Publications list
Filters: First Letter Of Last Name is P [Clear All Filters]
Analyzing lateral root development: how to move forward. The Plant Cell. 24:15-20.
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2012.
Are humus forms, mesofauna and microflora in subalpine forest soils sensitive to thermal conditions? Biology and Fertility of Soils. 48:709-725.
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2012.
Assessing pig body language: agreement and consistency between pig farmers, veterinarians, and animal activists. Journal of Animal Science. 90:3652-3665.
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2012.
Assessing species and community functional responses to environmental gradients: which multivariate methods? Journal of Vegetation Science. 23:805-821.
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2012.
Automatic reconstruction of 3D environment using real terrain data and satellite images. Intelligent Automation and Soft Computing. 18:49-63.
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2012.
Avirulence protein 3a (AVR3a) from the potato pathogen Phytophthora infestans forms homodimers through its predicted translocation region and does not specifically bind phospholipids. Journal of Biological Chemistry. 287:38101-38109.
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2012.
Biological characterisation of Globodera pallida from Idaho. Nematology. 14:817-826.
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2012.
Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica. Microbiology. 158:1758-1766.
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2012.
Cellular responses to the metal-binding properties of metformin. Diabetes. 61:1423-1433.
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2012.
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2012.
Chemical speciation studies on DU contaminated soils using flow field flow fractionation linked to inductively coupled plasma mass spectrometry (FIFFF-ICP-MS). Journal of Environmental Monitoring. 14:782-790.
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2012.
Climate change? No, wise resource use is the issue: social representations of energy, climate change and the future Environmental Policy and Governance. 22:161-176.
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2012.
Comment on "Productivity Is a Poor Predictor of Plant Species Richness". Science. 335:1441.
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2012.
Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. Molecular Plant Pathology. 13:1120-1134.
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2012.
Compositional and toxicological analysis of a GM potato line with reduced alpha-solanine content - A 90-day feeding study in the Syrian Golden hamster. Food and Chemical Toxicology. 64:177-185.
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2012.
Consistent temperature dependence of respiration across ecosystems contrasting in thermal history. Global Change Biology. 18:1300-1311.
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2012.
Cost-benefit analysis of soil and water conservation measures: The case of exclosures in northern Ethiopia. Forest Policy and Economics. 15:27-36.
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2012.
Crops that feed the world 8: potato: are the trends of increased global production sustainable? Food Security. 4:477-508.
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2012.
Dealing with distances and transformations for fuzzy c-means clustering of compositional data. Journal of Classification. 29:144-169.
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2012.
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2012.
Disease transmission in an extreme environment: Nematode parasites infect reindeer during the Arctic winter. International Journal for Parasitology. 42:789-795.
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2012.
Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand. Biodiversity and Conservation, 21, 2287-2298..
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2012.
Edaphic factors influence the longevity of seeds in the soil. Plant Ecology. 213:57-65.
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2012.
Editor's Choice: crop genome plasticity and its relevance to food and feed safety of genetically engineered breeding stacks. Plant Physiology. 160:1842-1853.
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2012.
Effect of phosphoglycerate mutase and fructose 1,6-bisphosphatase deficiency on free-living and symbiotic Burkholderia phymatum. Microbiology-SGM. 158:1127-1136.
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2012.
Effect of roasting conditions and grinding on free radical contents of coffee beans stored in air. Food Chemistry. 131:811-816.
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2012.
Effects of exposure to environmental chemicals during pregnancy on the development of the male and female reproductive axes. Reproduction in Domestic Animals. 47:15-22.
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2012.
Effects of polychlorinated biphenyls in CD-1 mice: reproductive toxicity and intergenerational transmission. Toxicological Sciences. 126:213-226.
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2012.
Effects of species, root branching order and season on the root traits of 13 perennial grass species. Plant and Soil. 353:47-57.
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2012.
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2012.
Equine cestodosis: a sero-epidemiological study of Anoplocephala perfoliata infection in Ethiopia. Veterinary Research Communication. 36:93-98.
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2012.
Estimating carbon price from a closed emission trading scheme in the agricultural sector. Journal of Land Use Science. 6:1-18.
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2012.
Fisheries conservation and management: finding consensus in the midst of competing paradigms. Animal Conservation. 15:1-3.
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2012.
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2012.
Foundation species influence trait-based community assembly. New Phytologist. 196:824-834.
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2012.
Generating genomic tools for blueberry improvement. International Journal of Fruit Science. 12:276-287.
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2012.
Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. Molecular Plant Pathology. 13:160-173.
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2012.
Genetic diversity in European Pisum germplasm collections. Theoretical and Applied Genetics. 125:367-380.
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2012.
The genetic ghost of an invasion past: colonization and extinction revealed by historical hybridisation in Senecio. Molecular Ecology. 21:369-387.
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2012.
Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathogens. 8:e1002940.
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2012.
Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen phytophthora capsici. Molecular Plant-Microbe Interactions. 25:1350-1360.
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2012.
Genome-wide analysis of the response of Dickeya dadantii 3937 to plant antimicrobial peptides. Molecular Plant-Microbe Interactions. 25:523-533.
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2012.
Global change and the world's mountains: research needs and emerging themes for sustainable development. A synthesis from the 2010 Perth II conference. Mountain Research and Development. 32:S47-S54.
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2012.
Grazing impacts on Auchenorrhyncha diversity and abundance on a Scottish upland estate. Insect Conservation and Diversity. 5:67-74.
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2012.
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2012.
Host gene expression changes in cattle infected with Alcelaphine herpesvirus 1. Virus Research. 169:246-254.
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2012.
Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner. Proceedings of the National Academy of Sciences. 109:2096-2101.
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2012.
How fen vegetation structure affects the transport of oil sands process-affected waters. Wetlands. 32:557-570.
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2012.
Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics. 13:1-14.
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2012.
Immuno-epidemiology of chronic bacteria-helminth co-infections: observations from the field and evidence from the laboratory. International Journal of Parasitology. 42:647-655.
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2012.
Impact of endocrine-disrupting compounds (EDCs) on female reproductive health. Molecular and Cellular Endocrinology. 355:231-239.
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2012.
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2012.
Impacts of atmospheric nitrogen deposition: responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments. Global Change Biology. 18:1197-1215.
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2012.
Impacts of climate, host and landscape factors on Culicoides species in Scotland. Medical and Veterinary Entomology. 26:168-177.
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2012.
Impacts of warming on the structure and functioning of aquatic communities: individual- to ecosystem-level responses. Chapter 2. Advances in Ecological Research. 47:81-176.
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2012.
Inactivation of PbTopo III beta causes hyper-excision of the Pathogenicity Island HAI2 resulting in reduced virulence of Pectobacterium atrosepticum. Molecular Microbiology. 84:648-663.
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2012.
Incorporation of 13C-labelled rice rhizodeposition carbon into soil microbial communities under different water status. Soil Biology and Biochemistry. 53:72-77.
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2012.
Influence of pit removal methods on river network position. Hydrological Processes. 26:1984-1990.
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2012.
Interactions between profit and welfare on extensive sheep farms. Animal Welfare. 21:57-64.
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2012.
Landscape genetics of a top neotropical predator. Molecular Ecology. 21:5969-5985.
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2012.
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2012.
Managed honey bee colony losses in Canada, China, Europe, Israel and Turkey, for the winters of 2008-9 and 2009-10. Journal of Agricultural Research. 51:91-114.
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2012.
Microbial response to organic matter enrichment in the oligotrophic Levantine Basin (Eastern Mediterranean). Geomicrobiology Journal. 29:648-655.
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2012.
Mind the gap: the ration of yolk androgens and antioxidants varies between sons and daughters dependent on paternal attractiveness. Behavioral Ecology and Sociobiology. 66:519-527.
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A new approach to simulating stream isotope dynamics using Markov switching autoregressive models. Advances in Water Resources. 46:20-30.
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2012.
Nitrogen deposition enhances moss growth but leads to an overall decline in habitat condition in mountain moss-sedge heath. Global Change Biology. 18:290-300.
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2012.
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2012.
Nodulation of legumes from the Thar desert of India and molecular characterization of their rhizobia. Plant and Soil. 357:227-243.
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2012.
Now you see it, now you don't: The challenge of detecting, monitoring and conserving ectomycorrhizal fungi. Fungal Ecology. 5:633-640.
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2012.
Oceans of opportunity or stormy seas? What does the future hold for developments in European marine policy Philosophical Transactions of the Royal Society of London, A.. 370:5682-5700.
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2012.
Opportunities for improving phosphorus-use efficiency in crop plants. New Phytologist. 195:306-320.
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2012.
Overstory and understory vegetation interact to alter soil community composition and activity. Plant and Soil. 352:65-84.
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2012.
Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. Journal of Biogeography. 39:2225-2239.
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2012.
Pathogenic potential to humans of bovine Escherichia coli O26, Scotland. Emerging Infectious Diseases. 18:439-448.
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2012.
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2012.
The Ph1 locus suppresses Cdk2-type activity during premeiosis and meiosis in wheat. The Plant Cell. 24:152-162.
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2012.
A physical, genetic and functional sequence assembly of the barley genome. Nature. 491:711-716.
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2012.
A potential loss of carbon associated with greater plant growth in the European Arctic. Nature Climate Change. 2:875-879.
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2012.
Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross. Crop Science. 52:2469-2480.
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2012.
Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer. Journal of Evolutionary Biology. 25:2457-2469.
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2012.
Relationships between climate, water resources, land use and diffuse pollution and the significance of uncertainty in climate change. Journal of Hydrology. 434:19-35.
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2012.
River macrophyte indices: not the Holy Grail!. Freshwater Biology. 57:1745-1759.
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2012.
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2012.
The role of secretion systems and small molecules in soft-rot enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50:425-449.
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2012.
The scope of the land-based sector to mitigate climate change in North-east Scotland: opportunities and challenges with particular reference to the role of forests. International Journal of Environment and Sustainable Development.. 11:274-292.
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2012.
Should REDD+ fund "sustainable intensification" as a means of reducing tropical deforestation? Carbon Management. 3:117-120.
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2012.
Spatial analysis of ectomycorrhizal fungi reveals that root tip communities are structured by competitive interactions. Molecular Ecology. 21:5110-5123.
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2012.
Spatio-temporal MODIS EVI gap filling under cloud cover: an example in Scotland. ISPRS Journal of Photogrammetry and Remote Sensing. 72:56-72.
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2012.
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2012.
SPICY: towards automated phenotyping of large pepper plants in the greenhouse. Functional Plant Biology. 39:870-877.
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2012.
Stable carbon isotope analysis of fluvial sediment fluxes over two contrasting C4-C3 semi-arid vegetation transitions. Rapid Communications in Mass Spectrometry. 26:2386-2392.
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2012.
Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
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2012.
Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment. New Phytologist. 196:101-109.
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2012.
Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
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2012.
Transcriptional response of Pseudomonas aeruginosa to a phosphate-deficient Lolium perenne rhizosphere. Plant and Soil. 359:25-44.
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2012.
Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
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2012.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments. Rapid Communications in Mass Spectrometry. 26:2413-2421.
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2012.
The weaker sex? The propensity for male-biased piglet mortality PLoS ONE. 7:e30318.
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2012.
What the "food security" agenda means for animal conservation in terrestrial ecosystems. Animal Conservation. 15:115-116.
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2012.
Woodland networks in a changing climate: Threats from land use change. Biological Conservation. 149:93-102.
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2012.
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2011.
2H stable isotope analysis of human tooth enamel: a new tool for forensic human provenancing? Rapid Communications in Mass Spectrometry. 25:910-916.
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2011.
Altered food web structure and C-flux pathways associated with mineralisation of organic amendments to agricultural soil. Applied Soil Ecology. 48:107-116.
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2011.
Analysis of ESTs generated from inner bark tissue of an Acacia auriculiformis x Acacia mangium hybrid. Tree Genetics and Genomes. 7:143-152.
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2011.
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2011.
Assessing the impact of past wapiti introductions into Scottish Highland red deer populations using a Y chromosome marker. Mammalian Biology. 76:640-643.
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2011.
Birds bias offspring sex ratio in response to livestock grazing. Biology Letters. 7:958-960.
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2011.
Browsing affects intra-ring carbon allocation in species with contrasting wood anatomy. Tree Physiology. 31:150-159.
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2011.
The challenge of developing effective soil conservation policies (editorial). Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies. 22:1-4.
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2011.
Changes in the management of Scottish machair communities and associated habitats from the 1970s to the present. Scottish Geographical Journal. 127:267-287.
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2011.
Changes in the phenology of the ground beetle Pterostichus madidus (Fabricius, 1775). Insect Science. 18:462-472.
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2011.
Climate change, drought risk and land capability for agriculture: implications for land-use in Scotland. Regional Environmental Change. 11:503-518.
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2011.
Climatic drivers of plant-plant interactions and diversity in alpine communities. Alpine Botany. 121:63-70.
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2011.
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2011.
A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
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2011.
Comparison of microbial community assays for the assessment of stream biofilm ecology. Journal of Microbiological Methods. 85:190-198.
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2011.
Controlling tick borne diseases through domestic animal management: a theoretical approach. Theoretical Ecology. 4:321-339.
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2011.
Denitrification triggered by nitrogen addition in Sphagnum magellanicum peat. Biogeochemistry. 106:435-441.
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2011.
Determinants of barley grain yield in a wide range of Mediterranean environments. Field Crops Research. 120:169-178.
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2011.
Developing carbon budgets for UK agriculture, land-use, land-use change and forestry out to 2022. Climatic Change. 105:529-553.
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2011.
Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology. 179:209-215.
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2011.
Dickeya species: an emerging problem for potato production in Europe. Plant Pathology. 60:385-399.
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2011.
Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Global Change Biology. 17:2488-2497.
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2011.
Dominant and diet-responsive groups of bacteria within the human colonic microbiota. International Society for Microbial Ecology (ISME) Journal. 5:220-230.
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2011.
Employment effects of private investment initiatives in rural areas of southern Europe: a regional SAM approach. Agricultural Economics Review (Greek Association of Agricultural Economists). 12:50-61.
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2011.
Energy use, climate change and folk psychology: Does sustainability have a chance? Results from a qualitative study in five European countries Global Environmental Change. 21:1025-1034.
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2011.
Enhancing workflow with a semantic description of scientific intent. Journal of Web Semantics. 9:222-244.
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2011.
Environmental control and spatial structures in peatland vegetation. Journal of Vegetation Science. 22:878-890.
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2011.
Estimation of total leaf area in perennial plants using image analysis. Revista Brasileira de Engenharia Agricola e Ambiental. 15:96-101.
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2011.
Excision and episomal replication of Cauliflower mosaic virus integrated into a plant genome. Plant Physiology. 155:1908-1919.
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2011.
Exploring robustness of biodiversity policy with a coupled metacommunity and agent-based model. Journal of Land Use Science. 6:175-193.
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2011.
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Functional diversity indices reveal the impacts of land use intefsification on plant community assembly. Journal of Ecology. 99:1143-1151.
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2011.
Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
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2011.
Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193:2076-2077.
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2011.
Gestation length variation in a wild ungulate. Functional Ecology. 25:691-703.
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2011.
Heritability of ocular component dimensions in chickens: genetic variants controlling susceptibility to experimentally-induced myopia and pre-treatment eye size are distinct. Investigative Opthalmology & Visual Science. 52:4012-4020.
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2011.
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2011.
Impact of irradiance on the C allocation in the coastal marine diatom Skeletonema marionoi Sarno and Zingone. Plant, Cell and Environment. 34:1666-1677.
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2011.
Incentives and enforcement: the institutional design and policy mix for soil conservation in Brandenburg (Germany). Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies. 22:111-123.
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2011.
Influence of temperature on the life-cycle of Globodera spp. Communications in Agricultural and Applied Biological Sciences. 76:307-310.
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2011.
Inter-laboratory calibration of new silver orthophosphate comparison materials for stable oxygen isotope analysis of phosphates. Rapid Communications in Mass Spectrometry. 25:579-584.
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2011.
Interpretation of reflectance spectra of clay mineral-silica mixtures: implications for Martian clay mineralogy at Mawrth Vallis. Clays and Clay Minerals. 59:400-415.
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2011.
Leaf dry matter content as a predictor of grassland litter decomposition: a test of the "Mass Ratio Hypothesis". Plant and Soil. 342:49-57.
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2011.
Links between ammonia oxidizer community structure, abundance and nitrification potential in acidic soils. Applied and Environmental Microbiology. 77:4618-4625.
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2011.
Long-term exclusion of plant-inputs to soil reduces the functional capacity of microbial communities to mineralise recalcitrant plant-derived carbon sources. Soil Biology and Biochemistry. 43:1873-1880.
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2011.
Low genetic variation support bottlenecks in Scandinavian red deer. European Journal of Wildlife Research. 57:1137-1150.
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2011.
Metabolism of 2-hydroxy-4-(methylthio)butanoate (HMTBA) in lactating dairy cows. Journal of Dairy Science. 94:1526-1535.
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2011.
Metabolomics and food processing: from semolina to pasta. Journal of Agricultural and Food Chemistry. 59:9366-9377.
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2011.
Microbial community abundance and structure are determinants of soil organic matter mineralisation in the presence of labile carbon. Soil Biology and Biochemistry. 43:1705-1715.
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2011.
Mixed model association scans of multi-environmental trial data reveal major loci controlling yield and yield related traits in Hordeum vulgare in Mediterranean environments. Theoretical and Applied Genetics. 122:1363-1373.
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2011.
Modelling rotations: can crop sequences explain arable weed seedbank abundance? Weed Research. 51:422-432.
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2011.
Morphological clasification of plant cell deaths. Cell Death and Differentiation. 18:1241-1246.
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Opportunities and challenges for terrestrial carbon offsetting and marketing, with some implications for forestry in the UK. South and East European Journal of Forestry (SEEFOR). 1:69-79.
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2011.
Physical response of rigid and non-rigid soils to analogues of biological exudates. European Journal of Soil Science. 62:676-684.
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2011.
A polygalacturonase-inhibiting protein with a role in pea defence against the cyst nematode Heterodera goettingianna. Molecular Plant Pathology. 12:275-287.
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2011.
Polyphenol and vitamin C content in European commercial blackcurrant juice products. Food Chemistry. 127:1216-1223.
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2011.
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2011.
A probabilistic approach to river network detection in digital elevation models. Catena. 87:341-350.
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2011.
Putting plant defences on the map: a test of the idea that plants are better defended at lower latitudes. New Phytologist. 191:777-788.
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2011.
Putting the eco back in ecotourism. Animal Conservation. 14:325-327.
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2011.
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2011.
The receptor-like kinase SlSERK1 is required for Mi-1-mediated resistance to potato aphids in tomato. Plant Journal. 67:459-471.
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2011.
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2011.
Resistance to powdery mildew in Spanish barley landraces is controlled by different sets of quantitative trait loci. Theoretical and Applied Genetics. 123:1019-1028.
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2011.
Selective breeding for susceptibility to myopia reveals a gene-environment interaction. Investigative Ophthalmology and Visual Science. 52:4003-4011.
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2011.
Shortcomings of political instruments for agricultural soil conservation. Berichte uber Landwirtschaft. 89:331-350.
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2011.
Soil degradation, farming practices, institutions and policy responses: An analytical framework. Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies.. 22:32-46.
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2011.
Soil management in relation to sustainable agriculture and ecosystem services. Food Policy. 36:S72-S87.
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2011.
Soil organic matters. European Journal of Soil Science. 62:1-4.
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2011.
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2011.
Special issue: agent-based modelling of land use effects on ecosystem processes and services. Journal of Land Use Science. 6:75-81.
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2011.
Stability and variability of virulence of Phytophthora infestans assessed in a ring test across European laboratories. Plant Pathology. 60:556-565.
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2011.
Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.
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2011.
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2011.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26:328-336.
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2011.
Tecnicas composicionales para concentraciones geoquimicas por debajo del limite de deteccion. Boletin Instituto Geologico y Minero de Espana. 122:459-468.
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2011.
Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.
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2011.
Temporal variation in the sediment permeability of an intertidal sandflat. Marine Ecology Progress Series. 441:49-63.
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2011.
Tensile fracture properties of seven tropical grass species at different phenological stages. Grass and Forage Science. 66:551-559.
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2011.
Trait assembly in plant assemblages and its modulation by productivity and disturance. Oecologia. 167:209-218.
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2011.
Ambiguous genetic relationships among coconut (Cocos nucifera L.) cultivars: the effects of outcrossing, sample source and size, and method of analysis. Genetic Resources and Crop Evolution. 57:203-217.
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2010.
Analysis of anthocyanin composition and content contained from grains of the Korean purple rice varieties by liquid chromatography with diode array detection and electrospray ionization/mass spectrometry (LC-DAD-ESI/MS). Korean Journal of International Agriculture. 22:267-272.
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2010.
Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13:523-525.
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2010.
Antioxidant properties and neuroprotective capacity of strawberry tree fruit (Arbutus unedo). Nutrients. 2:214-229.
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2010.
BacA is essential for bacteroid development in nodules of galegoid, but not phaseoloid, legumes. Journal of Bacteriology. 192:2920-2928.
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