Publications list
Filters: First Letter Of Last Name is P [Clear All Filters]
Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens. Analytical Methods. 8:12-24.
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2016.
Global and local calibrations to predict chemical and physical properties of a national spatial dataset of Scottish soils from their near infrared spectra. Journal of Near Infrared Spectroscopy. 24:305-316.
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2016.
Global environmental change: local perceptions, understandings, and explanations. Ecology and Society. 21:ArticleNo.25.
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2016.
High-throughput metabolic screening of microalgae genetic variation in response to nutrient limitation. Metabolomics. 12:ArticleNo.9.
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2016.
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2016.
How effective are heuristic solutions for electricity planning in developing countries. Socio-Economic Planning Sciences. 55:14-24.
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2016.
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2016.
Integrated proteomics and metabolomics to unlock global and clonal responses of Eucalyptus globulus recovery from water deficit. Metabolomics. 12:ArticleNo.141.
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2016.
Inter-cultivar variation in soil-to-plant transfer of radiocaesium and radiostrontium in Brassica oleracea. Journal of Environmental Radioactivity. 155:112-121.
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2016.
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2016.
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2016.
Investigation of salicylate hepatic responses in comparison with chemical analogues of the drug. Biochimica et Biophysica Acta - Molecular Basis of Disease. 1862:1412-1422.
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2016.
Long-term changes in ground beetle (Coleoptera: Carabidae) assemblages in Scotland. Ecological Entomology. 41:157-167.
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2016.
Long-term impacts of nitrogen deposition on coastal plant communities. Environmental Pollution. 221:337-347.
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2016.
Mapping earthworm communities in Europe. Applied Soil Ecology. 97:98-111.
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2016.
Markov switching autoregressive models for interpreting vertical movement data with application to an endangered marine apex predator. Methods in Ecology and Evolution. 7:407-417.
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2016.
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2016.
Mechanistic interpretation of the varying selectivity of Cesium-137 and potassium uptake by radish (Raphanus sativus L.) under field conditions near Chernobyl. Journal of Environmental Radioactivity. 152:85-91.
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2016.
Metabarcoding analysis of phytophthora diversity using genus-specific primers and 454 pyrosequencing. Phytopathology. 106:305-313.
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2016.
Microbial utilization of rice straw and its derived biochar in a paddy soil. Science of the Total Environment.
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2016.
The mitochondrial genome of Globodera ellingtonae is composed of two circles with segregated gene content and differential copy numbers. BMC Genomics. 17:ArticleNo.706..
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2016.
Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
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2016.
Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
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2016.
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2016.
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2016.
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2016.
Novel Cupriavidus strains isolated from root nodules of native Uruguayan Mimosa species. Applied and Environmental Microbiology. 82:3150-3164.
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2016.
Phylogenetic diversity of ceftriaxone resistance and the presence of extended-spectrum beta-lactamase genes in the culturable soil resistome. Journal of Global Antimicrobial Resistance.
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2016.
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2016.
The politico-economics of electricity planning in developing countries: a case study of Ghana. Energy Policy. 88:299-309.
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2016.
The politico-economics of electricity planning in developing countries: a case study of Ghana. Energy Policy. 88:299-309.
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2016.
Preface to the thematic issue on modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:317.
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2016.
Protection of ewes against Teladorsagia circumcincta infection in the periparturient period by vaccination with recombinant antigens. Veterinary Parasitology. 228:130-136.
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2016.
Quantifying fish and mobile invertebrate production from a threatened nursery habitat. Journal of Applied Ecology. 53:596-606.
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2016.
Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
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2016.
A rapid marker ordering approach for high-density genetic linkage maps in experimental autotetraploid populations using multidimensional scaling. Theoretical and Applied Genetics. 129:2117-2132.
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2016.
Regime shifts in coupled socio-environmental systems: review of modelling challenges and approaches. Environmental Modelling and Software. 75:333-347.
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2016.
The rise and rise of halloysite. Clay Minerals. 51:303-308.
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2016.
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2016.
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2016.
Septic tank discharges as multi-pollutant hotspots in catchments. Science of the Total Environment. 542:854-863.
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2016.
Sexual segregation when foraging in an extremely social killer whale population. Behavioral Ecology and Sociobiology. 70:189-198.
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2016.
SNP-based QTL mapping of 15 complex traits in barley under rain-fed and well-watered conditions by a mixed modeling approach. Frontiers in Plant Science. 7
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2016.
Soil characterisation by bacterial community analysis for forensic applications: a quantitative comparison of environmental technologies. Forensic Science International. 26:21-29.
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2016.
Soil nitrogen availability alters rhizodeposition carbon flux into the soil microbial community. Journal of Soils and Sediments. 16:1472-1480.
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2016.
Sorption and desorption of cadmium and zinc in two tropical soils amended with sugarcane-straw-derived biochar. Journal of Soils and Sediments. 16:226-234.
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2016.
Spatial Bayesian belief networks as a planning decision tool for mapping ecosystem services trade-offs on multifunctional forested landscapes. Environmental Research. 144:15-26.
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2016.
Spatial variation in soil properties and diffuse losses between and within grassland fields with similar short-term management. European Journal of Soil Science. 67:386-396.
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2016.
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2016.
Stitching organelles: organization and function of specialized membrane contact sites in plants. Trends in Cell Biology. 26:705-717.
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2016.
Temporal variability in domestic point source discharges and their associated impact on receiving waters. Science of the Total Environment. 571:1275-1283.
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2016.
Terrestrial nitrogen cycling in earth system models revisited. New Phytologist. 210:1165-1168.
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2016.
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2016.
The unfolded protein response and programmed cell death are induced by expression of garlic virus X p11 in Nicotiana benthamiana. Journal of General Virology. 97:1462-1468.
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2016.
Unpacking the people - biodiversity paradox: a conceptual framework. Bioscience. 66:576-583.
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2016.
Unpredictable assembly of arbuscular mycorrhizal fungal communities. Pedobiologia. 59:11-15.
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2016.
Using mental models to understand soil management. Soil Use and Management.
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2016.
Using mental models to understand soil management. Soil Use and Management. 32:36-44.
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2016.
An agent-based model for simulating environmental behavior in an educational organization. Neural Processing Letters. 42:89-118.
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2015.
Agri-environmental collaboratives as bridging organisations in landscape management. Journal of Environmental Management. 161:375-384.
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2015.
Agri-environmental collaboratives for landscape management in Europe. Current Opinion in Environmental Sustainability. 12:59-66.
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2015.
The AKIS concept and its relevance in selected EU member states. Outlook on Agriculture.
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2015.
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2015.
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2015.
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2015.
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2015.
Automated estimation of leaf area development in sweet pepper plants from image analysis. Functional Plant Biology. 42:486-492.
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2015.
Barley: a translational model for adaptation to climate change. New Phytologist. 206:913-931.
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2015.
Bayesian-multiplicative treatment of count zeros in compositional data sets. Central European Journal of Biology. 15:134-158.
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2015.
Biochar application to a contaminated soil reduces the availability and plant uptake of zinc, lead and cadmium. Journal of Environmental Management. 159:86-93.
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2015.
Biodiversity offsetting: what are the challenges, opportunities and research priorities for animal conservation? Animal Conservation. 18:1-3.
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2015.
C-13 PLFAs: a key to open the soil microbial black box? Plant and Soil. 392:3-15.
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2015.
Cadmium, lead, and zinc mobility and plant uptake in a mine soil amended with sugarcane straw biochar. Environmental Science and Pollution Research. 22:17606-17614.
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2015.
The cascading impacts of livestock grazing in upland ecosystems: a 10 year experiment. Ecosphere. 6:ArticleNo.42..
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2015.
Catalysing transdisciplinary synthesis in ecosystem science and management. Science of the Total Environment. 534:1-3.
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2015.
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2015.
A cloud based tool for knowledge exchange on local scale flood risk. Journal of Environmental Management. 161:38-50.
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2015.
Combination of herbivore removal and nitrogen deposition increases upland carbon storage. Global Change Biology.. 21:3036-3048.
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2015.
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2015.
The complexities of agent-based modeling output analysis. Journal of Artificial Societies and Social Simulation. 18:ArticleNo.4.
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2015.
Conceptualising multi-regime interactions: the role of the agriculture sector in renewable energy transitions. Research Policy. 44:1543-1554.
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2015.
The contribution of household chemicals to environmental discharges via effluents: Combining chemical and behavioural data. Journal of Environmental Management. 150:427-434.
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2015.
Coping with drought: stress and adaptive responses in potato and perspectives for improvement. Frontiers in Plant Science. 6:ArticleNo.542.
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2015.
Costs of implementing agricultural soil protection policies - insights from two German cases. Journal of Environmental Policy and Planning. 17:656-672.
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2015.
Crop modelling for integrated assessment of risk to food production from climate change. Environmental Modelling and Software. 72:287-303.
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2015.
Deterministic processes vary during community assembly for ecologically dissimilar taxa. Nature Communications. 6
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2015.
Digital catchment observatories: a platform for engagement and knowledge exchange between catchment scientists, policy makers, and local communities. Water Resources Research. 51:4815-4822.
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2015.
Disentangling direct and indirect effects of a legume shrub on its understorey community. Oikos. 124:1251-1262.
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2015.
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2015.
Distributions of carbon and nitrogen isotopes in Scotland's topsoil: a national-scale study. European Journal of Soil Science. 66:1002-1011.
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2015.
Downscaling and correction of regional climate models outputs with a hybrid geostatistical approach. Spatial statistics. 14:4-21.
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2015.
Drinking water purity - a UK perspective. Environmental Science: Water Research and Technology. 1:268-271.
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2015.
The dynamics of co-management and social capital in protected area management - The Cardoso Island State Park in Brazil. World Development. 67:475-489.
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2015.
The dynamics of energy poverty: evidence from Spain. Economics of Energy and Environmental Policy. 4:153-166.
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2015.
The effect of temperature on the male and female recombination landscape of barley. New Phytologist. 208:421-429.
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2015.
The effects of drought stress on leaf gene expression during flowering in blackcurrant (Ribes nigrum L.). European Journal of Horticultural Science. 80:39-46.
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2015.
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2015.
Epidemiology of Dickeya dianthicola and Dickeya solani in ornamental hosts and potato studied using variable number tandem repeat analysis. European Journal of Plant Pathology. 141:63-70.
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2015.
Equine grass sickness in Scotland: a case control study of environmental geochemical risk factors. Equine Veterinary Journal. Published online..
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2015.
Evolution of the seed dispersal system in barley. Cell. 162:527-539.
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2015.
Extracting OWL ontologies from agent-based models: a netlogo extension. Journal of Artificial Societies and Social Simulation. 18:15.
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2015.
Factors affecting the development and control of black dot on potato tubers. Plant Pathology. 64:167-177.
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2015.
Fuel poverty in the UK: Is there a difference between rural and urban areas? Energy Policy. 87:216-223.
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2015.
Function of glutathione peroxidases in legume root nodules. Journal of Experimental Botany. 66:2979-2990.
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2015.
Fungal bioweathering of mimetite and a general geomycological model for lead apatite mineral biotransformations. Applied and Environmental Microbiology. 81:4955-4964.
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2015.
A geospatial framework to support integrated biogeochemical modelling in the United Kingdom. Environmental Modelling and Software. 68:219-232.
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2015.
Global Research Alliance Modelling Platform (GRAMP): An open web platform for modelling greenhouse gas emissions from agro-ecosystems. Computers and Electronics in Agriculture. 111:112-120.
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2015.
Growth rate hypothesis and efficiency of protein synthesis under different sulphate concentrations in two green algae. Plant Cell and Environment. 38:2313-2317.
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2015.
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2015.
High-nature-value grasslands have the capacity to cope with nutrient impoverishment induced by mowing and livestock grazing. Journal of Applied Ecology. 52:1073-1081.
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2015.
How should rural policy be evaluated if it aims to foster community involvement in environmental management? Journal of Rural Studies. 37:120-1`31.
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2015.
Improving intercropping: a synthesis of research in agronomy, plant physiology and ecology. New Phytologist. 206:107-117.
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2015.
Improving value transfer through socio-economic adjustments in a multicountry choice experiment of water conservation alternatives. Australian Journal of Agricultural and Resource Economics. 59:458-478.
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2015.
Inferring attribute non-attendance from discrete experiments: implications for benefit transfer. Environmental and Resource Economics. 60:497-520.
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2015.
The influence of habitat on body size and tooth wear in Scottish red deer (Cervus elaphus). Canadian Journal of Zoology. 93:61-70.
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2015.
The influence of habitat on body size and tooth wear in Scottish red deer (Cervus elaphus). (Corrigendum: vol 93, pg 61, 2015). Canadian Journal of Zoology. 93:249.
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2015.
Intraspecific genetic diversity and composition modify species-level diversity-productivity relationships. New Phytologist. 205:720-730.
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2015.
Invertebrate species at risk from ash dieback in the UK. Journal of Insect Conservation. 19:75-85.
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2015.
Landscape-scale vegetation patterns influence small-scale grazing impacts. Biological Conservation. 192:218-225.
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2015.
Mapping earthworm communities in Europe. Applied Soil Ecology. 97:98-111.
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2015.
Metabolic responses of eukaryotic microalgae to environmental stress limit the ability of FT-IR spectroscopy for species identification. Algal Research- Biomass Biofuels and Bioproducts. 11:148-155.
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2015.
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2015.
Molecular analysis of Phytophthora diversity in nursery-grown ornamental and fruit plants. Plant Pathology. 64:1308-1319.
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2015.
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2015.
Network analyses reveal novel aspects of ALS pathogenesis. PLoS Genetics. 11:e1005107.
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2015.
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2015.
Participatory scenario-planning in place-based social-ecological research: insights and experiences from 23 case studies. Ecology and Society. 20:ArticleNo.34.
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2015.
Predicting a change in the order of spring phenology in temperate forests. Global Change Biology. 21:2603-2611.
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2015.
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2015.
Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
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2015.
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2015.
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2015.
Rising temperatures reduce global wheat production. Nature Climate Change. 5:143-147.
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2015.
The role of cultural ecosystem services in landscape management and planning. Current Opinion in Environmental Sustainability. 14:28-33.
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2015.
Seed dispersal by ungulates as an ecological filter: a trait-based meta-analysis. Oikos. 124:1109-1120.
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2015.
Sequence-based mapping approach to spatio-temporal snow patterns from MODIS time-series applied to Scotland. International Journal of Applied Earth Observation and Geoinformation. 34:122-135.
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2015.
Shifts in the metabolic function of benthic estuarine microbial community following a single pulse exposure to silver nanoparticles. Environmental Pollution. 201:91-99.
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2015.
Small towns and agriculture: understanding the spatial pattern of farm linkages. European Planning Studies. 23:494-508.
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2015.
Social capital accumulation and the role of the researcher: An example of a transdisciplinary visioning process for the future of agriculture in Europe. Environmental Science and Policy. 50:88-99.
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2015.
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2015.
Spatially segregated foraging patterns of moose (Alces alces) and mountain hare (Lepus timidus) in a subarctic landscape: different tables in the same restaurant? Canadian Journal of Zoology. 93:391-396.
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2015.
The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112:9382-9387.
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2015.
State-space modelling of the drivers of movement behaviour in sympatric species. PLoS ONE. 10:e0142707.
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2015.
Striking a balance between in-person care and the deployment of eHealth to support the older rural population with chronic pain. International Journal of Qualitative Studies on Health and Well-Being. 10
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2015.
Sustainable management of the Southern root-knot nematode, Meloidogyne incognita (Kofoid and White) Chitwood, by means of amendments of Fumaria parviflora. International Journal of Agriculture and Biology. 17:289-296.
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2015.
Sustainable use of organic resources for bioenergy, food and water provision in rural Sub-Saharan Africa. Renewable and Sustainable Energy Reviews. 50:903-917.
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2015.
Technology for older adults: maximising personal and social interaction: exploring opportunities for eHealth to support the older rural population with chronic pain. Scottish Geographical Journal. 131:181-193.
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2015.
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2015.
The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.
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2015.
A trait-based approach to crop-weed interactions. European Journal of Agronomy. 70:22-32.
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2015.
A transdisciplinary approach to the economic analysis of the European Water Framework Directive. Ecological Economics. 116:34-45.
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2015.
Uranium phosphate biomineralization by fungi. Environmental Microbiology. 17:2064-2075.
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2015.
Using model-based proposals for fast parameter inference on discrete state space, continuous-time Markov processes. Journal of the Royal Society Interface. 12:ArticleNo.20150225.
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2015.
The water energy food nexus - challenges and emerging solutions. Environmental Science: Water Research and Technology. 1:15-16.
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2015.
Wear fast, die young: more worn teeth and shorter lives in Iberian compared to Scottish red deer. PLoS ONE. 10:e0134788.
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2015.
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2015.
Why genomics research on Pectobacterium and Dickeya makes a difference. American Journal of Potato Research. 92:218-222.
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2015.
Y Species composition of coastal dune vegetation in Scotland has proved resistant to climate change over a third of a century. Global Change Biology. 21:3738-3747.
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2015.
zCompositions - R Package for multivariate imputation of left-censored data under a compositional approach. Chemometrics and Intelligent Laboratory Systems. 143:85-96.
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2015.
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2014.
Allelic variation at Fr-H1/Vrn-H1 and Fr-H2 loci is the main determinant of frost tolerance in spring barley. Environmental and Experimental Botany. 106:148-155.
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2014.
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2014.
Arbuscular mycorrhizal fungi and aphids interact by changing host plant quality and volatile emission. Functional Ecology. 28:375-385.
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2014.
Ash dieback in the UK: a review of the ecological and conservation implications and potential management options. Biological Conservation. 175:95-109.
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2014.
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2014.
Assessing recovery from acidification of European surface waters in the year 2010: evaluation of projections made with the MAGIC model in 1995. Environmental Science and Technology. 48:13280-13288.
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2014.
Assessing the influence of compost and biochar amendments on the mobility and toxicity of metals and arsenic in a naturally contaminated mine soil. Environmental Pollution. 186:195-202.
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2014.
Automatic fruit recognition and counting from multiple images. Biosystems Engineering. 118:203-215.
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2014.
Bayesian-multiplicative treatment of count zeros in compositional data sets. Central European Journal of Biology. 15:134-158.
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2014.
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2014.
Between migration load and evolutionary rescue: dispersal, adaptation and the response of spatially structured populations to environmental change. Proceedings of the Royal Society Series B. 281:1471-2954.
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2014.
A bootstrap estimation scheme for chemical compositional data with nondetects. Journal of Chemometrics. 28:585-599.
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2014.
Can biogas digesters help to reduce deforestation in Africa? Biomass and Bioenergy. 70:87-98.
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2014.
Can faecal markers detect a short term reduction in forage intake by cattle? Animal Feed Science and Technology. 194:44-57.
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2014.
Cereal aphid colony turnover and persistence in winter wheat. PLoS ONE. 9:e106822.
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2014.
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2014.
Characterization of immune cell infiltration in the placentome of water buffaloes (Bubalus bubalis) infected with Neospora caninum during pregnancy. Journal of Comparative Pathology. 150:463-468.
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2014.
A chloroplast retrograde signal regulates nuclear alternative splicing. Science. 344:427-430.
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2014.
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2014.
Clay mineral type effect on bacterial enteropathogen survival in soil. Science of the Total Environment. 468-469:302-305.
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2014.
Combining diverse data sources for CEDSS, an agent-based model of domestic energy demand. Structure and Dynamics: eJournal of Anthropological and Related Sciences. 7
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2014.
A commentary on occupational infectious diseases due to agricultural practices in Sub-Saharan Africa. Biomass and Bioenergy. 70:99-111.
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2014.
Community-driven development for computational biology at Sprints, Hackathons and Codefests. BMC Bioinformatics. Suppl 14
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2014.
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2014.
Complete genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. Standards in Genomic Sciences. 9
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2014.
Compositional methods for estimating elemental concentrations below the limit of detection in practice using R. Journal of Geochemical Exploration. 141:71-77.
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2014.
Consequences of facilitation: one plant's benefit is another plant's cost. Functional Ecology. 28:500-508.
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2014.
Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth. Theoretical and Applied Genetics. 127:2159-2171.
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2014.
The context dependence of beneficiary feedback effects in plant facilitations. New Phytologist. 204:386-396.
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2014.
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2014.
Cytokine expression in the placenta of pregnant cattle after inoculation with Neospora caninum. Veterinary Immunology and Immunopathology. 161:77-89.
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2014.
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2014.
Developing monitoring protocols for cost-effective surveillance of lichens. The Lichenologist. 46:471-482.
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2014.
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2014.
Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. BMC Evolutionary Biology. 14
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2014.
Do Marine Protected Areas deliver flows of ecosystem services to support human welfare? Marine Policy. 44:139-148.
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2014.
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2014.
DTREEv2, a computer-based support system for the risk assessment of genetically modified plants. New Biotechnology. 31:166-171.
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2014.
Dynamics and management of the white potato cyst nematode Globodera pallida in commercial potato crops. Annals of Applied Biology. 164:18-34.
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2014.
E-coli O157 on Scottish cattle farms: Evidence of local spread and persistence using repeat cross-sectional data. BMC Veterinary Research. 10
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2014.