Publications list
Filters: First Letter Of Last Name is P [Clear All Filters]
Identification of Globodera rostochiensis and G. pallida in the Ukraine by PCR. European Journal of Plant Pathology. 111:39-46. Abstract
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2005.
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2008.
Global environmental change: local perceptions, understandings, and explanations. Ecology and Society. 21:ArticleNo.25.
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2016.
Stable carbon isotope analysis of fluvial sediment fluxes over two contrasting C4-C3 semi-arid vegetation transitions. Rapid Communications in Mass Spectrometry. 26:2386-2392.
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2012.
Woody plant encroachment into grasslands leads to accelerated erosion of previously stable organic carbon from dryland soils. Journal of Geophysical Research-Biogeosciences. 119:2345-2357.
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2014.
Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions. Earth Surface Processes and Landforms. 38:1602-1611.
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2013.
Impacts of climate, host and landscape factors on Culicoides species in Scotland. Medical and Veterinary Entomology. 26:168-177.
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2012.
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2021.
Examining phenotypic traits contributing to the spread in northern European potato crops of EU_41_A2, a new clonal lineage of Phytophthora infestans. a new clonal lineage of Phytophthora infestans.. :414-421.
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2021.
Examining phenotypic traits contributing to the spread in northern European potato crops of EU_41_A2, a new clonal lineage of Phytophthora infestans. a new clonal lineage of Phytophthora infestans.. :414-421.
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2021.
Cadmium, lead, and zinc mobility and plant uptake in a mine soil amended with sugarcane straw biochar. Environmental Science and Pollution Research. 22:17606-17614.
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2015.
Biochar application to a contaminated soil reduces the availability and plant uptake of zinc, lead and cadmium. Journal of Environmental Management. 159:86-93.
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2015.
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2008.
Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.
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2008.
Employment effects of private investment initiatives in rural areas of southern Europe: a regional SAM approach. Agricultural Economics Review (Greek Association of Agricultural Economists). 12:50-61.
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2011.
Essay - The role of ecological theory in microbial ecology. Nature Reviews Microbiology. 5(5):384-392.
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2007.
Mechanistic interpretation of the varying selectivity of Cesium-137 and potassium uptake by radish (Raphanus sativus L.) under field conditions near Chernobyl. Journal of Environmental Radioactivity. 152:85-91.
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2016.
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2013.
Draft Genome Sequences of 17 isolates of the plant pathogenic bacterium Dickeya. Genome Announcements. 1:e00978-13.
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2013.
GenomeDiagram: A python package for the visualisation of large-scale genomic data. Bioinformatics. 22:616-617. Abstract
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2006.
The zigzag model of plant-microbe interactions: is it time to move on? Molecular Plant Pathology. 15:865-870.
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2014.
Draft genome sequences of four Dickeya dianthicola and four Dickeya solani strains. Genome Announcements. 1:e0087-12.
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2013.
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2012.
A general model of error-prone PCR. Journal of Theoretical Biology. 234:497-509. Abstract
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2005.
Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens. Analytical Methods. 8:12-24.
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2016.
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2011.
Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.
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2009.
Birds bias offspring sex ratio in response to livestock grazing. Biology Letters. 7:958-960.
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2011.
Are scientific editors reliable gatekeepers of the publication process. Biological Conservation. 238:ArticleNo.108232.
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2019.
Biodiversity gains? The debate on changes in local- vs global-scale species richness Biological Conservation. 219:A1-A3.
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2018.
Molecular analysis of Phytophthora diversity in nursery-grown ornamental and fruit plants. Plant Pathology. 64:1308-1319.
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2015.
Metabarcoding analysis of phytophthora diversity using genus-specific primers and 454 pyrosequencing. Phytopathology. 106:305-313.
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2016.
Surface coat proteins of the potato cyst nematode, Globodera rostochiensis. Nematology. 23:113-123.
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2021.
Complex responses to movement-based disease control: when livestock trading helps. Journal of the Royal Society Interface. 14:ArticleNo.20160531.
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2017.
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2014.
When to kill a cull: factors affecting the success of culling wildlife for disease control. Journal of the Royal society Interface. 16:ArticleNo.20180901.
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2019.
CO2 fluxes from drained and rewetted peatlands using a new ECOSSE model water table simulation approach. Science of Total Environment. 754:ArticleNo.142433.
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2021.
Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.
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2010.
A rapid marker ordering approach for high-density genetic linkage maps in experimental autotetraploid populations using multidimensional scaling. Theoretical and Applied Genetics. 129:2117-2132.
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2016.
Learning-induced switching costs in a parasitoid can maintain diversity of host aphid phenotypes although biocontrol is destabilised under abiotic stress. Journal of Animal Ecology.. 89:1216-1229.
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2020.
Improved models of the effects of winter chilling on blackcurrant (Ribes nigrum L.) show cultivar specific sensitivity to warm winters. Agricultural and Forest and Meteorology. 280:ArticleNo.UNSP107777.
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2020.
Restoration trajectory of carabid functional traits in a formerly afforested blanket bog. Acta Zoologica Academiaea Scientiarum Hungaricae. 65:33-56.
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2019.
Silencing potential of viral-derived RNAi constructs in Tomato leaf curl virus-AC4 gene suppression in tomato. Transgenic Research. 19:45-55.
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2010.
Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.
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2009.
Infra-red thermography for high throughput field phenotyping in Solanum tuberosum. PLoS ONE. 8:e65816.
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2013.
Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth. Theoretical and Applied Genetics. 127:2159-2171.
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2014.
Spectroscopic techniques applied to discriminate soils for forensic purposes. Soil Research. 58:151-160.
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2020.
Effects of biochar on properties of tropical sandy soils under organic agriculture. Journal of Agricultural Science, 13, 1.
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2021.
Local and regional partnerships in natural resource management: The challenge of bridging institutional levels. Environmental Management. 46(5):711-724.
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2010.
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2016.
Using mental models to understand soil management. Soil Use and Management.
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2016.
Soil degradation, farming practices, institutions and policy responses: An analytical framework. Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies.. 22:32-46.
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2011.
Achieving on-farm practice change through facilitated group learning: evaluating the effectiveness of monitor farms and discussion groups. Journal of Rural Studies. 56:1-11.
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2017.
How should rural policy be evaluated if it aims to foster community involvement in environmental management? Journal of Rural Studies. 37:120-1`31.
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2015.
Using mental models to understand soil management. Soil Use and Management. 32:36-44.
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2016.
The challenge of developing effective soil conservation policies (editorial). Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies. 22:1-4.
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2011.
Agri-environmental collaboratives as bridging organisations in landscape management. Journal of Environmental Management. 161:375-384.
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2015.
Incentives and enforcement: the institutional design and policy mix for soil conservation in Brandenburg (Germany). Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies. 22:111-123.
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2011.
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2012.
Agri-environmental collaboratives for landscape management in Europe. Current Opinion in Environmental Sustainability. 12:59-66.
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2015.
Criteria for a system level evaluation of farm advisory services. Land Use Policy. 61:86-98.
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2017.
The pseudogenes of barley. The Plant Journal. 93:502-514.
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2018.
The pseudogenes of barley. Plant Journal. 93:502-514.
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2018.
Ground beetle (Coleoptera: Carabidae) population declines and phenological changes: is there a connection? Ecological Indicators. 41:15-24.
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2014.
Irreproducibility in searches of scientific literature: A comparative analysis. Nature Methods. 11:14658-14668.
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2021.
Phenological changes of the most commonly-sampled ground beetle (Coleoptera: Carabidae) species in the UK environmental change network. International Journal of Biometeorology. 62:1063-1074.
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2018.
Phenological changes of the most commonly-sampled ground beetle (Coleoptera: Carabidae) species in the UK Environmental Change Network. International Journal of Biometeorology. Published online..
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2018.
Long-term changes in ground beetle (Coleoptera: Carabidae) assemblages in Scotland. Ecological Entomology. 41:157-167.
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2016.
Changes in the phenology of the ground beetle Pterostichus madidus (Fabricius, 1775). Insect Science. 18:462-472.
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2011.
Soil management in relation to sustainable agriculture and ecosystem services. Food Policy. 36:S72-S87.
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2011.
Soil organic matters. European Journal of Soil Science. 62:1-4.
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2011.
Deterministic processes vary during community assembly for ecologically dissimilar taxa. Nature Communications. 6
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2015.
Extraction and identification of antioxidant polyhydroxynaphthoquinone pigments from the sea urchin, Psammechinus miliaris. LWT - Food Science and Technology. 59:455-460.
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2014.
Unpredictable assembly of arbuscular mycorrhizal fungal communities. Pedobiologia. 59:11-15.
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2016.
Evolution of the seed dispersal system in barley. Cell. 162:527-539.
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2015.
Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
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2007.
Oceans of opportunity or stormy seas? What does the future hold for developments in European marine policy Philosophical Transactions of the Royal Society of London, A.. 370:5682-5700.
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2012.
Do Marine Protected Areas deliver flows of ecosystem services to support human welfare? Marine Policy. 44:139-148.
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2014.
Comments on 'Baseline values and change in the soil, and implications for monitoring' by R.M. Lark, P.H. Bellamy and G.J.D. Kirk. European Journal of Soil Science. 60:481-483.
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2009.
Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
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2009.
Tissue-dependent limited pleiotropy affects gene expression in barley. Plant Journal. 56:287-296.
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2008.
The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
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2009.
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2008.
Applying pedagogical theories to analyse and understand learning in participatory scenario planning. Futures. 128:ArticleNo.102710.
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2021.
Dynamic modeling and target loads of sulfur and nitrogen for surface waters in Finland, Norway, Sweden, and the United Kingdom. Environmental Science and Technology. 53:5062-5070.
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2019.
A model to test how ticks and louping ill virus can be controlled by treating red grouse with acaricide. Medical and Veterinary Entomology. 27:237-246.
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2013.
An alternative to killing? Treating wildlife to protect a valuable species from a shared parasite Parasitology. 140:247-257.
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2013.
Controlling tick borne diseases through domestic animal management: a theoretical approach. Theoretical Ecology. 4:321-339.
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2011.
Food security: focus on agriculture. Science. 328:172-173.
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2010.
Endophytic bacterial diversity in poplar trees growing on a btex-contaminated site: the characterisation of isolates with potential to enhance phytoremediation. Systematic and Applied Microbiology. 29(7):539-556.
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2006.
Baseline health and disease assessment of founder eastern quolls (Dasyurus Viverrinus) during a conservation translocation to mainland Australia. Journal of Wildlife Diseases. 56:547-559.
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2020.
Vulnerability of the British swine industry to classical swine fever. Scientific Reports. 7
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2017.
The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector. Molecular Plant-Microbe Interactions. 21:1460-1470. Abstract
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2008.
Using model-based proposals for fast parameter inference on discrete state space, continuous-time Markov processes. Journal of the Royal Society Interface. 12:ArticleNo.20150225.
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2015.
Posterior-based proposals for speeding up Markov chain Monte Carlo. Royal Society Open Science. 6:ArticleNo.190619.
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2019.
Tracing the ancestry of modern bread wheats. Nature Genetics. 51:905-911.
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2019.
Early responses of Brassica oleracea roots to zinc supply under sufficient and sub-optimal phosphorus supply. Frontiers in Plant Science. 10:ArticleNo.1645.
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2020.
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2016.
Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. 434:151-165.
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2019.
Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. Published online..
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2018.
Composition of mineral elements and bioactive compounds in tartary buckwheat and wheat sprouts as affected by natural mineral-rich water. Journal of Cereal Science. 69:9-16.
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2016.
Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross. Crop Science. 52:2469-2480.
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2012.
Quantifying and mitigating wind-induced undercatch in rainfall measurements. Water Resources Research. 54:3863-3875.
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2018.
Fugacity modelling to predict the distribution of organic contaminants in the soil: oil matrix of constructed biopiles. Chemosphere. 71(8):1432-1439.
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2008.
Exposure assessment of carcass disposal options in the event of a notifiable exotic animal disease: application to avian influenza virus. Environmental Science and Technology. 42(9):3145.
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2008.
Using the ODD protocol for comparing three agent-based social simulation models of land use change. Journal of Artificial Societies and Social Simulation. 11(2):3.
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2008.
Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
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2016.
Using qualitative evidence to enhance an agent-based modelling system for studying land use change. Journal of Artificial Societies and Social Simulation.. 13(2)
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2010.
A semantic grid service for experimentation with an agent-based model of land use change. Journal of Artificial Societies and Social Simulation.. 10(2):2.
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2007.
Nonlinearities in biodiversity incentive schemes: A study using an integrated agent-based and metacommunity model. Environmental Modelling and Software. 45:74-91.
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2013.
ODD updated. Journal of Artificial Societies and Social Simulation.. 13(4):9.
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2010.
Open access for social simulation. Journal of Artificial Societies and Social Simulation. 10(3):10.
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2007.
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2019.
Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
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2016.
Extracting OWL ontologies from agent-based models: a netlogo extension. Journal of Artificial Societies and Social Simulation. 18:15.
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2015.
What every agent-based modeller should know about floating point arithmetic. Environmental Modelling and Software. 21(3):283-309.
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2006.
Using agent-based models for prediction in complex and wicked systems. Journal of Artificial Societies and Soicial Simulation. 24:ArticleNo.2.
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2021.
Special issue: agent-based modelling of land use effects on ecosystem processes and services. Journal of Land Use Science. 6:75-81.
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2011.
Preface to the thematic issue on modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:317.
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2016.
Ontologies for transparent integrated human-natural system modelling. Landscape Ecology. 24(9):1255-1267.
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2009.
Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
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2009.
Using multistage design-based methods to construct abundance indices and uncertainty measures for delta smelt. Transactions of the American Fisheries Society. 148:710-724.
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2019.
In vitro life cycle of Heterodera sacchari on pluronic gel. Nematology. 21:573-579.
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2019.
Signatures of adaptation to a monocot host in the plant-parasitic cyst nematode Heterodera sacchari. Plant Journal. 103:1263-1274.
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2020.
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2018.
Citizen science evidence from the past century shows that Scottish rivers are warming. Science of the Total Environment. 659:53-65.
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2019.
Management influences on stream-flow variability in the past and under potential climate change in a Central European mining region. Water Resources Management. 33:5191-5206.
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2019.
Influence of pit removal methods on river network position. Hydrological Processes. 26:1984-1990.
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2012.
Sequence-based mapping approach to spatio-temporal snow patterns from MODIS time-series applied to Scotland. International Journal of Applied Earth Observation and Geoinformation. 34:122-135.
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2015.
Legacy data for 3D modelling of peat properties with uncertainty estimation in Dava bog - Scotland.using legacy data. Geoderma Regional. 22:ArticleNo.e00288.
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2020.
A GIS-based human health risk assessment for urban green space planning -- An example from Grugliasco (Italy). The Science of the Total Environment. 407(23):5961-5970.
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2009.
Introducing a method of human health risk evaluation for planning and soil quality management of heavy metal-polluted soils - An example from Grugliasco (Italy). Landscape and Urban Planning. 88(2-4):64-72.
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2008.
A probabilistic approach to river network detection in digital elevation models. Catena. 87:341-350.
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2011.
Spatio-temporal MODIS EVI gap filling under cloud cover: an example in Scotland. ISPRS Journal of Photogrammetry and Remote Sensing. 72:56-72.
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2012.
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2016.
Assimilation of optical and radar remote sensing data in 3D mapping of soil properties over large areas. Science of the Total Environment.
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2017.
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2013.
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2010.
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2014.
Enhancing the WorldClim data set for national and regional applications. Science of the Total Environment. 625:1628-1643.
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2018.
Modelling high resolution RS data with the aid of coarse resolution data and ancillary data. International Journal of Applied Earth Observations and Geoinformation. 23:360-371.
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2013.
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2019.
Downscaling and correction of regional climate models outputs with a hybrid geostatistical approach. Spatial statistics. 14:4-21.
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2015.
Site-directed nucleases, a paradigm shift in predictable, knowledge-based plant breeding. Trends in Biotechnology. 31:373-383.
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2013.
Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
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2012.
Effects of polychlorinated biphenyls in CD-1 mice: reproductive toxicity and intergenerational transmission. Toxicological Sciences. 126:213-226.
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2012.
Buffering effects of seed banks on plant community diversity in response to land use and climate. Global Ecology and Biogeography. 30:128-139.
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2021.
The role of cultural ecosystem services in landscape management and planning. Current Opinion in Environmental Sustainability. 14:28-33.
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2015.
Novel Cupriavidus strains isolated from root nodules of native Uruguayan Mimosa species. Applied and Environmental Microbiology. 82:3150-3164.
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2016.
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2008.
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2015.
Soil characteristics determine the rhizobia in association with different species of Mimosa in central Brazil. Plant and Soil. 423:411-428.
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2018.
Problems of farm succession in the post-Soviet space: insights from the Republic of Moldova. Journal of Land Use Science. 13:631-644.
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2019.
Post-Soviet smallholders between entrepreneurial farming and diversification. Livelihood pathways in rural Moldova. Journal of Rural Studies. 82:315-327.
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2021.
From social interactions to private environmental behaviours: The case of consumer food waste. Resources, Conservation and Recycling.. 176
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2021.
From social interactions to private environmental behaviours: The case of consumer food waste. Resources, Conservation and Recycling.. 176:ArticleNo.105952.
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2021.
Spatial justice on the horizon? A combined theory of change scenario tool to assess place-based interventions European Planning Studies. Published online..
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2021.
Soy expansion, environment and human development: an analysis across Brazilian municipalities. Sustainability. 13:ArticleNo.7246.
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2021.
From social interactions to private environmental behaviours: The case of consumer food waste. Resources, Conservation and Recycling.. 176
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2021.
Home-grown food and the benefits of sharing: The "intergenerational pact" in postsocialist Moldova. Journal of Agrarian Change. 20:460-484.
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2020.
Community social capital and status: The social dilemma of food waste. Ecological Economics. 183:ArticleNo.106954.
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2021.
Markov switching autoregressive models for interpreting vertical movement data with application to an endangered marine apex predator. Methods in Ecology and Evolution. 7:407-417.
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2016.
Tinkering with turbines: ethics and energy decentralisation in Scotland. Anthropological Quarterly. 91:709-748.
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2018.
Between straitjacket and possibility: Energy initiatives and the politics of regulation. Geoforum. 114:14-25.
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2020.
Urinary metabolite profiling identifies novel colonic metabolites and conjugates of phenolics in healthy volunteers. Molecular Nutrition and Food Research. 58:1414-1425.
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2014.
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2012.
Moving together: Incidental leaders and naive followers. Behavioural Processes. 83(3):225-241.
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2010.
Interactions among agricultural production and other ecosystem services delivered from European temperate grassland systems. Advances in Agronomy. 109:117-154.
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2010.
Enhancing workflow with a semantic description of scientific intent. Journal of Web Semantics. 9:222-244.
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2011.
Silver spoon effects are constrained under extreme adult environmental conditions. Ecology. 100:ArtricleNo.e02886.
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2019.
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2017.
Chemical solutions for grey water recycling. Chemosphere. 71:147-155.
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2008.
Effects of species, root branching order and season on the root traits of 13 perennial grass species. Plant and Soil. 353:47-57.
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2012.
Use of near-infrared reflectance spectroscopy to predict the percentage of dead versus living grass roots. Plant and Soil. 317(1-2):309-320.
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2008.
Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186(3):755-768.
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2010.
Spatial analysis of ectomycorrhizal fungi reveals that root tip communities are structured by competitive interactions. Molecular Ecology. 21:5110-5123.
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2012.
Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186:755-768.
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2010.
Long-term nitrogen deposition increases phosphorus limitation of bryophytes in an ombrotrophic bog. Plant Ecology. 196(1):111-121.
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2008.
Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand. Biodiversity and Conservation, 21, 2287-2298..
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2012.
Impacts of atmospheric nitrogen deposition: responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments. Global Change Biology. 18:1197-1215.
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2012.
Allowing for uncertainty in exogenous shocks to CGE models: the case of a new renewable energy sector. Economic Systems Research. 29:509-527.
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2017.
Allowing for uncertainty in exogenous shocks to CGE models: the case of a new renewable energy sector. Economic Systems Research, Published online..
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2017.
The dynamics of energy poverty: evidence from Spain. Economics of Energy and Environmental Policy. 4:153-166.
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2015.
The effect of temperature on the male and female recombination landscape of barley. New Phytologist. 208:421-429.
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2015.
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2008.
Development of a molecular cytogenetic recombination assay for barley. Cytogenetic and Genome Research. 129:154-161.
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2010.
Quantitative high resolution mapping of HvMLH3 foci in barley pachytene nuclei reveals a strong distal bias and weak interference. Journal of Experimental Botany. 64:2139-2154.
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2013.
The mitochondrial genome of Globodera ellingtonae is composed of two circles with segregated gene content and differential copy numbers. BMC Genomics. 17:ArticleNo.706..
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2016.
Car park charging in the Cairngorms National Park. Scottish Geographical Journal. 122(3):204-222.
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2008.
Is legislation a barrier to the sustainable management of game species? A case study of wild deer in Britain Journal of Environmental Planning and Management. 52(8):993-1012.
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2009.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
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2010.
Technology for older adults: maximising personal and social interaction: exploring opportunities for eHealth to support the older rural population with chronic pain. Scottish Geographical Journal. 131:181-193.
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2015.
Low income amongst the older population in Great Britain: a rural/non-rural perspective on income levels and dynamics. Regional Studies. 41(6):735-746.
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2007.
An NMRA-like protein regulates gene expression in Phytophthora capsici to drive the infection cycle on tomato. Molecular Plant-Microbe Interactions. 31:665-677.
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2018.
Intensive management in grasslands causes diffuse water pollution at the farm scale. Journal of Environmental Quality. 43:2009-2023.
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2014.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments. Rapid Communications in Mass Spectrometry. 26:2413-2421.
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2012.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments (vol 26, pg 2413, 2012). (Correction). Rapid Communications in Mass Spectrometry. 27:284.
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2013.
Spatial variation in soil properties and diffuse losses between and within grassland fields with similar short-term management. European Journal of Soil Science. 67:386-396.
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2016.
Possible consequences of the Copenhagen climate change meeting for conservation of animals. Animal Conservation. 12(6):503-504.
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2009.
Addressing gender imbalances in animal conservation. Animal Conservation. 16:131-133.
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2013.