Publications list
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Social representations of governance for change towards sustainability: perspectives of sustainability advocates. Environmental Politics. 27:621-643.
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2018.
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2010.
Soil biota, carbon cycling and crop plant biomass responses to biochar in a temperate mesocosm experiment. Plant and Soil. 440:341-356.
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2019.
Soil carbon 4 per mille. Geoderma. 292:59-86.
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2017.
Soil characterisation by bacterial community analysis for forensic applications: a quantitative comparison of environmental technologies. Forensic Science International. 26:21-29.
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2016.
Soil characterisation by bacterial community analysis for forensic applications: a quantitative comparison of environmental technologies. Forensic Science International. 26:21-29.
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2017.
Soil characteristics determine the rhizobia in association with different species of Mimosa in central Brazil. Plant and Soil. 423:411-428.
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2018.
Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.
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2009.
Soil degradation, farming practices, institutions and policy responses: An analytical framework. Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies.. 22:32-46.
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2011.
Soil eaten by chacma baboons adsorbs polar plant secondary metabolites representative of those found in their diet. Environmental Geochemistry and Health.
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2018.
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2009.
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2017.
Soil management in relation to sustainable agriculture and ecosystem services. Food Policy. 36:S72-S87.
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2011.
Soil microbial and faunal responses to herbicide tolerant maize and herbicide in two soils. Plant and Soil. 308:93-103. Abstract
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2008.
Soil nematode abundance and functional group composition at a global scale. Nature. 572:194-198.
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2019.
Soil nitrogen availability alters rhizodeposition carbon flux into the soil microbial community. Journal of Soils and Sediments. 16:1472-1480.
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2016.
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2009.
Soil organic carbon sequestration and mitigation potential in a rice cropland in Bangladesh - a modelling approach. Field Crops Research. 226:16-27.
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2018.
Soil organic carbon sequestration rates in vineyard agroecosystems under different soil management practices: a meta-analysis. Journal of Cleaner Production. 290:ArticleNo.125736.
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2021.
Soil organic matter decomposition and carbon sequestration in temperate coniferous forest soils affected by soluble and insoluble spruce needle fractions. Soil Biology and Biochemistry. 138:ArticleNo.107595.
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2019.
Soil organic matters. European Journal of Soil Science. 62:1-4.
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2011.
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2015.
Soil-specific response functions of organic matter mineralization to the availability of labile carbon. Global Change Biology. 19:1562-1571.
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2013.
Sorption and desorption of cadmium and zinc in two tropical soils amended with sugarcane-straw-derived biochar. Journal of Soils and Sediments. 16:226-234.
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2016.
Soy expansion, environment and human development: an analysis across Brazilian municipalities. Sustainability. 13:ArticleNo.7246.
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2021.
Spatial agent-based models for socio-ecological systems: challenges and prospects. Environmental Modelling and Software. 45:1-7.
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2013.
Spatial analysis of ectomycorrhizal fungi reveals that root tip communities are structured by competitive interactions. Molecular Ecology. 21:5110-5123.
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2012.
Spatial and temporal dynamics of Myzus persicae clones in fields and suction traps. Agricultural and Forest Entomology. 10:91-100. Abstract
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2008.
Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186:755-768.
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2010.
Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186(3):755-768.
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2010.
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2011.
Spatial assessment of land degradation through key ecosystem services: the role of globally available data. Science of the Total Environment. 628-629:539-555.
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2018.
Spatial Bayesian belief networks as a planning decision tool for mapping ecosystem services trade-offs on multifunctional forested landscapes. Environmental Research. 144:15-26.
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2016.
The spatial distribution of canopy-resident and ground-resident cereal aphids (Sitobion avenae and Metopolophium dirhodum) in winter wheat. Arthropod-Plant Interactions. 7:21-32.
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2013.
Spatial distribution of fungal communities in a coastal grassland soil. Soil Biology and Biochemistry. 41(2):414-416.
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2009.
Spatial heterogeneity in climate change effects decouples the long-term dynamics of wild reindeer populations in the high Arctic. Global Change Biology. 25:2656-2668.
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2019.
Spatial justice on the horizon? A combined theory of change scenario tool to assess place-based interventions European Planning Studies. Published online..
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2021.
Spatial pattern and species richness of boreonemoral forest understorey and its determinants - A comparison of differently managed forests. Forest Ecology & Management. 250:64-70. Abstract
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2007.
Spatial variation in soil properties and diffuse losses between and within grassland fields with similar short-term management. European Journal of Soil Science. 67:386-396.
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2016.
Spatially segregated foraging patterns of moose (Alces alces) and mountain hare (Lepus timidus) in a subarctic landscape: different tables in the same restaurant? Canadian Journal of Zoology. 93:391-396.
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2015.
Spatio-temporal MODIS EVI gap filling under cloud cover: an example in Scotland. ISPRS Journal of Photogrammetry and Remote Sensing. 72:56-72.
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2012.
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2012.
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2018.
A SPE-HPLC-MSMS method for the simultaneous determination of prioritised pharmaceuticals and EDCs with high environmental risk potential in freshwater. Journal of Environmental Science. 100:18-27.
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2021.
Special issue: agent-based modelling of land use effects on ecosystem processes and services. Journal of Land Use Science. 6:75-81.
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2011.
Special section guest editorial: Recent advances in earth observation technologies for agrometeorology and agroclimatology. Journal of Applied Remote Sensing. 12:ArticleNo.022201.
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2018.
Species but not genotype diversity strongly impacts the establishment of rare colonisers. Functional Ecology. 31:1462-1470.
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2017.
Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
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2009.
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2010.
Spectroscopic techniques applied to discriminate soils for forensic purposes. Soil Research. 58:151-160.
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2020.
SPICY: towards automated phenotyping of large pepper plants in the greenhouse. Functional Plant Biology. 39:870-877.
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2012.
The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112:9382-9387.
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2015.
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2016.
Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus. Virus Research. 140:216-221. Abstract
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2009.
Stability and variability of virulence of Phytophthora infestans assessed in a ring test across European laboratories. Plant Pathology. 60:556-565.
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2011.
Stability of recombinant plant viruses containing genes of unrelated plant viruses. Journal of General Virology. 88:1347-1355. Abstract
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2007.
Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
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2005.
Stable carbon isotope analysis of fluvial sediment fluxes over two contrasting C4-C3 semi-arid vegetation transitions. Rapid Communications in Mass Spectrometry. 26:2386-2392.
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2012.
Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
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2005.
Stakeholder attitudes to multi-functional forests in Europe. Forests, Trees and Livelihoods. 19(4):341-358.
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2010.
Standardized and transparent model descriptionsfor agent-based models - current status and prospects. Environmental Modelling and Software. 55:156-163.
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2014.
A standardized methodology to assess the effects of land use change on plant traits, communities and ecosystem functioning in grasslands. Annals of Botany. 99(5):967-985.
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2007.
State-space modelling of the drivers of movement behaviour in sympatric species. PLoS ONE. 10:e0142707.
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2015.
Statistical models to evaluate invertebrate-plant trophic interactions in arable systems. Bulletin of Entomological Research. 97:265-280. Abstract
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2007.
Status and prospects of plant virus control through interference with vector transmission. Annual Review of Phytopathology, 51,177-201.. 51:177-201.
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2013.
Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.
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2011.
Stitching organelles: organization and function of specialized membrane contact sites in plants. Trends in Cell Biology. 26:705-717.
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2016.
Stochastic modelling of ecological processes using hybrid Gibbs samplers. Ecological Modelling. 198(1-2):40-52.
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2006.
Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
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2010.
Strategies and methods for studying the rhizosphere - the plant science toolbox. Plant and SoilPlant and Soil. 321:431-456.
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2009.
Straw amendment to paddy soil stimulates denitrification but biochar amendment promotes anaerobic ammonia oxidation. Journal of Soils and Sediments..
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2017.
Straw amendment to paddy soil stimulates denitrification but biochar amendment promotes anaerobic ammonia oxidation. Journal of Soils and Sediments. 17:2428-2437.
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2017.
Striking a balance between in-person care and the deployment of eHealth to support the older rural population with chronic pain. International Journal of Qualitative Studies on Health and Well-Being. 10
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2015.
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2013.
The sub-cellular localisation of the potato (Solanum tuberosum L.) carotenoid biosynthetic enzymes, CrtRb2 and PSY2. Protoplasma. 250:1381-1392.
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2013.
Subcellular distribution of mutant movement proteins of Cucumber mosaic virus fused to green fluorescent proteins. Journal of General Virology. 86:1223-1228. Abstract
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2005.
Substrate requirements of spawning Chinook salmon (Oncorhynchus tshawytscha) are dependent on local channel hydraulics. River Research and Applications. 26(4):456-468.
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2010.
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2021.
Supporting the role of small farms in the European regional food systems: What role for the science-policy interface? Global Food Security. 28:ArticleNo.100433.
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2021.
Surface coat proteins of the potato cyst nematode, Globodera rostochiensis. Nematology. 23:113-123.
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2021.
A surface loop of the potato leafroll virus coat protein is involved in virion assembly, systemic movement and aphid transmission.. Journal of Virology. 79:1207-1214. Abstract
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2005.
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2021.
Sustainable governance of natural resources and institutional change - an analytical framework. Public Administration and Development. 27(2):123-137.
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2007.
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2009.
Sustainable management of the Southern root-knot nematode, Meloidogyne incognita (Kofoid and White) Chitwood, by means of amendments of Fumaria parviflora. International Journal of Agriculture and Biology. 17:289-296.
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2015.
Sustainable use of organic resources for bioenergy, food and water provision in rural Sub-Saharan Africa. Renewable and Sustainable Energy Reviews. 50:903-917.
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2015.
Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. ISME Journal. 8:1336-1345.
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2013.
Symplastic connection is required for bud outgrowth following dormancy in potato (Solanum tuberosum L.) tubers. Plant, Cell and Environment. 30:973-983. Abstract
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2007.
Symptom induction and RNA silencing suppression by the cucumber mosaic virus 2b protein. Plant Signaling & Behaviour. 5:705-708.
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2010.
The synaptonemal complex protein ZYP1 is required for imposition of meiotic crossovers in barley. The Plant Cell. 26:729-740.
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2014.
A synthetic system for expression of components of a bacterial microcompartment. Microbiology-SGM. 159:2427-2436.
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2013.
A systematic review of methods for studying the impacts of outdoor recreation on terrestrial wildlife. Global Ecology and Conservation. 22:ArticleNo.e00917.
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2022.
Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
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2012.
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2011.
Tackling the challenge of interdisciplinary energy research: A research toolkit. Energy Research and Social Sciences. 74:ArticleNo.101966.
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2021.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.
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2010.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26:328-336.
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2011.
Technology for older adults: maximising personal and social interaction: exploring opportunities for eHealth to support the older rural population with chronic pain. Scottish Geographical Journal. 131:181-193.
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2015.
Tecnicas composicionales para concentraciones geoquimicas por debajo del limite de deteccion. Boletin Instituto Geologico y Minero de Espana. 122:459-468.
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2011.
Temperate airborne grass pollen defined by spatio-temporal shifts in community composition. Nature Ecology and Evolution. 3:750-754.
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2019.
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2015.
Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.
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2011.
Temperature sensitivity of substrate-use efficiency can result from altered microbial physiology without change to community composition. Soil Biology and Biochemistry. 109:59-69.
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2017.
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2009.
Temporal dynamism of resource capture: a missing factor in ecology? Trends in Ecology and Evolution. 33:277-286.
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2018.
Temporal responses of propagule banks during ecological restoration in the UK. Restoration Ecology. 15(1):103-117.
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2007.
Temporal variability in domestic point source discharges and their associated impact on receiving waters. Science of the Total Environment. 571:1275-1283.
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2016.
Temporal variation in the sediment permeability of an intertidal sandflat. Marine Ecology Progress Series. 441:49-63.
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2011.
Tensile fracture properties of seven tropical grass species at different phenological stages. Grass and Forage Science. 66:551-559.
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2011.
Terrestrial nitrogen cycling in earth system models revisited. New Phytologist. 210:1165-1168.
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2016.
Testing scenarios to achieve workplace sustainability goals using backcasting nad agent-based modeling. Environment and Behavior. 49:1007-1037.
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2017.
Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment. New Phytologist. 196:101-109.
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2012.
TetraploidSNPMap: Software for linkage analysis and QTL mapping in autotetraploid populations using SNP dosage data. Journal of Heredity. 108:438-442.
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2017.
Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
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2009.
Thermophilic versus mesophilic dark fermentation in xylose-fed fluidised bed reactors: Biohydrogen production and active microbial community. International Journal of Hydrogen Energy. 43:5473-5485.
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2018.
Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
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2012.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
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2009.
Through the eye of the needle: A review of isotope approaches to quantify processes mediating soil carbon balance. New Phytologist. 184:19-33.
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2009.
Tinkering with turbines: ethics and energy decentralisation in Scotland. Anthropological Quarterly. 91:709-748.
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2018.
Tiny niches and translocations: the challenge of identifying suitable recipient sites for small and immobile species. Journal of Applied Ecology. 55:621-630.
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2018.
Tissue-dependent limited pleiotropy affects gene expression in barley. Plant Journal. 56:287-296.
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2008.
Too much of a good thing? Using a spatial agent-based model of transport to evaluate workplace sharing programs in Aberdeen Journal of Transport Geography. 69:83-97.
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2018.
The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.
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2015.
Top 10 plant parasitic nematodes in molecular plant pathology. Molecular Plant Pathology. 14:946-961.
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2013.
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2019.
Towards a method of evaluating social innovation in forest-dependent communities: Firsy suggestions from a a science-stakeholder collaboration. Forest Policy and Economics. 104:9-22.
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2019.
Towards a microbial process-based understanding of the resilience of peatland ecosystem service provisioning - a research agenda. Science of The Total Environment. 759:ArticleNo.143467.
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2020.
Towards genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles. G3 Genes, Genomes, Genetics. 11:ArticleNo.jkaa058.
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2021.
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2008.
Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
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2009.
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2006.
Tracing N, K, Mg and Ca released from decomposing biomass to new tree growth. Part II: A model system simulating root decomposition on clearfell sites. Biomass and Bioenergy. 30(12):1060-1066.
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2006.
Tracing the ancestry of modern bread wheats. Nature Genetics. 51:905-911.
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2019.
Tracking (poly)phenol components from raspberries in ileal fluid. Journal of Agricultural and Food Chemistry. 62:7631-7641.
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2014.
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2016.
Trafficking arms: oomycete effectors enter host plant cells. Trends in Microbiology. 14:8-11. Abstract
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2006.
Trait assembly in plant assemblages and its modulation by productivity and disturance. Oecologia. 167:209-218.
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2011.
A trait-based approach to crop-weed interactions. European Journal of Agronomy. 70:22-32.
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2015.
Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.
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2020.
Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
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2009.
Transcriptional response of Pseudomonas aeruginosa to a phosphate-deficient Lolium perenne rhizosphere. Plant and Soil. 359:25-44.
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2012.
The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
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2009.
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2014.
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2017.
A transdisciplinary approach to the economic analysis of the European Water Framework Directive. Ecological Economics. 116:34-45.
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2015.
Transformation of vanadinite (Pb5(VO4)3Cl) by fungi. Environmental Microbiology. Published online..
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2014.
Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
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2012.
Transient and asymptotic dynamics of reinforcement learning in games. Games and Economic Behavior. 61(2):259-276.
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2007.
Transition to density dependence in a reintroduced ecosystem engineer. Biodiversity and Conservation. 28:3803-3830.
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2019.
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2007.
Transmission of pro-environmental norms in large organizations. Sustainable Production and Consumption. 19:25-32.
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2019.
Treatment of organic resources before soil incorporation in semi-arid regions improves resilience to El Nino, and increases crop production and economic returns. Environmental Research Letters. 14:ArticleNo.085004.
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2019.
Trend analysis for integrated regional climate change impact assessments in the Lusatian river catchments (north-eastern Germany). Regional Environmental Change. 17:1751-1762.
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2017.
The tribunal atmosphere: On qualitative barriers to access to justice. Geoforum. 119:61-71.
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2021.
TRY plant trait database - enhanced coverage and open access. Global Change Biology. 26:119-188.
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2020.
Twenty three unsolved problems in hydrology (UPH) - a community perspective. Hydrological Sciences Journal.. 64:1141-1158.
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2019.
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
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2010.
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2022.
Two lowland stream riffles - linkages between physical habitats and macroinvertebrates across multiple spatial scales. Aquatic Ecology. 41(3):475-490.
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2007.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
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2010.
UK food and nutrition security during and after the COVID-19 pandemic. Nutrition Bulletin. 46:88-97.
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2021.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
Uncovering mechanisms behind mosquito seasonality by integrating mathematical models and daily empirical population data: Culex pipiens in the UK. Parasites and Vectors. 12:ArticleNo.74.
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2019.
Underground allies: how and why do mycelial networks help plants defend themselves? BioEssays. 36:21-26.
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2014.
Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack. Ecology Letters. 16:835-843.
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2013.
Understanding H-2/H-1 systematics of leaf wax n-alkanes in coastal plants at Stiffkey saltmarsh, Norfolk, UK. Geochimica et Cosmochimica Acta.. 128:13-28.
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2014.
Understanding social innovation for the well-being of forest-dependent communities: a preliminary theoretical framework. Forest Policy and Economics. 97:163-174.
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2018.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments. Rapid Communications in Mass Spectrometry. 26:2413-2421.
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2012.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments (vol 26, pg 2413, 2012). (Correction). Rapid Communications in Mass Spectrometry. 27:284.
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2013.
Understorey plant community composition reflects invasion history decades after invasive Rhododendron has been removed. Journal of Applied Ecology. 55:874-884.
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2018.
Unearthing the picturesque: the validity of the preference matrix as a measure of landscape aesthetics. Landscape and Urban Planning. 124:1-13.
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2014.
The unfolded protein response and programmed cell death are induced by expression of garlic virus X p11 in Nicotiana benthamiana. Journal of General Virology. 97:1462-1468.
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2016.
A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics. 8:973-982. Abstract
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2007.
The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.
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2010.
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research. 47:D259-D264.
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2019.
Unpacking the people - biodiversity paradox: a conceptual framework. Bioscience. 66:576-583.
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2016.
Unpredictable assembly of arbuscular mycorrhizal fungal communities. Pedobiologia. 59:11-15.
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2016.
Unravelling complexity in inter-species interaction through nonlinear dynamical models. Acta Ethologica. 16:21-30.
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2013.
Uranium phosphate biomineralization by fungi. Environmental Microbiology. 17:2064-2075.
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2015.
Urban geochemistry: research strategies to assist risk assessment and remediation of brownfield sites in urban areas. Environmental Geochemistry and Health. 30:565-576.
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2008.
Urinary metabolite profiling identifies novel colonic metabolites and conjugates of phenolics in healthy volunteers. Molecular Nutrition and Food Research. 58:1414-1425.
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2014.
Use of near-infrared reflectance spectroscopy to predict the percentage of dead versus living grass roots. Plant and Soil. 317(1-2):309-320.
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2008.
Use of quantitative molecular diagnostic assays to investigate Fusarium dry rot in potato stocks and soil. Phytopathology. 95:1462-1471. Abstract
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2005.
Use of simple rainfall-runoff models as a baseline for the benchmarking of the hydrological component of complex catchment models. Archiv fur Hydrobiologie. Large Rivers Supplement.. 17(102):75-96.
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2006.
Using agent-based models for prediction in complex and wicked systems. Journal of Artificial Societies and Soicial Simulation. 24:ArticleNo.2.
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2021.
Using compositional and functional indicators for biodiversity conservation monitoring of semi-natural grasslands in Scotland. Biological Conservation. 175:82-93.
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2014.
Using mental models to understand soil management. Soil Use and Management.
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2016.
Using mental models to understand soil management. Soil Use and Management. 32:36-44.
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2016.
Using model-based proposals for fast parameter inference on discrete state space, continuous-time Markov processes. Journal of the Royal Society Interface. 12:ArticleNo.20150225.
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2015.
Using multistage design-based methods to construct abundance indices and uncertainty measures for delta smelt. Transactions of the American Fisheries Society. 148:710-724.
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2019.
Using plant functional traits as a link between land use and bee foraging abundance. Acta Oecologia. 50:32-39.
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2013.
Using qualitative evidence to enhance an agent-based modelling system for studying land use change. Journal of Artificial Societies and Social Simulation.. 13(2)
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2010.
Using species records and ecological attributes of bryophytes to develop an ecosystem health indicator. Ecological Indicators. 104:127-136.
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2019.
Using Tablet for visual exploration of second generation sequencing data. Briefings in Bioinformatics. 14:193-202.
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2013.
Using the ODD protocol for comparing three agent-based social simulation models of land use change. Journal of Artificial Societies and Social Simulation. 11(2):3.
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2008.
Utilizing low-cost natural waste for the removal of pharmaceuticals from water: Mechanisms, isotherms and kinetics at low concentrations. Journal of Cleaner Production. 227:88-97.
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2019.
Valley width controls on riffle location and persistence on a gravel bed river. Geomorphology. 121(3-4):206-221.
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2010.
Values below detection limit in compositional chemical data. Analytica Chimica Acta. 764:32-43.
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2013.