Publications list
Filters: First Letter Of Last Name is P [Clear All Filters]
‘Not in my bin’: consumer’s understanding and concern of food waste effects and mitigating factors. Sustainability. 12:ArticleNo.5685.
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2020.
The zigzag model of plant-microbe interactions: is it time to move on? Molecular Plant Pathology. 15:865-870.
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2014.
zCompositions - R Package for multivariate imputation of left-censored data under a compositional approach. Chemometrics and Intelligent Laboratory Systems. 143:85-96.
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2015.
Y Species composition of coastal dune vegetation in Scotland has proved resistant to climate change over a third of a century. Global Change Biology. 21:3738-3747.
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2015.
Woody plant encroachment into grasslands leads to accelerated erosion of previously stable organic carbon from dryland soils. Journal of Geophysical Research-Biogeosciences. 119:2345-2357.
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2014.
Woodland networks in a changing climate: Threats from land use change. Biological Conservation. 149:93-102.
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2012.
Women and Global South strikingly under-represented among top-publishing ecologists. Conservation Letters. 14:ArticleNo.e12797.
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2021.
Within-year differences in reproductive investment in laboratory zebra finches (Taeniopygia guttata), an opportunistically breeding bird. Naturwissenschaften. 95(12):1143-1148.
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2008.
Within country targeting of agri-environment funding: a test of different methods. Global Ecology and Conservation. 17:ArticleNo.e00574.
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2019.
Wild barley serves as a source for biofortification of barley grain. Plant Science. 283:83-94.
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2019.
Why polygynous ungulates segregate in space? Testing the activity budget hypothesis in Soay sheep Ecological Monographs. 77(4):631-647.
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2007.
Why genomics research on Pectobacterium and Dickeya makes a difference. American Journal of Potato Research. 92:218-222.
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2015.
Why did filamentous plant pathogens evolve the potential to secrete hundreds of effectors to enable disease? Molecular Plant Pathology. 19:781-785.
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2018.
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2018.
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2018.
When to kill a cull: factors affecting the success of culling wildlife for disease control. Journal of the Royal society Interface. 16:ArticleNo.20180901.
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2019.
When and how to imitate your neighbours: lessons from and for FEARLUS. Journal of Artificial Societies and Social Simulation. 12(3):2.
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2009.
Wheat cultivar yield response to some organic and conventional farming conditions and the yield potential of mixtures. Journal of Agricultural Science. 155:1045-1060.
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2017.
What’s missing from legal geography and materialist studies of law? Absence and the assembling of asylum hearings in Europe Transactions of the Institute of British Geographers.
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2020.
What the "food security" agenda means for animal conservation in terrestrial ecosystems. Animal Conservation. 15:115-116.
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2012.
What is the most ecologically-meaningful metric of nitrogen deposition? Environmental Pollution. 247:319-331.
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2019.
What every agent-based modeller should know about floating point arithmetic. Environmental Modelling and Software. 21(3):283-309.
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2006.
What do we know about soil biological interactions and phosphorus acquisition in plants? Soil Biology and Biochemistry. 142
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2020.
What do we know about decision support systems for landscape and environmental management? A review and expert survey within EU research projects Environmental Modelling and Software. 98:63-74.
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2017.
What can energy research bring to social science? Reflections on 5 years of Energy Research and Social Science and beyond Energy Research and Social Science. 57:ArticleNo.101240.
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2019.
What are the impacts of social innovation? A synthetic review and case study of community forestry in the Scottish Highlands Sustainability. 13:ArticleNo.4359.
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2021.
Weighted logrank permutation tests for randomly right censored life science data. Scandinavian Journal of Statistics. 41:742-761.
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2014.
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2015.
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2020.
Wear fast, die young: more worn teeth and shorter lives in Iberian compared to Scottish red deer. PLoS ONE. 10:e0134788.
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2015.
The Weaklaw Vent, SE Scotland: Metasomatism of eruptive products by carbo-hydro-fluids of probable mantle origin. Mineralogical Magazine. 83:855-867.
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2019.
The weaker sex? The propensity for male-biased piglet mortality PLoS ONE. 7:e30318.
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2012.
Weak and variable relationships between environmental severity and small-scale co-occurrence in alpine plant communities. Journal of Ecology. 95(6):1284-1295.
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2007.
Water safety plan enhancements with improved drinking water quality detection techniques. Science of the Total Environment. 698:ArticleNo.134185.
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2020.
Water for all: towards an integrated approach to wetland conservation and flood risk reduction in a lowland catchment in Scotland. Journal of Environmental Management. 246:881-896.
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2019.
The water energy food nexus - challenges and emerging solutions. Environmental Science: Water Research and Technology. 1:15-16.
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2015.
Water balance dynamics during ten years of ecological development at ChickenCreek catchment. Vadose Zone Journal. 16:1-14.
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2017.
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2006.
Vulnerability of the British swine industry to classical swine fever. Scientific Reports. 7
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2017.
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2008.
Viruses and virus diseases of Rubus. Plant Disease. 97:168-182.
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2013.
A view not to be missed: Salient scene content interferes with cognitive restoration. PLoS ONE. 12:e0169997.
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2017.
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2009.
Variation in hydrogen isotope composition among salt marsh plant organic compounds highlights biochemical mechanisms controlling biosynthetic fractionation. Journal of Geophysical Research - Biogeosciences. 123:2645-2660.
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2018.
Variation in acrylamide producing potential in potato: Segregation of the trait in a breeding population. Food Chemistry. 123:568-573.
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2010.
Variable extent of sex-biased dispersal in a strongly polygynous mammal. Molecular Ecology. 19(15):3101-3113.
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2010.
Variable extent of hybridization between invasive sika (Cervus nippon) and native red deer (C-elaphus) in a small geographical area. Molecular Ecology. 18(5):862-876.
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2009.
Variability in functional traits mediates plant interactions along stress gradients. Journal of Ecology. 101:753-762.
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2013.
Values below detection limit in compositional chemical data. Analytica Chimica Acta. 764:32-43.
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2013.
Valley width controls on riffle location and persistence on a gravel bed river. Geomorphology. 121(3-4):206-221.
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2010.
Utilizing low-cost natural waste for the removal of pharmaceuticals from water: Mechanisms, isotherms and kinetics at low concentrations. Journal of Cleaner Production. 227:88-97.
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2019.
Using the ODD protocol for comparing three agent-based social simulation models of land use change. Journal of Artificial Societies and Social Simulation. 11(2):3.
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2008.
Using Tablet for visual exploration of second generation sequencing data. Briefings in Bioinformatics. 14:193-202.
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2013.
Using species records and ecological attributes of bryophytes to develop an ecosystem health indicator. Ecological Indicators. 104:127-136.
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2019.
Using qualitative evidence to enhance an agent-based modelling system for studying land use change. Journal of Artificial Societies and Social Simulation.. 13(2)
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2010.
Using plant functional traits as a link between land use and bee foraging abundance. Acta Oecologia. 50:32-39.
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2013.
Using multistage design-based methods to construct abundance indices and uncertainty measures for delta smelt. Transactions of the American Fisheries Society. 148:710-724.
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2019.
Using model-based proposals for fast parameter inference on discrete state space, continuous-time Markov processes. Journal of the Royal Society Interface. 12:ArticleNo.20150225.
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2015.
Using mental models to understand soil management. Soil Use and Management.
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2016.
Using mental models to understand soil management. Soil Use and Management. 32:36-44.
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2016.
Using compositional and functional indicators for biodiversity conservation monitoring of semi-natural grasslands in Scotland. Biological Conservation. 175:82-93.
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2014.
Using agent-based models for prediction in complex and wicked systems. Journal of Artificial Societies and Soicial Simulation. 24:ArticleNo.2.
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2021.
Use of simple rainfall-runoff models as a baseline for the benchmarking of the hydrological component of complex catchment models. Archiv fur Hydrobiologie. Large Rivers Supplement.. 17(102):75-96.
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2006.
Use of quantitative molecular diagnostic assays to investigate Fusarium dry rot in potato stocks and soil. Phytopathology. 95:1462-1471. Abstract
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2005.
Use of near-infrared reflectance spectroscopy to predict the percentage of dead versus living grass roots. Plant and Soil. 317(1-2):309-320.
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2008.
Urinary metabolite profiling identifies novel colonic metabolites and conjugates of phenolics in healthy volunteers. Molecular Nutrition and Food Research. 58:1414-1425.
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2014.
Urban geochemistry: research strategies to assist risk assessment and remediation of brownfield sites in urban areas. Environmental Geochemistry and Health. 30:565-576.
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2008.
Uranium phosphate biomineralization by fungi. Environmental Microbiology. 17:2064-2075.
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2015.
Unravelling complexity in inter-species interaction through nonlinear dynamical models. Acta Ethologica. 16:21-30.
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2013.
Unpredictable assembly of arbuscular mycorrhizal fungal communities. Pedobiologia. 59:11-15.
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2016.
Unpacking the people - biodiversity paradox: a conceptual framework. Bioscience. 66:576-583.
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2016.
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research. 47:D259-D264.
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2019.
The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.
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2010.
A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics. 8:973-982. Abstract
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2007.
The unfolded protein response and programmed cell death are induced by expression of garlic virus X p11 in Nicotiana benthamiana. Journal of General Virology. 97:1462-1468.
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2016.
Unearthing the picturesque: the validity of the preference matrix as a measure of landscape aesthetics. Landscape and Urban Planning. 124:1-13.
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2014.
Understorey plant community composition reflects invasion history decades after invasive Rhododendron has been removed. Journal of Applied Ecology. 55:874-884.
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2018.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments (vol 26, pg 2413, 2012). (Correction). Rapid Communications in Mass Spectrometry. 27:284.
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2013.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments. Rapid Communications in Mass Spectrometry. 26:2413-2421.
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2012.
Understanding social innovation for the well-being of forest-dependent communities: a preliminary theoretical framework. Forest Policy and Economics. 97:163-174.
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2018.
Understanding H-2/H-1 systematics of leaf wax n-alkanes in coastal plants at Stiffkey saltmarsh, Norfolk, UK. Geochimica et Cosmochimica Acta.. 128:13-28.
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2014.
Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack. Ecology Letters. 16:835-843.
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2013.
Underground allies: how and why do mycelial networks help plants defend themselves? BioEssays. 36:21-26.
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2014.
Uncovering mechanisms behind mosquito seasonality by integrating mathematical models and daily empirical population data: Culex pipiens in the UK. Parasites and Vectors. 12:ArticleNo.74.
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2019.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
UK food and nutrition security during and after the COVID-19 pandemic. Nutrition Bulletin. 46:88-97.
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2021.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
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2010.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
Two lowland stream riffles - linkages between physical habitats and macroinvertebrates across multiple spatial scales. Aquatic Ecology. 41(3):475-490.
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2007.
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2022.
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
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2010.
Twenty three unsolved problems in hydrology (UPH) - a community perspective. Hydrological Sciences Journal.. 64:1141-1158.
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2019.
TRY plant trait database - enhanced coverage and open access. Global Change Biology. 26:119-188.
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2020.
The tribunal atmosphere: On qualitative barriers to access to justice. Geoforum. 119:61-71.
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2021.
Trend analysis for integrated regional climate change impact assessments in the Lusatian river catchments (north-eastern Germany). Regional Environmental Change. 17:1751-1762.
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2017.
Treatment of organic resources before soil incorporation in semi-arid regions improves resilience to El Nino, and increases crop production and economic returns. Environmental Research Letters. 14:ArticleNo.085004.
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2019.
Transmission of pro-environmental norms in large organizations. Sustainable Production and Consumption. 19:25-32.
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2019.
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2007.
Transition to density dependence in a reintroduced ecosystem engineer. Biodiversity and Conservation. 28:3803-3830.
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2019.
Transient and asymptotic dynamics of reinforcement learning in games. Games and Economic Behavior. 61(2):259-276.
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2007.
Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
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2012.
Transformation of vanadinite (Pb5(VO4)3Cl) by fungi. Environmental Microbiology. Published online..
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2014.
A transdisciplinary approach to the economic analysis of the European Water Framework Directive. Ecological Economics. 116:34-45.
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2015.
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2017.
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2014.
The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
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2009.
Transcriptional response of Pseudomonas aeruginosa to a phosphate-deficient Lolium perenne rhizosphere. Plant and Soil. 359:25-44.
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2012.
Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
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2009.
Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.
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2020.
A trait-based approach to crop-weed interactions. European Journal of Agronomy. 70:22-32.
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2015.
Trait assembly in plant assemblages and its modulation by productivity and disturance. Oecologia. 167:209-218.
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2011.
Trafficking arms: oomycete effectors enter host plant cells. Trends in Microbiology. 14:8-11. Abstract
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2006.
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2016.
Tracking (poly)phenol components from raspberries in ileal fluid. Journal of Agricultural and Food Chemistry. 62:7631-7641.
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2014.
Tracing the ancestry of modern bread wheats. Nature Genetics. 51:905-911.
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2019.
Tracing N, K, Mg and Ca released from decomposing biomass to new tree growth. Part II: A model system simulating root decomposition on clearfell sites. Biomass and Bioenergy. 30(12):1060-1066.
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2006.
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2006.
Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
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2009.
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2008.
Towards genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles. G3 Genes, Genomes, Genetics. 11:ArticleNo.jkaa058.
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2021.
Towards a microbial process-based understanding of the resilience of peatland ecosystem service provisioning - a research agenda. Science of The Total Environment. 759:ArticleNo.143467.
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2020.
Towards a method of evaluating social innovation in forest-dependent communities: Firsy suggestions from a a science-stakeholder collaboration. Forest Policy and Economics. 104:9-22.
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2019.
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2019.
Top 10 plant parasitic nematodes in molecular plant pathology. Molecular Plant Pathology. 14:946-961.
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2013.
The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.
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2015.
Too much of a good thing? Using a spatial agent-based model of transport to evaluate workplace sharing programs in Aberdeen Journal of Transport Geography. 69:83-97.
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2018.
Tissue-dependent limited pleiotropy affects gene expression in barley. Plant Journal. 56:287-296.
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2008.
Tiny niches and translocations: the challenge of identifying suitable recipient sites for small and immobile species. Journal of Applied Ecology. 55:621-630.
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2018.
Tinkering with turbines: ethics and energy decentralisation in Scotland. Anthropological Quarterly. 91:709-748.
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2018.
Through the eye of the needle: A review of isotope approaches to quantify processes mediating soil carbon balance. New Phytologist. 184:19-33.
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2009.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
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2009.
Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
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2012.
Thermophilic versus mesophilic dark fermentation in xylose-fed fluidised bed reactors: Biohydrogen production and active microbial community. International Journal of Hydrogen Energy. 43:5473-5485.
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2018.
Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
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2009.
TetraploidSNPMap: Software for linkage analysis and QTL mapping in autotetraploid populations using SNP dosage data. Journal of Heredity. 108:438-442.
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2017.
Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment. New Phytologist. 196:101-109.
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2012.
Testing scenarios to achieve workplace sustainability goals using backcasting nad agent-based modeling. Environment and Behavior. 49:1007-1037.
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2017.
Terrestrial nitrogen cycling in earth system models revisited. New Phytologist. 210:1165-1168.
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2016.
Tensile fracture properties of seven tropical grass species at different phenological stages. Grass and Forage Science. 66:551-559.
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2011.
Temporal variation in the sediment permeability of an intertidal sandflat. Marine Ecology Progress Series. 441:49-63.
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2011.
Temporal variability in domestic point source discharges and their associated impact on receiving waters. Science of the Total Environment. 571:1275-1283.
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2016.
Temporal responses of propagule banks during ecological restoration in the UK. Restoration Ecology. 15(1):103-117.
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2007.
Temporal dynamism of resource capture: a missing factor in ecology? Trends in Ecology and Evolution. 33:277-286.
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2018.
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2009.
Temperature sensitivity of substrate-use efficiency can result from altered microbial physiology without change to community composition. Soil Biology and Biochemistry. 109:59-69.
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2017.
Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.
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2011.
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2015.
Temperate airborne grass pollen defined by spatio-temporal shifts in community composition. Nature Ecology and Evolution. 3:750-754.
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2019.
Tecnicas composicionales para concentraciones geoquimicas por debajo del limite de deteccion. Boletin Instituto Geologico y Minero de Espana. 122:459-468.
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2011.
Technology for older adults: maximising personal and social interaction: exploring opportunities for eHealth to support the older rural population with chronic pain. Scottish Geographical Journal. 131:181-193.
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2015.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.
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2010.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26:328-336.
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2011.
Tackling the challenge of interdisciplinary energy research: A research toolkit. Energy Research and Social Sciences. 74:ArticleNo.101966.
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2021.
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2011.
Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
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2012.
A systematic review of methods for studying the impacts of outdoor recreation on terrestrial wildlife. Global Ecology and Conservation. 22:ArticleNo.e00917.
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2022.
A synthetic system for expression of components of a bacterial microcompartment. Microbiology-SGM. 159:2427-2436.
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2013.
The synaptonemal complex protein ZYP1 is required for imposition of meiotic crossovers in barley. The Plant Cell. 26:729-740.
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2014.
Symptom induction and RNA silencing suppression by the cucumber mosaic virus 2b protein. Plant Signaling & Behaviour. 5:705-708.
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2010.
Symplastic connection is required for bud outgrowth following dormancy in potato (Solanum tuberosum L.) tubers. Plant, Cell and Environment. 30:973-983. Abstract
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2007.
Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. ISME Journal. 8:1336-1345.
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2013.
Sustainable use of organic resources for bioenergy, food and water provision in rural Sub-Saharan Africa. Renewable and Sustainable Energy Reviews. 50:903-917.
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2015.
Sustainable management of the Southern root-knot nematode, Meloidogyne incognita (Kofoid and White) Chitwood, by means of amendments of Fumaria parviflora. International Journal of Agriculture and Biology. 17:289-296.
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2015.
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2009.
Sustainable governance of natural resources and institutional change - an analytical framework. Public Administration and Development. 27(2):123-137.
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2007.
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2021.
A surface loop of the potato leafroll virus coat protein is involved in virion assembly, systemic movement and aphid transmission.. Journal of Virology. 79:1207-1214. Abstract
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2005.
Surface coat proteins of the potato cyst nematode, Globodera rostochiensis. Nematology. 23:113-123.
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2021.
Supporting the role of small farms in the European regional food systems: What role for the science-policy interface? Global Food Security. 28:ArticleNo.100433.
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2021.
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2021.
Substrate requirements of spawning Chinook salmon (Oncorhynchus tshawytscha) are dependent on local channel hydraulics. River Research and Applications. 26(4):456-468.
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2010.
Subcellular distribution of mutant movement proteins of Cucumber mosaic virus fused to green fluorescent proteins. Journal of General Virology. 86:1223-1228. Abstract
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2005.
The sub-cellular localisation of the potato (Solanum tuberosum L.) carotenoid biosynthetic enzymes, CrtRb2 and PSY2. Protoplasma. 250:1381-1392.
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2013.
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2013.
Striking a balance between in-person care and the deployment of eHealth to support the older rural population with chronic pain. International Journal of Qualitative Studies on Health and Well-Being. 10
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2015.
Straw amendment to paddy soil stimulates denitrification but biochar amendment promotes anaerobic ammonia oxidation. Journal of Soils and Sediments..
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2017.
Straw amendment to paddy soil stimulates denitrification but biochar amendment promotes anaerobic ammonia oxidation. Journal of Soils and Sediments. 17:2428-2437.
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2017.
Strategies and methods for studying the rhizosphere - the plant science toolbox. Plant and SoilPlant and Soil. 321:431-456.
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2009.
Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
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2010.
Stochastic modelling of ecological processes using hybrid Gibbs samplers. Ecological Modelling. 198(1-2):40-52.
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2006.
Stitching organelles: organization and function of specialized membrane contact sites in plants. Trends in Cell Biology. 26:705-717.
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2016.
Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.
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2011.
Status and prospects of plant virus control through interference with vector transmission. Annual Review of Phytopathology, 51,177-201.. 51:177-201.
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2013.
Statistical models to evaluate invertebrate-plant trophic interactions in arable systems. Bulletin of Entomological Research. 97:265-280. Abstract
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2007.
State-space modelling of the drivers of movement behaviour in sympatric species. PLoS ONE. 10:e0142707.
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2015.
A standardized methodology to assess the effects of land use change on plant traits, communities and ecosystem functioning in grasslands. Annals of Botany. 99(5):967-985.
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2007.
Standardized and transparent model descriptionsfor agent-based models - current status and prospects. Environmental Modelling and Software. 55:156-163.
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2014.
Stakeholder attitudes to multi-functional forests in Europe. Forests, Trees and Livelihoods. 19(4):341-358.
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2010.
Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
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2005.
Stable carbon isotope analysis of fluvial sediment fluxes over two contrasting C4-C3 semi-arid vegetation transitions. Rapid Communications in Mass Spectrometry. 26:2386-2392.
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2012.
Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
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2005.
Stability of recombinant plant viruses containing genes of unrelated plant viruses. Journal of General Virology. 88:1347-1355. Abstract
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2007.
Stability and variability of virulence of Phytophthora infestans assessed in a ring test across European laboratories. Plant Pathology. 60:556-565.
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2011.
Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus. Virus Research. 140:216-221. Abstract
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2009.
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2016.
The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112:9382-9387.
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2015.
SPICY: towards automated phenotyping of large pepper plants in the greenhouse. Functional Plant Biology. 39:870-877.
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2012.
Spectroscopic techniques applied to discriminate soils for forensic purposes. Soil Research. 58:151-160.
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2020.
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2010.