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Publications list

Found 1648 results

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2005
Fargette M, Lollier V, Phillips M, Blok VC, Frutos R.  2005.  AFLP analysis of the genetic diversity of Meloidogyne chitwoodi and M. fallax, major agricultural pests. Comptes Rendus Biologies. 328:455-462. Abstract
Scotti I, Burelli A, Cattonaro F, Chagne D, Fuller J, Hedley PE, Jansson G, Lalanne C, Madur D, Neale D et al..  2005.  Analysis of the distribution of marker classes in a genetic linkage map: A case study in Norway Spruce (Picea.abies Karst). Tree Genetics and Genomes. 1:93-102. Abstract
Armstrong MR, Whisson SC, Pritchard L, Bos JIB, Venter E, Avrova AO, Rehmany AP, B U, Brooks K, Cherevach I et al..  2005.  An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognised in the host cytoplasm. Proceedings of the National Academy of Sciences, USA. 102:7766-7771. Abstract
Fenton B, Malloch G, Woodford JAT, Foster SP, Anstead J, Denholm I, King L, Pickup J.  2005.  The attack of the clones: tracking the movement of insecticide-resistant peach-potato aphids Myzus persicae (Hemiptera: Aphididae). Bulletin of Entomological Research. 95:483-494. Abstract
Griffiths BS, Hallett PD, Kuan HL, Pitkin Y, Aitken MN.  2005.  Biological and physical resilience of soil amended with heavy metal-contaminated sewage sludge. European Journal of Soil Science. 56:197-206. Abstract
Grover SPP, McKenzie BM, Baldock JA, Papst WA.  2005.  Chemical characterisation of bog peat and dried peat of the Australian Alps. Australian Journal of Soil Research. 43:963-971. Abstract
Thomson NR, Yeats C, Bell K, Holden MTG, Bentley SD, Livingstone M, Cerde AM, Harris B, Doggett J, Ormond D et al..  2005.  The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to inter-species variation.. Genome Research. 15:629-640. Abstract
Molina-Cano J-L, Russell JR, Moralejo MA, Escacena JL, Arias G, Powell W.  2005.  Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics. 110:613-619.
Woodhead M, Russell JR, Squirrell J, Hollingsworth PM, MacKenzie K, Gibby M, Powell W.  2005.  Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Molecular Ecology. 14:1681-1695. Abstract
Choi SK, Palukaitis P, Min BE, Lee MY, Choi JK, Ryu KH.  2005.  Cucumber mosaic virus 2a polymerase and 3a movement proteins independently affect both virus movement and the timing of symptom development in zucchini squash. Journal of General Virology. 86:1213-1222. Abstract
Parr AJ, Mellon FA, Colquhoun IJ, Davies HV.  2005.  Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling. Journal of Agricultural and Food Chemistry. 53:5461-5466. Abstract
Bohan DA, Boffey CWH, Brooks DR, Clark SJ, Dewar AM, Firbank LG, Haughton AJ, Hawes C, Heard MS, May MJ et al..  2005.  Effects on weed and invertebrate abundance and diversity of herbicide management in genetically modified herbicide-tolerant winter-sown oilseed rape. Proceedings of the Royal Society of London, Series B. 272:463-474. Abstract
Whisson SC, Avrova AO, Lavrova O, Pritchard L.  2005.  Families of short interspersed elements in the genome of the oomycete plant pathogen, Phytophthora infestans. Fungal Genetics and Biology. 42:351-365. Abstract
Rangel-Castro JI, Prosser JI, Ostle N, Scrimgeour CM, Killham K, Meharg AA.  2005.  Flux and turnover of fixed carbon in soil microbial biomass of limed and un-limed plots of an upland grassland ecosystem. Environmental Microbiology. 7:544-552. Abstract
Pritchard L, Corne D, Kell D, Rowland J, Winson M.  2005.  A general model of error-prone PCR. Journal of Theoretical Biology. 234:497-509. Abstract
Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR, Powell W.  2005.  Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract
Corbett M, Virtue S, Bell K, Birch PRJ, Burr T, Hyman L, Lilley K, Poock S, Toth IK, Salmond G.  2005.  Identification of a new quorum-sensing-controlled virulence factor in Erwinia carotovora subsp. atroseptica secreted via the type II targeting pathway. Molecular Plant-Microbe Interactions. 18:334-342. Abstract
Pylypenko LA, Uehara T, Phillips MS, Sigareva DD, Blok VC.  2005.  Identification of Globodera rostochiensis and G. pallida in the Ukraine by PCR. European Journal of Plant Pathology. 111:39-46. Abstract
Brooks DR, Clark SJ, Perry JN, Bohan DA, Champion GT, Firbank LG, Haughton AJ, Hawes C, Heard MS, Woiwod IP.  2005.  Invertebrate biodiversity in maize following withdrawal of triazine herbicides. Proceedings of the Royal Society of London, Series B. 272:1497-1502. Abstract
Castelli L, Bryan GJ, Blok VC, Ramsay G, Phillips MS.  2005.  Life stage responses observed amongst fifteen wild Solanum species to resistant Globodera pallida. Nematology. 7:701-711. Abstract
Nunan N, Daniell TJ, Singh BK, Papert A, McNicol JW, Prosser JI.  2005.  Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques. Applied and Environmental Microbiology. 71:6784-6792. Abstract
Pemberton CL, Whitehead NA, Sebaihia M, Bell KS, Hyman LJ, Harris SJ, Matlin AJ, Robson ND, Birch PRJ, Carr JP et al..  2005.  Novel quorum sensing-controlled genes in Erwinia carotovora subsp. carotovora: identification of a fungal elicitor homologue in a soft-rotting bacterium. Molecular Plant-Microbe Interactions. 18:343-353. Abstract
Tzortzakakis EA, Adam MAM, Blok VC, Paraskevopoulos C, Bourtzis K.  2005.  Occurrence of resistance-breaking populations of root-knot nematodes on tomato in Greece. European Journal of Plant Pathology. 113:101-105. Abstract
Millam S, Obert B, Pret'ov A.  2005.  Plant cell and biotechnology studies in Linum usitatissimum - a review. Plant Cell, Tissue and Organ Culture. 82:93-103. Abstract
Cacciola SO, Chimento A, Pane A, Cooke DEL, Magnano di San Lio G.  2005.  Root and foot rot of Lantana caused by Phytophthora cryptogea. Plant Disease. 89:909-909. Abstract
Forbes GA, Chac MG, Kirk HG, Huarte MA, Van Damme M, Distel S, Mackay GR, Stewart HE, Lowe R, Duncan JM et al..  2005.  Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
Rangel-Castro JI, Killham K, Ostle N, Nicol GW, Anderson IC, Scrimgeour CM, Ineson P, Meharg A, Prosser JI.  2005.  Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
Lee L, Kaplan IB, Ripoll DR, Liang D, Palukaitis P, Gray SM.  2005.  A surface loop of the potato leafroll virus coat protein is involved in virion assembly, systemic movement and aphid transmission.. Journal of Virology. 79:1207-1214. Abstract
Cullen DW, Toth IK, Pitkin Y, Booham K, Walsh I, Barker I, Lees AK.  2005.  Use of quantitative molecular diagnostic assays to investigate Fusarium dry rot in potato stocks and soil. Phytopathology. 95:1462-1471. Abstract
Pendle AF, Clark GP, Boon R, Lewandowska D, Lam YW, Andersen J, Mann M, Lamond AI, Brown JWS, Shaw PJ.  2005.  Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Molecular Biology of the Cell. 16:260-269.
2006
Bacon JR, Linge KL, Parrish RR, van Vaeck L.  2006.  Atomic spectrometry update - atomic mass spectrometry. Journal of Analytical Atomic Spectrometry. 21(8):785-818.
Hutchins M, Urama K, Penning E, Icke J, Dilks C, Bakken T, Perrin C, Saloranta T, Candela L.  2006.  The BMW model evaluation tool: a guidance document. Archiv fur Hydrologie: Large Rivers Supplement. 17:23-48.
Graham MC, Farmer JG, Anderson P, Paterson E, Hillier SJ, Lumsdon DG, Bewley RJF.  2006.  Calcium polysulfide remediation of hexavalent chromium from chromite ore processing residue. The Science of the Total Environment. 364(1-3):32-44.
Beale CM, Burfield IJ, Sim IMW, Rebecca GW, Pearce-Higgins JW, Grant MC.  2006.  Climate change may account for the decline in British ring ouzels Turdus torquatus. Journal of Animal Ecology. 75(3):826-835.
Urama KC, Penning WWE, Kamari J.  2006.  Cost-effectiveness analysis and the implementation of the WFD: review of available approaches and the role of model benchmarking. Archiv fur Hydrobiology: Large Rivers Supplement. 17:201-219.
Macdonald LM, Paterson E, Dawson LA, McDonald AJS.  2006.  Defoliation and fertiliser influences on the soil microbial community associated with two contrasting Lolium perenne cultivars. Soil Biology and Biochemistry. 38(4):674-682.
Michalet R, Brooker RW, Cavieres LA, Zikvidze Z, Lortie CJ, Pugnaire FI, Valiente-Banuet A, Callaway RM.  2006.  Do biotic interactions shape both sides of the humped-back model of species richness in plant communities? Ecology Letters. 9(7):767-773.
Patra AK, Abbadie L, Clays-Josserand A, Degrange V, Grayston SJ, Guillaumaud N, Loiseau P, Louault F, Mahmood S, Nazaret S et al..  2006.  Effects of management regime and plant species on the enzyme activity and genetic structure of N-fixing, denitrifying and nitrifying bacterial communities in grassland soils. Environmental Microbiology. 8(6):1005-1016.
Lea RG, Pinto de Andrade L, Rae MT, Hannah LT, Kyle CE, Murray JF, Rhind SM, Miller DW.  2006.  Effects of maternal undernutrition during early pregnancy on apoptosis regulators in the ovine fetal ovary. Reproduction. 131(1):113-124.
Ghorbani J, McAllister HA, Pakeman RJ, Marrs RH, Le Duc MG.  2006.  Effects of the litter layer of Pteridium aquilinum on seed under experimental restoration. Applied Vegetation Science. 9(1):127-136.
Thwaites RH, Ashmore MR, Morton AJ, Pakeman RJ.  2006.  The effects of tropospheric ozone on the species dynamics of calcareous grassland. Environmental Pollution. 144(2):500-509.
Porteous Moore F, Barac B, Borremans B, Oeyen L, Campbell CD, Vangronsveld J, van der Lelie D, Moore ERB.  2006.  Endophytic bacterial diversity in poplar trees growing on a btex-contaminated site: the characterisation of isolates with potential to enhance phytoremediation. Systematic and Applied Microbiology. 29(7):539-556.
Shafi S, Sweetman A, Hough RL, Smith R, Rosevear A, Pollard SJT.  2006.  Evaluating fugacity models for trace components in landfill gas. Environmental Pollution. 144:1013-1023.
Evans CD, Reynolds B, Jenkins A, Helliwell RC, Curtis CJ, Goodale CL, Ferrier RC, Emmett BA, Pilkington M, Caporn SJM et al..  2006.  Evidence that soil carbon pool determines susceptibility of semi-natural ecosystems to elevated nitrogen leaching. Ecosystems. 9(3):453-462.
Pakeman RJ, Beaton JK, Thoss V, Lennon JJ, Campbell CD, White D, Iason GR.  2006.  The extended phenotype of Scots pine (Pinus sylvestris) structures the understorey assemblage. Ecography. 29(3):451-457.
Littlewood NA, Pakeman RJ, Woodin SJ.  2006.  A field assessment of the success of moorland restoration in the rehabilitation of whole plant assemblages. Applied Vegetation Science. 9(2):295-306.
Vinten AJA, Donnelly S, Ball BC, Brewster J, Crawford CE, Ritchie RM, Parker JP.  2006.  A field trial to evaluate the pollution potential to ground and surface waters from woodchip corrals for overwintering livestock outdoors. Soil Use and Management. 22(1):82-94.
Kent M, Moyeed RA, Reid CL, Pakeman RJ, Weaver R.  2006.  Geostatistics, spatial rate of change analysis and boundary detection in plant ecology and biogeography. Progress in Physical Geography. 30(2):201-231.
Lin H, Bouma J, Pachepsky Y, Western A, Thompson J, van Genuchten TM, Vogel HJ, Lilly A.  2006.  Hydropedology: synergistic integration of pedology and hydrology. Water Resources Research. 42(5):W05301.
Horswell J, Weitz HJ, Percival HJ, Speir TW.  2006.  Impact of heavy metal amended sewage sludge on forest soils as assessed by bacterial and fungal biosensors. Biology and Fertility of Soils. 42(6):569-576.
McNamara NP, Chamerlain PM, Pierce TG, Sleep D, Black HIJ, Reay DS, Ineson P.  2006.  Impact of water table depth on forest soil methane turnover in laboratory soil cores deduced from natural abundance and tracer 13C stable isotope experiments. Isotopes in Environmental and Health Studies. 42(4):379-390.
Farmer JE, Paterson E, Bewley RJF, Geelhoed JS, Hillier S, Meeussen JCL, Lumsdon DG, Thomas RP, Graham MC.  2006.  The implications of integrated assessment and modelling studies for the future remediation of chromite ore processing residue disposal sites. The Science of the Total Environment. 360(1-3):90-97.
Weatherall A, Proe MF, Craig J, Cameron AD, Midwood AJ.  2006.  Internal cycling of nitrogen, potassium and magnesium in young Sitka spruce. Tree Physiology. 26:673-680.
Singh BK, Munro S, Reid E, Ord B, Potts JM, Paterson E, Millard P.  2006.  Investigating microbial community structure in soils by physiological, biochemical and molecular fingerprinting methods. European Journal of Soil Science. 57:72-82.
Izquierdo LR, Polhill JG.  2006.  Is your model susceptible to floating-point errors? Journal of Artificial Societies and Social Simulation. 9(4):4.
Dawson JJC, Campbell CD, Towers W, Cameron CM, Paton GI.  2006.  Linking biosensor responses to Cd, Cu and Zn partitioning in soils. Environmental Pollution. 142(3):493-500.
Evans DM, Redpath SM, Evans SA, Elston DA, Gardner CJ, Dennis P, Pakeman RJ.  2006.  Low intensity, mixed livestock grazing improves the breeding abundance of a common insectivorous passerine. Biology Letters. 2(4):636-638.
Irvine RJ, Corbishley H, Pilkington JG, Albon SD.  2006.  Low level parasitic worm burdens reduce body condition in free ranging red deer (Cervus elaphus). Parasitology. 133(4):465-475.
Yuangen Y, Campbell CD, Clark L, Cameron CM, Paterson E.  2006.  Microbial indicators of heavy metal contamination in urban and rural soils. Chemosphere. 63(11):1942-1952.
Wright RF, Aherne J, Bishop K, Camarero L, Cosby BJ, Erlandsson M, Evans CD, Forsius M, Hardekopf H, Helliwell RC et al..  2006.  Modelling the effect of climate change on recovery of acidified freshwaters: relative sensitivity of individual processes in the MAGIC model. The Science of the Total Environment. 365(1-3):154-166.
Littlewood NA, Dennis P, Pakeman RJ, Woodin SJ.  2006.  Moorland restoration aids the reassembly of associated phytophagous insects. Biological Conservation. 132(3):395-404.
Kok K, Patel M, Rothman DS, Quaranta G.  2006.  Multi-scale narratives from an IA perspective: Part II. Participatory local scenario development. Futures. 38(3):285-311.
Robertson E, Gordon IJ, Perez-Barberia FJ.  2006.  Preferences of sheep and goats for straw pellets treated with different food-flavouring agents. Small Ruminant Research. 63(1-2):50-57.
Kamari J, Boorman D, Icke J, Perrin C, Candela L, Elorza FJ, Ferrier RC, Bakken TH, Hutchins M.  2006.  Process for benchmarking models: dialogue between water managers and modellers. Archiv fur Hydrologie, Large Rivers Supplement. 17(1-2):3-21.
Littlewood NA, Pakeman RJ, Woodin SJ.  2006.  The response of plant and insect assemblages to the loss of Calluna vulgaris from upland vegetation. Biological Conservation. 128(3):335-345.
Paterson E, Sim A, Standing D, Dorward M, McDonald AJS.  2006.  Root exudation from Hordeum vulgare in response to localised nitrate supply. Journal of Experimental Botany. 57(10):2413-2420.
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser J, Wheateley R, McNicol J, Millard P.  2006.  Sheep urine deposition is a source of heterogeneity in upland grassland soil microbial community structure. FEMS Microbiology Ecology. 56(2):310-320.
Walker DM, Perez-Barberia FJ, Marion G.  2006.  Stochastic modelling of ecological processes using hybrid Gibbs samplers. Ecological Modelling. 198(1-2):40-52.
Weatherall A, Craig J, Cameron AD, McKay HM, Proe MF, Midwood AJ.  2006.  Tracing N, K, Mg and Ca released from decomposing biomass to new tree growth. Part II: A model system simulating root decomposition on clearfell sites. Biomass and Bioenergy. 30(12):1060-1066.
Perrin C, Dilks C, Barlund I, Payan JL, Andreassian V.  2006.  Use of simple rainfall-runoff models as a baseline for the benchmarking of the hydrological component of complex catchment models. Archiv fur Hydrobiologie. Large Rivers Supplement.. 17(102):75-96.
Beale CM, Dodd S, Pearce-Higgins JW.  2006.  Wader recruitment indices suggest nesting success is temperature-dependent in Dunlin. Ibis. 148:406-410.
Polhill JG, Izquierdo LR, Gotts NM.  2006.  What every agent-based modeller should know about floating point arithmetic. Environmental Modelling and Software. 21(3):283-309.
Toth IK, Pritchard L, Birch PRJ.  2006.  Comparative genomics reveals what makes an enterobacterial plant pathogen. Annual Review of Phytopathology. 44:305-336. Abstract
Heckmann L, Griffiths BS, Caul S, Thompson J, Pusztai-Carey M, Moar, W.J, Andersen MN, Krogh PH.  2006.  Consequences for Protaphorura armata (Collembola: Onychiuridae) following exposure to genetically modified Bacillus thuringiensis (Bt) maize and non-Bt maize. Environmental Pollution. 142:212-216. Abstract
Krivtsov V, Bezginova T, Salmond R, Liddell K, Garside A, Thompson J, Palfreyman JW, Staines HJ, Brendler A, Griffiths BS et al..  2006.  Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland. Forestry. 79:201-216. Abstract
Krivtsov V, Garside A, Bezginova T, Thompson J, Palfreyman JW, Salmond R, Liddell K, Brendler A, Griffiths BS, Watling R et al..  2006.  Ecological study of the forest litter meiofauna of a unique Scottish woodland. Animal Biology. 56:69-93. Abstract
Firbank LG, Rothery P, May MJ, Clark SJ, Scott RJ, R.C. S, Boffey CWH, Brooks DR, Champion GT, Haughton AJ et al..  2006.  Effects of genetically modified herbicide-tolerant cropping systems on weed seedbanks in two years of following crops. Biology Letters. 2:140-143. Abstract
Heard MS, Clark SJ, Rothery P, Perry JN, Bohan DA, Brooks DR, Champion GT, Dewar AM, Hawes C, Haughton AJ et al..  2006.  Effects of successive seasons of genetically modified herbicide-tolerant maize cropping on weeds and invertebrates. Annals of Applied Biology. 149:249-254. Abstract
Caldwell KS, Russell JR, Langridge P, Powell W.  2006.  Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics. 172:557-567. Abstract
Cacciola SO, Pane A, Cooke DEL, Raudino F, Magnano di San Lio G.  2006.  First report of brown rot and wilt of fennel caused by Phytophthora megasperma in Italy. Plant Disease. 90:-110. Abstract
Pritchard L, White JA, Birch PRJ, Toth IK.  2006.  GenomeDiagram: A python package for the visualisation of large-scale genomic data. Bioinformatics. 22:616-617. Abstract
Blok VC, Chapman S, Armstrong MR, Phillips M, Lilley C, Urwin P, Blanchard A, Grenier E, Jones JT.  2006.  Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
Ford KE, Gregory PJ, Gooding MJ, Pepler S.  2006.  Genotype and fungicide effects on late-season root growth of winter wheat.. Plant and Soil. 284:33-44. Abstract
Muehlbauer GJ, Bhau BS, Syed NH, Heinen S, Cho S, Marshall DF, Pateyron S, Buisine N, Chalhoub B, Flavell AJ.  2006.  A hAT superfamily tranposase recruited by the cereal grass genome. Molecular Genetics and Genomics. 275:553-563. Abstract
Castelli L, Bryan GJ, Blok VC, Ramsay G, Sobczak M, Gillespie T, Phillips MS.  2006.  Investigations of Globodera pallida invasion and syncytia formation within roots of the susceptible potato cultivar D. Nematology. 8:103-110. Abstract
Malloch G, Highet F, Kasprowicz L, Pickup J, Neilson R, Fenton B.  2006.  Microsatellite marker analysis of peach-potato aphids (Myzus persicae, Homoptera: Aphididae) from Scottish suction traps. Bulletin of Entomological Research. 96:573-582. Abstract
Torrance L, Ziegler A, Pittman H, Paterson M, Toth R, Eggleston I.  2006.  Oriented immobilisation of engineered single-chain antibodies to develop biosensors for virus detection. Journal of Virological Methods. 134:164-170. Abstract
Collazo C, Ramos PL, Chacon O, Borroto CJ, Lopez Y, Pujol M, Thomma BPHJ, Hein I, Borras-Hidalgo O.  2006.  Phenotypical and molecular characterization of Tomato mottle Taino virus - Nicotiana megalosiphon interaction. Physiological and Molecular Plant Pathology. 67:231-236. Abstract
Holeva R, Phillips MS, Neilson R, Brown DJF, Young V, Boutsika K, Blok VC.  2006.  Real-time PCR detection and quantification of vector trichodorid nematodes and Tobacco rattle virus. Molecular and Cellular Probes. 20:203-211. Abstract
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser JI, Wheatley RE, McNicol JW, Millard P.  2006.  Sheep-urine-induced changes in soil microbial community structure. FEMS Microbiology Ecology. 56:310-320. Abstract
Birch PRJ, Rehmany AP, Pritchard L, Kamoun S, Beynon JL.  2006.  Trafficking arms: oomycete effectors enter host plant cells. Trends in Microbiology. 14:8-11. Abstract
2007
Nicol GW, Campbell CD, Chapman SJ, Prosser JI.  2007.  Afforestation of moorland leads to changes in crenarchaeal community structure. FEMS Microbiology Ecology. 60(1):51-59.
Matthews RB, Gilbert N, Roach A, Polhill JG, Gotts NM.  2007.  Agent-based land use models: a review of applications. Landscape Ecology. 22(10):1447-1459.
Bacon JR, Linge KL, Parrish RR, van Vaeck L.  2007.  Atomic spectrometry update: atomic mass spectrometry. Journal of Analytical Atomic Spectrometry. 22(8):973-1006.
Anderson IC, Bastias BA, Genney DR, Parkin PI, Cairney JWG.  2007.  Basidiomycete fungal communities in Australia sclerophyll forest soil are altered by repeated prescribed burning. Mycological Research. 111(4):482-486.
Gundelwein A, Muller-Lupp T, Sommerkorn M, Haupt ETK, Pfeiffer EM, Wiechmann H.  2007.  Carbon in tundra soils in the Lake Labaz region of arctic Siberia. European Journal of Soil Science. 58(5):1164-1174.
Artz RRE, Anderson IC, Chapman SJ, Hagn A, Schloter M, Potts JM, Campbell CD.  2007.  Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands. Microbial Ecology. 54(3):508-522.
Robinson DT, Brown DG, Parker DC, Schreinemachers P, Janssen MA, Huigen M, Wittmer H, Gotts NM, Promburom P, Irwin E et al..  2007.  Comparison of empirical methods for building agent-based models in land use science. Journal of Land Use Science. 2(1):31-55.
Marrs RH, Galtress K, Tong C, Cox ES, Blackbird SJ, Heyes TJ, Pakeman RJ, Le Duc MG.  2007.  Competing conservation goals, biodiversity or ecosystem services : element losses and species recruitment in a managed moorland bracken model system. Journal of Environmental Management. 85(4):1034-1047.
Bown JL, Pachepsky E, Eberst A, Bausenwein U, Millard P, Squire G, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities. I: Model development and predicted patterns of diversity. Ecological Modelling. 207(2-4):264-276.
Pachepsky E, Bown JL, Eberst A, Bausenwein U, Millard P, Squire G, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities. II Linking diversity and function. Ecological Modelling. 207(2-4):277-285.
Anderson IC, Parkin PI.  2007.  Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules. Journal of Microbiological Methods. 68(2):248-253.
Paoletti, M.G, Osler GHR, Kinnear A, Black DG, Thomson LJ, Tsitsilas A, Sharley D, Judd S, Neville P et al..  2007.  Detritivores as indicators of landscape stress and soil degradation. Australian Journal of Experimental Agriculture. 47(4):412-423.
Ghorbani J, Le Duc M, McAllister H, Pakeman RJ, Marrs R.  2007.  Effects of experimental restoration on the diaspore bank of an upland moor degraded by Pteridium aqulinum invasion. Land Degradation and Development. 18(6):659-669.
Prosser JI, Bohannan BJM, Curtis TP, Ellis RJ, Firestone MK, Freckleton RP, Green JL, Green LE, Killham K, Lennon JJ et al..  2007.  Essay - The role of ecological theory in microbial ecology. Nature Reviews Microbiology. 5(5):384-392.
Tagarelli G, Fiorini S, Piro A, Luiselli D, Tagarelli A, Pettener D.  2007.  Ethnicity and biodemographic structure in the Arbereshe of the province of Cosenza, Souther Italy in the XIX century. Collegium Antropologicum. 31:331-338.
Fiorini S, Tagarelli G, Boattini A, Luiselli D, Piro A, Tagarelli A, Pettener D.  2007.  Ethnicity and evolution of the biodemographic structure of Arbereshe and Italian populations of the Pollino Area, Southern Italy (1820-1984). American Anthropologist. 109(4):735-746.
Perez-Barberia FJ, Schultz S, Dunbar RIM.  2007.  Evidence for coevolution of sociality and relative brain size in three orders of mammals. Evolution. 61(12):2811-2821.
Fomina M, Podgorsky VS, Olishevska SV, Kadoshnikov VM, Pisanska IR, Hillier S, Gadd GM.  2007.  Fungal deterioration of barrier concrete used in nuclear waste disposal. Geomicrobiology Journal. 24(7):643-653.
Duncan AJ, Elwert C, Villalba JJ, Yearsley J, Pouloupoulou I, Gordon IJ.  2007.  How does pattern of feeding and rate of nutrient delivery influence conditioned food preferences? Oecologia. 153(3):617-624.
Hillier S, Lumsdon DG, Brydson R, Paterson E.  2007.  Hydrogarnet: a host phase for Cr(VI) in chromite ore processing residue (COPR) and other high pH wastes. Environmental Science and Technology. 41(6):1921-1927.
Singh BK, Munro S, Potts JM, Millard P.  2007.  Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils. Applied Soil Ecology. 36(2-3):147-155.
Macdonald CA, Singh BK, Peck JA, van Schaik AP, Hunter LC, Horswell J, Campbell CD, Speir TW.  2007.  Long-term exposure to Zn-spiked sewage sludge alters soil community structure. Soil Biology and Biochemistry. 39(10):2576-2586.
Perez-Barberia FJ, Walker DM, Marion G.  2007.  Maximising intake under challenging foraging conditions at two hierarchical spatial scales in males and females of Soay sheep. Animal Behaviour. 73(2):339-348.
Cox ES, Marrs RH, Pakeman RJ, Le Duc MG.  2007.  A multi-site assessment of the effectiveness of Pteridium aquilinum control in Great Britain. Applied Vegetation Science. 10:429-440.
Palacio S, Millard P, Maestro M, Montserrat-Marti G.  2007.  Non-structural carbohydrates and nitrogen dynamics in Mediterranean sub-shrubs: an analysis of the functional role of over-wintering leaves. Plant Biology. 9(1):49-58.
Polhill JG, Edmonds B.  2007.  Open access for social simulation. Journal of Artificial Societies and Social Simulation. 10(3):10.
Hooker JE, Piatti P, Cheshire MV, Watson CA.  2007.  Polysaccharides and monosaccharides in the hyphosphere of the arbuscular mycorrhizal fungi Glomus E3 and Glomus tenue. Soil Biology and Biochemistry. 39(2):680-683.
Thornton B, Osborne SM, Paterson E, Cash P.  2007.  A proteomic and targeted metabolomic approach to investigate change in Lolium perenne roots when challenged with glycine. Journal of Experimental Botany. 58(7):1581-1590.
Walker KJ, Warman EA, Bhogal A, Cross RB, Pywell RF, Meek WR, Chambers BJ, Pakeman RJ.  2007.  Recreation of lowland heathland on ex-arable land: assessing the limiting processes on two sites with contrasting soil fertility and pH. Journal of Applied Ecology. 44(3):573-582.
Le Duc MG, Pakeman RJ, Marrs RH.  2007.  A restoration experiment on moorland infested by Pterdium aquilinum: Plant species responses. Agriculture, Ecosystems and Environment. 119(1-2):53-59.
Pedersen ML, Friberg N, Skriver J, Baattrup-Pedersen A, Larsen SE.  2007.  Restoration of Skjern River and its valley: short-term effects on river habitats, macrophytes and macroinvertebrates. Ecological Engineering. 30(2):145-156.
Paterson E, Gebbing T, Abel C, Sim A, Telfer G.  2007.  Rhizodeposition shapes rhizosphere microbial community structure in organic soil. New Phytologist. 173(3):600-610.
Paquette SR, Behncke SM, O'Brien SH, Brenneman RA, Louis EE, Lapointe FJ.  2007.  Riverbeds demarcate distinct conservation units of the radiated tortoise (Geochelone radiata) in southern Madagascar. Conservation Genetics. 8(4):797-807.
Pakeman RJ, Quested HM.  2007.  Sampling plant functional traits: what proportion of the species need to be measured? Applied Vegetation Science. 10(1):91-96.
Polhill JG, Pignotti E, Gotts NM, Edwards P, Preece A.  2007.  A semantic grid service for experimentation with an agent-based model of land use change. Journal of Artificial Societies and Social Simulation.. 10(2):2.
Carranza J, Perez-Barberia FJ.  2007.  Sexual selection and senescence: Male size-dimorphic ungulates evolved relatively smaller molars than females. American Naturalist. 170(3):370-380.
Garnier E, Ansquer P, Castro H, Cruz P, Dolezal J, Eriksson O, Fortunel C, Freitas H, Golodets C, Grigulis C et al..  2007.  A standardized methodology to assess the effects of land use change on plant traits, communities and ecosystem functioning in grasslands. Annals of Botany. 99(5):967-985.
Fischer A, Petersen L, Feldkoetter C, Huppert W.  2007.  Sustainable governance of natural resources and institutional change - an analytical framework. Public Administration and Development. 27(2):123-137.
Ghorbani J, Le Duc MG, McAllister HA, Pakeman RJ, Marrs RH.  2007.  Temporal responses of propagule banks during ecological restoration in the UK. Restoration Ecology. 15(1):103-117.
Izquierdo LR, Izquierdo SS, Gotts NM, Polhill JG.  2007.  Transient and asymptotic dynamics of reinforcement learning in games. Games and Economic Behavior. 61(2):259-276.
Dullinger S, Kleinbauer I, Pauli H, Gottfried M, Brooker RW, Nagy L, Theurillat JP, Holten JI, Abdaladze O, Benito JL et al..  2007.  Weak and variable relationships between environmental severity and small-scale co-occurrence in alpine plant communities. Journal of Ecology. 95(6):1284-1295.
Perez-Barberia FJ, Robertson E, Soriguer R, Aldezabal A, Mendizabal M.  2007.  Why polygynous ungulates segregate in space? Testing the activity budget hypothesis in Soay sheep Ecological Monographs. 77(4):631-647.
Scagliarini A, McInnes CJ, Gallina L, Dal Pozza F, Scagliarini L, Snoeck R, Prosperi S, Sales J, Gilray JA, Nettleton PF.  2007.  Antiviral activity of HPMPC (cidofovir) against orf virus infected lambs. Antiviral Research. 73:169-174. Abstract
Squires J, Stephens J, Schoelz JE, Palukaitis P.  2007.  Assessment of CaMV-mediated gene silencing and integration of CaMV into GM plants with a 35S RNA promoter. Environmental Biosafety Research. 6:259-270. Abstract
Forster BP, Franckowiak JD, Lundqvist U, Lyon J, Pitkethly I, Thomas WTB.  2007.  The barley phytomer. Annals of Botany. 100:725-733. Abstract
Artz RRE, Anderson IC, Chapman SJ, Hagn A, Schloter M, Potts JM, Campbell CD.  2007.  Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands. Microbial Ecology. 54:508-522. Abstract
Mazzitelli L, Hancock RD, Haupt S, Walker PG, Pont SDA, McNicol JW, Cardle L, Morris J, Viola R, Brennan RM et al..  2007.  Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.. Journal of Experimental Botany. 58:1035-1045. Abstract
Coates EM, Popa G, Gill CIR, McCann M, McDougall GJ, Stewart D, Rowland I.  2007.  Colon-available raspberry extract exhibit anti-cancer effects on in vitro models of colon cancer. Proceedings of the Nutrition Society. 66:67A-67A.
Coates EM, Popa G, Gill CIR, McCann MJ, McDougall GJ, Stewart D, Rowland I.  2007.  Colon-available raspberry polyphenols exhibit anti-cancer effects on in vitro models of colon cancer. Journal of Carcinogenesis. 6:1-13. Abstract
Bown JL, Pachepsky E, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 1: Model development and predicted patterns of diversity. Ecological Modelling. 207:264-276. Abstract
Pachepsky E, Bown JL, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 2: Linking diversity and function. Ecological Modelling. 207:277-285. Abstract
Beerling DJ, Hewitt CN, Pyle JA, Raven JA.  2007.  Critical issues in trace gas biogeochemistry and global change. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1629-1642. Abstract
Woodhead M, Russell JR, Squirrell J, Hollingsworth PM, Cardle L, Gibby M, Powell W.  2007.  Development of EST-derived microsatellite markers for Arabidopsis lyrata subspecies petraea (L.). Molecular Ecology Notes. 7:631-634. Abstract
Ravirala RS, Barabote RD, Wheeler DM, Reverchon S, Tatum O, Malouf J, Liu H, Pritchard L, Hedley PE, Birch PRJ et al..  2007.  Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract
Shams-Bakhsh M, Canto T, Palukaitis P.  2007.  Enhanced resistance and neutralization of defense responses by suppressors of RNA silencing. Virus Research. 130:103-109. Abstract
Cortet J, Griffiths BS, Bohanec M, Demsar D, Andersen MN, Caul S, Birch ANE, Pernin C, Tabone E, de Vaufleury A et al..  2007.  Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
de Vaufleury A, Kramarz P, Binet P, Cortet J, Caul S, Andersen MN, Plumey E, Coeurdassier M, Krogh PH.  2007.  Exposure and effects assessments of Bt maize on non-target organisms (gastropod, microarthropods, mycorrhizal fungi) in a semi-field microcosm experiment. Pedobiologia. 51:185-194. Abstract
Kikuchi T, Aikawa T, Kosaka H, Pritchard L, Ogura N, Jones JT.  2007.  Expressed sequence tag (EST) analysis of the pine wood nematode Bursaphelenchus xylophilus and B. mucronatus. Molecular and Biochemical Parasitology. 155:9-17. Abstract
Chesnay C, Kumar A, Pearce SR.  2007.  Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract
Hopkins DW, Webster EA, Boerjan W, Pilate G, Halpin C.  2007.  Genetically modified lignin belowground. Nature Biotechnology. 25:168-169. Abstract
Singh BK, Munro S, Potts JM, Millard P.  2007.  Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils. Applied Soil Ecology. 36:147-155. Abstract
Gilroy EM, Hein I, van der Hoorn R, Boevink P, Venter E, McLellan H, Kaffarnik F, Hrubikova K, Shaw J, Holeva MC et al..  2007.  Involvement of cathepsin B in the plant disease resistance hypersensitive response. Plant Journal. 52:1-13. Abstract
Hancock RD, Walker PG, Pont SDA, Marquis N, Vivera S, Gordon SL, Brennan RM, Viola R.  2007.  L-Ascorbic acid accumulation in fruit of Ribes nigrum occurs by in situ biosynthesis via the L-galactose pathway. Functional Plant Biology. 34:1080-1091. Abstract
Allcroft DJ, Glasbey CA, Paulo MJ.  2007.  A latent Gaussian model for multivariate consumption data. Food Quality and Preference. 18:508-516. Abstract
Gibson T, Blok VC, Phillips MS, Hong G, Kumarasinghe D, Riley IT, Dowton M.  2007.  The mitochondrial subgenomes of the nematode Globodera pallida are mosaics: Evidence of recombination in an animal mitochondrial genome. Journal of Molecular Evolution. 64:463-471. Abstract
Rae SJ, Macaulay M, Ramsay L, Leigh F, Matthews D, O'Sullivan DM, Donini P, Morris PC, Powell W, Marshall DF et al..  2007.  Molecular barley breeding. Euphytica. 158:295-303. Abstract
Dietrich C, Miller J, McKenzie G, Palkovics L, Bal E, Palukaitis P, Maiss E.  2007.  No recombination detected between potyvirus mixed infections and between potyvirus derived transgenes and heterologous challenging potyviruses. Environmental Biosafety Research. 6:207-218. Abstract
Avrova AO, Whisson SC, Pritchard L, Venter E, de Luca S, Hein I, Birch PRJ.  2007.  A novel, non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans. Microbiology. 153:747-759. Abstract
Kaplan IB, Lee L, Ripoll DR, Palukaitis P, Gildow FE, Gray SM.  2007.  Point mutations in the potato leafroll virus major capsid protein alter virion stability and aphid transmission. Journal of General Virology. 88:1821-1830. Abstract
Molina-Cano J-L, Moralejo MA, Elia M, Mu P, Russell JR, P AM, Ciudad F, Swanston JS.  2007.  QTL analysis of a cross between European and North American malting barleys reveals a putative candidate gene for . Molecular Breeding. 19:275-284. Abstract
Jones JT, Furlanetto C, Phillips M.  2007.  The role of flavonoids produced in response to cyst nematode infection of Arabidopsis thaliana. Nematology. 9:671-677. Abstract
de Dorlodot S, Forster BP, Pag L, Price AH, Tuberosa R, Draye X.  2007.  Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science. 12:474-481. Abstract
Poulsen M, Schroder M, Wilcks A, Kroghsbo S, Lindecrona RH, Miller A, Frenzel T, Danier J, Rychlik M, Shu QY et al..  2007.  Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
Armstrong MR, Husmeier D, Phillips MS, Blok VC.  2007.  Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida. Journal of Molecular Evolution. 64:689-701. Abstract
Lewsey M, Robertson FC, Canto T, Palukaitis P, Carr JP.  2007.  Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein. Plant Journal. 50:240-252. Abstract
Luo ZW, Potokina E, Druka A, Wise R, Waugh R, Kearsey MJ.  2007.  SFP genotyping from Affymetrix arrays is robust but largely detects cis-acting expression regulators. Genetics. 176:789-800. Abstract
Moora M, Daniell TJ, Kalle H, Liira J, P K, Roosaluste E, Opik M, Wheatley RE, Zobel M.  2007.  Spatial pattern and species richness of boreonemoral forest understorey and its determinants - A comparison of differently managed forests. Forest Ecology & Management. 250:64-70. Abstract
Chung BN, Canto T, Palukaitis P.  2007.  Stability of recombinant plant viruses containing genes of unrelated plant viruses. Journal of General Virology. 88:1347-1355. Abstract
Bohan DA, Hawes C, Haughton AJ, Denholm I, Champion GT, Perry JN, Clark SJ.  2007.  Statistical models to evaluate invertebrate-plant trophic interactions in arable systems. Bulletin of Entomological Research. 97:265-280. Abstract
Viola R, Pelloux J, van der Ploeg A, Gillespie T, Marquis N, Roberts AG, Hancock RD.  2007.  Symplastic connection is required for bud outgrowth following dormancy in potato (Solanum tuberosum L.) tubers. Plant, Cell and Environment. 30:973-983. Abstract
Whisson SC, Boevink P, Moleleki LN, Avrova AO, Morales JG, Gilroy EM, Armstrong MR, Grouffaud S, van West P, Chapman S et al..  2007.  A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature. 450:115-118. Abstract
Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell AJ, Leroy P, Morgante M, Panaud O, Paux E et al..  2007.  A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics. 8:973-982. Abstract
2008
Paterson E, Thornton B, Midwood AJ, Osborne SM, Sim A, Millard P.  2008.  Atmospheric CO2 enrichment and nutrient additions to planted soil increase mineralisation of soil organic matter, but do not alter microbial utilisation of plant and soil C-sources. Soil Biology and Biochemistry. 40(9):2434-2440.
Bacon JR, Linge KL, Parrish RR, van Vaeck L.  2008.  Atomic spectrometry update. Atomic mass spectrometry. Journal of Analytical Atomic Spectrometry. 23
Palacio S, Hester AJ, Maestro M, Millard P.  2008.  Browsed Betula pubescens trees are not carbon-limited. Functional Ecology. 22(5):808-815.
Phillip S, MacMillan DC.  2008.  Car park charging in the Cairngorms National Park. Scottish Geographical Journal. 122(3):204-222.
Pidou M, Memon FA, Avery LM, Parsons SA, Liu S, Stephenson T, Jeffrey P, Jefferson B.  2008.  Chemical solutions for grey water recycling. Chemosphere. 71:147-155.
Perez-Espona S, Perez-Barberia FJ, McLeod JE, Jiggins CD, Gordon IJ, Pemberton JM.  2008.  Climbing ev'ry mountain: How do landscape features affect gene exchange among Scottish red deer populations? Deer, The Journal of the British Deer Society. 14:38-41.
MacMillan DC, Phillip S.  2008.  Consumptive and non-consumptive values of wild mammals in Britain. Mammal Review. 38(2-3):189-204.
Stewart G, Cox ES, Le Duc MG, Pakeman RJ, Pullin AS, Marrs RH.  2008.  Control of bracken (Pteridium aquilinum): meta-analysis of a multi-site study in the UK. Annals of Botany. 101:957-970.
Spurgeon DJ, Rowl, P., Ainsworth G, Rotheryl P, Long S, Black HIJ.  2008.  Distribution patterns of metals (Cd, Cu, Cr, Ni, Pb, V and Zn) in British soils. Environmental Pollution. 153(2):273-283.
Anderson IC, Parkin PI, Campbell CD.  2008.  DNA- and RNA- derived assessments of fungal community composition in soil amended with sewage sludge rich in cadmium, copper and zinc. Soil Biology and Biochemistry. 40(9):2358-2365.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.