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Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG.  2012.  Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation. Nature Structural and Molecular Biology. 19:845-852.
Sherwood P, Bonello P.  2016.  Testing the systemic induced resistance hypothesis with Austrian pine and Diplodia sapinea. Physiological and Molecular Plant Pathology. 94:118-125.
Sheu SY, Chen MH, Liu WYY, Andrews M, James EK, Ardley JK, De Meyer SE, James TK, Howieson JG, Coutinho BG et al..  2015.  Burkholderia dipogonis sp. Nov., isolated from root nodules of Dipogon lignosus in New Zealand and Western Australia. International Journal of Systematic and Evolutionary Microbiology. 65:4716-4723.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, James EK, Sprent JI, Young JPW, Chen WM.  2012.  Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, dos Reis Jr FB, Melkonian RJ, Moulin L, James EK, Sprent JI et al..  2013.  Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. International Journal of Systematic and Applied Microbiology. 63:435-441.
Shi B-J, Symons RH, Palukaitis P.  2008.  The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection. Nucleic Acids Research. 36:1057-1071. Abstract
Shi L, Shi TX, Broadley MR, White PJ, Long Y, Meng JL, Xu FS, Hammond JP.  2013.  High-throughput root phenotyping screens identify genetic loci associated with root architectural traits in Brassica napus under contrasting phosphate availabilities. Annals of Botany. 112:381-389.
Shi B-J, Palukaitis P, Symons RH.  2005.  The conserved 5' termini of RNAs 1 and 2 of Tomato aspermy virus are dispensable for infection but affect virulence. Virus Genes. 30:181-191.
Shi B-J, Symons RH, Palukaitis P.  2009.  Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus. Virus Research. 140:216-221. Abstract
Shibu ME, Matthews RB, Bakam I, Moffat AJ, Baggaley NJ.  2012.  Estimating greenhouse gas abatement potential of biomass crops in Scotland under various management options. Biomass and Bioenergy. 47:211-227.
Shibu ME, van Keulen H, Leffelaar PA, Aggarwal PK.  2010.  Soil carbon balance of rice-based cropping systems of the Indo-Gangetic Plains. Geoderma. 160:143-154.
Shibu ME, Leffalaar PA, van Keulen H, Aggarwal PK.  2010.  LINTUL3, a simulation model for nitrogen-limited situations: applications to rice. European Journal of Agronomy. 32(4):255-271.
Shibu ME, van Keulen H, Leffelaar PA.  2012.  Long-term dynamics of soil C and N in intensive rice-based cropping systems of the Indo-Gangetic Plains (IGP): A modelling approach. Ecological Modelling. 232:40-63.
Shillam LL, Hopkins DW, Badalucco L, Laudicina VA.  2008.  Structural diversity and enzyme activity of volcanic soils at different stages of development and response to experimental disturbance. Soil Biology & Biochemistry. 40:2182-2185. Abstract
Shin KH, Yang SH, Lee JY, Lim CW, Lee SC, Brown JWS, Kim SH.  2015.  Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation. Plant Cell Reports. 34:495-505.
Shipley LA, Sorensen-Forbey JS, Moore BD.  2009.  Revisiting the dietary niches: when is a mammalian herbivore a specialist? Integrative and Comparative Biology. 49(3):274-290.
Shoesmith JR, Solomon CU, Yang X, Wilkinson LG, Sheldrick S, van Eijden E, Couwenberg S, Pugh LM, Eskan M, Stephens J et al..  2021.  APETALA2 functions as a temporal factor together with BLADE-ON-PETIOLE2 and MADS29 to control flower and grain development in barley. Development. 148:ArticleNo.dev194894.
Shortall S, McKee A, Sutherland LA.  2019.  Why do farm accidents persist? Normalising danger on the farm within the farm family Sociology of Health and Illness. 41:470-483.
Shortall O, Brown KM.  2020.  Enacting and resisting biosecurity citizenship: More-than-human geographies of enrolment in a disease eradication scheme in Scotland. Environment and Planning E: Nature and Space, Published online..
Shortall O, Anker HT, Sandøe P, Gamborg C.  2019.  Room at the margins for energy-crops? A qualitative analysis of stakeholder views on the use of marginal land for biomass production in Denmark Biomass and Bioenergy. 123:51-58.
Shortall OK.  2019.  Cows eat grass, don’t they? Contrasting sociotechnical imaginaries of the role of grazing in the UK and Irish dairy sectors Journal of Rural Studies. 72:45-57.
Shortall OK, Lorenzo-Arribas A.  2021.  Dairy farmer practices and attitudes relating to grass-based, high-feed-input, and indoor production systems in Ireland. Journal of Dairy Science (Article in press).
Shortall O, Sutherland LA, Ruston A, Kaler J.  2018.  True cowmen and commercial farmers: Exploring vets’ and dairy farmers’ contrasting views of "good farming" in relation to biosecurity. Sociologia Ruralis. 58:583-603.
Shortall O, Calo A.  2021.  Novel industry-government governance mechanisms for the eradication of bovine viral diarrhoea in the UK and Ireland. Journal of Rural Studies. 81:324-355.
Shortall OK, Green M, Brennan M, Kaler J.  2017.  Exploring expert opinion on the practicality and effectiveness of biosecurity measures on dairy farms in the United Kingdom using choice modelling. Journal of Dairy Science. 100:2225-2239.
Shortall S, McKee A, Sutherland LA.  2020.  The performance of occupational closure: the case of agriculture and gender. Sociologia Ruralis. 60:40-57.
Shotyk W, Krachler M, Aeschbach-Hertig W, Hillier S, Zheng J.  2009.  Trace elements in recent groundwater of an artesian flow system and comparison with snow: enrichments, depletions, and chemical evolution of the water. Journal of Environmental Monitoring, 12, 208-217..
Shu X, Daniell TJ, Hallett PD, Baggs EM, Mitchell S, Langarica-Fuentes A, Griffiths BS.  2021.  Role of microbial communities in conferring resistance and resilience of soil carbon and nitrogen cycling following contrasting stresses. European Journal of Soil Biology. 104:ArticleNo.103308.
Shu-Yi-Dan Z, Huang F-YH, Xin-Yuan Z, Chenshuo L, Ming-Kang J, Neilson R, Li HL, Jian-Qiang S.  2022.  Conurbation size drives antibiotic resistance along the river. Science of the Total Environment.
Shuzhong G, Jenkins A, Gao SJ, Lu Y, Li H, Li Y, Ferrier RC, Bailey M, Wang Y, Zhang Y et al..  2017.  Ensuring water resource security in China; the need for advances in evidence-based policy to support sustainable management. Environmental Science and Policy. 75:65-69.
Shyntum DY, Venter SN, Moleleki LN, Toth I, Coutinho TA.  2014.  Comparative genomics of type VI secretion systems in strains of Pantoea ananatis from different environments. BMC Genomics. 15:ArticleNo163.
Shyntum DY, Theron J, Venter SN, Moleleki LN, Toth IK, Coutinho TA.  2015.  Pantoea ananatis utilizes a type VI secretion system for pathogenesis and bacterial competition. Molecular Plant-Microbe Interactions. 28:420-431.
Sibbald AM, Hooper RJ, McLeod JE, Gordon IJ.  2011.  Responses of red deer (Cervus elaphus) to regular disturbance by hill walkers. European Journal of Wildlife Research. 57:817-825.
Sibbald AM, Erhard HW, McLeod JE, Hooper RJ.  2009.  Individual personality and the spatial distribution of grazing animals: an example with sheep. Behavioural Processes. 82(3):319-326.
Sibbald AM, Erhard HW, Hooper RJ, Dumont B, Boissy A.  2006.  A test for measuring individual variation in how far grazing animals will move away from a social group to feed. Applied Animal Behaviour Science. 98:89-99.
Sibbald AM, Oom SP, Hooper RJ, Anderson R.  2008.  Effects of social behaviour on the spatial distribution of sheep grazing a complex vegetation mosaic. Applied Animal Behaviour Science. 115(3-4):149-159.
Silva VM, Boleta EHM, Bereta MGD, Lavres J, Martins JT, Santos EF, dos Santos FLM, Putti FF, Furlani E, White PJ et al..  2018.  Physiological, biochemical, and ultrastructural charcterization of selenium toxicity in cowpea plants. Environmental and Experimental Botany. 150:172-182.
da Silva WL, Ingram J, Hackett CA, Coombs JJ, Douches D, Bryan GJ, De Jong W, Gray S.  2017.  Mapping loci that control tuber and foliar symptoms caused by PVY in autotetraploid potato (Solanum tuberosum L.). G3-Genes Genomes Genetics. 7:3587-3595.
Silva VM, Boleta EHM, Bereta MGD, Lavres J, Martins JT, Santos EF, dos Santos FLM, Putti FF, Furlani E, White PJ et al..  2018.  Physiological, biochemical, and ultrastructural characterization of selenium toxicity in cowpea plants. Environmental and Experimental Botany. 150:172-182.
Silva VC, Alves PAC, Rhem MFK, dos Santos JMF, James EK, Gross E.  2018.  Brazilian species of Calliandra Benth. (tribe Ingeae) are nodulated by diverse strains of Paraburkholderia. Systematic and Applied Microbiology. 41:241-250.
Silva VM, Boleta EHM, Martins JT, dos Santos FLM, da Rocha Silva AC, Alcock TD, Wilson L, de Sá ME, Young SD, Broadley MR et al..  2019.  Agronomic biofortification of cowpea with selenium: effects of selenate and selenite application on selenium and phytate concentrations in seeds. Journal of the Science of Food and Agriculture. 99:5969-5983.
Silvar C, Duncan JM, Cooke DEL, Williams NA, Diaz J, Merino F.  2005.  Development of specific PCR primers for identification and detection of Phytophthora capsici Leon. European Journal of Plant Pathology. 112:43-52.
Silvar C, Casas AM, Igartua E, Ponce-Molina LJ, Gracia MP, Schweizer G, Herz M, Flath K, Waugh R, Kopahnke D et al..  2011.  Resistance to powdery mildew in Spanish barley landraces is controlled by different sets of quantitative trait loci. Theoretical and Applied Genetics. 123:1019-1028.
Silvertown J, Tallowin J, Stevens C, Power SA, Morgan V, Emmett B, Hester AJ, Grime P, Morecroft M, Buxton R et al..  2010.  Environmental myopia: a diagnosis and a remedy. Trends in Ecology and Evolution. 25(10):556-561.
Simons V, Morrissey JP, Latijnhouwers M, Csukai M, Cleaver A, Yarrow C, Osborn A.  2006.  Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrobial Agents and Chemotherapy. 50:2732-2740.
Simonsson M, Andersson S, Andrist-Rangel Y, Hillier S, Mattsson L, Oborn I.  2007.  Potassium release and fixation as a function of fertilizer application rate and soil parent material. Geoderma. 140(1-2):188-198.
Simonsson M, Hillier S, Oborn I.  2009.  Changes in clay minerals and potassium fixation capacity as a result of release and fixation of potassium in long-term field experiments. Geoderma. 151(3-4):109-120.
Simonsson M, Court M, Bergholm J, Lemarchand D, Hillier S.  2016.  Mineralogy and biogeochemistry of potassium in the Skogaby experimental forest, southwest Sweden: pools, fluxes and K/Rb ratios in soil and biomass. Biogeochemistry. Published online..
Simpson CG, Lewandowska D, Liney M, Davidson D, Chapman S, Fuller J, McNicol J, Shaw P, Brown JWS.  2014.  Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially. New Phytologist. 203:424-436.
Simpson CG, Brown JWS.  2008.  U12-dependent intron splicing in plants. Current Topics in Microbiology and Immunology. 326:61-82.
Simpson CG, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol JW, Barta A, Brown JWS.  2008.  Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts. The Plant Journal. 53:1035-1048. Abstract
Simpson CG, Lewandowska D, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol JW, Raczynska D, Jarmolowski A, Barta A et al..  2008.  Alternative splicing in plants. Biochemical Society Transactions. 36:508-510.
Simpson SJ, Raubenheimer D, Charleston MA, Clissold FJ, Couzin ID, Kendall D, Clements KD, Ross A, Coleman RA, Dussutour A et al..  2009.  Modelling nutritional interactions: from individuals to communities. Trends in Ecology and Evolution.. 25(1):53-60.
Simpson GG.  2005.  NO flowering. Bioessays. 27:239-241. Abstract
Simpson CG, Manthri S, Raczynska KD, Kalyna M, Lewandowska D, Kusenda B, Maronova M, Szweykowska-Kulinska Z, Jarmolowski A, Barta A et al..  2010.  Regulation of plant gene expression by alternative splicing. Biochemical Society Transactions. 38:667-671.
Simpson CG, Cullen DW, Hackett CA, Smith K, Hallett P, McNicol J, Woodhead M, Graham J.  2017.  Mapping and expression of genes with a role in raspberry fruit ripening and softening. Theoretical and Applied Genetics. 130:557-572..
Sims M, Elston DA, Harris MP, Wanless S.  2007.  Incorporating variance uncertainty into a power analysis of monitoring designs. Journal of Agricultural Biological and Environmental Statistics. 12:236-249. Abstract
Sims M, Elston DA, Larkham A, Nussey DH, Albon SD.  2007.  Identifying when weather influences life-history traits of grazing herbivores. Journal of Animal Ecology. 76:761-770. Abstract
Sims M, Elston DA, Larkham AP, Nussey DH, Albon SD.  2007.  Identifying when weather influences life history traits of grazing herbivores. Journal of Animal Ecology. 76(4):761-770.
Sinclair ARE, Mduma SAR, Hopcraft G, Fryxell J, Hillborn R, Thirgood SJ.  2007.  Long-term ecosystem dynamics in the Serengeti: lessons for conservation. Conservation Biology. 21(3):580-590.
Sing L, Towers W, Ellis J.  2013.  Woodland expansion in Scotland: an assessment of the opportunities and constraints using GIS. Scottish Forestry. 67
Singh BK, Tate KR, Kolipaka G, Hedley CB, Macdonald CA, Millard P, Murrell JC.  2007.  Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria. Applied and Environmental Microbiology. 73(16):5153-5161.
Singh BK.  2010.  Exploring microbial diversity for biotechnology: the way forward. Trends in Biotechnology. 28(3):111-116.
Singh BK, Munro S, Reid E, Ord B, Potts JM, Paterson E, Millard P.  2006.  Investigating microbial community structure in soils by physiological, biochemical and molecular fingerprinting methods. European Journal of Soil Science. 57:72-82.
Singh BK, Campbell CD, Sorenson SJ, Zhou J.  2009.  Soil genomics. Nature Reviews in Microbiology.. 7(10):756.
Singh BK, Macdonald CA.  2010.  Drug discovery from uncultivable microorganisms. Drug Discovery Today. 15(17-18):792-799.
Singh BK, Walker A, Wright DJ.  2006.  Bioremedial potential of fenamiphos and chlorpyrifos degrading isolates: influence of different environmental conditions. Soil Biology and Biochemistry. 38(9):2682-2693.
Singh BK, Tate KR.  2007.  Biochemical and molecular characterisation of methanotrophs in soil from a pristine New Zealand beech forest. FEMS Microbiology Letters. 275(1):89-97.
Singh K, Aitkenhead MJ, Fidelis C, Yinil D, Sanderson T, Snoeck D, Field DJ.  2021.  Optimization of spectral pre-processing for estimating soil conditions on small farms. Soil Use and Management.
Singh BK, Munro S, Potts JM, Millard P.  2007.  Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils. Applied Soil Ecology. 36:147-155. Abstract
Singh BK.  2009.  Organophosphorus degrading bacteria: ecology and industrial applications. Nature Review Microbiology. 7(2):156-164.
Singh BK, Bardgett R, Smith P, Reay D.  2010.  Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nature Reviews Microbiology. 8(11):779-790.
Singh BK, Nunan N, Ridgway KP, McNicol J, Young JPW, Daniell TJ, Prosser JI, Millard P.  2008.  Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10(2):534-541.
Singh BK, Walker A.  2006.  Microbial degradation of organophosphorus compounds. FEMS Microbiology Review. 30(3):428-471.
Singh BK, Tate K, Ross D, Dando J, Singh J, Thomas N, Millard P, Murrell JC.  2009.  Soil methane oxidation and methanotroph responses to afforestation of pastures with Pinus radiata stands of different ages. Soil Biology and Biochemistry.. 41:2196-2205.
Singh BK, Munro S, Potts JM, Millard P.  2007.  Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils. Applied Soil Ecology. 36(2-3):147-155.
Singh BK, Tate K, Thomas N, Ross D, Singh J.  2011.  Differential effect of afforestation on nitrogen-fixing and denitrifiying communities and potential implications for nitrogen cycling. Soil Biology and Biochemistry. 43:1426-1433.
Singh BK.  2010.  Climate change and human health: an environmental perspective. Climate Research. 41(1):41-44.
Singh BK, Macdonald CA, Campbell CD, Bacon J.  2008.  Multiple profiling of soil microbial communities identifies potential genetic markers of metal-enriched sewage sludge. FEMS Microbiology Ecology. 65:555-564.
Singh BK, Thomas N.  2006.  Multiplex-terminal restriction fragment length polymorphism (M-TRFLP). Nature Protocols. 1(5):2428-2433.
Singh BK, Nunan N, Millard P.  2009.  Response of fungal, bacterial and ureolytic communities to synthetic sheep urine deposition in a grassland soil. FEMS Microbiology Ecology. 70(1):109-117.
Singh BK, Quince C, Macdonald CA, Khachane A, Thomas N, Abu Al-Soud W, Sorensen SJ, He ZL, White D, Sinclair A et al..  2014.  Loss of microbial diversity in soils is coincident with reductions in some specialized functions. Environmental Microbiology. 16:2408-2420.
Singh BK.  2010.  Archaea in a hyper-arid polar desert. Proceedings of the National Academy of Sciences of the USA.. 107(2):E1-E1.
Singh BK, Nunan N, Ridgway KP, McNicol JW, Young JPW, Daniell TJ, Prosser JI, Millard P.  2008.  Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10:534-541. Abstract
Singh BK, Nazaries L, Munro S, Anderson IC, Campbell CD.  2006.  Use of multiplex terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial community. Applied and Environmental Microbiology. 72(11):7278-7285.
Singh BK, Dawson LA, Macdonald CA.  2009.  Impact of biotic and abiotic interaction on soil microbial communities and functions: A field study. Applied Soil Ecology. 41(3):239-248.
Sinitsyna OV, Kalinina NO, McGeachy K, Whale E, Hepworth D, Love AJ, Taliansky ME, Yaminsky IV.  2020.  Interaction between nanocellulose and tobacco mosaic virus-like particles: an atomic force microscopy study. Cellulose, Published online.
Sinitsyna OV, Makarov VV, McGeachy K, Bukharova T, Whale E, Hepworth D, Yaminsky IV, Kalinina NO, Taliansky ME, Love AJ.  2019.  Virus-like particle facilitated deposition of hydroxyapatite bone mineral on nanocellulose after exposure to phosphate and calcium precursors. International Journal of Molecular Sciences. 20:ArticleNo.1814..
Sjogersten S, Caul S, Daniell TJ, Jurd APS, O'Sullivan OS, Stapleton CS, Titman JJ.  2016.  Organic matter chemistry controls greenhouse gas emissions from permafrost peatlands. Soil Biology and Biochemistry. 98:42-53.
Skelsey P, Humphris SN, Campbell EJ, Toth IK.  2018.  Threat of establishment of non-indigenous potato blackleg and tuber soft rot pathogens in Great Britain under climate change. PLoS One. 13:ArticleNo.e0205711.
Skelsey P.  2021.  Forecasting risk of crop disease with anomaly detection algorithms. Phytopathology. 111:321-332.
Skelsey P, Newton AC.  2015.  Future environmental and geographic risks of Fusarium head blight of wheat in Scotland. European Journal of Plant Pathology. 142:133-147.
Skelsey P, Kettle H, MacKenzie K, Blok V.  2018.  Potential impacts of climate change on the threat of potato cyst nematode species in Great Britain. Plant Pathology. Published online..
Skelsey P, Elphinstone JG, Saddler GS, Wale SJ, Toth IK.  2016.  Spatial analysis of blackleg-affected seed potato crops in Scotland. Plant Pathology. 65:570-576.
Skelsey P, Dancey SR, Preedy K, Lees AK, Cooke DEL.  2018.  Forecasting the spread of aerially transmitted crop diseases with a binary classifier for inoculum survival. Plant Pathology. Published online..
Skelsey P.  2020.  Forecasting risk of crop disease with anomaly detection algorithms. APS Phytopathology.
Skelsey P, With KA, Garrett KA.  2013.  Pest and disease management: Why we shouldn't go against the grain. PLoS ONE. 8:e75892.
Skelsey P, Newton AC.  2014.  Scale-dependent assessment of relative disease resistance to plant pathogens. Agronomy. 4:178-190.
Skelsey P, Kettle H, MacKenzie K, Blok V.  2018.  Potential impacts of climate change on the threat of potato cyst nematode species in Great Britain. Plant Pathology. 67:909-919.
Skelsey P, With KA, Garrett KA.  2013.  Why dispersal should be maximised at intermediate scales of heterogeneity. Theoretical Ecology. 6:203-211.
Skelsey P, Dancey SR, Preedy K, Lees AK, Cooke DEL.  2018.  Forecasting the spread of aerially transmitted crop diseases with a binary classifier for inoculum survival. Plant Pathology. 67:920-928.
Skiba MW, George TS, Baggs EM, Daniell TJ.  2011.  Plant influence on nitrification. Biochemical Society Transactions. 39:275-278.
Skubel RA, Khomik M, Brodeur JJ, Thorne R, Arain MA.  2017.  Short-term selective thinning effects on hydraulic functionality of a temperate pine forest in eastern Canada. Ecohydrology. 10:e1780.
Slater JM, Gilbert L, Johnson D, Karley AJ.  2019.  Limited effects of the maternal rearing environment on the behaviour and fitness of an insect herbivore and its natural enemy. PLoS ONE. 14:ArticleNo.e0209965.
Slater AM, Irvine KN, Byg AA, Davies IM, Gubbins M, Kafas A, Kenter J, MacDonald A, O'Hara Murray R, Potts T et al..  2020.  Integrating stakeholder knowledge through modular cooperative participatory processes for marine spatial planning outcomes (CORPORATES). Ecosystem Services. 44:ArticleNo.101126.
Slater AT, Cogan NOI, Hayes BJ, Schultz L, Dale MFB, Bryan GJ, Forster JW.  2014.  Improving breeding efficiency in potato using molecular and quantitative genetics. Theoretical and Applied Genetics. 127:2279-2292.
Slee B, Burlando C, Pisani E, Secco L, Polman N.  2021.  Social innovation: a preliminary exploration of a contested concept. Local Environment. Published online..
Slee B.  2006.  The socio-economic evaluation of the impact of forestry on rural development: a regional level analysis. Forest Policy and Economics. 8(5):542-544.
Slee B.  2011.  Governance, multifunctional forestry and economic literacy. Scottish Forestry. 65:18-23.
Slee B, Brown I, Donnelly D, Gordon IJ, Matthews KB, Towers W.  2014.  The ‘squeezed middle’: identifying and addressing conflicting demands on intermediate quality farmland in Scotland. Land Use Policy. 41:206-216.
Slee RW, Miller DG.  2015.  School closures as a driver of rural decline in Scotland: a problem in pursuit of some evidence? Scottish Geographical Journal. 131:78-97.
Slee B, Feliciano D, Nijnik M, Pajot G.  2012.  The scope of the land-based sector to mitigate climate change in North-east Scotland: opportunities and challenges with particular reference to the role of forests. International Journal of Environment and Sustainable Development.. 11:274-292.
Slee B.  2019.  An inductive classification of types of social innovation. Scottish Affairs. 28:152-176.
Slee RW.  2015.  Is there a case for community-based equity participation in Scottish on-shore wind energy production? Gaps in evidence and research needs Renewable and Sustainable Energy Reviews. 41:540-549.
Slee B.  2012.  Present opportunities for sustainable and multifunctional forest management for the development of rural areas. L’Italia Forestale e Montana. 67:147-160.
Slee B, Hopkins J, Vellinga N.  2015.  Could the creative class be a factor in Scottish rural development? Scottish Affairs. 24:207-226.
Slee B, Polman N.  2021.  An exploration of potential growth pathways of social innovations in rural Europe. Innovation - The European Journal of Social Science Research.. 34:251271.
Slee B.  2007.  Social indicators of multifunctional rural land use: the case of forestry in the UK. Agriculture, Ecosystems and Environment. 120(1):31-40.
Slee B, Feliciano D.  2015.  Challenges in the design of indicators for assessing the impact of the Scotland Rural Development Programme 2007-2013 on climate change mitigation. Ecological Indicators. 59:94-103.
Slee B, Whitfield R, Whitfield S.  2011.  Discourses of power: the development of small-scale hydropower in North-East Scotland. Rural Society. 21:54-64.
Sloan TJ, Payne RJ, Anderson AR, Bain C, Chapman S, Cowie N, Gilbert P, Lindsay R, Mauquoy D, Newton AJ et al..  2019.  Peatland afforestation in the UK and consequences for carbon storage. Mires and Peat. 23:ArticleNo.1..
Small LA.  2007.  East meets West: Utilising western literature to conceptualise post-Soviet agrarian change. Journal of Peasant Studies. 34(1):29-50.
Small LA.  2007.  Sustainable (rural) livelihoods: a critical review. Canadian Journal of Development Studies. 28:27-38.
Smart SM, Glanville HC, Blanes MD, Mercado LM, Emmett BA, Jones DL, Cosby BJ, Marrs RH, Butler A, Marshall MR et al..  2017.  Leaf dry matter content is better at predicting above-ground net primary production than specific leaf area. Functional Ecology. 31:1336-1344.
Smart SM, Jarvis SG, Mizunuma T, Herrero-Jauregui C, Fang Z, Butler A, Alison J, Wilson M, Marrs RH.  2019.  Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts. Ecology and Evolution. 9:12858-12868.
Smith HM, Blackstock KL, Wall G, Jeffrey P.  2014.  River basin management, development planning, and opportunities for debate around limits to growth. Journal of Hydrology. 519:2624-2631.
Smith P, Chapman SJ, Scott WA, Black HIJ, Wattenbach M, Milne R, Campbell CD, Lilly A, Ostle N, Levey P et al..  2007.  Climate change cannot be entirely responsible for soil carbon loss observed in England and Wales, 1978-2003. Global Change Biology. 13(12):2605-2609.
Smith J, Gottschalk P, Bellarby J, Chapman SJ, Lilly A, Towers W, Bell J, Coleman K, Nayak D, Richards M et al..  2010.  Estimating changes in Scottish soil carbon stocks using ECOSSE. II. Application. Climate Research. 45:179-192.
Smith J, Nayak D, Albanito F, Balana B, Black HIJ, Boke S, Brand A, Byg A, Dinato M, Habte M et al..  2019.  Treatment of organic resources before soil incorporation in semi-arid regions improves resilience to El Nino, and increases crop production and economic returns. Environmental Research Letters. 14:ArticleNo.085004.
Smith JU, Fischer A, Hallett PD, Homans HY, Smith P, Abdul-Salam Y, Emmerling HH, Phimister E.  2015.  Sustainable use of organic resources for bioenergy, food and water provision in rural Sub-Saharan Africa. Renewable and Sustainable Energy Reviews. 50:903-917.
Smith P, Ashmore MR, Black HIJ, Burgess PJ, Evans CD, Quine TA, Thomson AM, Hicks K, Orr HG.  2013.  The role of ecosystems and their management in regulating climate, and soil, water and air quality. Journal of Applied Ecology. 50:812-829.
Smith SW, Woodin SJ, Pakeman RJ, Johnson D, van der Wal R.  2014.  Root traits predict decomposition across a landscape-scale grazing experiment. New Phytologist. 2013:851-862.
Smith P, Albanito F, Bell M, Bellarby J, Blagodatskiy S, Datta A, Dondini M, Fitton N, Flynn H, Hastings A et al..  2012.  Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
Smith DG, Mayes RW, Hollands T, Cuddeford D, Yule HH, Ladrero CMM, Gillen E.  2007.  Validating the alkane pair technique to estimate dry matter intake in equids. Journal of Agricultural Science. 145:273-281.
Smith J, Nayak D, Datta A, Narkhede WN, Albanito F, Balana B, Bandyopadhyay SK, Black HIJ, Boke S, Brand A et al..  2020.  A systems model describing the impact of organic resource use on farming households in low to middle income countries. Agricultural Systems. 184:ArticleNo.102895.
Smith WE, Newman KB, Mitchell L.  2020.  A Bayesian hierarchical model of postlarval delta smelt entrainment: integrating transport, length composition, and sampling efficiency in estimates of loss. Canadian Journal of Fisheries and Aquatic Sciences. 77:789-813.
Smith J, Avery L.  2014.  The potential for small-scale biogas digesters in Sub-Saharan Africa to improve sustainable rural livelihoods. Biomass and Bioenergy. 70:1-3.
Smith HM, Wall G, Blackstock KL.  2013.  The role of map-based environmental information in supporting integration between river basin planning and spatial planning. Environmental Science and Policy. 30:81-89.
Smith J, Yeluripati J, Smith P, Nayak DR.  2020.  Potential yield challenges to scale-up of zero budget natural farming. Nature Sustainability. 3:247-252.
Smith P, Gregory PJ, van Vuuren D, Obersteiner M, Havlik P, Rounsevell M, Woods J, Stehfest E, Bellarby J.  2010.  Competition for land. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 365:2941-2957.
Smith RI, Barton DN, Dick J, Haines-Young R, Madsen AL, Rusch GM, Termansen M, Woods H, Carvalho L, Giuca RC et al..  2017.  Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Livestock grazing behavior and inter- versus intraspecific disease risk via the fecal-oral route. Behavioral Ecology. 20:426-432.
Smith J, Abegaz A, Matthews RB, Subedi M, Orskov ER, Tumwesige V, Smith P.  2014.  What is the potential for biogas digesters to improve soil carbon sequestration in Sub-Saharan Africa? Comparison with other uses of organic residues Biomass and Bioenergy. 70:73-86.
Smith P, Bhogal P, Edgington P, Black H, Lilly A, Barraclough D, Worrall F, Hillier J, Merrington G.  2010.  Consequences of feasible future agricultural land use change on soil organic carbon stocks and greenhouse gas emissions in Great Britain. Soil Use and Management. 26(4):381-398.
Smith LA, Wells KL, Marion G, Swain DL, Hutchings MR.  2010.  Effects of group composition on the grazing behaviour of herbivores. Animal Behaviour. 80:527-534.
Smith SW, Vandenberghe C, Johnson D, Pakeman RJ, van der Wal R, Woodin SJ.  2013.  Optimising carbon storage within a spatially heterogeneous upland grassland through sheep grazing management. Ecosystems. 17:418-429.
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Inter- and intra-specific exposure to parasites and pathogens via the faecal-oral route: a consequence of behaviour in a patchy environment. Epidemiology and Infection. 137:630-643.
Smith J, Abegaz A, Matthews RB, Subedi M, Orskov ER, Tumwesige V, Smith P.  2014.  What is the potential for biogas digesters to improve soil fertility and crop production in Sub-Saharan Africa? Biomass and Bioenergy. 70:58-72.
Smith J, Gottschalk P, Bellarby J, Chapman SJ, Lilly A, Towers W, Bell J, Coleman K, Nayak D, Richards M et al..  2010.  Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties. Climate Research. 45:179-192.
Smith LA, Swain DL, Innocent GT, Nevison I, Hutchings MR.  2019.  Considering appropriate replication in the design of animal social network studies. Scientific Reports. 9:ArticleNo.7208.
Smith SW, Johnson D, Quin SLO, Munro K, Pakeman RJ, van der Wal R, Woodin SJ.  2015.  Combination of herbivore removal and nitrogen deposition increases upland carbon storage. Global Change Biology.. 21:3036-3048.
Smith RI, Barton DN, Dick J, Haines-Young R, Madsen AL, Rusch GM, Termansen M, Woods H, Carvalho L, Giuca RC et al..  2018.  Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
Smith SW, Robertson AHJ, Meharg AA, Pakeman RJ, Johnson D, Woodin SJ, van der Wal R.  2013.  Milling plant and soil material in plastic tubes over-estimates carbon and under-estimates nitrogen concentrations. Plant and Soil. 369:509-513.
Smkal P, Kenicer G, Flavell AJ, Corander J, Kosterin O, Redden RJ, Ford R, Coyne CJ, Maxted M, Ambrose MJ et al..  2011.  Phylogeny, phylogeography and genetic diversity of the Pisum genus. Plant Genetic Resources. 9:4-18.
Smout S, Asseburg C, Matthiopoulos J, Fernandez C, Redpath S, Thirgood SJ, Harwood J.  2010.  The functional response of a generalist predator. PLoS ONE. 5(5):e10761.
Smykal P, Hybl M, Corander J, Jarkovsky J, Flavell AJ, Griga M.  2008.  Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis. Theoretical and Applied Genetics. 117:413-424.
Sneddon AA, Tsofliou F, Fyfe CL, Matheson I, Jackson DM, Horgan GW, Winzell MS, Wahle KWJ, Ahren B, Williams LM.  2008.  Effect of a conjugated linoleic acid and omega-3 fatty acid mixture on body composition and adiponectin. Obesity. 16:1019-1024. Abstract
Snell HSK, Robinson D, Midwood AJ.  2016.  Tree species' influences on soil carbon dynamics revealed with natural abundance C-13 techniques. Plant and Soil. 400:285-296.
Snell HSK, Robinson D, Midwood AJ.  2015.  Sampling root-respired CO2 in-situ for C-13 measurement. Plant and Soil, 393, 259-271..
Snell HSK, Robinson D, Midwood AJ.  2014.  Minimising methodological biases to improve the accuracy of partitioning soil respiration using natural abundance 13C. Rapid Communications in Mass Spectrometry. 28:2341-2351.
Sobczak M, Avrova AO, Jupowicz J, Phillips MS, Ernst K, Kumar A.  2005.  Characterisation of susceptibility and resistance responses to potato cyst nematode (Globodera spp.) infection of tomato lines in the absence and presence of the broad-spectrum nematode resistance Hero gene. Molecular Plant-Microbe Interactions. 18:158-168.
Soininen J, Lennon JJ, Hillebrand H.  2007.  A multivariate analysis of beta diversity across organisms and environments. Ecology. 88(11):2830-2838.
Solomon-Blackburn RM, Stewart HE, Bradshaw JE.  2007.  Distinguishing major-gene from field resistance to late blight (Phytophthora infestans) of potato (Solanum tuberosum) and selecting for high levels of field resistance. Theoretical and Applied Genetics. 115:141-149. Abstract
Solomon-Blackburn RM, Nikan J, Barker H.  2008.  Mechanism of strong resistance to Potato leafroll virus infection in a clone of potato (Solanum tuberosum). Annals of Applied Biology. 152:339-347. Abstract
Solomon-Blackburn RM, Bradshaw JE.  2007.  Resistance to Potato virus Y in multitrait potato breeding scheme without direct selection in each generation. Potato Research. 50:87-95. Abstract
Solopova A, van Tilburg AY, Foito A, Allwood JW, Stewart D, Kulakauskas S, Kuipers OP.  2019.  Engineering Lactococcus lactis for the production of unusual anthocyanins using tea as substrate. Metabolic Engineering. 54:160-169.
Soloviy I, Melnykovych M, Gurung AB, Hewitt RJ, Ustych R, Maksymiv L, Brang P, Meessen H, Kaflyk M.  2019.  Innovation in the use of wood energy in the Ukrainian Carpathians: Opportunities and threats for rural communities. Forest Policy and Economics. 104:160-169.
Soloviy I, Nijnik M, Ilkiv K.  2012.  Mountain forestry policy and strategies in response to climate change challenges: the case of the Ukrainian Carpathians. Journal of Economy and Ecology..
Som S, Buick R, Hagadorn JW, Blake TS, Perreault JM, Harnmeijer J, Catling DC.  2016.  Earth's air pressure 2.7 billion years ago constrained to less than half of modern levels. Nature Geoscience. Published online..
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Sommerhalder RJ, McDonald BA, Zhan J.  2006.  The frequencies and spatial distribution of mating types in Stagonospora nodorum are consistent with recurring sexual reproduction. Phytopathology. 96:234-239. Abstract
Sommerhalder RJ, McDonald BA, Zhan J.  2007.  Concordant evolution of mitochondrial and nuclear genomes in the wheat pathogen Phaeosphaeria nodurum. Fungal Genetics and Biology. 44:764-772. Abstract
Sommerkorn M.  2008.  Micro-topographic patterns unravel controls of soil water and temperature on soil respiration in three Siberian tundra systems. Soil Biology and Biochemistry.. 40(7):1792-1802.
Somorin YM, Vollmerhausen T, Waters N, Pritchard L, Abram F, Brennan F, O'Byrne C.  2018.  Absence of Curli in soil-persistent Escherichia coli is mediated by a C-di-GMP signaling defect and suggests evidence of biofilm-independent niche specialization. Frontiers in Microbiology. 9:ArticleNo.1340.
Song S, Gibson D, Ahmadzadeh S, Chu HO, Warden B, Overend R, Macfarlane F, Murray P, Marshall S, Aitkenhead MJ et al..  2020.  Low-cost hyperspectral imaging system using a linear variable bandpass filter for agritech applications. Applied Optics. 59:A167-A1754.
Song BK, Hein I, Druka A, Waugh R, Marshall DF, Nadarajah K, Yap SJ, Ratnam W.  2009.  The 172 kb genomic DNA region of the O. rufipogon ylg1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica. Functional & Integrative Genomics. 9:97-108.
Song Y, Glasbey CA, Polder G, van der Heijden GWAM.  2014.  Non-destructive automatic leaf area measurements by combining stereo and time-of-flight images. IET Computer Vision. 8:391-403.
Song Y, Glasbey CA, Horgan GW, Polder G, Dieleman JA, van der Heijden GWAM.  2014.  Automatic fruit recognition and counting from multiple images. Biosystems Engineering. 118:203-215.
Sonnenberg R, Bransby MF, Hallett PD, Bengough AG, Mickovski SB, Davies MCR.  2010.  Centrifuge modelling of soil slopes reinforced with vegetation. Canadian Geotechnical Journal. 47:1415-1430.
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Sorin R, Gordon IJ.  2012.  Developing a methodology to assess children's perceptions of the tropical environment. International Education Studies, 6. 96-109.. 6:96-109.
Soulsby C, Neal C, Laudon H, Burns DA, Merot P, Bobnell M, Dunn SM, Tetzlaff D.  2008.  Catchment data for process conceptualization: simply not enough? Hydrological Processes. 22(12):2057-2061.
Soulsby C, Tetzlaff D, Rodgers P, Dunn S, Waldron S.  2006.  Runoff processes, stream water residence times and controlling landscape characteristics in a mesoscale catchment: an initial evaluation. Journal of Hydrology. 325(1-4):197-221.
Soulsby C, Tetzlaff D, Dunn SM, Waldron S.  2006.  Scaling up and out in runoff process understanding - insights from nested experimental catchment studies. Hydrological Processes - HP Today. 20:2461-2465.
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Sparrow AD, Gregorich EG, Hopkins DW, Novis P, Elberling B, Greenfield LG.  2011.  Resource limitations on soil microbial activity in an Antarctic dry valley. Soil Science Society of America Journal. 75:2188-2197.
Spash CL, Urama KC, Burton R, Kenyon W, Shannon PH, Hill G.  2009.  Motives behind willingness to pay for improving biodiversity in a water ecosystem: economics, ethics and social psychology. Ecological Economics. 68(4):955-964.
Spechenkova N, Fesenko IA, Mamaeva A, Suprunova TP, Kalinina NO, Love AJ, Taliansky M.  2021.  The resistance responses of potato plants to potato virus Y are associated with an increased cellular methionine content and an altered SAM:SAH methylation index. Viruses. 13:ArticleNo.955.
Specht A, Gordon IJ, Groves RH, Lambers H, Phinn SR.  2015.  Catalysing transdisciplinary synthesis in ecosystem science and management. Science of the Total Environment. 534:1-3.
Speck JJ, James EK, Sugawara M, Sadowsky MJ, Gyaneshwar P.  2019.  An alkane sulfonate monooxygenase is required for symbiotic nitrogen fixation by Bradyrhizobium diazefficiens (syn. Bradyrhizobium japonicum) USDA110(T). Applied and Environmental Microbiology. 85:ArticleNo.e01552-19.
Speed JDM, Meisingset EL, Austrheim G, Hester AJ, Mysterud A, Tremblay J, Solberg EJ.  2014.  Low intensities of red deer browing constrain rowan growth in mature boreal forests of western Norway. Ecoscience. 20:311-318.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2013.  The response of alpine Salix shrubs to long-term experimental browsing varies with elevation and herbivore density. Arctic Antarctic and Alpine Research. 45:584-593.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2011.  Browsing interacts with climate to determine tree-ring increment. Functional Ecology. 25:1018-1023.
Speed JDM, Austrheim G, Hester AJ, Mysterud, A.  2010.  Experimental evidence for herbivore limitation of the treeline. Ecology. 91(11):3414-3420.
Speed JDM, Martinsen V, Hester AJ, Holand O, Mulder MJA, Austrheim G.  2015.  Continuous and discontinuous variation in ecosystem carbon stocks with elevation across a treeline ecotone. Biogeosciences. 12:1615-1627.
Speed JDM, Austrheim G, Hester AJ, Meisingset E, Mysterud A, Tremblay J, Oien A, Solberg E.  2014.  General and specific responses of understory vegetation to cervic herbivory across a range of boreal forests. Oikos.. 123:1270-1280.
Speed J, Austrheim G, Hester AJ, Mysterud A.  2011.  Growth limitation of mountain birch caused by sheep browsing at the altitudinal treeline. Forest Ecology and Management. 261:1344-1352.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2012.  Elevational advance of alpine plant communities is buffered by herbivory. Journal of Vegetation Science. 23:617-625.
Speed JDM, Austrheim G, Hester AJ, Solberg EJ, Tremblay JP.  2013.  Regional-scale alteration of clear-cut forest regeneration caused by moose browsing. Forest Ecology and Management. 289:289-299.
Speight L, Cole SJ, Moore RJ, Pierce C, Wright B, Golding B, Cranston M, Tavendale A, Dhondia J, Ghimire S.  2018.  Developing surface water flood forecasting capabilities in Scotland: an operational pilot for the 2014 Commonwealth Games in Glasgow. Journal of Flood Risk Management. 11:S884-S901.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.