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Publications list

Found 1600 results

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2005
Raven JA, Ball LA, Beardall J, Giordano M, Maberly SC.  2005.  Algae lacking carbon concentrating mechanisms. Canadian Journal of Botany. 83:879-890.
Armstrong MR, Whisson SC, Pritchard L, Bos JIB, Venter E, Avrova AO, Rehmany AP, B U, Brooks K, Cherevach I et al..  2005.  An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognised in the host cytoplasm. Proceedings of the National Academy of Sciences, USA. 102:7766-7771. Abstract
Harrison BD, Robinson DJ.  2005.  Another quarter century of great progress in understanding the biological properties of plant viruses. Annals of Applied Biology. 146:15-37. Abstract
Hetherington AM, Raven JA.  2005.  The biology of carbon dioxide. Current Biology. 15:406-410.
Kumar PL, Latha TKS, Kulkarni NK, Raghavendra N, Saxena KB, Waliyar F, Rangaswamy KT, Muniyappa V, Doriswamy S, Jones AT.  2005.  Broad-based resistance to pigeonpea sterility mosaic disease in wild relatives of pigeonpea (Cajanus: Phaseoleae). Annals of Applied Biology. 146:371-379. Abstract
Raven JA.  2005.  Cellular location of starch synthesis and evolutionary origin of starch genes. Journal of Phycology. 41:1070-1072. Abstract
Molina-Cano J-L, Russell JR, Moralejo MA, Escacena JL, Arias G, Powell W.  2005.  Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics. 110:613-619.
Giordano M, Beardall J, Raven JA.  2005.  CO2 concentrating mechanisms in algae: mechanisms, environmental modulation and evolution. Annual Review of Plant Biology. 56:99-131. Abstract
Woodhead M, Russell JR, Squirrell J, Hollingsworth PM, MacKenzie K, Gibby M, Powell W.  2005.  Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Molecular Ecology. 14:1681-1695. Abstract
Choi SK, Palukaitis P, Min BE, Lee MY, Choi JK, Ryu KH.  2005.  Cucumber mosaic virus 2a polymerase and 3a movement proteins independently affect both virus movement and the timing of symptom development in zucchini squash. Journal of General Virology. 86:1213-1222. Abstract
Rehmany AP, Gordon A, Rose LE, Allen RL, Armstrong MR, Whisson SC, Kamoun S, Tyler BM, Birch PRJ, Beynon JL.  2005.  Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines. Plant Cell. 17:1839-1850. Abstract
Bohan DA, Boffey CWH, Brooks DR, Clark SJ, Dewar AM, Firbank LG, Haughton AJ, Hawes C, Heard MS, May MJ et al..  2005.  Effects on weed and invertebrate abundance and diversity of herbicide management in genetically modified herbicide-tolerant winter-sown oilseed rape. Proceedings of the Royal Society of London, Series B. 272:463-474. Abstract
Raven JA, Andrews M, Quigg A.  2005.  The evolution of oligotrophy: implications for the breeding of crop plants for low input agricultural systems. Annals of Applied Biology. 146:261-280. Abstract
Andrews M, Maule HG, Raven JA, Mistry A.  2005.  Extension growth of Impatiens glandulifera at low irradiance: importance of nitrate and potassium accumulation. Annals of Botany. 95:641-648. Abstract
Rangel-Castro JI, Prosser JI, Ostle N, Scrimgeour CM, Killham K, Meharg AA.  2005.  Flux and turnover of fixed carbon in soil microbial biomass of limed and un-limed plots of an upland grassland ecosystem. Environmental Microbiology. 7:544-552. Abstract
Naglreiter C, Reichenauer TG, Goodman BA, Bolh HR.  2005.  Free radical generation in Pinus sylvestris and Larix decidua seeds primed with polyethylene glycol or potassium salt solutions. Plant Physiology and Biochemistry. 43:117-123. Abstract
Chen Q, Rehman S, Smant G, Jones JT.  2005.  Functional analysis of pathogenicity proteins of the potato cyst nematode Globodera rostochiensis using RNAi. Molecular Plant-Microbe Interactions. 18:621-625. Abstract
Pritchard L, Corne D, Kell D, Rowland J, Winson M.  2005.  A general model of error-prone PCR. Journal of Theoretical Biology. 234:497-509. Abstract
Rostoks N, Mudie S, Cardle L, Russell JR, Ramsay L, Booth A, Svensson JT, Wanamaker SI, Walia H, Rodriguez EM et al..  2005.  Genome wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics. 274:515-527springerlink.com/content/7625g78880706u6m/fulltext.pdf. Abstract
Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR, Powell W.  2005.  Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract
Granum E, Raven JA, Leegood RC.  2005.  How do marine diatoms fix 10 billion tonnes of inorganic carbon per year? Canadian Journal of Botany - Review Canadienne de Botanique. 83:898-908. Abstract
Randall TA, Dwyer RA, Huitema E, Beyer K, Cvitanich C, Kelkar H, Ah Fong AMV, Gates K, Roberts S, Yatzkan E et al..  2005.  Large-scale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi. Molecular Plant-Microbe Interactions. 18:229-243. Abstract
Castelli L, Bryan GJ, Blok VC, Ramsay G, Phillips MS.  2005.  Life stage responses observed amongst fifteen wild Solanum species to resistant Globodera pallida. Nematology. 7:701-711. Abstract
Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al..  2005.  Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
Chapman S, Oparka KJ, Roberts AG.  2005.  New tools for in vivo fluorescence tagging. Current Opinion in Plant Biology. 8:565-573. Abstract
Pemberton CL, Whitehead NA, Sebaihia M, Bell KS, Hyman LJ, Harris SJ, Matlin AJ, Robson ND, Birch PRJ, Carr JP et al..  2005.  Novel quorum sensing-controlled genes in Erwinia carotovora subsp. carotovora: identification of a fungal elicitor homologue in a soft-rotting bacterium. Molecular Plant-Microbe Interactions. 18:343-353. Abstract
Haupt S, Stroganova T, Ryabov E, Kim S-H, Fraser G, Duncan G, Mayo M, Barker H, Taliansky ME.  2005.  Nucleolar localisation of Potato leafroll virus capsid proteins. Journal of General Virology. 86:2891-2896. Abstract
Ramsay G, Griffiths DW, Deighton N.  2005.  Patterns of solanidine glycoalkaloid variation in four gene pools of the cultivated potato. Genetic Resources and Crop Evolution. 51:805-813. Abstract
Raven JA, Finkel ZV, Irwin AJ.  2005.  Picophytoplankton: bottom-up and top-down controls on ecology and evolution. Vie et Milieu - Life and Environment. 55:209-215. Abstract
Saari SK, Campbell CD, Russell JR, Alexander IJ, Anderson IC.  2005.  Pine microsatellite markers allow roots and ectomycorrhizas to be linked to individual trees. New Phytologist. 165:295-304. Abstract
Jones AT, Cowan GH, McGavin WJ, Roberts IM, Torrance L.  2005.  Production and properties of monoclonal antibodies to Solanum nodiflorum mottle sobemovirus. Annals of Applied Biology. 146:321-325. Abstract
Raven JA.  2005.  Q&A - John Raven. Current Biology. 15:R905-R906. Abstract
Beardall J, Roberts S, Raven JA.  2005.  Regulation of inorganic carbon acquisition by phosphorus limitation in the green alga Chorella emersonii. Canadian Journal of Botany - Review Canadienne de Botanique. 83:859-864. Abstract
Humphris SN, Bengough AG, Griffiths BS, Killham K, Rodger S, Stubbs V, Valentine TA, Young IM.  2005.  Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize. FEMS Microbiology Ecology. 54:123-130. Abstract
Spooner DM, McLean K, Ramsay G, Waugh R, Bryan GJ.  2005.  A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping. Proceedings of the National Academy of Sciences, USA. 102:14694-14699. Abstract
Rostoks N, Borevitz JO, Hedley PE, Russell JR, Mudie S, Morris J, Cardle L, Marshall DF, Waugh R.  2005.  Single feature polymorphism discovery in the barley transcriptome. Genome Biology. 6:-R54. Abstract
Rangel-Castro JI, Killham K, Ostle N, Nicol GW, Anderson IC, Scrimgeour CM, Ineson P, Meharg A, Prosser JI.  2005.  Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
Lee L, Kaplan IB, Ripoll DR, Liang D, Palukaitis P, Gray SM.  2005.  A surface loop of the potato leafroll virus coat protein is involved in virion assembly, systemic movement and aphid transmission.. Journal of Virology. 79:1207-1214. Abstract
Haupt S, Cowan GH, Ziegler A, Roberts AG, Oparka KJ, Torrance L.  2005.  Two plant-viral movement proteins traffic in the endocytic recycling pathway. Plant Cell. 17:164-181. Abstract
Bradshaw JE, Ramsay G.  2005.  Utilisation of the Commonwealth Potato Collection in potato breeding. Euphytica. 146:9-19. Abstract
2006
Beale CM, Burfield IJ, Sim IMW, Rebecca GW, Pearce-Higgins JW, Grant MC.  2006.  Climate change may account for the decline in British ring ouzels Turdus torquatus. Journal of Animal Ecology. 75(3):826-835.
Redpath SM, Leckie F, Arroyo B, Amar A, Thirgood, S.J.; Redpath S.  2006.  Compensating for the costs of polygyny in hen harriers. Behavioural Ecology and Sociobiology. 60(3):386-391.
van Beinum WG, Meeussen JCL, van Riemsdijk WH.  2006.  Competitive sorption and diffusion of chromate and sulphate in a flow system with goethite in gel beads. Journal of Contaminant Hydrology. 86(3-4):262-278.
Lynn A, Collins A, Fuller Z, Hillman K, Ratcliffe B.  2006.  Cruciferous vegetables and colo-rectal cancer. Proceedings of the Nutrition Society. 65(1):135-144.
Rosen K, Shand CA, Haak E, Cheshire MV.  2006.  Effect of clay content and wetting and drying on radiocaesium behaviour in a peat and peaty podzol. The Science of the Total Environment. 368(2-3):795-803.
Nielsen UN, Riis T, Brix H.  2006.  The effect of weed cutting on Luronium natans. Aquatic Conservation: Marine and Freshwater Ecosystems. 16(4):409-417.
Lea RG, Pinto de Andrade L, Rae MT, Hannah LT, Kyle CE, Murray JF, Rhind SM, Miller DW.  2006.  Effects of maternal undernutrition during early pregnancy on apoptosis regulators in the ovine fetal ovary. Reproduction. 131(1):113-124.
Shafi S, Sweetman A, Hough RL, Smith R, Rosevear A, Pollard SJT.  2006.  Evaluating fugacity models for trace components in landfill gas. Environmental Pollution. 144:1013-1023.
Rivington M, Matthews KB, Buchan K, Bellocchi G.  2006.  Evaluating uncertainty introduced to process-based simulation model estimates by alternative sources of meteorological data. Agricultural Systems. 88(2-3):451-461.
Evans CD, Reynolds B, Jenkins A, Helliwell RC, Curtis CJ, Goodale CL, Ferrier RC, Emmett BA, Pilkington M, Caporn SJM et al..  2006.  Evidence that soil carbon pool determines susceptibility of semi-natural ecosystems to elevated nitrogen leaching. Ecosystems. 9(3):453-462.
Foereid B, Dawson LA, Johnson D, Rangel-Castro I.  2006.  Fate of carbon in upland grassland subjected to liming using in situ (CO2)-C-13 pulse-labelling. Plant and Soil. 287(1-2):301-311.
Vinten AJA, Donnelly S, Ball BC, Brewster J, Crawford CE, Ritchie RM, Parker JP.  2006.  A field trial to evaluate the pollution potential to ground and surface waters from woodchip corrals for overwintering livestock outdoors. Soil Use and Management. 22(1):82-94.
Kent M, Moyeed RA, Reid CL, Pakeman RJ, Weaver R.  2006.  Geostatistics, spatial rate of change analysis and boundary detection in plant ecology and biogeography. Progress in Physical Geography. 30(2):201-231.
McNamara NP, Chamerlain PM, Pierce TG, Sleep D, Black HIJ, Reay DS, Ineson P.  2006.  Impact of water table depth on forest soil methane turnover in laboratory soil cores deduced from natural abundance and tracer 13C stable isotope experiments. Isotopes in Environmental and Health Studies. 42(4):379-390.
Rivington M, Matthews KB, Bellocchi G, Buchan K, Stockle CO, Donatelli M.  2006.  An integrated assessment approach to conduct analyses of climate change impacts on whole-farm systems. Environmental Modelling Software. 22(2):202-210.
Singh BK, Munro S, Reid E, Ord B, Potts JM, Paterson E, Millard P.  2006.  Investigating microbial community structure in soils by physiological, biochemical and molecular fingerprinting methods. European Journal of Soil Science. 57:72-82.
Evans DM, Redpath SM, Evans SA, Elston DA, Gardner CJ, Dennis P, Pakeman RJ.  2006.  Low intensity, mixed livestock grazing improves the breeding abundance of a common insectivorous passerine. Biology Letters. 2(4):636-638.
Mills A, Morkel P, Runyoro V, Amiyo A, Borner M, Thirgood SJ.  2006.  Managing small populations in practice: black rhino in the Ngorongoro Crater, Tanzania. Oryx. 40(3):319-323.
Wright RF, Aherne J, Bishop K, Camarero L, Cosby BJ, Erlandsson M, Evans CD, Forsius M, Hardekopf H, Helliwell RC et al..  2006.  Modelling the effect of climate change on recovery of acidified freshwaters: relative sensitivity of individual processes in the MAGIC model. The Science of the Total Environment. 365(1-3):154-166.
Kok K, Patel M, Rothman DS, Quaranta G.  2006.  Multi-scale narratives from an IA perspective: Part II. Participatory local scenario development. Futures. 38(3):285-311.
Robertson E, Gordon IJ, Perez-Barberia FJ.  2006.  Preferences of sheep and goats for straw pellets treated with different food-flavouring agents. Small Ruminant Research. 63(1-2):50-57.
Roumet C, Cochard C, Dawson LA, Joffre R, Mayes RW, Brewer M, Blanchard M.  2006.  Quantifying species composition in root mixtures using two methods: near-infrared reflectance spectroscopy and plant wax markers. New Phytologist. 170(3):631-638.
Courtney P, Hill GW, Roberts D.  2006.  The role of natural heritage in rural development: an analysis of economic linkages in Scotland. Journal of Rural Studies. 22(4):469-484.
Soulsby C, Tetzlaff D, Rodgers P, Dunn S, Waldron S.  2006.  Runoff processes, stream water residence times and controlling landscape characteristics in a mesoscale catchment: an initial evaluation. Journal of Hydrology. 325(1-4):197-221.
Omer RM, Hester AJ, Gordon IJ, Swaine MD, Raffique SM.  2006.  Seasonal changes in pasture biomass, production and offtake under the transhumance system in northern Pakistan. Journal of Arid Environments. 67(4):641-660.
Ramos JA, Bugalho MN, Cortez P, Iason GR.  2006.  Selection of trees for rubbing by red and roe deer in forest plantations. Forest Ecology and Management. 222(1-3):39-45.
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser J, Wheateley R, McNicol J, Millard P.  2006.  Sheep urine deposition is a source of heterogeneity in upland grassland soil microbial community structure. FEMS Microbiology Ecology. 56(2):310-320.
Evans D, Redpath S, Elston DA, Evans S, Mitchell R, Dennis P.  2006.  To graze or not to graze? Sheep, voles, forestry and nature conservation in the British uplands Journal of Applied Ecology. 43(3):499-505.
Duncan AJ, Rahman A, Miller DW, Frutos P, Gordon IJ, Rehman A, Baig A, Ali F, Wright IA.  2006.  Transhumance livestock production in the Northern Areas of Pakistan: nutritional inputs and productive outputs. Agriculture, Ecosystems and Environment. 117(2-3):195-204.
Rowe EC, Evans CD, Emmett BA, Reynolds B, Helliwell RC, Curtis CJ, Coull MC.  2006.  Vegetation type affects the relationship between soil carbon to nitrogen ratio and nitrogen leaching. Water Air and Soil Pollution. 177(1-4):335-347.
Meharg AA, Deacon C, Edwards KJ, Donaldson M, Davidson DA, Spring C, Scrimgeour CM, Feldmann J, Rabb A.  2006.  Ancient manuring practices pollute arable soils at the St Kilda World Heritage Site, Scottish North Atlantic. Chemosphere. 64:1818-1828. Abstract
Raven JA.  2006.  Aquatic viruses: the emerging story. Journal of the Marine Biological Association of the United Kingdom. 86:449-451. Abstract
Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A et al..  2006.  An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics. 6:202-211. Abstract
Rostoks N, Schmierer D, Mudie S, Drader T, Brueggeman R, Caldwell DG, Waugh R, Kleinhofs A.  2006.  Barley necrotic locus nec1 encodes the cyclic nucleotide-gated ion channel 4 homologous to the Arabidopsis HLM1. Molecular Genetics and Genomics. 275:159-168. Abstract
Raven JA, Karley AJ.  2006.  Carbon sequestration: Photosynthesis and subsequent processes. Current Biology. 16:R165-R167. Abstract
Raven JA, Beardall J.  2006.  Chorophyll fluorescence and ecophysiology: seeing red? New Phytologist. 169:449-451. Abstract
van Os H, Andrzejewski S, Bakker E, Barrena I, Bryan GJ, Caromel B, Ghareeb B, Isidore E, De Jong W, van Koert P et al..  2006.  Construction of a 10,000 marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and genomewide physical map. Genetics. 173:1075-1087. Abstract
George TS, Turner BL, Gregory PJ, Cade-Menun BJ, Richardson AE.  2006.  Depletion of organic phosphorus from Oxisols in relation to phosphatase activities in the rhizosphere. European Journal of Soil Science. 57:47-57. Abstract
de Felipe P, Luke GA, Hughes LE, Gani D, Halpin C, Ryan MD.  2006.  E unum pluribus: multiple proteins from a self-processing polyprotein. Trends in Biotechnology. 24:68-75. Abstract
Murillo-Amador B, Jones HG, Kaya C, Aguilar RL, Garcia-Hernandez JL, Troyo-Di E, Avila-Serrano NY, Rueda-Puente E.  2006.  Effects of foliar application of calcium nitrate on growth and physiological attributes of cowpea (Vigna unguiculata L.Walp.) grown under salt stress. Environmental and Experimental Botany. 58:188-196.
Firbank LG, Rothery P, May MJ, Clark SJ, Scott RJ, R.C. S, Boffey CWH, Brooks DR, Champion GT, Haughton AJ et al..  2006.  Effects of genetically modified herbicide-tolerant cropping systems on weed seedbanks in two years of following crops. Biology Letters. 2:140-143. Abstract
Heard MS, Clark SJ, Rothery P, Perry JN, Bohan DA, Brooks DR, Champion GT, Dewar AM, Hawes C, Haughton AJ et al..  2006.  Effects of successive seasons of genetically modified herbicide-tolerant maize cropping on weeds and invertebrates. Annals of Applied Biology. 149:249-254. Abstract
Caldwell KS, Russell JR, Langridge P, Powell W.  2006.  Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics. 172:557-567. Abstract
Cacciola SO, Pane A, Cooke DEL, Raudino F, Magnano di San Lio G.  2006.  First report of brown rot and wilt of fennel caused by Phytophthora megasperma in Italy. Plant Disease. 90:-110. Abstract
Kuan HL, Fenwick C, Glover LA, Griffiths BS, Ritz K.  2006.  Functional resilience of microbial communities from perturbed upland grassland soils to further persistent or transient stresses. Soil Biology & Biochemistry. 38:2300-2306. Abstract
Montechiaro F, Hirschmugl CJ, Raven JA, Giordano M.  2006.  Homeostasis of cell composition during prolonged darkness. Plant Cell and Environment. 29:2198-2204. Abstract
Feeney D, Hallett PD, Rodger S, Bengough AG, White NA, Young IM.  2006.  Impact of fungal and bacterial biocides on microbial induced water repellency in arable soil. Geoderma. 135:72-80. Abstract
Kevekordes K, Holland D, H N, Jenkins S, Kos R, Roberts S, Raven JA, Scrimgeour CM, Shelly K, Stojkovic S et al..  2006.  Inorganic carbon acquisition by eight species of Caulerpa (Caulerpaceae, Chlorophyta). Phycologia. 45:442-449. Abstract
Nunan N, Ritz K, Rivers M, Feeney D, Young IM.  2006.  Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract
Castelli L, Bryan GJ, Blok VC, Ramsay G, Sobczak M, Gillespie T, Phillips MS.  2006.  Investigations of Globodera pallida invasion and syncytia formation within roots of the susceptible potato cultivar D. Nematology. 8:103-110. Abstract
Finkel ZV, Quigg A, Raven JA, Reinfelder JR, Schofield OE, Falkowski PG.  2006.  Irradiance and the elemental stoichiometry of marine phytoplankton. Limnology and Oceanography. 51:2690-2701. Abstract
Quigg A, Kevekordes K, Raven JA, Beardall J.  2006.  Limitations on microalgal growth at very low photon fluence rates: the role of energy slippage. Photosynthesis Research. 88:299-310. Abstract
Kilminster KL, Walker DI, Thompson PA, Raven JA.  2006.  Limited nutritional benefit to the seagrass Halophila ovalis, in culture, following sediment organic matter enrichment. Estuarine Coastal and Shelf Science. 68:675-685. Abstract
Collazo C, Ramos PL, Chacon O, Borroto CJ, Lopez Y, Pujol M, Thomma BPHJ, Hein I, Borras-Hidalgo O.  2006.  Phenotypical and molecular characterization of Tomato mottle Taino virus - Nicotiana megalosiphon interaction. Physiological and Molecular Plant Pathology. 67:231-236. Abstract
McCue KF, Allen PV, Shepherd LVT, Blake A, Whitworth JL, Maccree MM, Rockhold DR, Stewart D, Davies HV, Belknap WR.  2006.  The primary in vivo steroidal alkaloid glucosyltransferase from potato. Phytochemistry. 67:1590-1597. Abstract
Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat PR, Roose ML, Svensson JT, Stein N, Varshney RK, Marshall DF et al..  2006.  Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, USA. 103:18656-18661. Abstract
Andrews M, Raven JA, Lea PJ, Sprent JI.  2006.  A role for shoot protein in shoot-root dry matter allocation in higher plants. Annals of Botany. 97:3-10. Abstract
Bengough AG, Bransby MF, Hans J, McKenna SJ, Roberts TJ, Valentine TA.  2006.  Root responses to soil physical conditions; growth dynamics from field to cell. Journal of Experimental Botany. 57:437-447. Abstract
Raven JA.  2006.  Sensing inorganic carbon: C02 and HCO3. Biochemical Journal. 396:e5-e7.
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser JI, Wheatley RE, McNicol JW, Millard P.  2006.  Sheep-urine-induced changes in soil microbial community structure. FEMS Microbiology Ecology. 56:310-320. Abstract
Feeney D, Crawford JW, Daniell TJ, Hallett PD, Nunan N, Ritz K, Rivers M, Young IM.  2006.  Three-dimensional microorganisation of the soil-root-microbe system. Microbial Ecology. 52:151-158. Abstract
Gregorich EG, Rochette P, Hopkins DW, McKim UF, St-Georges P.  2006.  Tillage-induced environmental conditions in soil and substrate limitation determine biogenic gas production. Soil Biology & Biochemistry. 38:2614-2628. Abstract
Edwards D, Li CS, Raven JA.  2006.  Tracheids in an early vascular plant: a tale of two branches. Botanical Journal of the Linnean Society. 150:115-130. Abstract
Birch PRJ, Rehmany AP, Pritchard L, Kamoun S, Beynon JL.  2006.  Trafficking arms: oomycete effectors enter host plant cells. Trends in Microbiology. 14:8-11. Abstract
Richter A, Jacobsen H-J, de Kathen A, de Lorenzo G, Briviba K, Hain R, Ramsay G, Kiesecker H.  2006.  Transgenic peas (Pisum sativum) expressing polygalacturonase inhibiting protein from raspberry (Rubus idaeus) and stilbene synthase from grape (Vitis vinifera). Plant Cell Reports. 25:1166-1173. Abstract
Cacciola SO, Spica D, Cooke DEL, Raudino F, San Lio GMD.  2006.  Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract
2007
Matthews RB, Gilbert N, Roach A, Polhill JG, Gotts NM.  2007.  Agent-based land use models: a review of applications. Landscape Ecology. 22(10):1447-1459.
Wright AJ, Soto NA, Baldwin AL, Bateson M, Beale CM, Clark C, Deak T, Edwards EF, Fernandez A, Godinho A et al..  2007.  Anthropogenic noise as a stressor in animals: a multidisciplinary perspective. International Journal of Comparative Psychology. 20:250-273.
Tingem M, Rivington M, Azam-Ali S, Colls J.  2007.  Assessment of the ClimGen stochastic weather generator at Cameroon sites. African Journal of Environmental Science and Technology. 1:86-92.
Mitchell RJ, Campbell CD, Chapman SJ, Osler GHR, Vanbergen AJ, Ross LC, Cameron CM, Cole L.  2007.  The cascading effects of birch on heather moorland: a test for the top-down control of an ecosystem engineer. Journal of Ecology. 95(3):540-554.
Kay D, Edwards AC, Ferrier RC, Francis C, Kay C, Rushby L, Watkins J, McDonald AT, Wyer M, Crowther J et al..  2007.  Catchment microbial dynamics: the emergence of a research agenda. Progress in Physical Geography. 31(1):59-76.
Sullivan PF, Sommerkorn M, Rueth HM, Nadelhoffer KJ, Shaver GR, Welker JM.  2007.  Climate and species affect fine root production with long-term fertilization in acidic tussock tundra near Toolik Lake, Alaska. Oecologia. 153(3):643-652.
Robinson DT, Brown DG, Parker DC, Schreinemachers P, Janssen MA, Huigen M, Wittmer H, Gotts NM, Promburom P, Irwin E et al..  2007.  Comparison of empirical methods for building agent-based models in land use science. Journal of Land Use Science. 2(1):31-55.
Young J, Richards C, Fischer A, Halada L, Kull T, Kuzniar A, Tartes U, Uzunov Y, Watt A.  2007.  Conflicts between biodiversity conservation and human acivities in the CEEC. Ambio. 36(7):545-550.
Irvine RJ, Leckie F, Redpath SM.  2007.  Cost of carrying radio transmitters: a test with racing pigeons Columbia livia. Wildlife Biology. 13(3):238-243.
Wright AJ, Soto NA, Baldwin AL, Bateson M, Beale CM, Clark C, Deak T, Edwards EF, Fernandez A, Godinho A et al..  2007.  Do marine mammals experience stress related to anthropogenic noise? International Journal of Comparative Psychology. 20:250-273.
Rungapamestry V, Duncan AJ, Fuller Z, Ratcliffe B.  2007.  Effect of meal composition and cooking duration on the fate of sulforaphane following consumption of broccoli by healthy human subjects. British Journal of Nutrition.. 97:644-652.
Fraser MD, Davies DA, Wright IA, Vale JE, Nute GR, Hallett KG, Richardson RI.  2007.  Effect on upland beef production of incorporating winter feeding of red clover silage or summer grazing of Molinia-dominated semi-natural pastures. Grass and Forage Science. 62(3):284-300.
Rhind SM, Kyle CE, Mackie C, Telfer G.  2007.  Effects of exposure of ewes to sewage sludge-treated pasture on phthalate and alkyl phenol concentrations in their milk. The Science of the Total Environment. 383(1-3):70-80.
Blackstock KL, Richards C.  2007.  Evaluating stakeholder involvement in river basin planning: a Scottish case study. Water Policy. 9(5):493-512.
Omer RM, Hester AJ, Gordon IJ, Raffique SM, Swaine MD.  2007.  Impact of communication infrastructure development on livestock density and forage use under the transhumance system in northern Pakistan. Outlook on Agriculture. 36(1):21-27.
Fuller Z, Louis P, Mihajlovski A, Rungapamestry V, Ratcliffe B, Duncan AJ.  2007.  Influence of cabbage processing methods and pre-biotic manipulation of colonic microflora on glucosinolate breakdown in vivo. British Journal of Nutrition. 98:364-372.
Reeves AD, Kirk EA, Blackstock KL.  2007.  The limitations of regulatory science in the effective control of diffuse pollution. Law, Science and Policy. 3:123-156.
Hyatt M, Gopalakrishnan GS, Bispham J, Gentili S, McMillen IC, Rhind SM, Rae MT, Kyle CE, Brooks AN, Jones C et al..  2007.  Maternal nutrient restriction in early pregnancy programmes hepatic mRNA expression of growth related genes and liver size in adult male sheep. Journal of Endocrinology. 192(1):87-97.
Tate KR, Ross DJ, Saggar S, Hedley CB, Dando J, Singh BK, Lamb SJ.  2007.  Methane uptake in soils from Pinus radiata plantations, a reverting shrubland and adjacent pastures: effects of land-use change, and soil texture, water and mineral nitrogen. Soil Biology and Biochemistry. 39(7):1437-1449.
McDonnell JJ, Sivapalan M, Vache K, Dunn S, Grant G, Haggerty R, Hinz C, Hooper R, Kirchner J, Roderick M et al..  2007.  Moving beyond heterogeneity and process complexity: A new vision for watershed hydrology. Water Resources Research. 43(7):W07301.
Szubert J, Reiff C, Thorburn AP, Singh BK.  2007.  REMA: A computer-based mapping tool for analysis of restriction sites in multiple DNA sequences. Journal of Microbiological Methods. 69(2):411-413.
Helliwell RC, Coull MC, Evans CD, Davies JJL, Norris D, Ferrier RC, Jenkins A, Reynolds B.  2007.  The role of catchment characteristics in determining surface water nitrogen in four upland regions in the UK. Hydrology and Earth System Sciences. 11(1):356-371.
Matthiopoulos J, Graham K, Smout S, Asseburg C, Redpath S, Thirgood SJ, Hudson P, Harwood J.  2007.  Sensitivity to assumptions in models of generalist predation on a cyclic prey. Ecology. 88(10):2576-2586.
Helliwell RC, Davies JJL, Jenkins A, Evans CD, Coull MC, Reynolds B, Norris D, Ferrier RC.  2007.  Spatial and seasonal variations in nitrogen leaching and acidity across four acid-impacted regions of the UK. Water, Air and Soil Pollution. 185(1-4):3-19.
Gaston KJ, Davies RC, David C, Orme L, Olson VA, Thomas GH, Ding TS, Rasmussen PC, Lennon JJ, Bennett PM et al..  2007.  Spatial turnover in the global avifauna. Proceedings of the Royal Society of London, B. 274(1618):1567-1574.
Kirk EA, Reeves AD, Blackstock KL.  2007.  Understanding environmental regulation: disciplinary interactions and path dependency. Environment and Planning C. 25:250-268.
Perez-Barberia FJ, Robertson E, Soriguer R, Aldezabal A, Mendizabal M.  2007.  Why polygynous ungulates segregate in space? Testing the activity budget hypothesis in Soay sheep Ecological Monographs. 77(4):631-647.
George TS, Simpson RJ, Hadobas PA, Marshall DJ, Richardson AE.  2007.  Accumulation and phosphatase-lability of organic phosphorus in fertilised pasture soils. Australian Journal of Agricultural Research. 58:47-55. Abstract
Kr E, Tups A, Archer ZA, Ross AW, Moar KM, Bell LM, Duncan JS, Mayer CD, Morgan PJ, Mercer JG et al..  2007.  Altered expression of SOCS3 in the hypothalamic arcuate nucleus during seasonal body mass changes in the field vole, Microtus agrestis. Journal of Neuroendocrinology. 19:83-94. Abstract
Ross HA, McDougall GJ, Stewart D.  2007.  Antiproliferative activity is predominantly associated with ellagitannins in raspberry extracts. Phytochemistry. 68:218-228. Abstract
Raven JA.  2007.  Astrobiology: Photosynthesis in watercolours. Nature. 448:-418.
Ravensdale M, Blom TJ, Gracia-Garza JA, Svircev AM, Smith RJ.  2007.  Bacteriophages and the control of Erwinia carotovora subsp. carotovora. Canadian Journal of Plant Pathology. 29:121-130.
Roberts K, Granum E, Leegood RC, Raven JA.  2007.  C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control. Plant Physiology. 145:230-235. Abstract
Kim S-H, Ryabov EV, Kalinina N, Rakitina DV, Gillespie T, MacFarlane SA, Haupt S, Brown JWS, Taliansky ME.  2007.  Cajal bodies and the nucleolus are required for a plant virus systemic infection. EMBO Journal. 26:2169-2179. Abstract
Roberts AMI, Theobold CM, McNeil M.  2007.  Calibration of quantitative PCR assays. Journal of Agricultural Biological and Environmental Statistics. 12:364-378. Abstract
Roberts K, Granum E, Leegood RC, Raven JA.  2007.  Carbon acquisition by diatoms. Photosynthesis Research. 93:79-88. Abstract
Reavy B, Bagirova S, Chichkova NV, Fedoseeva SV, Kim S-H, Vartapetian AB, Taliansky ME.  2007.  Caspase-resistant VirD2 protein provides enhanced gene delivery and expression in plants. Plant Cell Reports. 26:1215-1219. Abstract
Coates EM, Popa G, Gill CIR, McCann M, McDougall GJ, Stewart D, Rowland I.  2007.  Colon-available raspberry extract exhibit anti-cancer effects on in vitro models of colon cancer. Proceedings of the Nutrition Society. 66:67A-67A.
Coates EM, Popa G, Gill CIR, McCann MJ, McDougall GJ, Stewart D, Rowland I.  2007.  Colon-available raspberry polyphenols exhibit anti-cancer effects on in vitro models of colon cancer. Journal of Carcinogenesis. 6:1-13. Abstract
Jones MR, Leith ID, Fowler D, Raven JA, Sutton MA, Nemitz E, Cape JN, Sheppard LJ, Smith RI, Theobold MR.  2007.  Concentration-dependent NH3 deposition processes for mixed moorland semi-natural vegetation. Atmospheric Environment. 41:2049-2060. Abstract
Jones MR, Leith ID, Fowler D, Raven JA, Sutton MA, Nemitz E, Cape JN, Sheppard LJ, Smith RI.  2007.  Concentration-dependent NH3 deposition processes for stomatal and non-stomatal moorland species. Atmospheric Environment. 41:8990-8994. Abstract
Sakvarelidze L, Tao Z, Bush M, Roberts GR, Leader DJ, Doonan JH, Rawsthorne S.  2007.  Coupling the GAL4 UAS system with alcR for versatile cell type-specific chemically inducible gene expression in Arabidopsis. Plant Biotechnology Journal. 5:465-476. Abstract
Beerling DJ, Hewitt CN, Pyle JA, Raven JA.  2007.  Critical issues in trace gas biogeochemistry and global change. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1629-1642. Abstract
Valentine TA, Randall E, Wypijewski K, Chapman S, Jones JT, Oparka KJ.  2007.  Delivery of macromolecules to plant parasitic nematodes using a tobacco rattle virus vector. Plant Biotechnology Journal. 5:827-834. Abstract
Woodhead M, Russell JR, Squirrell J, Hollingsworth PM, Cardle L, Gibby M, Powell W.  2007.  Development of EST-derived microsatellite markers for Arabidopsis lyrata subspecies petraea (L.). Molecular Ecology Notes. 7:631-634. Abstract
George TS, Simpson RJ, Gregory PJ, Richardson AE.  2007.  Differential interaction of Aspergillus niger and Peniophora lycii phytases with soil particles affects the hydrolysis of inositol phosphates. Soil Biology & Biochemistry. 39:793-803. Abstract
Griffiths DW, Dale MFB, Morris WL, Ramsay G.  2007.  Effects of season and postharvest storage on the carotenoid content of Solanum phureja potato tubers. Journal of Agricultural and Food Chemistry. 55:379-385. Abstract
Ravirala RS, Barabote RD, Wheeler DM, Reverchon S, Tatum O, Malouf J, Liu H, Pritchard L, Hedley PE, Birch PRJ et al..  2007.  Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract
Usher KM, Bergman B, Raven JA.  2007.  Exploring cyanobacterial mutualisms. Annual Review of Ecology Evolution and Systematics. 38:255-273. Abstract
Farmer NL, Ruffell A, Meier-Augenstein W, Meneely J, Kalin RM.  2007.  Forensic analysis of wooden safety matches - a case study. Science and Justice. 47:88-98. Abstract
Ramsey JS, Wilson ACC, de Vos M, Sun Q, Tamborindeguy C, Winfield A, Malloch G, Smith DM, Fenton B, Gray SM et al..  2007.  Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design. BMC Genomics. 8:-423. Abstract
Varshney RK, Marcel TC, Ramsay L, Russell JR, R MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A.  2007.  A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics. 114:1091-1103. Abstract
Eaton SL, Rocchi M, Gonz L, Hamilton S, Finlayson J, Sales J, Jeffrey M, Steele PJ, Dagliesh MP, Rodger SM et al..  2007.  Immunological differences between susceptible and resistant sheep during the preclinical phase of scrapie infection. Journal of General Virology. 88:1384-1391. Abstract
Kim S-H, MacFarlane SA, Kalinina NO, Rakitina DV, Ryabov E, Gillespie T, Haupt S, Brown JWS, Taliansky ME.  2007.  Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.
Rommens CM, Haring MA, Swords K, Davies HV, Belknap WR.  2007.  The intragenic approach as a new extension to traditional plant breeding. Trends in Plant Science. 12:397-403. Abstract
Andrews M, Raven JA, Sprent JI, Lea PJ.  2007.  Is shoot growth correlated to leaf protein concentration? Trends in Plant Science. 12:531-532. Abstract
Gibson T, Blok VC, Phillips MS, Hong G, Kumarasinghe D, Riley IT, Dowton M.  2007.  The mitochondrial subgenomes of the nematode Globodera pallida are mosaics: Evidence of recombination in an animal mitochondrial genome. Journal of Molecular Evolution. 64:463-471. Abstract
Rae SJ, Macaulay M, Ramsay L, Leigh F, Matthews D, O'Sullivan DM, Donini P, Morris PC, Powell W, Marshall DF et al..  2007.  Molecular barley breeding. Euphytica. 158:295-303. Abstract
Riga E, Karanastasi E, Oliveira CMG, Neilson R.  2007.  Molecular identification of two stubby root nematode species. American Journal of Potato Research. 84:161-167. Abstract
Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al..  2007.  Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.
Caumette G, Ouypornkochagorn S, Scrimgeour CM, Raab A, Feldmann J.  2007.  Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract
Matheson LA, Loren A, Hanton SL, Rossi M, Latijnhouwers M, Stefano G, Renna L, Brandizzi F.  2007.  Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the golgi matrix. Plant Physiology. 143:1615-1627.
Li X, Halpin C, Ryan MD.  2007.  A novel cleavage site within the potato leafroll virus P1 polyprotein. Journal of General Virology. 88:1620-1623. Abstract
Cockell CS, Raven JA.  2007.  Ozone and life on the Archaean earth. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1889-1901. Abstract
Stamati K, Hollingsworth PM, Russell JR.  2007.  Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
Giordano M, Norici A, Gilmour DJ, Raven JA.  2007.  Physiological responses of the green alga Dunaliella parva (Volvocales, Chlorophyta) to controlled incremental changes in the N source. Functional Plant Biology. 34:925-934. Abstract
Kaplan IB, Lee L, Ripoll DR, Palukaitis P, Gildow FE, Gray SM.  2007.  Point mutations in the potato leafroll virus major capsid protein alter virion stability and aphid transmission. Journal of General Virology. 88:1821-1830. Abstract
Carfrae JA, Sheppard LJ, Raven JA, Leith ID, Crossley A.  2007.  Potassium and phosphorus additions modify the response of Sphagnum capillifolium growing on a Scottish ombrotrophic bog to enhanced nitrogen deposition. Applied Geochemistry. 22:1111-1121. Abstract
McCue KF, Allen PV, Shepherd LVT, Blake A, Maccree MM, Rockhold DR, Novy RG, Stewart D, Davies HV, Belknap WR.  2007.  Potato glycosterol rhamnosyltransferase, the terminal step in triose side-chain biosynthesis. Phytochemistry. 68:327-334. Abstract
Laurenson K, McKendrick IJ, Reid HW, Challenor R, Mathewson GK.  2007.  Prevalence, spatial distribution and the effect of control measures on louping-ill virus in the Forest of Bowland, Lancashire. Epidemiology and Infection. 135:963-973. Abstract
Molina-Cano J-L, Moralejo MA, Elia M, Mu P, Russell JR, P AM, Ciudad F, Swanston JS.  2007.  QTL analysis of a cross between European and North American malting barleys reveals a putative candidate gene for . Molecular Breeding. 19:275-284. Abstract
Gooding MJ, Gregory PJ, Ford KE, Ruske RE.  2007.  Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
Poulsen M, Schroder M, Wilcks A, Kroghsbo S, Lindecrona RH, Miller A, Frenzel T, Danier J, Rychlik M, Shu QY et al..  2007.  Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
Mitchell A, Oommen M, Bhatia P, Scott P, Robertson ZC, Stewart D, McDougall GJ, Wallace HM.  2007.  Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract
Lewsey M, Robertson FC, Canto T, Palukaitis P, Carr JP.  2007.  Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein. Plant Journal. 50:240-252. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.