Publications list
Filters: First Letter Of Last Name is P [Clear All Filters]
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2008.
Characterization of cell death inducing Phytophthora capsici CRN effectors suggests diverse activities in the host nucleus. Frontiers in Plant Science. 4
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2013.
Characterization of immune cell infiltration in the placentome of water buffaloes (Bubalus bubalis) infected with Neospora caninum during pregnancy. Journal of Comparative Pathology. 150:463-468.
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2014.
Characterization of immune system cell subsets in fixed tissues from alpine chamois (Rupicapra rupicapra). Journal of Comparative Pathology. 155:207-212.
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2016.
Characterization of Phytophthora infestans populations in Cyprus, the southernmost potato-producing European country. Plant Disease. Published online.
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2021.
Characterization of Phytophthora infestans populations in northwestern Algeria during 2008-2014. Fungal Biology. 121:467-477.
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2017.
Characterization of the interactions between Cucumber mosaic virus and Potato virus Y in mixed infections in tomato. Molecular Plant-Microbe Interactions. 23:1514-1524.
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2010.
Chemical characterisation of bog peat and dried peat of the Australian Alps. Australian Journal of Soil Research. 43:963-971. Abstract
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2005.
Chemical solutions for grey water recycling. Chemosphere. 71:147-155.
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2008.
Chemical speciation studies on DU contaminated soils using flow field flow fractionation linked to inductively coupled plasma mass spectrometry (FIFFF-ICP-MS). Journal of Environmental Monitoring. 14:782-790.
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2012.
Chitin-binding protein of verticillium nonalfalfae disguises fungus from plant chitinases and suppresses chitin-triggered host immunity. Molecular Plant Microbe Interactions. 32:1378-1390.
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2019.
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2005.
Chlorophyll fluorescence and flowering behaviour of annual-fruiting raspberry cultivars under elevated temperature regimes. European Journal of Horticultural Science. 78:193-202.
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2013.
Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics. 110:613-619.
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2005.
A chloroplast retrograde signal regulates nuclear alternative splicing. Science. 344:427-430.
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2014.
A cholesterol-based allostery model of T cell receptor phosphorylation. Immunity. 44:1091-1101.
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2016.
Chromatin dynamics during interphase and cell division similarities and differences between model and crop plants. Journal of Experimental Botany, Published online..
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In Press.
A chromosome conformation capture ordered sequence of the barley genome. Nature. 544:427-433.
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2017.
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2014.
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2015.
Citizen science evidence from the past century shows that Scottish rivers are warming. Science of the Total Environment. 659:53-65.
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2019.
Clade composition of a plant community indicates its phylogenetic diversity. Ecology and Evolution. 10:3747-3757.
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2020.
Classifying multi-model wheat yield impact response surfaces showing sensitivity to temperature and precipitation change. Agricultural Systems. 159:209-224.
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2018.
Classifying multi-model wheat yield impact response surfaces showing sensitivity to temperature and precipitation change. Agricultural Systems. 159:209-224.
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2018.
Clay mineral type effect on bacterial enteropathogen survival in soil. Science of the Total Environment. 468-469:302-305.
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2014.
Climate and density dependence cause changes in adult sex ratio in a large Arctic herbivore. Ecosphere. 8:ArticleNo.e01699.
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2017.
Climate change impact and adaptation for wheat protein. Global Change Biology. 25:155-173.
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2019.
Climate change may account for the decline in British ring ouzels Turdus torquatus. Journal of Animal Ecology. 75(3):826-835.
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2006.
Climate change, drought risk and land capability for agriculture: implications for land-use in Scotland. Regional Environmental Change. 11:503-518.
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2011.
Climate change? No, wise resource use is the issue: social representations of energy, climate change and the future Environmental Policy and Governance. 22:161-176.
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2012.
Climate, pollution and grazing drive long-term change in moorland habitats. Applied Vegetation Science. 20:194-203.
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2017.
Climatic drivers of plant-plant interactions and diversity in alpine communities. Alpine Botany. 121:63-70.
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2011.
Climbing ev'ry mountain: How do landscape features affect gene exchange among Scottish red deer populations? Deer, The Journal of the British Deer Society. 14:38-41.
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2008.
Clonal turnover of MACE-carrying peach-potato aphids (Myzus persicae (Sulzer), Homoptera: Aphididae) colonizing Scotland. Bulletin of Entomological Research. 98:115-124. Abstract
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2008.
Closing the loop on phosphorus loss from intensive agricultural soil: a microbial immobilization solution? Frontiers in Microbiology. 9:ArticleNo.4..
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2018.
A cloud based tool for knowledge exchange on local scale flood risk. Journal of Environmental Management. 161:38-50.
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2015.
Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.. Journal of Experimental Botany. 58:1035-1045. Abstract
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2007.
CO2 fluxes from drained and rewetted peatlands using a new ECOSSE model water table simulation approach. Science of Total Environment. 754:ArticleNo.142433.
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2021.
Cohort variation in individual body mass dissipates with age in large herbivores. Ecological Monographs. 86:517-543.
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2016.
Cohort variation in individual body mass dissipates with age in large herbivores. Ecological Monographs. 86:517-543.
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2016.
Collaborative governance arrangements to deliver spatially coordinated agri-environmental management. Land Use Policy. 69:175-192.
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2017.
Collection and evaluation of genetic diversity and population structure of potato landraces and varieties in China. Frontiers in Plant Science. 10:ArticleNo.139.
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2019.
Colon-available raspberry extract exhibit anti-cancer effects on in vitro models of colon cancer. Proceedings of the Nutrition Society. 66:67A-67A.
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2007.
Colon-available raspberry polyphenols exhibit anti-cancer effects on in vitro models of colon cancer. Journal of Carcinogenesis. 6:1-13. Abstract
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2007.
Colonisation outwith the colon: plants as an alternative environmental reservoir for human pathogenic enterobacteria. FEMS Microbiology ReviewsFEMS Microbiology Reviews. 33:689-703.
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2008.
Combination of herbivore removal and nitrogen deposition increases upland carbon storage. Global Change Biology.. 21:3036-3048.
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2015.
Combined drought and heat activates protective responses in Eucalyptus globulus that are not activated when subjected to drought or heat stress alone. Frontiers in Plant Science. 9:ArticleNo.819.
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2018.
Combined effects of rhizodeposit C and crop residues on SOM priming, residue mineralization and N supply in soil. Soil Biology and Biochemistry. 113:35-44.
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2017.
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2015.
Combining diverse data sources for CEDSS, an agent-based model of domestic energy demand. Structure and Dynamics: eJournal of Anthropological and Related Sciences. 7
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2014.
Comment on "Productivity Is a Poor Predictor of Plant Species Richness". Science. 335:1441.
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2012.
A commentary on occupational infectious diseases due to agricultural practices in Sub-Saharan Africa. Biomass and Bioenergy. 70:99-111.
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2014.
Comments on 'Baseline values and change in the soil, and implications for monitoring' by R.M. Lark, P.H. Bellamy and G.J.D. Kirk. European Journal of Soil Science. 60:481-483.
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2009.
Comments on the Regulatory Gate Hypothesis and implications for C-cycling in soil. Soil Biology and Biochemistry. 41(6):1352-1354.
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2009.
Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.
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2009.
Community energy: entanglements of community, state and private sectors. Geography Compass. 12:ArticleNo.e12378.
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2018.
Community social capital and status: The social dilemma of food waste. Ecological Economics. 183:ArticleNo.106954.
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2021.
Community-driven development for computational biology at Sprints, Hackathons and Codefests. BMC Bioinformatics. Suppl 14
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2014.
Community-led initiatives' everyday politics for sustainability - conflicting rationalities and aspirations for change. Environment and Planning A. 49:1986-2006.
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2017.
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2011.
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2005.
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2017.
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2018.
Comparative genetic mapping reveals synteny and collinearity between the American cranberry and diploid blueberry genomes. Molecular Breeding. 38:ArticleNo.9.
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2018.
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2021.
Comparative genomics reveals what makes an enterobacterial plant pathogen. Annual Review of Phytopathology. 44:305-336. Abstract
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2006.
A comparative nitrogen balance and productivity analysis of legume and non-legume supported cropping systems: the potential role of biological nitrogen fixation. Frontiers in Plant Science. 7:ArticleNo.1700..
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2016.
Comparative virulence of Caribbean, Brazilian and European isolates of Toxoplasma gondii. Parasites and Vectors. 12:ArticleNo.104.
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2019.
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2021.
A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
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2011.
Comparison of empirical methods for building agent-based models in land use science. Journal of Land Use Science. 2(1):31-55.
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2007.
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2014.
Comparison of microbial community assays for the assessment of stream biofilm ecology. Journal of Microbiological Methods. 85:190-198.
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2011.
Comparison of soil carbon stocks in Scottish soils between 1978 and 2009. European Journal of Soil Science. 64:455-465.
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2013.
Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. Molecular Plant Pathology. 13:1120-1134.
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2012.
Competing conservation goals, biodiversity or ecosystem services : element losses and species recruitment in a managed moorland bracken model system. Journal of Environmental Management. 85(4):1034-1047.
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2007.
Complete genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. Standards in Genomic Sciences. 9
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2014.
Complex responses to movement-based disease control: when livestock trading helps. Journal of the Royal Society Interface. 14:ArticleNo.20160531.
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2017.
The complexities of agent-based modeling output analysis. Journal of Artificial Societies and Social Simulation. 18:ArticleNo.4.
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2015.
Composition of mineral elements and bioactive compounds in tartary buckwheat and wheat sprouts as affected by natural mineral-rich water. Journal of Cereal Science. 69:9-16.
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2016.
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2017.
Compositional analysis of Scottish honeys with antimicrobial activity against antibiotic-resistant bacteria reveals novel antimicrobial components. LWT - Food Science and Technology. 79:52-59.
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2017.
Compositional and toxicological analysis of a GM potato line with reduced alpha-solanine content - A 90-day feeding study in the Syrian Golden hamster. Food and Chemical Toxicology. 64:177-185.
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2012.
Compositional data analysis in time-use epidemiology: what, why, how. International Journal of Environmental Research and Public Health. 17:ArticleNo.2220.
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2020.
Compositional methods for estimating elemental concentrations below the limit of detection in practice using R. Journal of Geochemical Exploration. 141:71-77.
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2014.
Computational models that matter during a global pandemic outbreak: A call to action. Journal of Artificial Societies and Social Simulation. 23:ArticleNo.10.
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2020.
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2020.
Conceptualising multi-regime interactions: the role of the agriculture sector in renewable energy transitions. Research Policy. 44:1543-1554.
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2015.
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2006.
Consequences of facilitation: one plant's benefit is another plant's cost. Functional Ecology. 28:500-508.
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2014.
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2007.
Consequences of intraspecific variation for the structure and function of ecological communities Part 2: Linking diversity and function. Ecological Modelling. 207:277-285. Abstract
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2007.
Consequences of intraspecific variation for the structure and function of ecological communities. I: Model development and predicted patterns of diversity. Ecological Modelling. 207(2-4):264-276.
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2007.
Consequences of intraspecific variation for the structure and function of ecological communities. II Linking diversity and function. Ecological Modelling. 207(2-4):277-285.
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2007.
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2020.
Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytologist. 216:549-561.
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2017.
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2005.
Consistent temperature dependence of respiration across ecosystems contrasting in thermal history. Global Change Biology. 18:1300-1311.
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2012.
Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth. Theoretical and Applied Genetics. 127:2159-2171.
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2014.
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data. 4:ArticleNo.170044.
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2017.
Construction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing. Molecular Breeding. 36:ArticleNo.4.
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2016.
Consumptive and non-consumptive values of wild mammals in Britain. Mammal Review. 38(2-3):189-204.
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2008.
Contemporary pedogenic formation of palygorskite in irrigation induced saline sodic shrink-swell soils of Maharashtra, India. Clays and Clay Minerals. 56(5):531-548.
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2008.
The context dependence of beneficiary feedback effects in plant facilitations. New Phytologist. 204:386-396.
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2014.
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2017.
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2014.
Contrasting genetic regulation of plant development in wild barley grown in two European environments revealed by nested association mapping. Journal of Experimental Botany. 69:1517-1531.
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2018.
Contribution of crop model structure, parameters and climate projections to uncertainty in climate change impact assessments. Global Change Biology. 24:1291-1307.
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2018.
Contribution of crop model structure, parameters and climate projections to uncertainty in climate change impact assessments. Global Change Biology. 24:1291-1307.
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2018.
The contribution of household chemicals to environmental discharges via effluents: Combining chemical and behavioural data. Journal of Environmental Management. 150:427-434.
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2015.
Control of bracken (Pteridium aquilinum): meta-analysis of a multi-site study in the UK. Annals of Botany. 101:957-970.
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2008.
Controlling tick borne diseases through domestic animal management: a theoretical approach. Theoretical Ecology. 4:321-339.
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2011.
Coping with drought: stress and adaptive responses in potato and perspectives for improvement. Frontiers in Plant Science. 6:ArticleNo.542.
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2015.
Correlations among the mineralogical and physical properties of hallyosite nanotubes (HNTs). Clay Minerals. 51:325-350.
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2016.
Cost-benefit analysis of soil and water conservation measures: The case of exclosures in northern Ethiopia. Forest Policy and Economics. 15:27-36.
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2012.
Cost-effectiveness analysis and the implementation of the WFD: review of available approaches and the role of model benchmarking. Archiv fur Hydrobiology: Large Rivers Supplement. 17:201-219.
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2006.
Costs of implementing agricultural soil protection policies - insights from two German cases. Journal of Environmental Policy and Planning. 17:656-672.
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2015.
Could bacterial associations determine the success of weevil species? Annals of Applied Biology.
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2020.
Could bacterial associations determine the success of weevil species? Annals of Applied Biology. 178:51-61.
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2021.
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2013.
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2018.
Cox regression survival analysis with compositional covariates: Application to modelling mortality risk from 24-h physical activity patterns. Statistical Methods in Medical Research. :ArticleNo.UNSP0962280219864125.
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2019.
Criteria for a system level evaluation of farm advisory services. Land Use Policy. 61:86-98.
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2017.
A critical comparison of technologies for a plant genome sequencing project. GigaScience. 8:ArticleNo.UNSPgiy163.
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2019.
Critical issues in trace gas biogeochemistry and global change. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1629-1642. Abstract
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2007.
Crop model improvement reduces the uncertainty of the response to temperature of multi-model ensembles. Field Crops Research. 202:5-20.
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2017.
Crop modelling for integrated assessment of risk to food production from climate change. Environmental Modelling and Software. 72:287-303.
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2015.
Crop presence, but not genetic diversity, impacts on the rare arable plant Valerianella rimosa. Plant Ecology and Diversity. 10:495-507.
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2018.
Crops that feed the world 8: potato: are the trends of increased global production sustainable? Food Security. 4:477-508.
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2012.
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2019.
Cu and Ni mobility and bioavailability in sequentially conditioned soils. Water, Air and Soil Pollution. 210(1-4):63-73.
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2010.
Cucumber mosaic virus 2a polymerase and 3a movement proteins independently affect both virus movement and the timing of symptom development in zucchini squash. Journal of General Virology. 86:1213-1222. Abstract
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2005.
Cucumber mosaic virus 2b protein subcellular targets and interactions: Their significance to RNA silencing suppressor activity. Molecular Plant-Microbe Interactions. 23:294-303.
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2010.
The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection. Nucleic Acids Research. 36:1057-1071. Abstract
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2008.
Cucurbit extrafascicular phloem has strong negative impacts on aphids and is not a preferred feeding site. Plant Cell and Environment. 40:2780-2789.
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2017.
Cultivar differences and impact of plant-plant competition on temporal patterns of nitrogen and biomass accumulation. Frontiers in Plant Science. 10:ArticleNo.215.
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2019.
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2021.
Cytokine expression in the placenta of pregnant cattle after inoculation with Neospora caninum. Veterinary Immunology and Immunopathology. 161:77-89.
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2014.
Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
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2009.
The database of the PREDICTS (Projecting Responses of ecological Diversity in Changing Terrestrial Systems). Ecology and Evolution. 7:145-188.
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2017.
The database of the PREDICTS (Projecting Responses of ecological Diversity in Changing Terrestrial Systems). Ecology and Evolution. 7:145-188.
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2017.
Dealing with distances and transformations for fuzzy c-means clustering of compositional data. Journal of Classification. 29:144-169.
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2012.
Decline in atmospheric sulphur deposition and changes in climate are the major drivers of long-term change in grassland plant communities in Scotland. Environmental Pollution. 235:956-964.
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2018.
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2012.
Defence gene expression and phloem quality contribute to mesophyll and phloem resistance to aphids in wild barley. Journal of Experimental Botany. 70:4011-4026.
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2019.
Defining and delivering resilient ecological networks: nature conservation in England. Journal of Applied Ecology. Published online..
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2018.
Defining and delivering resilient ecological networks: nature conservation in England. Journal of Applied Ecology. 55:2537-2543.
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2018.
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2016.
Defining the rhizobium leguminosarum species complex. Genes. 12:ArticleNo.111.
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2021.
Defoliation and fertiliser influences on the soil microbial community associated with two contrasting Lolium perenne cultivars. Soil Biology and Biochemistry. 38(4):674-682.
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2006.
Defoliation patterns and their implications for the management of vegetative tropical pastures to control intake and diet quality by cattle. Grass and Forage Science. 71:424-436.
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2016.
Degradation of metalaxyl M in contrasting soils is influenced more by differences in physicochemical characteristics than in microbial community composition after reinoculation of sterilised soils. Soil Biology and Biochemistry.. 42(7):1123-1131.
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2010.
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2014.
Denial of long-term issues with agriculture on tropical peatlands will have devastating consequences. Global Change Biology. 23:977-982.
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2017.
Denial of long-term issues with agriculture on tropical peatlands will have devastating consequences. Global Change Biology. 23:977-982.
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2017.
Denitrification triggered by nitrogen addition in Sphagnum magellanicum peat. Biogeochemistry. 106:435-441.
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2011.
Depicting how Eucalyptus globulus survives drought: involvement of redox and DNA methylation events. Functional Plant Biology. 43:838-850.
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2016.
Designing future barley ideotypes using a crop model ensemble. European Journal of Agronomy. 82:144-162.
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2017.
Designing future barley ideotypes using a crop model ensemble. European Journal of Agronomy. 82:144-162.
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2017.
Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules. Journal of Microbiological Methods. 68(2):248-253.
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2007.
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2013.
Determinants of barley grain yield in a wide range of Mediterranean environments. Field Crops Research. 120:169-178.
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2011.
Determinants of heart rate in Svalbard reindeer reveal mechanisms of seasonal energy management. Philosophical Transactions of the Royal Society B. 376:ArticleNo20200215.
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2021.
Deterministic processes vary during community assembly for ecologically dissimilar taxa. Nature Communications. 6
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2015.
Detritivores as indicators of landscape stress and soil degradation. Australian Journal of Experimental Agriculture. 47(4):412-423.
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2007.
Developing carbon budgets for UK agriculture, land-use, land-use change and forestry out to 2022. Climatic Change. 105:529-553.
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2011.
Developing greenhouse gas marginal abatement cost curves for agricultural emissions from crops and soils in the UK. Agricultural Systems. 103(4):198-209.
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2010.
Developing monitoring protocols for cost-effective surveillance of lichens. The Lichenologist. 46:471-482.
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2014.
Developing surface water flood forecasting capabilities in Scotland: an operational pilot for the 2014 Commonwealth Games in Glasgow. Journal of Flood Risk Management. 11:S884-S901.
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2018.
Development and evaluation of a barley 50k iSelect SNP array. Frontiers in Plant Science. 8:ArticleNo.1792.
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2017.
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2007.
Development and validation of methodology for estimating potato canopy structure for field crop phenotyping and improved breeding. Frontiers in Plant Science. 12:ArticleNo.612843.
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2021.
Development of a molecular cytogenetic recombination assay for barley. Cytogenetic and Genome Research. 129:154-161.
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2010.
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2018.
Development of EST-derived microsatellite markers for Arabidopsis lyrata subspecies petraea (L.). Molecular Ecology Notes. 7:631-634. Abstract
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2007.
Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology. 179:209-215.
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2011.
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2013.
Developmental metabolomics to decipher and improve fleshy fruit quality. Advances in Botanical Research. 98
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2021.
Dickeya species: an emerging problem for potato production in Europe. Plant Pathology. 60:385-399.
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2011.
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2014.
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2012.
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2005.
Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.
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2010.
Digital catchment observatories: a platform for engagement and knowledge exchange between catchment scientists, policy makers, and local communities. Water Resources Research. 51:4815-4822.
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2015.
Digital mapping of peatlands - A critical review. Earth Science Reviews. 196
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2019.
Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling. Journal of Agricultural and Food Chemistry. 53:5461-5466. Abstract
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2005.
Direct and indirect interactions co-determine species composition in nurse plant systems. Oikos. 122:1371-1379.
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2013.
Disease transmission in an extreme environment: Nematode parasites infect reindeer during the Arctic winter. International Journal for Parasitology. 42:789-795.
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2012.
Disentangling direct and indirect effects of a legume shrub on its understorey community. Oikos. 124:1251-1262.
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2015.
Disparities between plant community responses to nitrogen deposition and critical loads in UK semi-natural habitats. Atmospheric Environment. 239:ArticleNo.117478.
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2020.
Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. BMC Evolutionary Biology. 14
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2014.
Distribution of mountain hares (Lepus timidus) in Scotland: results from a questionnaire. Mammal Review. 40(4):313-326.
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2010.
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2015.
Distribution patterns of metals (Cd, Cu, Cr, Ni, Pb, V and Zn) in British soils. Environmental Pollution. 153(2):273-283.
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2008.
Distributions of carbon and nitrogen isotopes in Scotland's topsoil: a national-scale study. European Journal of Soil Science. 66:1002-1011.
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2015.
Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand. Biodiversity and Conservation, 21, 2287-2298..
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2012.
Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Global Change Biology. 17:2488-2497.
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2011.
Diversity of methodologies to experiment Integrated Pest Management in arable cropping systems: analysis and reflections based on a European network. European Journal of Agronomy. 83:86-99.
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2017.
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2020.
DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna. Epigenetics and Chromatin. 14:ArticleNo.4.
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2021.