecology.
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2022.
Pollinator monitoring more than pays for itself. Journal of Applied Ecology.
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2020.
Pollinator monitoring more than pays for itself. Journal of Applied Ecology. 58:44-57.
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2021.
Policy-driven monitoring and evaluation: does it support adaptive management of socio-ecological systems? Science of the Total Environment. 662:373-384.
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2019.
Plausible self-reported dietary intakes in a residential facility are not necessarily reliable. European Journal of Clinical Nutrition. 70:130-135.
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2016.
Platelet-derived microparticle count and surface molecule expression differ between subjects with and without type 2 diabetes, independently of obesity status. Journal of Thrombosis and Thrombolysis. 37:455-463.
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2014.
Plant parasitic nematode assemblages associated with sweet potato in Kenya and their relationship with environmental variables. Tropical Plant Pathology. 42:1-12.
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2017.
Plant cell and biotechnology studies in Linum usitatissimum - a review. Plant Cell, Tissue and Organ Culture. 82:93-103. Abstract
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2005.
Pinus sylvestris sapling growth and recovery from mammalian browsing. Forest Ecology and Management. 325:18-25.
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2014.
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2018.
Physiological mechanism of low purine derivative excretion in urine of buffaloes compared with Bos taurus cattle. Animal Production Science. 49(11):994-997.
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2009.
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2014.
The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection. Proceedings of the National Academy of Sciences, USA. 105:20038-20043. Abstract
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2008.
Payments for Water Ecosystem Services in Latin America: a literature review and conceptual model. Ecosystem Services. 6:122-132.
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2013.
Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
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2009.
Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist. Published online..
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In Press.
Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist. 221:1634-1648.
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2019.
Participatory wildlife surveys in communal lands: a case study from Simanjiro, Tanzania. African Journal of Ecology. 8(3):727-735.
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2010.
Participatory scenario-planning in place-based social-ecological research: insights and experiences from 23 case studies. Ecology and Society. 20:ArticleNo.34.
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2015.
Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. Journal of Biogeography. 39:2225-2239.
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2012.
Parallel mircrobial ecology of pasteuira and nematode species in Scottish soils. Frontiers in Plant Science. 10:ArticleNo.1763.
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2020.
Overview of holistic application of biogas for small scale farmers in Sub-Saharan Africa. Biomass and Bioenergy. 70:4-16.
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2014.
Overriding importance of water table in the greenhouse gas balance of managed peatlands. Nature. Published online.
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2021.
Organic matter chemistry controls greenhouse gas emissions from permafrost peatlands. Soil Biology and Biochemistry. 98:42-53.
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2016.
Optimal harvesting decision paths when timber and water have an economic value in uneven forests. Forests. 11:ArticleNo.903.
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2020.
Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
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2017.
Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
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2018.
Oceans of opportunity or stormy seas? What does the future hold for developments in European marine policy Philosophical Transactions of the Royal Society of London, A.. 370:5682-5700.
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2012.
Occurrence and distribution of potato pests and diseases in the major potato growing areas in Kenya. Potato Research. 56:325-342.
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2013.
The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
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2008.
A novel grass hybrid to reduce flood generation in temperate regions. Nature Scientific Reports, 3, Article no.1683..
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2013.
Novel colon-available triterpenoids identified in raspberry fruits exhibit antigenotoxic activities in vitro. Molecular Nutrition and Food Research. 61:ArticleNo.1600327.
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2017.
A novel application of natural fluorescence to understand the sources and transport pathways of pollutants from livestock farming in small headwater catchments. Science of the Total Environment. 417:169-182.
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2012.