Publications list
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A field system for measuring plant and soil carbon fluxes using stable isotope methods. European Journal of Soil Science. Published online..
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2020.
A field trial to evaluate the pollution potential to ground and surface waters from woodchip corrals for overwintering livestock outdoors. Soil Use and Management. 22(1):82-94.
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2006.
Fifty years of Biological Conservation. (Editorial). Biological Conservation. 230:A1-A4.
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2019.
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2013.
First 20 years of DNDC: model evolution. Ecological Modelling. 292:51-62.
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2014.
First evidence of retained sexual capacity and survival in the pyrethroid resistant Sitobion avenae (F.) (Hemiptera: Aphididae) SA3 super-clone following exposure to a pyrethroid at current field-rate. Irish Journal of Agriculture and Food Research. 58:21-26.
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2019.
First report of brown rot and wilt of fennel caused by Phytophthora megasperma in Italy. Plant Disease. 90:-110. Abstract
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2006.
First report of the EU_33_A2 clonal lineage of Phytophthora infestans causing late blight disease of potato in Nigeria. New Disease Reports. 40:ArticleNo.20.
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2019.
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2016.
Fisheries conservation and management: finding consensus in the midst of competing paradigms. Animal Conservation. 15:1-3.
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2012.
Flagella interact with ionic plant lipids to mediate adherence of pathogenic Escherichia coli to fresh produce plants. Environmental Microbiology. 16:2181-2195.
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2014.
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2016.
Flux and turnover of fixed carbon in soil microbial biomass of limed and un-limed plots of an upland grassland ecosystem. Environmental Microbiology. 7:544-552. Abstract
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2005.
Folate deficiency promotes differentiation of vascular smooth muscle cells without affecting the methylation status of regulated genes. Biochemical Journal. 476:2769-2795.
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2019.
Folate in pregnancy and imprinted gene and repeat element methylation in the offspring. American Journal of Clinical Nutrition. 97:94-99.
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2013.
Food and nutrition security under global trade: A relation-driven agent-based global trade model. Royal Society Open Science. 8:ArticleNo.201587.
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2021.
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2011.
Food security: focus on agriculture. Science. 328:172-173.
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2010.
Food waste reduction in supply chains through innovations: a review. Measuring Business Excellence.. 25:475-492.
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2021.
A footprint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota. Scientific Reports. 10:ArticleNo.12916.
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2020.
Foraging mechanics and their outcomes for cattle grazing reproductive tropical swards. Applied Animal Behaviour Science. 113(1-3):15-31.
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2008.
Forecasting the spread of aerially transmitted crop diseases with a binary classifier for inoculum survival. Plant Pathology. Published online..
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2018.
Forecasting the spread of aerially transmitted crop diseases with a binary classifier for inoculum survival. Plant Pathology. 67:920-928.
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2018.
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2013.
Forest diversity effects on insect herbivores: do leaf traits matter? New Phytologist. 221:2250-2260.
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2019.
Forging future organizational leaders for sustainability science. Nature Sustainability. 2:647-649.
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2019.
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2019.
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2012.
Forty years of change in Scottish grassland vegetation: increased richness, decreased diversity and increased dominance. Biological Conservation. 212:327-336.
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2017.
Foundation species influence trait-based community assembly. New Phytologist. 196:824-834.
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2012.
Framework for estimating indirect costs in animal health using time series analysis. Frontiers in Veterinary Science. 6:ArticleNo.190.
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2019.
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2009.
From bits to bites: advancement of the Germinate platform to support prebreeding informatics for crop wild relatives. Crop Science. Published online.
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2021.
From farm to kitchen: how gender affects production diversity and the dietary intake of farm households in Ethiopia. Journal of Agricultural Economics. 72:262-292.
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2021.
From oil wealth to green growth: An empirical agent-based model of recession, migration and sustainable urban transition. Environmental Modelling and Software. 107:119-140.
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2018.
From oil wealth to green growth: An empirical agent-based model of recession, migration and sustainable urban transition. Environmental Modelling and Software. 107:119-140.
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2018.
From social interactions to private environmental behaviours: The case of consumer food waste. Resources, Conservation and Recycling.. 176:ArticleNo.105952.
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2021.
From social interactions to private environmental behaviours: The case of consumer food waste. Resources, Conservation and Recycling.. 176
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2021.
From social interactions to private environmental behaviours: The case of consumer food waste. Resources, Conservation and Recycling.. 176
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2021.
FTIR spectroscopy can be used as a screening tool for organic matter quality in regenerating cutover peatlands. Soil Biology & Biochemistry. 40:515-527. Abstract
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2008.
FTIR spectroscopy can be used as a screening tool for organic matter quality in regenerating cutover peatlands. Soil Biology and Biochemistry. 40(2):515-527.
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2008.
Fuel poverty in the UK: Is there a difference between rural and urban areas? Energy Policy. 87:216-223.
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2015.
Fugacity modelling to predict the distribution of organic contaminants in the soil: oil matrix of constructed biopiles. Chemosphere. 71(8):1432-1439.
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2008.
Function of glutathione peroxidases in legume root nodules. Journal of Experimental Botany. 66:2979-2990.
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2015.
A functional assessment of the impact of changing grazing management of upland grassland mosaics. Applied Vegetation Science. 23:539-550.
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2020.
A functional assessment of the response of grassland vegetation to reduced grazing and abandonment. Journal of Vegetation Science.. 21(4):683-694.
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2010.
Functional diversity indices reveal the impacts of land use intefsification on plant community assembly. Journal of Ecology. 99:1143-1151.
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2011.
A functional overview of conservation biological control. Crop Protection. 97:145-158.
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2017.
Functional principal component data analysis: A new method for analysing microbial community fingerprints. Journal of Microbiological Methods. 79(1):89-95.
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2009.
Functional similarity analysis highlights ecosystem impacts and restoration needs. Applied Vegetation Science. 21:258-266.
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2018.
Functional trait metrics are sensitive to the completeness of the species' trait data? Methods in Ecology and Evolution. 5:9-15.
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2014.
The functional trait spectrum of European temperate grasslands. Journal of Vegetation Science. 777
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2019.
Fungal biotransformation of zinc silicate and sulfide mineral ores. Environmental Microbiology. 15:2173-2186.
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2013.
Fungal bioweathering of mimetite and a general geomycological model for lead apatite mineral biotransformations. Applied and Environmental Microbiology. 81:4955-4964.
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2015.
Fungal deterioration of barrier concrete used in nuclear waste disposal. Geomicrobiology Journal. 24(7):643-653.
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2007.
Fungal transformation of metallic lead to pyromorphite in liquid medium. Chemosphere. 113:17-21.
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2014.
The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.
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2010.
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2013.
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2018.
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2016.
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2008.
Genebank genomics highlights the diversity of a global barley collection. Nature Genetics.
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2019.
Genebank genomics highlights the diversity of a global barley collection. Nature Genetics.
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2019.
A general model of error-prone PCR. Journal of Theoretical Biology. 234:497-509. Abstract
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2005.
Generating genomic tools for blueberry improvement. International Journal of Fruit Science. 12:276-287.
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2012.
Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Functional & Integrative Genomics. 8:329-340. Abstract
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2008.
Genetic and environmental effects influencing fruit colour and QTL analysis in raspberry. Theoretical and Applied Genetics. 121:611-627.
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2010.
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2014.
Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. Molecular Plant Pathology. 13:160-173.
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2012.
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2009.
Genetic diversity in caribou linked to past and future climate change. Nature Climate Change. 4:132-137.
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2013.
Genetic diversity in European Pisum germplasm collections. Theoretical and Applied Genetics. 125:367-380.
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2012.
Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract
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2007.
The genetic ghost of an invasion past: colonization and extinction revealed by historical hybridisation in Senecio. Molecular Ecology. 21:369-387.
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2012.
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2013.
Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.
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2008.
Genetically modified lignin belowground. Nature Biotechnology. 25:168-169. Abstract
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2007.
Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathogens. 8:e1002940.
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2012.
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2014.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
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2009.
Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
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2011.
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.
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2008.
Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
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2010.
Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193:2076-2077.
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2011.
Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen phytophthora capsici. Molecular Plant-Microbe Interactions. 25:1350-1360.
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2012.
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2014.
Genome-wide analysis of the response of Dickeya dadantii 3937 to plant antimicrobial peptides. Molecular Plant-Microbe Interactions. 25:523-533.
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2012.
Genome-wide association analysis of grain yield-associated traits in a Pan-European barley cultivar collection. Plant Genome. 11:ArticleNo.UNSP170073.
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2018.
Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.). BMC Genomics. 14:424.
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2013.
Genome-wide association of yield traits in a nested association mapping population of barley reveals new gene diversity for future breeding. Authors. Journal of Experimental Botany. 69:3811-3822.
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2018.
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2010.
Genome-wide QTL and bulked transcriptomic analysis reveals new candidate genes for the control of tuber carotenoid content in potato (Solanum tuberosum L.). Theoretical and Applied Genetics. 127:1917-1933.
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2014.
GenomeDiagram: A python package for the visualisation of large-scale genomic data. Bioinformatics. 22:616-617. Abstract
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2006.
Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract
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2005.
Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
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2006.
Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens. Analytical Methods. 8:12-24.
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2016.
Genotyic variation in maize (Zeamays)-microbe-management interactions for enhancing soil functioning in maize-based cropping systems. New Phytologist. Published online..
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2021.
Genotype and fungicide effects on late-season root growth of winter wheat.. Plant and Soil. 284:33-44. Abstract
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2006.
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2020.
Genotyping of Phytophthora infestans in Eastern Africa reveals a dominating invasive European lineage. Phytopathology. 109:670-680.
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2019.
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2020.
Geophagy among East African chimpanzees: consumed soils provide protection from plant secondary compounds and bioavailable iron. Environmental Geochemistry and Health. 41:2911-2927.
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2019.
Geophagy and potential health implications: geohelminths, microbes and heavy metals. Transactions of the Royal Society of Tropical Medicine and Hygiene. 104(12):787-795.
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2010.
A geospatial framework to support integrated biogeochemical modelling in the United Kingdom. Environmental Modelling and Software. 68:219-232.
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2015.
Geostatistics, spatial rate of change analysis and boundary detection in plant ecology and biogeography. Progress in Physical Geography. 30(2):201-231.
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2006.
Gestation length variation in a wild ungulate. Functional Ecology. 25:691-703.
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2011.
Getting the timing right: antler growth phenology and sexual selection in a wild red deer population. Oecologia. 164:357-368.
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2010.
A GIS-based human health risk assessment for urban green space planning -- An example from Grugliasco (Italy). The Science of the Total Environment. 407(23):5961-5970.
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2009.
A GIS-based tool for an integrated assessment of spatial planning trade-offs with aquaculture. Science of the Total Environment. Published online.
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2018.
A GIS-based tool for an integrated assessment of spatial planning trade-offs with aquaculture. Science of the Total Environment. 627:1644-1655.
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2018.
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2014.
Global and local calibrations to predict chemical and physical properties of a national spatial dataset of Scottish soils from their near infrared spectra. Journal of Near Infrared Spectroscopy. 24:305-316.
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2016.
Global change and the world's mountains: research needs and emerging themes for sustainable development. A synthesis from the 2010 Perth II conference. Mountain Research and Development. 32:S47-S54.
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2012.
Global change effects on plant communities are magnified by time and the number of global change factors imposed. Proceedings of the National Academy of Sciences of the United States of America (PNAS). :ArticleNo.201819027.
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2019.
Global change effects on plant communities are magnified by time and the number of global change factors imposed. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 116:17867-17873.
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2019.
Global change, parasite transmission and disease control: lessons from ecology. Philosophical Transactions of the Royal Society B, Biological Sciences. 372:ArticleNo.20160088.
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2017.
A global collection of permanent vegetation plots. Journal of Vegetation Science. Journal of Vegetation Science. 33
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2022.
Global environmental change: local perceptions, understandings, and explanations. Ecology and Society. 21:ArticleNo.25.
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2016.
The global nitrogen cycle in the twenty-first century: introduction. Philosophical Transactions of the Royal Society, B. 368:ArticleNo.20130165..
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2013.
Global patterns of potential future plant diversity hidden in soil seed banks. Nature Communications. 12:ArticleNo.023(2021).
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2021.
Global Research Alliance Modelling Platform (GRAMP): An open web platform for modelling greenhouse gas emissions from agro-ecosystems. Computers and Electronics in Agriculture. 111:112-120.
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2015.
Global wheat production with 1.5 and 2.0 degrees C above pre-industrial warming. Global Change Biology. 25:1428-1444.
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2019.
Governance change and institutional adaptation: a case study from Harenna Forest, Ethiopia. Environmental Management. 51:912-985.
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2013.
Gradients in fracture force and grazing resistance across canopy layers in seven tropical grass species. Grass and Forage Science. 68:278-287.
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2013.
Grain yield stability of cereal-legume intercrops is greater than sole crops in more productive conditions. Agriculture. 11:ArticleNo.255.
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2021.
Grain yield stability of individual cereal-legume mixtures grown across Europe. Aspects of Applied Biology. 146:241-248.
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2021.
Grain zinc concentrations differ among Brazilian wheat genotypes and respond to zinc and nitrogen supply. PLoS ONE. 13:ArticleNo.e0199464.
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2018.
GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia. 48:331-347.
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2018.
Grazing impacts on Auchenorrhyncha diversity and abundance on a Scottish upland estate. Insect Conservation and Diversity. 5:67-74.
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2012.
Ground beetle (Coleoptera: Carabidae) population declines and phenological changes: is there a connection? Ecological Indicators. 41:15-24.
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2014.
Growth on nitrate and occurrence of nitrate reductase-encoding genes in a phylogenetically diverse range of ectomycorrhizal fungi. New Phytologist. 180(4):875-889.
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2008.
Growth rate hypothesis and efficiency of protein synthesis under different sulphate concentrations in two green algae. Plant Cell and Environment. 38:2313-2317.
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2015.
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2014.
Gypsum and hydrohalite dynamics in sea ice brines. Geochimica et Cosmochimica Acta.
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2017.
Habitat impact assessment detects spatially driven patterns of grazing impacts in habitat mosaics but overestimates damage. Journal for Nature Conservation.
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2018.
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2015.
Habitat preferences and interannual variability in occurrence of the harbour porpoise Phocoena phocoena off north-west Scotland (UK). Marine Ecology Progress Series. 381:297-310.
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2009.
A hAT superfamily tranposase recruited by the cereal grass genome. Molecular Genetics and Genomics. 275:553-563. Abstract
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2006.
"Health in" and "Health of" social-ecological systems: a practical framework for the management of healthy and resilient agricultural and natural ecosystems. Frontiers in Public Health. 8:ArticleNo.616328.
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2021.
Heather moorland vegetation and air pollution: a comparison and synthesis of three national gradient studies. Payne, R.J.; Caporn, S.J.M.; Field, C.D.; Carroll, J.A.; Edmondson, J.L.; Britton, A.J.; Dise, N.B. Water, Air and Soil Pollution.. 225:ArticleNo.1198.
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2014.
Heritability of ocular component dimensions in chickens: genetic variants controlling susceptibility to experimentally-induced myopia and pre-treatment eye size are distinct. Investigative Opthalmology & Visual Science. 52:4012-4020.
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2011.
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2012.
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2014.
High-nature-value grasslands have the capacity to cope with nutrient impoverishment induced by mowing and livestock grazing. Journal of Applied Ecology. 52:1073-1081.
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2015.
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2011.
High-throughput metabolic screening of microalgae genetic variation in response to nutrient limitation. Metabolomics. 12:ArticleNo.9.
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2016.
Highlights of the mini-symposium on extracellular vesicles in inter-organismal communication, held in Munich, Germany, August 2018. Journal of Extracellular Vesicles. 8:ArticleNo.1590116.
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2019.
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2019.
Highly efficient nickel (II) removal by sewage sludge biochar supported a-Fe2O3 and a-FeOOH: Sorption characteristics and mechanisms. PLoS ONE. 14:ArticleNo.e0218114..
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2019.
Home-grown food and the benefits of sharing: The "intergenerational pact" in postsocialist Moldova. Journal of Agrarian Change. 20:460-484.
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2020.
Homozygosity for a single base-pair mutation in the oocytespecific GDF9 gene results in sterility in Thoka sheep. Reproduction. 138:921-933.
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2009.
Host gene expression changes in cattle infected with Alcelaphine herpesvirus 1. Virus Research. 169:246-254.
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2012.
Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner. Proceedings of the National Academy of Sciences. 109:2096-2101.
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2012.
Hotspots and hot moments of amino acid N in soil: real-time insights using continuous microdialysis sampling. Soil Biology and Biochemistry, 131, 40-43.. 131:40-43.
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2019.
How do small farms contribute to food and nutrition security? Linking small farms, strategies, outcomes in territorial food systems Global Food Security. 26:ArticleNo.100427.
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2020.
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2016.
How does pattern of feeding and rate of nutrient delivery influence conditioned food preferences? Oecologia. 153(3):617-624.
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2007.
How effective are heuristic solutions for electricity planning in developing countries. Socio-Economic Planning Sciences. 55:14-24.
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2016.
How fen vegetation structure affects the transport of oil sands process-affected waters. Wetlands. 32:557-570.
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2012.
How old is the streamwater? Open questions in catchment transit time conceptualization, modelling and analysis Hydrological Processes. 24(12):1745-1754.
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2010.
How rapid is aphid-induced signal transfer between plants via common mycelial networks? Communicative and Integrative Biology. 6:e25904.
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2013.
How should rural policy be evaluated if it aims to foster community involvement in environmental management? Journal of Rural Studies. 37:120-1`31.
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2015.
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2016.
Human biomonitoring as a tool for exposure assessment in industrially contaminated sites (ICS). Lessons learnt within the ICS and Health European Network. Epidemiologia e Prevenzione. 43:249-259.
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2019.
Hybrid plants preserve unique genetic variation in the St Helena endemic trees Commidendrum rotundifolium DC Roxb. and C. spurium (G.Forst.) DC. Conservation Genetics. 18:241-246.
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2017.
Hydrogarnet: a host phase for Cr(VI) in chromite ore processing residue (COPR) and other high pH wastes. Environmental Science and Technology. 41(6):1921-1927.
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2007.
Hydropedology: synergistic integration of pedology and hydrology. Water Resources Research. 42(5):W05301.
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2006.
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2009.
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2009.
Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics. 13:1-14.
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2012.
Identification of a new quorum-sensing-controlled virulence factor in Erwinia carotovora subsp. atroseptica secreted via the type II targeting pathway. Molecular Plant-Microbe Interactions. 18:334-342. Abstract
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2005.
Identification of Globodera rostochiensis and G. pallida in the Ukraine by PCR. European Journal of Plant Pathology. 111:39-46. Abstract
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2005.
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2005.
The identification of priority opportunities for UK nature conservation policy. Journal of Applied Ecology. 47(5):955-965.
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2010.
Identification of strategic drivers for extensive hill sheep farms post CAP reform. Proceedings of the Integrated Agricultural Systems: Methodologies, Modelling and Measurements Conference, Edinburgh, UK. 2-4 June 2009. Aspects of Applied Biology, 93, 187-192.. 93:187-192.
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2009.
Identification of TIMING OF CAB EXPRESSION 1 as a temperature-sensitive negative regulator of tuberization in potato. Journal of Experimental Botany. 70:5703-5714.
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2019.
Identifying environmental drivers of insect phenology across space and time: Culicoides in Scotland as a case study. Bulletin of Entomological Research. 103:155-170.
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2013.
Identifying suitable restoration sites for a scarce sub-arctic willow (Salix arbuscula): a test of methods and information sources. Plant Ecology and Diversity. 1(1):105-114.
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2008.
Identifying the ecological and societal consequences of a decline in Buxus forests in Europe and the Caucasus. Biological Invasions. Published online..
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2018.
Identifying the multi-scale spatial structure of plant community determinants of an important national resource. Journal of Vegetation Science. 25:184-197.
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2014.
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2014.
Immuno-epidemiology of chronic bacteria-helminth co-infections: observations from the field and evidence from the laboratory. International Journal of Parasitology. 42:647-655.
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2012.
Immunogenicity of proteome-determined Mycobacterium avium subsp paratuberculosis-specific proteins in sheep with Paratuberculosis. Clinical and Vaccine Immunology. 15:1824-1833.
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2008.
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2008.
Impact of abundance weighting on the response of seed traits to climate and land use. Journal of Ecology. 96(2):355-366.
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2008.
The impact of climate change on barley yield in the Mediterranean basin. European Journal of Agronomy. 106:1-11.
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In Press.
Impact of conventional and integrated management systems on the water-soluble vitamin content in potatoes, field beans and cereals. Journal of Agricultural and Food Chemistry. 66:831-841.
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2018.
The impact of defoliation on nitrogen translocation patterns in Buddleia davidii FRANCH. Functional Plant Biology. 35(6):462-469.
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2008.
The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.
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2010.
Impact of endocrine-disrupting compounds (EDCs) on female reproductive health. Molecular and Cellular Endocrinology. 355:231-239.
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2012.
Impact of future climatic conditions on the potential for plant-mediated soil organic matter priming. Soil Biology and Biochemistry. 65:133-140.
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2013.
Impact of heavy metal amended sewage sludge on forest soils as assessed by bacterial and fungal biosensors. Biology and Fertility of Soils. 42(6):569-576.
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2006.
The impact of home storage conditions on the accumulation of acrylamide precursors in potato tubers. Annals of Applied Biology. 178:304-314.
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2021.
Impact of irradiance on the C allocation in the coastal marine diatom Skeletonema marionoi Sarno and Zingone. Plant, Cell and Environment. 34:1666-1677.
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2011.
The impact of past introductions on an iconic and economically important species, the red deer of Scotland. Journal of Heredity. 104:14-22.
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2013.
Impact of plant species and atmospheric CO2 concentration on rhizodeposition and soil microbial activity and community composition. Journal of Plant Nutrition and Soil Science. 183:327-337.
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2020.
The impact of raptors on the abundance of upland passerines and waders. Oikos. 117(8):1143-1152.
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2008.
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2012.
Impact of water table depth on forest soil methane turnover in laboratory soil cores deduced from natural abundance and tracer 13C stable isotope experiments. Isotopes in Environmental and Health Studies. 42(4):379-390.
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2006.
Impacts of atmospheric nitrogen deposition: responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments. Global Change Biology. 18:1197-1215.
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2012.