Publications list

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2010

Reed MS, Bonn A, Slee W, Beharry-Borg N, Birch J, Brown I, Burt TP, Chapman D, Chapman PJ, Clay G et al.. 2010. The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.

Ross LC, Woodin SJ, Hester AJ, Thompson DBA, Birks HJB. 2010. How important is plot relocation accuracy when interpreting re-visitation studies of vegetation change? Plant Ecology and Diversity. 3(1):1-8.

McDonnell JJ, McGuire K, Aggarwal KP, Beven K, Biondi D, Destouni G, Dunn S, James A, Kirchner J, Kraft P et al.. 2010. How old is the streamwater? Open questions in catchment transit time conceptualization, modelling and analysis Hydrological Processes. 24(12):1745-1754.

Sutherland WJ, Albon SD, Allison H, Armstrong-Brown S, Bailey MJ, Bereton T, Boyd IL, Carey P, Edwards J, Gill M et al.. 2010. The identification of priority opportunities for UK nature conservation policy. Journal of Applied Ecology. 47(5):955-965.

Sebert SP, Hyatt MA, Chan LLY, Yiallourides M, Fainberg HP, Patel N, Sharkey D, Stephenson T, Rhind SM, Bell RC et al.. 2010. Influence of prenatal nutrition and obesity on tissue specific fat mass and obesity-associated (FTO) gene expression. Reproduction. 139(1):265-274.

Hough RL, Fletcher T, Leonardi GS, Goessler W, Gnagnarella P, Clemens F, Gurzau E, Koppova K, Rudnai P, Kumar R et al.. 2010. Lifetime exposure to arsenic in residential drinking water in Central Europe. International Archives of Occupational and Environmental Health. 83(5):471-481.

Evans C, Cooper D, Monteith D, Helliwell R, Moldan F, Hall J, Rowe E, Cosby J. 2010. Linking monitoring and modelling: can long-term datasets be used more effectively as a basis for large-scale prediction? Biogeochemistry. 101(1-3):211-227.

Rhind SM, Kyle CE, Mackie C, McDonald L, Zhang Z, Duff EI, Bellingham M, Amezaga MR, Mandon-Pepin B, Loup B et al.. 2010. Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.

Singh BK, Bardgett R, Smith P, Reay D. 2010. Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nature Reviews Microbiology. 8(11):779-790.

Stockan JA, Rao S, Pakeman RJ. 2010. Nesting preferences of the threatened wood ant Formica exsecta (Hymenoptera: Formicidae): implications for conservation in Scotland. Journal of Insect Conservation.. 14(3):269-276.

Minderman J, Reid JM, Hughes M, Denny MJH, Hogg S, Evans PGH, Whittingham MJ. 2010. Novel environment exploration and home range size in starlings Sturnus vulgaris. Behavioral Ecology. 21(6):1321-1329.

Grimm V, Berger U, DeAngelis DL, Polhill JG, Giske J, Railsback SF. 2010. The ODD protocol for describing individual-based and agent-based models: A first update. Ecological Modelling. 221(23):2760-2768.

Msoffe F, Ogoto J, Bedelian C, Said M, Kifugo S, Reid R, Kaaya J, Neselle M, van Gardingen P, Thirgood SJ. 2010. Participatory wildlife surveys in communal lands: a case study from Simanjiro, Tanzania. African Journal of Ecology. 8(3):727-735.

Andersen R, Rochefort L, Poulin M. 2010. Peat, water and plant tissue chemistry monitoring: A seven-year case-study in a restored peatland. Wetlands. 30(1):159-170.

Zhang ZL, Shanmugam M, Rhind SM. 2010. PLE and GC-MS determination of polybrominated diphenyl ethers in soils. Chromatographia. 72(7-8):535-543.

Lind PM, Oberg D, Larsson S, Kyle CE, Orberg J, Rhind SM. 2010. Pregnant ewes exposed to multiple endocrine disrupting pollutants through sewage sludge-fertilised pasture show an anti-estrogenic effect in their trabecular bone. The Science of the Total Environment. 408:2340-2346.

Beechie TJ, Sear DA, Olden JD, Pess GR, Buffington JM, Moir HJ, Roni P, Pollock MM. 2010. Process-based principles for restoring river ecosystems. BioScience. 60(3):209-222.

Matthews KB, Rivington M, Blackstock KL, McCrum G, Buchan K, Miller DG. 2010. Raising the bar? The challenge of evaluating the outcomes of environmental modelling and software Environmental Modelling and Software. 26(3):247-257.

Rousidou C, Papadopoulou K, Zervakis G, Singh BK, Ehaliotis C, Karpouzas DG. 2010. Repeated application of diluted olive mill wastewater induces changes in the structure of the soil microbial community. European Journal of Soil Biology. 46(1):34-40.

Stutter MI, Richards S, Langan SJ, Lumsdon DG. 2010. Reply to comment on 'Multi-element' signatures of stream sediments and their sources under moderate to low flow conditions. Applied Geochemistry. 25(10):1617-1619.

Ruiz-Fons F, Gilbert L. 2010. The role of deer as vehicles to move ticks, Ixodes ricinus, between contrasting habitats. International Journal for Parasitology. 40(9):1013-1020.

Robinson D, Trinder C, Davidson H, Brooker RW. 2010. Root-shoot growth responses during interspecific competition quantified using allometric modelling. Annals of Botany. 106(6):921-926.

Alexandrov GA, Ames D, Aumann C, Bellocchi G, Bruen M, Crout N, Erechtchoukova M, Hildebrandt A, Hoffman F, Jackisch C et al.. 2010. Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.

Toftegaard T, Iason GR, Alexander IJ, Rosendahl S, Taylor AFS. 2010. The threatened plant intermediate wintergreen (Pyrola media Sw.) associates with a wide range of biotrophic fungi in native Scottish pine woods. Biodiversity and Conservation. 19(14):3963-3971.

Travis JMJ, Smith HS, Ranwala SMW. 2010. Towards a mechanistic understanding of dispersal evolution in plants: conservation implications. Diversity and Distributions. 16(4):690-702.

Teel T, Manfredo M, Jensen FS, Buijs A, Fischer A, Riepe C, Arlinghaus R, Jacobs M. 2010. Understanding the cognitive basis for human-wildlife relationships. International Journal of Sociology. 40:104-123.

Belocchi G, Rivington M, Donatelli M, Matthews KB. 2010. Validation of biophysical models: issues and methodologies. A review. Agronomy for Sustainable Development.. 30(1):109-130.

Bellocchi G, Rivington M, Donatelli M, Matthews KB. 2010. Validation of biophysical models: issues and methodologies: a review. In: Sustainable Farming Systems, Springer Sciencce. 30:109-130.

Mauro-Herrera M, Meerow AW, Perera L, Russell JR, Schnell RJ. 2010. Ambiguous genetic relationships among coconut (Cocos nucifera L.) cultivars: the effects of outcrossing, sample source and size, and method of analysis. Genetic Resources and Crop Evolution. 57:203-217.

Reyers B, Pettorelli N, Katzner T, Gompper ME, Redpath S, Garner TWJ, Altwegg R, Reed DH, Gordon IJ. 2010. Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13:523-525.

Navajas EA, Glasbey CA, Fisher AV, Ross DW, Hyslop JJ, Richardson RI, Simm G, Roehe R. 2010. Assessing beef carcass tissue weights using computed tomography spirals of primal cuts. Meat Science. 84:30-38.

Karunakaran R, Haag AF, East AK, Ramachandran VK, Prell J, James EK, Scocchi M, Ferguson GP, Poole PS. 2010. BacA is essential for bacteroid development in nodules of galegoid, but not phaseoloid, legumes. Journal of Bacteriology. 192:2920-2928.

Whitson J, McDougall GJ, Ross HA, Lund VA, Hamilton CA, Dominiczak AF, Stewart D. 2010. Bioactive berry components: Potential modulators of health benefits. Functional Plant Science and Biotechnology. 4:34-38.

Duthie SJ, Horgan GW, de Roos B, Rucklidge GJ, Reid M, Duncan G, Pirie L, Basten GP, Powers HJ. 2010. Blood folate status and expression of proteins involved in immune function, inflammation and coagulation: Biochemical and proteomic changes in the plasma of humans in response to long-term synthetic folic acid supplementation. Journal of Proteome Research. 9:1941-1950.

Hedley PE, Russell JR, Jorgensen L, Gordon S, Morris JA, Hackett CA, Cardle L, Brennan RM. 2010. Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.). BMC Plant Biology. 10:-202.

Newton AC, Akar T, Baresel JP, Bebeli PJ, Bettencourt E, Bladenopoulos KV, Czembor JH, Fasoula DA, Katsiotis A, Koutis K et al.. 2010. Cereal landraces for sustainable agriculture. A review (Review). Agronomy for Sustainable Development. 30:237-269.

Pattemore JA, Rice N, Marshall DF, Waugh R, Henry RJ. 2010. Cereal variety identification using MALDI-TOF mass spectrometry SNP genotyping. Journal of Cereal Science. 52:356-361.

Elderfield H, Riebesell U, Raven JA, Gattuso JP, Lipps J. 2010. Closure threat to key museum research facility. Nature. 465:-1005.

Denwood MJ, Reid SWJ, Love S, Nielsen MK, Matthews L, McKendrick IJ, Innocent GT. 2010. Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.

Smith P, Gregory PJ, van Vuuren D, Obersteiner M, Havlik P, Rounsevell M, Woods J, Stehfest E, Bellarby J. 2010. Competition for land. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 365:2941-2957.

Gonz I, Mart I, Rakitina DV, Lewsey MG, Atencio FA, Llave C, Kalinina NO, Carr JP, Palukaitis P, Canto T. 2010. Cucumber mosaic virus 2b protein subcellular targets and interactions: Their significance to RNA silencing suppressor activity. Molecular Plant-Microbe Interactions. 23:294-303.

Raven JA. 2010. Cyanotoxins: A poison that frees phosphate. Current Biology. 20:R850-R852.

Phillips D, Nibau C, Ramsay L, Waugh R, Jenkins G. 2010. Development of a molecular cytogenetic recombination assay for barley. Cytogenetic and Genome Research. 129:154-161.

Ievina N, Syed NH, Flavell AJ, Ievinsh G, Rostoks N. 2010. Development of retrotransposon-based SSAP molecular marker system for study of genetic diversity in sea holly (Eryngium maritimum L.). Plant Genetic Resources - Characterization and Utilization. 8:258-266.

Ross HA, McDougall GJ, Vincent JFV, Stewart D, Verrall SR, Taylor MA. 2010. Discerning intra-tuber differences in textural properties in cooked Solanum tuberosum group Tuberosum and group Phureja tubers. Journal of the Science of Food and Agriculture. 90:1527-1532.

Moragues M, Comadran J, Waugh R, Milne I, Flavell AJ, Russell JR. 2010. Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data. Theoretical and Applied Genetics. 120:1525-1534.

Chen XW, Hackett CA, Niks RE, Hedley PE, Booth C, Druka A, Marcel TC, Vels A, Bayer M, Milne I et al.. 2010. An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One. 5:-e8598.

Roberts TJ, McKenna SJ, Du CJ, Wuyts N, Valentine TA, Bengough AG. 2010. Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images. Machine Vision and Applications. 21:921-939.

Fyfe CL, Stewart J, Murison SD, Jackson DM, Rance K, Speakman JR, Horgan GW, Johnstone AM. 2010. Evaluating energy intake measurement in free-living subjects: when to record and for how long? Public Health Nutrition. 13:172-180.

Raven JA, Andrews M. 2010. Evolution of tree nutrition. Tree Physiology. 30:1050-1071.

Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Guzy-Wrobelska J, Ramsay L, Druka I, Grant I, Macaulay M et al.. 2010. Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38:683-688.

Berepiki A, Lichius A, Shoji JY, Tilsner J, Read ND. 2010. F-actin dynamics in Neurospora crassa. Eukaryotic Cell. 9:547-557.

Porter JR, Challinor A, Ewert F, Falloon P, Fischer T, Gregory PJ, Van Ittersum MK, Olesen JE, Moore KJ, Rosenzweig C et al.. 2010. Food security: focus on agriculture. Science. 328:172-173.

Richards S, Gibbs RA, Gerardo NM, Moran N, Nakabachi A, Stern D, Tagu D, Wilson ACC, Muzny D, Kovar C et al.. 2010. Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.

Cockram J, White J, Zuluaga D, Smith D, Comadran J, Macaulay M, Luo ZW, Kearsey MJ, Werner P, Harrap D et al.. 2010. Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.

Yang S, Peng Q, Zhang Q, Zou L, Li Y, Robert C, Pritchard L, Liu H, Hovey R, Wang Q et al.. 2010. Genome-wide identifiction of HrpL-regulated genes in the necrotrophic phytopathogen Dickeya dadantii 3937. PLoS One. 5:-e13472.

Bessell PR, Matthews L, Smith-Palmer A, Rotariu O, Strachan NJC, Forbes KJ, Cowden J, Reid SWJ, Innocent GT. 2010. Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health. 10:-423.

Gadd GM, Raven JA. 2010. Geomicrobiology of eukaryotic microorganisms. Geomicrobiology Journal. 27:491-519.

Raven JA, Thomas H. 2010. Grasses. Current Biology. 20:R837-R839.

Nowara D, Gay A, Lacomme C, Shaw J, Ridout C, Douchkov D, Hensel G, Kumlehn J, Schweizer P. 2010. HIGS: Host-induced gene silencing in the obligate biotrophic fungal pathogen Blumeria graminis. Plant Cell. 22:3130-3141.

Grant OM, Tronina L, Ramalho JC, Besson CK, Lobo-Do-Vale R, Pereira JS, Jones HG, Chaves MM. 2010. The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.

Bek AS, Sauer J, Thygesen MB, Duus JO, Petersen BO, Thirup S, James EK, Jensen KJ, Stougaard J, Radutoiu S. 2010. Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.

Raven JA. 2010. Inorganic carbon acquisition by eukaryotic algae: four current questions. Photosynthesis Research. 106:123-134.

Raczynska KD, Simpson CG, Ciesiolka A, Szewc L, Lewandowska D, McNicol JW, Szweykowska-Kulinska Z, Brown JWS, Jarmolowski A. 2010. Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.. Nucleic Acids Research. 38:265-278.

Taliansky ME, Brown JWS, Rajam ML, Valkonen JPT, Kalinina NO. 2010. Involvement of the plant nucleolus in virus and viroid infections: Parallels with animal pathosystems. Advances in Virus Research. 77:119-158.

Flynn KJ, Raven JA, Rees TAV, Finkel ZV, Quigg A, Beardall J. 2010. Is the growth rate hypothesis applicable to microalgae? Journal of Phycology. 46:1-12.

Blum M, Boehler M, Randall E, Young V, Csukai M, Kraus S, Moulin F, Scalliet G, Avrova AO, Whisson SC et al.. 2010. Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.

Campbell R, Ducreux LJM, Morris WL, Morris JA, Suttle JC, Ramsay G, Bryan GJ, Hedley PE, Taylor MA. 2010. The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.

Davies HV, Shepherd LVT, Stewart D, Frank T, R R, Engel K-H. 2010. Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.

Renberg L, Johansson AI, Shutova T, Stenlund H, Aksmann A, Raven JA, Gardestrom P, Moritz T, Samuelsson G. 2010. A metabolomic approach to study major metabolite changes during acclimation to limiting CO2 in Chlamydomonas reinhardtii. Plant Physiology. 154:187-196.

Dobson G, Shepherd T, Verrall SR, Griffiths DW, Ramsay G, McNicol JW, Davies HV, Stewart D. 2010. A metabolomics study of cultivated potato (Solanum tuberosum) groups, Andigena, Phureja, Stenotomum and Tuberosum using gas chromatography-mass spectrometry. Journal of Agricultural and Food Chemistry. 58:1214-1223.

Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG et al.. 2010. A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.

Castillo NRF, Reed BM, Graham J, Fern F, Bassil NV. 2010. Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.

Grzegorczyk M, Husmeier D, Rahnenf J. 2010. Modelling nonstationary gene regulatory processes. Advances in Bioinformatics. :-749848.

Madsen LH, Tirichine L, Jurkiewicz A, Sullivan JT, Heckmann AB, Bek AS, Ronson CW, James EK, Stougaard J. 2010. The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.

Hackett CA, Russell JR, Jorgensen L, Gordon SL, Brennan RM. 2010. Multi-environment QTL mapping in blackcurrant (Ribes nigrum L.) using mixed models. Theoretical and Applied Genetics. 121:1483-1488.

Wright KM, Cowan GH, Lukhovitskaya NI, Tilsner J, Roberts AG, Savenkov EI, Torrance L. 2010. The N-terminal domain of PMTV TGB1 movement protein is required for nucleolar localization, microtubule association and long-distance movement. Molecular Plant-Microbe Interactions. 23:1486-1497.

Jamar C, Loffet F, Frettinger P, Ramsay L, Fauconnier ML, du Jardin P. 2010. NAM-1gene polymorphism and grain protein content in Hordeum. Journal of Plant Physiology. 167:497-501.

Dos Reis J FB, Simon MF, Gross E, Boddey RM, Elliott GN, Neto NE, Loureiro MdeF, de Queiroz LP, Scotti MR, Chen W-M et al.. 2010. Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.

Raven JA, Knoll AH. 2010. Non-skeletal biomineralisation by eukaryotes: Matters of moment and gravity. Geomicrobiology Journal. 27:572-584.

Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Schoaei Z, Deal KR, Langridge P. 2010. Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. BMC Genomics. 11:-382.

Finkel ZV, Beardall J, Flynn KJ, Quigg A, Rees TAV, Raven JA. 2010. Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.

Rietman H, Champouret N, Hein I, Niks RE, Vleeshouwers VGAA. 2010. Plant and oomycetes, an intimate relationship: co-evolutionary principles and impact on agricultural practice. CAB Review. 58:1-17.

Lambers H, Brundett MC, Raven JA, Hopper SD. 2010. Plant mineral nutrition in ancient landscapes: high plant species diversity on infertile soils is linked to functional diversity for nutritional strategies. Plant and Soil. 334:11-31.

Hinojosa MB, Carreira JA, Garc R, Rodr JM, Daniell TJ, Griffiths BS. 2010. Plant treatment, pollutant load and soil type effects in the rhizosphere ecology of trace element polluted soils. Ecotoxicology and Environmental Safety. 73:970-981. Abstract

Tilsner J, Cowan GH, Roberts AG, Chapman SN, Ziegler A, Savenkov EI, Torrance L. 2010. Plasmodesmal targeting and intercellular movement of Potato mop-top pomovirus is mediated by a membrane anchored tyrosine-based motif on the lumenal side of the endoplasmic reticulum and the C-terminal transmembrane domain in the TGB3 movement protein. Virology. 402:41-51.

Andrews M, Hodge S, Raven JA. 2010. Positive plant microbial interactions. Annals of Applied Biology. 157:317-320.

Gill CIR, McDougall GJ, Glidewell SM, Stewart D, Shen Q, Tuohy K, Dobbin A, Boyd A, Brown E, Haldar S et al.. 2010. Profiling of phenols in human faecal water after raspberry supplementation. Journal of Agricultural and Food Chemistry. 58:10389-10395.

Rotariu O, Smith-Palmer A, Cowden J, Bessell PR, Innocent GT, Reid SWJ, Matthews L, Dallas J, Ogden ID, Forbes KJ et al.. 2010. Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.

Robinson G, Wright S, Elwin K, Hadfield SJ, Katzer F, Bartley PM, Hunter PR, Nath M, Innes EA, Chalmers RM. 2010. Re-description of Cryptosporidium cuniculus Inman and Takeuchi 1979 (Apicomplexa:Cryptosporidiidae): morphology, biology and phylogeny. International Journal for Parasitology. 40:1539-1548.

Oliva R, Win J, Raffaele S, Boutemy L, Bozkurt TO, Chaparro-Garcia A, Segretin ME, Stam R, Schornack S, Cano LM et al.. 2010. Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.

Simpson CG, Manthri S, Raczynska KD, Kalyna M, Lewandowska D, Kusenda B, Maronova M, Szweykowska-Kulinska Z, Jarmolowski A, Barta A et al.. 2010. Regulation of plant gene expression by alternative splicing. Biochemical Society Transactions. 38:667-671.

K A, Kuiper HA, Marvin HJP, Boon PE, Busk L, Cnudde FC, Cope S, Davies HV, Dreyer M, Frewer LJ et al.. 2010. The SAFE FOODS framework for improved risk analysis of foods. Food Control. 21:1566-1587.

Cock PJA, Fields CJ, Goto N, Heuer ML, Rice PM. 2010. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research. 38:1767-1771.

Praveen S, Ramesh SV, Mishra AK, Koundal V, Palukaitis P. 2010. Silencing potential of viral-derived RNAi constructs in Tomato leaf curl virus-AC4 gene suppression in tomato. Transgenic Research. 19:45-55.

Bingham IJ, Bengough AG, Rees RM. 2010. Soil compaction - N interactions in barley: Root growth and tissue composition. Soil and Tillage Research. 106:241-246.

Rustenholz C, Hedley PE, Morris J, Choulet F, Feuillet C, Waugh R, Paux E. 2010. Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources. BMC Genomics. 11:-714.

Hodgson JG, Sharafi M, Jalili A, Diaz S, Montserrat-Marti G, Palmer C, Cerabolini B, Pierce S, Hamzehee B, Asri Y et al.. 2010. Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.

Ballingall KT, Rocchi M, McKeever DJ, Wright F. 2010. Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.

Zhang K, Greenwood DJ, Spracklen WP, Rahn CR, Hammond JP, White PJ, Burns IG. 2010. A universal agro-hydrological model for water and nitrogen cycles in the soil-crop system SMCR_N: Critical update and further validation. Agricultural Water Management. 97:1411-1422.

Lichner L, Hallett PD, Orfanus T, Czachor H, Rajkai K, Sir M, Tesai M. 2010. Vegetation impact on the hydrology of an aeolian sandy soil in a continental climate. Ecohydrology. 3:413-420.

Waugh R, Marshall DF, Thomas WTB, Comadran J, Russell JR, Close T, Stein N, Hayes P, Muehlbauer G, Cockram J et al.. 2010. Whole-genome association mapping in elite inbred crop varieties. Genome. 53:967-972.

Raven JA. 2010. Why are mycorrhizal fungi and symbiotic nitrogen-fixing bacteria not genetically integrated into plants? Annals of Applied Biology. 157:381-391.

2011

Bouwman FG, de Roos B, Rubio-Aliaga I, Crosley LK, Duthie SJ, Mayer CD, Horgan GW, Polley AC, Heim C, Coort SLM et al.. 2011. 2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting. BMC Medical Genomics. 4

Hill PW, Quilliam RS, DeLuca TH, Farrar J, Farrell M, Roberts P, Newsham KK, Hopkins DW, Bardgett RD, Jones DL. 2011. Acquisition and assimilation of nitrogen as peptide-bound and D-enantiomers of amino acids by wheat. PLoS ONE. 6:e19220.

Raven JA, Giordano M, Beardall J, Maberly SC. 2011. Algal and aquatic plant carbon concentrating mechanisms in relation to environmental change. Photosynthesis Research. 109:281-296.

Spies A, Korzun V, Bayles R, Rajaraman J, Hedley PE, Schweizer P. 2011. Allele mining in barley genetic resources reveals genes of race-nonspecific powdery mildew resistance. Frontiers in Plant Science: Plant Nutrition. 2:e113.

Russell JR, Dawson IK, Flavell AJ, Steffenson B, Weltzien E, Booth A, Ceccarelli S, Grando S, Waugh R. 2011. Analysis of >1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes. New Phytologist. 191:564-578.

Nwosu F, Morris J, Lund VA, Stewart D, Ross HA, McDougall GJ. 2011. Anti-proliferative and potential anti-diabetic effects of phenolic-rich extracts from edible marine algae. Food Chemistry. 126:1006-1012.

Rosling A, Cox F, Cruz-Martinez K, Ihrmark K, Grelet GA, Lindahl BD, Menkis A, James TY. 2011. Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science. 333:876-879.

Lennon JJ, Beale CM, Reid CL, Kent M, Pakeman RJ. 2011. Are richness patterns of common and rare species equally well explained by environmental variables? Ecography. 34:529-539.

Wuyts N, Bengough AG, Roberts TJ, Du C, Bransby MF, McKenna SJ, Valentine TA. 2011. Automated motion estimation of root responses to sucrose in two Arabidopsis thaliana genotypes using confocal microscopy. Planta. 234:769-784.

Cornulier T, Robinson RA, Elston DA, Lambin X, Sutherland WJ, Benton T. 2011. Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution. 2:86-94.

Prior GL, Evans DM, Thirgood SJ, Redpath S, Monaghan P. 2011. Birds bias offspring sex ratio in response to livestock grazing. Biology Letters. 7:958-960.

Dawson IK, Vinceti B, Weber JC, Neufeldt H, Russell JR, Lengkeek AG, Kalinganire A, Kindt R, Lilles JPB, Roshetko J et al.. 2011. Climate change and tree genetic resource management: maintaining and enhancing the productivity and value of smallholder tropical agroforestry landscapes (Review). Agroforestry Systems. 81:67-78.

Raven JA. 2011. Climate: baselines for the biological effects of environmental change. Current Biology. 21:R190-R192.

Dick J, Andrews C, Beaumont DA, Benham S, Brooks DR, Corbett S, Lloyd D, McMillan S, Monteith DT, Pilgrim ES et al.. 2011. A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.

Vinten AJA, Artz RRE, Thomas N, Potts JM, Avery LM, Langan SJ, Watson H, Cook Y, Taylor C, Abel C et al.. 2011. Comparison of microbial community assays for the assessment of stream biofilm ecology. Journal of Microbiological Methods. 85:190-198.

Raven JA. 2011. The cost of photoinhibition. Physiologia Plantarum. 142:87-104.

Newton AC, Flavell AJ, George TS, Leat P, Mullholland BJ, Ramsay L, Revoredo-Giha C, Russell JR, Steffenson BJ, Swanston JS et al.. 2011. Crops that feed the world 4. Barley: a resilient crop? Strengths and weaknesses in the context of food security Food Security. 3:141-178.

Francia E, Tondelli A, Rizza F, Badeck FW, Nicosia OLD, Akar T, Grando S, Al-Yassin A, Bendelkacem A, Thomas WTB et al.. 2011. Determinants of barley grain yield in a wide range of Mediterranean environments. Field Crops Research. 120:169-178.

Forbes AB, Ramage C, Sales J, Baggott D, Donachie W. 2011. Determination of the duration of antibacterial efficacy following administration of gamithromycin using a bovine Mannheimia haemolytica challenge model. Antimicrobial Agents and Chemotherapy. 55:831-835.

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Hepburn CD, Pritchard DW, Cornwall CE, McLeod RJ, Beardall J, Raven JA, Hurd CL. 2011. Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Global Change Biology. 17:2488-2497.

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Jones E, Webb SD, Ruiz-Fons JF, Albon S, Gilbert L. 2011. The effect of landscape heterogeneity and host movement on a tick-borne pathogen. Theoretical Ecology. 4:435-448.

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Raven JA. 2011. Effects on marine algae of changed seawater chemistry with increasing atmospheric CO2. Biology and Environment: Proceedings of the Royal Irish Academy. 111B:1-17.

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Lambe NR, Richardson RI, Macfarlane JM, Nevison I, Haresign W, Matika O, Bunger L. 2011. Genotypic effects of the Texel Muscling QTL (TM-QTL) on meat quality in purebred Texel lambs. Meat Science. 89:125-132.

Rhind SM, Kyle CE, Mackie C, Yates K, Duff EI. 2011. Geographic variation in tissue accumulation of endocrine disrupting compounds (EDCs) in grazing sheep. Environmental Pollution. 159:416-422.

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de Roos B, Wanders AJ, Wood S, Horgan GW, Rucklige G, Reid M, Siebelink E, Brouwer IA. 2011. A high intake of industrial or ruminant trans fatty acids does not affect the plasma proteome in healthy men. Proteomics. 11:3928-3934.

Lochlainn S, Amoah S, Graham NS, Alamer K, Rios JJ, Kurup S, Stoute A, Hammond JP, Ostergaard L, King GJ et al.. 2011. High resolution melt (HRM) analysis is an efficient tool to genotype EMS mutants in complex crop genomes. Plant Methods. 7:1-9.

Russell WR, Gratz SW, Duncan SH, Holtrop G, Ince J, Scobbie L, Duncan G, Johnstone AM, Lobley GE, Wallace RJ et al.. 2011. High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health. American Journal of Clinical Nutrition. 93:1062-1072.

Russell JR, Bayer MM, Booth C, Cardle L, Hackett CA, Hedley PE, Jorgensen L, Morris JA, Brennan RM. 2011. Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum). BMC Plant Biology. 11:147.

Fletcher T, Leonardi G, Hough RL, Goessler W, Gurzau E, Koppova K, Rudnai P, Vahter M. 2011. The impact of exposure metric choice for cancers related to arsenic in drinking water in Central Europe. Epidemiology. 22:S102-S103.

Norici A, Bazzoni AM, Pugnetti A, Raven JA, Giordano M. 2011. Impact of irradiance on the C allocation in the coastal marine diatom Skeletonema marionoi Sarno and Zingone. Plant, Cell and Environment. 34:1666-1677.

Marconi M, Giordano M, Raven JA. 2011. Impact of taxonomy, geography and depth on delta C-13 and delta N-15 variation in a large collection of macroalgae. Journal of Phycology. 47:1023-1035.

Brennan RM, Russell JR, Jorgensen L, Abreu IN, Jarret D, Gordon S, Hackett CA. 2011. Improving breeding efficiency in blackcurrant - the application of new selection techniques in Ribes. Acta Horticulturae. 946:157-160.

Britton AJ, Helliwell RC, Lilly A, Dawson LA, Fisher JM, Coull MC, Ross J. 2011. An integrated assessment of ecosystem carbon pools and fluxes across an oceanic alpine toposequence. Plant and Soil. 345:287-302.

Ramsay L, Comadran J, Druka A, Marshall DF, Thomas WTB, Macaulay M, MacKenzie K, Simpson CG, Fuller J, Bonar N et al.. 2011. INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nature Genetics. 43:169-172.

Gyaneshwar P, Hirsch AM, Moulin L, Chen WM, Elliott GN, Bontemps C, Estrada-de los Santos P, Gross E, dos Reis J, F.B et al.. 2011. Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Molecular Plant-Microbe Interactions. 24:1276-1288.

Haanes H, Roed KH, Perez-Espona S, Rosef O. 2011. Low genetic variation support bottlenecks in Scandinavian red deer. European Journal of Wildlife Research. 57:1137-1150.

Whitfield S, Reed M, Thomson KJ, Christie M, Stringer L, Quin CH, Anderson R, Moxey A, Hubacek K. 2011. Managing peatland ecosystem services: current UK policy and future challenges in a changing world. Scottish Geographical Journal. 127:209-230.

Beleggia R, Platani C, Papa R, Di Chio A, Barros E, Mashaba C, Wirth J, Fammartino A, Sautter C, Conner S et al.. 2011. Metabolomics and food processing: from semolina to pasta. Journal of Agricultural and Food Chemistry. 59:9366-9377.

Rubio-Aliaga I, de Roos B, Duthie SJ, Crosley LK, Mayer C, Horgan GW, Colquhoun IJ, Le Gall G, Huber F, Kremer W et al.. 2011. Metabolomics of prolonged fasting in humans reveals new catabolic markers. Metabolomics. 7:375-387.

Ronfort C, Souchere V, Martin P, Sebillotte C, Castellazzi MS, Barbottin A, Meynard JM, Laignel B. 2011. Methodology for land use change scenario assessment for runoff impacts: A case study in a north-western European Loess belt region (Pays de Caux, France). Catena. 86:36-48.

Comadran J, Russell JR, Booth A, Pswarayi A, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A et al.. 2011. Mixed model association scans of multi-environmental trial data reveal major loci controlling yield and yield related traits in Hordeum vulgare in Mediterranean environments. Theoretical and Applied Genetics. 122:1363-1373.

Caron-Lormier G, Bohan DA, Dye R, Hawes C, Humphry RW, Raybould A. 2011. Modelling an ecosystem: the example of agro-ecosystems. Ecological Modelling. 222:1163-1173.

Grzegorczyk M, Husmeier D, Rahnenfuhrer J. 2011. Modelling non-stationary dynamic gene regulatory processes with the BGM model. Computational Statistics. 26:199-218.

Hugron S, Andersen R, Poulin M, Rochefort L. 2011. Natural plant colonization of borrow pits in boreal forest highlands of eastern Canada. Botany. 89:451-465.

Zhang Z, Rhind SM. 2011. Optimized determination of polybrominated diphenyl ethers and polychlorinated biphenyls in sheep serum by solid-phase extraction-gas chromatography mass spectrometry. Talanta. 84:487-493.

Comadran J, Ramsay L, MacKenzie K, Hayes P, Close TJ, Muehlbauer G, Stein N, Waugh R. 2011. Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theoretical and Applied Genetics. 122:523-531.

Ross HA, Morris WL, Ducreux LJM, Hancock RD, Verrall SR, Morris JA, Tucker GA, Stewart D, Hedley PE, McDougall GJ et al.. 2011. Pectin engineering to modify product quality in potato. Plant Biotechnology Journal. 9:848-856.

Smkal P, Kenicer G, Flavell AJ, Corander J, Kosterin O, Redden RJ, Ford R, Coyne CJ, Maxted M, Ambrose MJ et al.. 2011. Phylogeny, phylogeography and genetic diversity of the Pisum genus. Plant Genetic Resources. 9:4-18.

Andrews M, Edwards GR, Ridgway HJ, Cameron KC, Di HJ, Raven JA. 2011. Positive plant microbial interactions in perennial ryegrass dairy pasture systems. Annals of Applied Biology. 159:79-92.

Ross HA, Wright KM, McDougall GJ, Roberts AG, Chapman SN, Morris WL, Hancock RD, Stewart D, Tucker GA, James EK et al.. 2011. Potato tuber pectin structure is influenced by pectin methyl esterase activity and impacts on cooked potato texture. Journal of Experimental Botany. 62:371-381.

Wojniusz S, Vogele C, Ropstad E, Evans N, Robinson J, Suetterlin S, Erhard HW, Solbakk AK, Endestad T, Oldberg DE et al.. 2011. Prepubertal gonadotropin-releasing hormone analog leads to exagerrated behavioral and emotional sex differences in sheep. Hormones and Behavior. 59:22-27.

DeGabriel JL, Albon SD, Fielding DA, Riach DJ, Westaway S, Irvine RJ. 2011. The presence of sheep leads to increases in plant diversity and reductions in the impact of deer on heather. Journal of Applied Ecology. 48:1269-1277.

Gilroy EM, Breen S, Whisson SC, Squires J, Hein I, Kaczmarek M, Turnbull D, Boevink P, Lokossou A, Cano LM et al.. 2011. Presence/absence, differential expression and sequence polmorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants. New Phytologist. 191:763-776.

Coyle DR, Clark KE, Raffa KF, Johnson SN. 2011. Prior host feeding experience influences ovipositional but not feeding preference in a polyphagous insect herbivore. Entomologia Experimentalis et Applicata. 138:137-145.

Donnelly RE, Katzner T, Gordon IJ, Gompper ME, Redpath S, Garner TWJ, Altwegg R, Reed DH, Acevedo-Whitehouse K, Pettorelli N. 2011. Putting the eco back in ecotourism. Animal Conservation. 14:325-327.

Matthews KB, Rivington M, Blackstock KL, McCrum G, Buchan K, Miller DG. 2011. Raising the bar? The challenge of evaluating the outcomes of environmental modelling and software Environmental Modelling and Software. 26:247-257.

Rojas I, Becerra P, Galvez N, Laker J, Bonacic C, Hester AJ. 2011. Relationship between fragmentation, degradation and native and exotic species richness in an Andean temperate forest in Chile. Gayana Botanica. 68:163-175.

Nazaries L, Tate KR, Ross DJ, Singh J, Dando J, Saggar S, Baggs EM, Millard P, Murrell JC, Singh BK. 2011. Response of methanotrophic communities to afforestation and reforestation in New Zealand. ISME Journal. 5:1832-1836.

Crawfurd KJ, Raven JA, Wheeler GL, Baxter EJ, Joint I. 2011. The response of Thalassiosira pseudonana to long-term exposure to increased CO2 and decreased pH. PLoS ONE. 6:e26995.

Beesley L, Moreno-Jimenez E, Gomez-Eyles JL, Harris E, Robinson B, Sizmur T. 2011. A review of biochars' potential role in the remediation, revegetation and restoration of contaminated soils. Environmental Pollution. 159:3269-3282.

Zhang Z, Rhind SM, Kerr C, Osprey M, Kyle C. 2011. Selective pressured liquid extraction of estrogenic compounds in soil and analysis by gas chromatography - mass spectrometry. Analytica Chimica Acta. 685:29-35.

Zhang Z, Ohiozebau E, Rhind SM. 2011. Simultaneous extraction and clean-up of polybrominated diphenyl ethers and polychlorinated biphenyls from sheep liver tissue by selective pressurized liquid extraction and analysis by gas chromatography - mass spectrometry. Journal of Chromatography A. 1218:1203-1209.

Prager K, Schuler J, Helming K, Zander P, Ratinger T, Hagedorn K. 2011. Soil degradation, farming practices, institutions and policy responses: An analytical framework. Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies.. 22:32-46.

Ceccon C, Panzacchi P, Scandellari F, Prandi L, Ventura M, Russo B, Millard P, Tagliavini M. 2011. Spatial and temporal effects of soil temperature and moisture and the relation to fine root density on root and soil respiration in a mature apple orchard. Plant and Soil. 342:195-206.

Squire GR, Breckling B, Pfeilstetter AD, Jorgensen RB, Lecomte J, Pivard S, Reuter H, Young MW. 2011. Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.

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Subramanian NK, White PJ, Broadley MR, Ramsay G. 2011. The three dimensional distribution of minerals in potato tubers. Annals of Botany. 107:681-691.

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Cook N, Aziz N, Hedley PE, Morris J, Milne L, Karley AJ, Hubbard SF, Russell JR. 2011. Transcriptome sequencing of an ecologically important graminivorous sawfly: a resource for marker development. Conservation Genetics Resources. 3:789-795.

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Mayer KFX, Martis M, Hedley PE, Simkova H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H et al.. 2011. Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell. 23:1249-1263.

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2012

Sutherland LA, Gabriel D, Hathaway-Jenkins L, Pascual U, Schmutz U, Rigby D, Godwin R, Sait S, Sakrabani R, Kunin B et al.. 2012. The 'neighbourhood effect': a multidisciplinary assessment of the case for farmer co-ordination in agri-environmental programmes. Land Use Policy. 29:502-512.

Raven JA. 2012. Algal biogeography: metagenomics shows distribution of a picoplanktonic pelagophyte. Current Biology. 22:R682-R683.

Raven JA, Giordano M, Beardall J, Maberly SC. 2012. Algal evolution in relation to atmospheric CO2: carboxylases, carbon-concentrating mechanisms and carbon oxidation cycles. Philosophical Transactions of the Royal Society, B. 367:493-507.

Spies A, Korzun V, Bayles R, Rajaraman J, Himmelback A, Hedley PE, Schweizer P. 2012. Allele mining in barley genetic resources reveals genes of race-non-specific powdery mildew resistance. Frontiers in Plant Science. 2:113.

Rodriguez-Gutierrez G, Duthie GG, Wood S, Morrice P, Nicol F, Reid M, Cantlay LL, Kelder T, Horgan GW, Fernandez-Bolanos Guzman J et al.. 2012. Alperujo extract, hydroxytyrosol, and 3,4-dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin e-deficient ratsua proteomics and network analysis approach. Molecular Nutrition and Food Research. 56:1131-1147.

Bingham IJ, Karley AJ, White PJ, Thomas WTB, Russell JR. 2012. Analysis of improvements in nitrogen use efficiency associated with 75 years of spring barley breeding. European Journal of Agronomy. 42:49-58.

Rhind SM. 2012. Anthropogenic pollutants - a insidious threat to animal health and productivity? Acta Veterinaria Scandinavica. 54:S2.