Publications list
Filters: First Letter Of Last Name is P [Clear All Filters]
Cereal landraces for sustainable agriculture. A review (Review). Agronomy for Sustainable Development. 30:237-269.
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2010.
Cereal variety identification using MALDI-TOF mass spectrometry SNP genotyping. Journal of Cereal Science. 52:356-361.
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2010.
Characterization of the interactions between Cucumber mosaic virus and Potato virus Y in mixed infections in tomato. Molecular Plant-Microbe Interactions. 23:1514-1524.
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2010.
Cucumber mosaic virus 2b protein subcellular targets and interactions: Their significance to RNA silencing suppressor activity. Molecular Plant-Microbe Interactions. 23:294-303.
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2010.
Development of a molecular cytogenetic recombination assay for barley. Cytogenetic and Genome Research. 129:154-161.
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2010.
Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.
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2010.
Estimation of maize canopy properties from remote sensing by inversion of 1-D and 4-D models. Precision Agriculture. 11:319-334.
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2010.
Ex vivo magnetic resonance imaging of crystalline lens dimensions in chicken. Molecular Vision. 16:144-153.
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2010.
Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.
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2010.
Food security: focus on agriculture. Science. 328:172-173.
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2010.
Genetic and environmental effects influencing fruit colour and QTL analysis in raspberry. Theoretical and Applied Genetics. 121:611-627.
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2010.
Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
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2010.
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2010.
The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.
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2010.
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2010.
Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.
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2010.
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2010.
Is vegetation composition or soil chemistry the best predictor of the soil microbe community? Plant and Soil. 333:417-430.
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2010.
A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
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2010.
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2010.
Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.
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2010.
Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology. 114:325-339.
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2010.
Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli. Nucleic Acids Research. 38:3054-3067.
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2010.
Profiling of phenols in human faecal water after raspberry supplementation. Journal of Agricultural and Food Chemistry. 58:10389-10395.
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2010.
Protected raspberry production accelerates onset of oviposition by vine weevils (Otiorhynchus sulcatus). Agricultural and Forest Entomology. 12:277-283.
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2010.
Relative importance of seed-tuber and soilborne inoculum in causing black dot disease of potato. Plant Pathology. 59:693-702.
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2010.
Reproductive performance of asexual clones of the peach-potato aphid (Myzus persicae, Homoptera: Aphididae) colonising Scotland in relation to host plant and field ecology. Bulletin of Entomological Research. 100:451-460.
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2010.
Reversible jump markov chain Monte Carlo methods and segmentation algorithms in hidden Markov models. Australian & New Zealand Journal of Statistics. 52:151-166.
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2010.
Rowanberry phenolics: compositional analysis and bioactivites. Journal of Agricultural and Food Chemistry. 58:11985-11992.
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2010.
The SAFE FOODS framework for improved risk analysis of foods. Food Control. 21:1566-1587.
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2010.
Sedimentary chemofacies characterization by means of multivariate analysis. Sedimentary Geology. 228:218-228.
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2010.
Signaling in induced resistance. Advances in Virus Research. 76:57-121.
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2010.
Silencing potential of viral-derived RNAi constructs in Tomato leaf curl virus-AC4 gene suppression in tomato. Transgenic Research. 19:45-55.
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2010.
Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186:755-768.
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2010.
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2010.
Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
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2010.
Symptom induction and RNA silencing suppression by the cucumber mosaic virus 2b protein. Plant Signaling & Behaviour. 5:705-708.
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2010.
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
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2010.
Variation in acrylamide producing potential in potato: Segregation of the trait in a breeding population. Food Chemistry. 123:568-573.
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2010.
Additive impacts of nitrogen deposition and grazing on a mountain moss-sedge heath. Botanica Helvetica.. 120(2):129-137.
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2010.
Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13(6):523-525.
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2010.
Are richness patterns of common and rare species equally well explained by environmental variables? Ecography. 34(4):529-539.
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2010.
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2010.
Assessing the vulnerability of blanket peat to climate change using an ensemble of statistical bioclimatic envelope models. Climate Research. 45:131-150.
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2010.
Bioclimatic envelope model of climate change impacts on blanket peatland distribution in Great Britain. Climate Research. 45:151-162.
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2010.
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2010.
Cu and Ni mobility and bioavailability in sequentially conditioned soils. Water, Air and Soil Pollution. 210(1-4):63-73.
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2010.
Degradation of metalaxyl M in contrasting soils is influenced more by differences in physicochemical characteristics than in microbial community composition after reinoculation of sterilised soils. Soil Biology and Biochemistry.. 42(7):1123-1131.
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2010.
Developing greenhouse gas marginal abatement cost curves for agricultural emissions from crops and soils in the UK. Agricultural Systems. 103(4):198-209.
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2010.
Distribution of mountain hares (Lepus timidus) in Scotland: results from a questionnaire. Mammal Review. 40(4):313-326.
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2010.
Effects of environmental pollutants on the reproduction and welfare of ruminants. Animal. 4(7):1227-1239.
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2010.
Environmental myopia: a diagnosis and a remedy. Trends in Ecology and Evolution. 25(10):556-561.
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2010.
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2010.
A functional assessment of the response of grassland vegetation to reduced grazing and abandonment. Journal of Vegetation Science.. 21(4):683-694.
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2010.
The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.
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2010.
Geophagy and potential health implications: geohelminths, microbes and heavy metals. Transactions of the Royal Society of Tropical Medicine and Hygiene. 104(12):787-795.
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2010.
Getting the timing right: antler growth phenology and sexual selection in a wild red deer population. Oecologia. 164:357-368.
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2010.
How old is the streamwater? Open questions in catchment transit time conceptualization, modelling and analysis Hydrological Processes. 24(12):1745-1754.
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2010.
The identification of priority opportunities for UK nature conservation policy. Journal of Applied Ecology. 47(5):955-965.
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2010.
Impacts of extensive grazing and abandonment on grassland soils and productivity. Agriculture, Ecosystems and Environment. 139:476-482.
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2010.
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2010.
In situ degradation characteristics as predictors of in vivo digestibility and metabolizable energy values of forages and wheat straw. Journal of Applied Animal Research. 37(1):77-81.
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2010.
Inferring networks from multivariate symbolic time series to unravel behavioural interactions among animals. Animal Behaviour. 79(2):351-359.
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2010.
Influence of prenatal nutrition and obesity on tissue specific fat mass and obesity-associated (FTO) gene expression. Reproduction. 139(1):265-274.
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2010.
Interactions among agricultural production and other ecosystem services delivered from European temperate grassland systems. Advances in Agronomy. 109:117-154.
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2010.
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2010.
Is vegetation composition or soil chemistry the best predictor of the soil microbial community? Plant and Soil. 333(1-2):417-430.
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2010.
Local and regional partnerships in natural resource management: The challenge of bridging institutional levels. Environmental Management. 46(5):711-724.
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2010.
Moving together: Incidental leaders and naive followers. Behavioural Processes. 83(3):225-241.
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2010.
Nesting preferences of the threatened wood ant Formica exsecta (Hymenoptera: Formicidae): implications for conservation in Scotland. Journal of Insect Conservation.. 14(3):269-276.
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2010.
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2010.
The non-market value of reclaimed waste water for use in agriculture: a contingent valuation approach. Spanish Journal of Agricultural Research. 8(S2):187-196.
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2010.
The ODD protocol for describing individual-based and agent-based models: A first update. Ecological Modelling. 221(23):2760-2768.
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2010.
ODD updated. Journal of Artificial Societies and Social Simulation.. 13(4):9.
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2010.
Peat, water and plant tissue chemistry monitoring: A seven-year case-study in a restored peatland. Wetlands. 30(1):159-170.
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2010.
Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). Journal of Animal Ecology. 79(2):414-425.
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2010.
Process-based principles for restoring river ecosystems. BioScience. 60(3):209-222.
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2010.
Regeneration of Salix arbuscula and Salix lapponum within a large mammal exclosure: the impacts of microsite and herbivory. Restoration Ecology. 18(Suppl. 1):1-9.
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2010.
Repeated application of diluted olive mill wastewater induces changes in the structure of the soil microbial community. European Journal of Soil Biology. 46(1):34-40.
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2010.
Riffle-pool maintenance and flow convergence routing confirmed on a large gravel bed river. Geomorphology. 114(3):143-160.
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2010.
Sexual selection for fighting skills as a driver of sexual segregation in polygynous ungulates: an evolutionary model. Animal Behaviour. 80(4):745-755.
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2010.
Simulation scenarios of spatio-temporal arrangement of crops at the landscape scale. Environmental Modelling and Software. 25(12):1881-1889.
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2010.
Size matters: large-scale replications of experiments with FEARLUS. Advances in Complex Systems. 13(4):453-467.
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2010.
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2010.
Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186(3):755-768.
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2010.
Stakeholder attitudes to multi-functional forests in Europe. Forests, Trees and Livelihoods. 19(4):341-358.
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2010.
Substrate requirements of spawning Chinook salmon (Oncorhynchus tshawytscha) are dependent on local channel hydraulics. River Research and Applications. 26(4):456-468.
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2010.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.
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2010.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
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2010.
The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.
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2010.
Using qualitative evidence to enhance an agent-based modelling system for studying land use change. Journal of Artificial Societies and Social Simulation.. 13(2)
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2010.
Valley width controls on riffle location and persistence on a gravel bed river. Geomorphology. 121(3-4):206-221.
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2010.
Variable extent of sex-biased dispersal in a strongly polygynous mammal. Molecular Ecology. 19(15):3101-3113.
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2010.
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2009.
Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues. Molecular Microbiology. 74:662-671.
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2009.
The C-terminus of the Polerovirus P5 readthrough domain limits virus infection to the phloem. Journal of Virology. 83:5419-5429. Abstract
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2009.
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2009.
Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.
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2009.
Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
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2009.
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The effect of earthworms and liming on soil microbial communities. Biology and Fertility of Soils. 45:361-369. Abstract
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2009.
Environmental and seasonal influences on red raspberry anthocyanin antioxidant contents and identification of quantitative traits loci (QTL). Molecular Nutrition and Food Research. 53:625-634. Abstract
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2009.
Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV. Molecular Plant-Microbe Interactions. 22:630-641.
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2009.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
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2009.
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2009.
The influence of RNA-dependent RNA polymerase 1 on Potato virus Y infection and on other antiviral response genes. Molecular Plant-Microbe Interactions. 22:1312-1318.
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2009.
Live biospeckle laser imaging of root tissues. European Biophysics Journal. 38:679-686. Abstract
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2009.
Long-term trends in hydro-climatology of a major Scottish mountain river. Science of the Total Environment. 407:4633-4641.
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2009.
Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.
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2009.
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2009.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
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2009.
Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
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2009.
Predicting alcohol yield from UK soft winter wheat for grain distilling: combined influence of hardness and nitrogen measurements. Journal of the Institute of Brewing. 115:183-190.
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2009.
Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Computational Biology. 5:-e1000317.
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2009.
The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant-Microbe Interactions. 22:642-654. Abstract
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2009.
Shrub encroachment can reverse desertification in semi-arid Mediterranean grasslands. Ecology Letters. 12:930-941. Abstract
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2009.
Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.
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2009.
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Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
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2009.
Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus. Virus Research. 140:216-221. Abstract
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2009.
Strategies and methods for studying the rhizosphere - the plant science toolbox. Plant and SoilPlant and Soil. 321:431-456.
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2009.
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2009.
Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
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2009.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
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2009.
Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
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2009.
Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
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2009.
The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
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2009.
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2009.
Activity and structure of methanotrophic communities in landfill cover soils. Environmental Microbiology and Environmental Microbiology Reports. 1:414-423.
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2009.
Comments on 'Baseline values and change in the soil, and implications for monitoring' by R.M. Lark, P.H. Bellamy and G.J.D. Kirk. European Journal of Soil Science. 60:481-483.
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2009.
Comments on the Regulatory Gate Hypothesis and implications for C-cycling in soil. Soil Biology and Biochemistry. 41(6):1352-1354.
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2009.
Does climate change explain the decline of a trans-Saharan Afro-Palaearctic migrant? Oecologia. 159(3):649-659.
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2009.
Don't diss integration: A comment on Ricklef's disintegrating communities. American Naturalist.. 174(6):919-927.
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2009.
e-Social science and evidence-based policy assessment: challenges and solutions. Social Science Computer Review. 27(4):553-568.
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2009.
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2009.
Effect of continuous olive mill wastewater applications, in the presence and absence of N fertilization, on the structure of the soil fungal communiies. FEMS Microbiology Ecology. 70(3):388-401.
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2009.
The effect of host movement on viral transmission dynamics in a vector-borne disease system. Parasitology. 136(10):1221-1234.
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2009.
The effect of restoration techniques on non-target species: case studies in moorland systems. Applied Vegetation Science. 12(1):81-91.
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2009.
Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies. Soil Biology and Biochemistry. 41(11):2292-2298.
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2009.
Evaluating extensive sheep farming systems. Aspects of Applied Biology, 93, 161-166. Proceedings of the Integrated Agricultural Systems: Methodologies, Modelling and Measurement Conference, Edinburgh, UK, 2-4, June 2009.. 93:161-166.
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Functional principal component data analysis: A new method for analysing microbial community fingerprints. Journal of Microbiological Methods. 79(1):89-95.
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A GIS-based human health risk assessment for urban green space planning -- An example from Grugliasco (Italy). The Science of the Total Environment. 407(23):5961-5970.
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2009.
Habitat preferences and interannual variability in occurrence of the harbour porpoise Phocoena phocoena off north-west Scotland (UK). Marine Ecology Progress Series. 381:297-310.
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2009.
Homozygosity for a single base-pair mutation in the oocytespecific GDF9 gene results in sterility in Thoka sheep. Reproduction. 138:921-933.
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2009.
Identification of strategic drivers for extensive hill sheep farms post CAP reform. Proceedings of the Integrated Agricultural Systems: Methodologies, Modelling and Measurements Conference, Edinburgh, UK. 2-4 June 2009. Aspects of Applied Biology, 93, 187-192.. 93:187-192.
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2009.
Influence of livestock grazing on meadow pipit foraging behaviour in upland grassland. Basic and Applied Ecology. 10:662-670.
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2009.
Influence of physical disturbance on habitats and biological communities in lowland streams. Fundamental and Applied Limnology. 174(1):27-41.
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2009.
An inter-laboratory comparison of multi-enzyme and multiple substrate-induced respiration assays to assess method repeatability in soil monitoring. Biology and Fertility of Soils. 45(6):623-633.
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2009.
Is legislation a barrier to the sustainable management of game species? A case study of wild deer in Britain Journal of Environmental Planning and Management. 52(8):993-1012.
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2009.
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2009.
Isolation of habitat patches limits colonisation by moorland Hemiptera. Journal of Insect Conservation. 13:29-36.
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2009.
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2009.
Long-term impacts of extensive grazing and abandonment on the species composition, richness, diversity and productivity of agricultural grassland. Agriculture, Ecosystems and Environment.. 134:190-200.
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2009.
Long-term trends in hydroclimatology of a Scottish mountain river. The Science of the Total Environment. 407(16):4633-4641.
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2009.
Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3(5):744-752.
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2009.
Modelling nutritional interactions: from individuals to communities. Trends in Ecology and Evolution.. 25(1):53-60.
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2009.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology. 11(10):2510-2525.
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2009.
Ontologies for transparent integrated human-natural system modelling. Landscape Ecology. 24(9):1255-1267.
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2009.
Possible consequences of the Copenhagen climate change meeting for conservation of animals. Animal Conservation. 12(6):503-504.
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2009.
Potential and realised contribution of endozoochory to seedling establishments. Basic and Applied Ecology. 10(7):656-661.
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2009.
Reciprocal carbon and nitrogen transfer between an ericaceous dwarf shrub and fungi isolated from Piceirhiza bicolorata ectomycorrhizas. New Phytologist. 182(2):359-366.
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2009.
Relative climatic, edaphic and management controls of plant functional trait signatures. Journal of Vegetation Science. 20(1):148-159.
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2009.
Setting sustainable grazing levels for heather moorland: a multi-site analysis. Journal of Applied Ecology. 46(2):363-368.
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2009.
Spatial distribution of fungal communities in a coastal grassland soil. Soil Biology and Biochemistry. 41(2):414-416.
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2009.
Through the eye of the needle: A review of isotope approaches to quantify processes mediating soil carbon balance. New Phytologist. 184:19-33.
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2009.
Variable extent of hybridization between invasive sika (Cervus nippon) and native red deer (C-elaphus) in a small geographical area. Molecular Ecology. 18(5):862-876.
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2009.
When and how to imitate your neighbours: lessons from and for FEARLUS. Journal of Artificial Societies and Social Simulation. 12(3):2.
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2009.
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2008.
Acute toxicity of high doses of the glycoalkaloids, . Journal of Agricultural and Food Chemistry. 56:8753-8760. Abstract
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2008.
Ascorbic acid conjugates isolated from the phloem of Cucurbitaceae. Phytochemistry. 69:1850-1858. Abstract
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2008.
Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.
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2008.
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2008.
Characterisation of Fusarium sp. responsible for causing dry rot of potato in Great Britain. Plant Pathology. 57:262-271. Abstract
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2008.
Characterisation of the cellulose binding protein Mj-cbp-1 of the root knot nematode, Meloidogyne javanica. Physiological and Molecular Plant Pathology. 72:21-28. Abstract
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2008.
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2008.
Clonal turnover of MACE-carrying peach-potato aphids (Myzus persicae (Sulzer), Homoptera: Aphididae) colonizing Scotland. Bulletin of Entomological Research. 98:115-124. Abstract
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2008.
Colonisation outwith the colon: plants as an alternative environmental reservoir for human pathogenic enterobacteria. FEMS Microbiology ReviewsFEMS Microbiology Reviews. 33:689-703.
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2008.
The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection. Nucleic Acids Research. 36:1057-1071. Abstract
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2008.
Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley. Theoretical and Applied Genetics. 117:261-272. Abstract
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2008.
Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes. Journal of Experimental Botany. 59:4219-4231. Abstract
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2008.
FTIR spectroscopy can be used as a screening tool for organic matter quality in regenerating cutover peatlands. Soil Biology & Biochemistry. 40:515-527. Abstract
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2008.
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2008.
Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Functional & Integrative Genomics. 8:329-340. Abstract
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2008.
Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.
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2008.
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.
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2008.
Immunogenicity of proteome-determined Mycobacterium avium subsp paratuberculosis-specific proteins in sheep with Paratuberculosis. Clinical and Vaccine Immunology. 15:1824-1833.
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2008.
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2008.
Mapping adaptation of barley to droughted environments. Euphytica. 161:35-45. Abstract
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2008.
Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract
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2008.
The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
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2008.
Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistance. Current Opinion in Plant Biology. 11:373-379. Abstract
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2008.
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2008.
The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector. Molecular Plant-Microbe Interactions. 21:1460-1470. Abstract
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2008.