Publications list
Filters: First Letter Of Last Name is S [Clear All Filters]
The development of rare earth element-labelled potassium depleted clays for use as cohesive sediment tracers in aquatic environments. Journal of Soils and Sediments. 11:1052-1061.
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2011.
A global collection of permanent vegetation plots. Journal of Vegetation Science. Journal of Vegetation Science. 33
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2022.
Bayesian variable selection in non-homogeneous hidden Markov models through an evolutionary Monte Carlo method. Computational Statistics and Data Analysis. 143:ArticleNo.UNSP106840.
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2020.
Bayesian analysis of multivariate Gaussian hidden Markov models with an unknown number of regimes. Journal of Time Series Analysis. 31:1-11.
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2010.
Reversible jump and the label switching problem in hidden Markov models. Journal of Statistical Planning and Inference. 139:2305-2315.
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2009.
Modelling species abundance in a river by Negative Binomial hidden Markov models. Computational Statistics and Data Analysis. 71:599-614.
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2014.
Periodic multivariate normal hidden Markov models for the analysis of water quality time series. Environmetrics. 22:304-317.
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2011.
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2019.
Mapping species distributions in one dimension by non homogeneous hidden Markov models: freshwater pearl mussels in the River Dee. Environmental and Ecological Statistics. 21:487-505.
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2014.
Spatial hidden Markov models and species distributions. Journal of Applied Statistics. 45:1595-1615.
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2018.
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2017.
Allele mining in barley genetic resources reveals genes of race-nonspecific powdery mildew resistance. Frontiers in Plant Science: Plant Nutrition. 2:e113.
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2011.
Allele mining in barley genetic resources reveals genes of race-non-specific powdery mildew resistance. Frontiers in Plant Science. 2:113.
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2012.
Geographies of citizenship and everyday (im)mobility. Geoforum. 64:325-332.
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2015.
A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping. Proceedings of the National Academy of Sciences, USA. 102:14694-14699. Abstract
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2005.
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2007.
An interdisciplinary look at legumes and their bacterial symbionts: some thoughts from Big Sky. New Phytologist. 184:15-17.
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2009.
West African legumes: the role of nodulation and nitrogen fixation. New Phytologist. 167:326-330. Abstract
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2005.
Cyanobacterial nitrogen fixation in association with feather mosses: moss as boss? New Phytologist. 200:5-6.
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2013.
Biogeography of nodulated legumes and their nitrogen fixing symbionts - Tansley review. New Phytologist. 215:40-56.
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2017.
From north to south: a latitudinal look at legume nodulation processes. South African Journal of Botany. 89:31-41.
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2013.
From pure to applied: legume research reports from down under. New Phytologist. 194:318-320.
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2012.
African legumes: A vital but under-utilised resource. Journal of Experimental Botany. 61:1257-1265.
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2010.
Multi-locus sequence types of Campylobacter carried by flies and slugs acquired from local ruminant faeces. Journal of Applied Microbiology. 109(3):829-838.
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2010.
Distribution patterns of metals (Cd, Cu, Cr, Ni, Pb, V and Zn) in British soils. Environmental Pollution. 153(2):273-283.
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2008.
Computational models that matter during a global pandemic outbreak: A call to action. Journal of Artificial Societies and Social Simulation. 23:ArticleNo.10.
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2020.
Defining targets for reversing declines of soil carbon in high-intensity arable cropping. Agronomy. 10:ArticleNo.973.
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2020.
Transitions to greater legume inclusion in cropland: defining opportunities and estimating benefits for the nitrogen economy. Food and Energy Security. 8:ArticleNo.e00175.
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2019.
Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract
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2009.
Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.
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2011.
Assessment of CaMV-mediated gene silencing and integration of CaMV into GM plants with a 35S RNA promoter. Environmental Biosafety Research. 6:259-270. Abstract
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2007.
Excision and episomal replication of Cauliflower mosaic virus integrated into a plant genome. Plant Physiology. 155:1908-1919.
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2011.
Analysis of meiosis and cell cycle genes of the facultatively asexual pea aphid, Acyrthosiphon pisum (Hemiptera: Aphididae). Insect Molecular Biology. 19 Supplement s2:229-239.
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2010.
Value of listening and listening for values in conservation. People and Nature. Published online..
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2021.
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2005.
Simple sequence repeat (SSR) markers for genetic mapping of raspberry and blackberry. Journal of the American Society of Horticultural Science. 130:722-728. Abstract
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2005.
Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell. 25:3640-3656.
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2013.
The role of effectors in non host resistance to filamentous plant pathogens. Frontiers in Plant Science. 5
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2014.
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2013.
A conserved oomycete CRN effector targets tomatoTCP14-2 to enhance virulence. Molecular Plant-Microbe Interactions. 34:309-318.
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2021.
Characterization of cell death inducing Phytophthora capsici CRN effectors suggests diverse activities in the host nucleus. Frontiers in Plant Science. 4
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2013.
Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
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2007.
Towards an indicator-based assessment of cultural heritage as a cultural ecosystem service - a case study of Scottish landscapes. Ecological Indicators. 95:288-297.
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2018.
Old and new faces of the nucleolus. Workshop on the nucleolus and disease. EMBO Reports. 10:35-40. Abstract
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2008.
Response of photosynthetic apparatus to moderate high temperature in contrasting wheat cultivars at different oxygen concentrations. Journal of Experimental Botany. 58:2133-2143. Abstract
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2007.
Raspberry fruit quality changes during ripening and storage as assessed by colour, sensory evaluation and chemical analyses. Scientia Horticulturae. 195:216-225.
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2015.
Breeding low-glycemic index barley for functional food. Field Crops Research. 154:31-39.
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2013.
Tradeoffs between income, biodiversity, and ecosystem functioning during tropical rainforest conversion and agroforestry intensification. Proceedings of the National Academy of Sciences of the United States of America. 104(12):4973-4978.
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2007.
Editor's choice: Evaluating the potential for adverse interactions within genetically engineered breeding stacks. Plant Physiology. 161:1587-1594.
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2013.
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2018.
Media surface properties and the development of nitrifying biofilms in mixed cultures for wastewater treatment. Process Safety and Environmental Protection. Published online. 91:321-324.
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2012.
Lignin as a base material for materials applications; Chemistry, application and economics (Invited mini review). Industrial Crops and Products. 27:202-207. Abstract
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2008.
Control of bracken (Pteridium aquilinum): meta-analysis of a multi-site study in the UK. Annals of Botany. 101:957-970.
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2008.
Metabolomic approach to identifying bioactive compounds in berries: Advances toward fruit nutritional enhancement. Molecular Nutrition and Food Research. 51:645-651. Abstract
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2007.
Congruent responses to weather variability in high arctic herbivores. Biology Letters. 8:1002-1005.
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2012.
The use of sheep movement data to inform design and interpretation of slaughterhouse-based surveillance activities. Frontiers in Veterinary Science. 7:ArticleNo.205.
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2020.
Investigating riparian margins for vegetation patterns and plant-environment relationships in northeast Scotland. Journal of Environmental Quality. 41:364-372.
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2012.
New records of the velvet ant and Mutilla europaea Linnaeues, 1758. British Journal of Entomology and Natural History. 29:229-230.
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2017.
Nesting preferences of the threatened wood ant Formica exsecta (Hymenoptera: Formicidae): implications for conservation in Scotland. Journal of Insect Conservation.. 14(3):269-276.
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2010.
Effects of riparian buffer strips on ground beetles (Coleoptera, Carabidae) within an agricultural landscape. Insect Conservation and Diversity. 7:172-184.
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2014.
Terrestrial nitrogen cycling in earth system models revisited. New Phytologist. 210:1165-1168.
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2016.
Desirable plant root traits for protecting natural and engineered slopes against landslides (Invited review). Plant and Soil. 324:1-30.
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2009.
Ecological mitigation of hillsope instability: ten key issues facing researchers and practitioners. Plant and Soil. 377:1-23.
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2014.
Effects of periodic input on the quasi-steady state: assumptions for enzyme-catalysed reaction. Journal of Mathematical Biology. 50:115-132.
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2005.
Thermal imaging as a viable tool for monitoring plant stress. Journal International des Sciences de la Vigne et du Vin. 41:77-84.
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2007.
Using nematode communities to test a European scale soil biological monitoring programme for policy development. Applied Soil Ecology. 97:78-85.
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2016.
Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer. Journal of Evolutionary Biology. 25:2457-2469.
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2012.
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2013.
Modelling the effects of previous infection and re-infection on the costs of bovine viral diarrhoea outbreaks in beef herds. Veterinary Journal. 185:138-143.
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2010.
Interactions between profit and welfare on extensive sheep farms. Animal Welfare. 21:57-64.
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2012.
Evaluating extensive sheep farming systems. Aspects of Applied Biology, 93, 161-166. Proceedings of the Integrated Agricultural Systems: Methodologies, Modelling and Measurement Conference, Edinburgh, UK, 2-4, June 2009.. 93:161-166.
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2009.
Mapping the H2 resistance effective against Globodera pallida pathotype Pa1 in tetraploid potato. Theoretical and Applied Genetics. 132:1283-1294.
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2019.
Seasonal bryophyte productivity in the sub-Arctic: a comparison with vascular plants. Functional Ecology. 26:365-378.
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2012.
Turnover of recently assimilated carbon in arctic bryophytes. Oecologia. 167:325-337.
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2011.
The role of mosses in carbon uptake and partitioning in arctic vegetation. New Phytologist. 199:163-175.
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2013.
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Research. 40:11240-11255.
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2012.
Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant Signalling and Behaviour. 8:e24638.
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2013.
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2010.
Impact of sulphur fertilisation on crop response to selenium fertilisation. Plant and Soil. 332:31-40.
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2010.
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2015.
Measuring the difference between actual and reported food intakes in the context of energy balance under laboratory conditions. British Journal of Nutrition. 111:2032-2043.
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2014.
Flavonoid profiling and transcriptome analysis reveals new gene-metabolite correlations in tubers of Solanum tuberosum L. Journal of Experimental Botany. 61:1225-1238.
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2010.
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2015.
Riparian buffer strips as a multifunctional management tool in agricultural landscapes: introduction. Journal of Environmental Quality. 41:297-303.
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2012.
River sediments provide a link between catchment pressures and ecological status in a mixed land use Scottish river system. Water Research. 41(12):2803-2815.
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2007.
Spatial contributions of diffuse inputs and within-channel processes to the form of stream water phosphorus over storm cycles. Journal of Hydrology. 350(3-4):203-214.
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2008.
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2017.
The utility of spatial data to delineate river riparian functions and management zones: a review. Science of the Total Environment. 757:ArticleNo.143982.
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2021.
Impact of soil and groundwater heterogeneity on surface water chemistry of an upland catchment. Journal of Hydrology. 318(1-4):103-120.
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2006.
Spatial variability in properties affecting organic horizon carbon storage in upland soils. Soil Science Society of America Journal.. 73(5):1724-1732.
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2009.
Biodegradability of natural dissolved organic matter collected from a UK moorland stream. Water Research. 47:1169-1180.
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2013.
The mineralisation of dissolved organic matter recovered from temperate waterbodies during summer. Aquatic Sciences. 78:447-482.
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2016.
River phosphorus cycling: separating biotic and abiotic uptake during short-term changes in sewage effluent loading. Water Research.. 44(15):4425-4436.
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2010.
Evaluating the use of in-situ turbidity measurements to quantify fluvial sediment and phosphorus concentrations and fluxes in agricultural streams. Science of the Total Environment. 607:391-402.
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2017.
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2011.
Current insight into the effectiveness of riparian management, attainment of multiple benefits and potential technical enhancements. Journal of Environmental Quality. 48:236-247.
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2019.
Multi-element signatures of stream sediments and sources under moderate to low flow conditions. Applied Geochemistry. 24(5):800-809.
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2009.
Recovering phosphorus from soil - A root solution? Environmental Science and Technology. 46:1977-1978.
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2012.
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2020.
Spatial representation of in-stream sediment phosphorus release combining channel network approaches and in-situ experiments. The Science of the Total Environment. 795:ArticleNo.148790.
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2021.
Coupled macronutrient cycling in stream biofilms: effects of stoichiometry, light and temperature. Science of the Total Environment. 703:ArticleNumber134880.
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2020.
Vegetated buffer strips can lead to increased release of phosphorus to waters: A biogeochemical assessment of the mechanisms. Environmental Science and Technology. 43(6):1858-1863.
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2009.
Relationships between soil physicochemical, microbiological properties, and nutrient release in buffer soils compared to field soils. Journal of Environmental Quality. 41:400-409.
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2012.
Physico-chemical and biological controls on dissolved organic matter in peat aggregate soil columns. European Journal of Soil Science. 58:646-657.
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2007.
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2008.
A novel approach to evaluating relationships between soil test and runoff P at landscape scales by integrating farmer knowledge on soil drains. Agriculture, Ecosystems and Environment. 254:179-190.
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2018.
The interactions of site-specific factors on riparian buffer effectiveness across multiple pollutants: a review. Science of the Total Environment. 798:ArticleNo.149238.
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2021.
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2015.
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2012.
Temperature and soil moisture effects on dissolved organic matter release from a moorland Podzol O horizon under field and controlled laboratory. European Journal of Soil Science. 58(5):1007-1016.
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2007.
Spatial and temporal dynamics of stream water particulate and dissolved N, P and C forms along a catchment transect, NE Scotland. Journal of Hydrology. 350(3-4):187-202.
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2008.
Balancing macronutrient stoichiometry to alleviate eutrophication. Science of the Total Environment. 634:439-447.
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2018.
Reply to comment on 'Multi-element' signatures of stream sediments and their sources under moderate to low flow conditions. Applied Geochemistry. 25(10):1617-1619.
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2010.
Common features of environmental and potentially beneficial plant-associated Burkholderia. Microbial Ecology. 63:249-266.
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2012.
Biological nitrification inhibition (BNI) - Is there potential for genetic interventions in Triticeae? Breeding Science. 59:529-545.
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2009.
Biological nitrification inhibition (BNI) - a novel strategy to regulate nitrification in agricultural systems. Advances in Agronomy. 114:249-302.
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2012.
Factors influencing the effectiveness of an agro-environmental project in China. Outlook on Agriculture. 40:157-163.
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2011.
Can biogas digesters help to reduce deforestation in Africa? Biomass and Bioenergy. 70:87-98.
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2014.
Agro-environmental project duration and effectiveness in South-East Asia. Outlook on Agriculture. 39(2):107-113.
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2010.
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2009.
Variation in tuber mineral concentrations among accessions of Solanum species held in the Commonwealth Potato Collection. Genetic Resources and Crop Evolution. 64:1927-1935.
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2017.
The three dimensional distribution of minerals in potato tubers. Annals of Botany. 107:681-691.
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2011.
Multi-level governance: opportunities and barriers in moving to a low-carbon Scotland. Earth and Environmental Science, Transactions of the Royal Society of Edinburgh. 103:175-186.
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2012.
Nucleotide sequence analysis of two lignin genes in Acacia auriculiformis x Acacia mangium hybrid for enhancement of wood pulp quality. Tree Genetics and Genome. 9:1369-1381.
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2013.
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2007.
Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell and Environment. 37:1276-1298.
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2014.
Supporting the role of small farms in the European regional food systems: What role for the science-policy interface? Global Food Security. 28:ArticleNo.100433.
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2021.
Environmental chemicals in dog testes reflect their geographical source and may be associated with altered pathology. Scientific Reports. 11:ArticleNo.7361.
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2021.
ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
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2011.
Distribution of soil carbon and microbial biomass in arable soils under different tillage regimes. Plant and Soil. 338:17-25.
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2011.
Characterization of three novel desaturases involved in the delta-6 desaturation pathways for polyunsaturated fatty acid biosynthesis from Phytophthora infestans. Applied Microbiology and Biotechnology. 97:7689-7697.
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2013.
Microbial properties and nitrogen contents of arable soils under different tillage regimes. Soil Use and Management. 30:152-159.
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2014.
Chill unit models and recent changes in the occurrence of winter chill and spring frost in the United Kingdom. Journal of Horticultural Science & Biotechnology. 81:949-958. Abstract
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2006.
People, predators and perceptions: patterns of livestock depredation by snow leopards and wolves. Journal of Applied Ecology. 50:550-560.
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2013.
Triggering change: towards a conceptualisation of major change processes in farm decision-making. Journal of Environmental Management. 104:142-151.
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2012.
Can Organic Farmers Be 'Good Farmers'? Adding the 'taste of necessity' to the conventionalization debate Agriculture and Human Values. 30:429-441.
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2013.
The identification of priority opportunities for UK nature conservation policy. Journal of Applied Ecology. 47(5):955-965.
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2010.
Beyond crofting: Assessing change on Scotland's small-scale holdings. Scottish Geographical Journal. 130:223-242.
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2014.
Inclusivity of on-farm demonstration: gender, age and geographic location. The Journal of Agricultural Education and Extension. Published online..
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2021.
Effectively organic: Environmental gains on conventional farms through the market? Land Use Policy. 28:815-824.
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2011.
Farm family coping with stress: the impact of the 1998 ice storm. Journal of Comparative Family Studies. 39(4):527-543.
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2008.
Agri-environmental diversification:linking environmental, forestry and renewable energy engagement on Scottish farms. Journal of Rural Studies. 47:10-20.
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2016.
Agriculture and inequalities: Gentrification in a Scottish parish. Journal of Rural Studies. 68:240-250.
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2019.
Return of the gentleman farmer?: conceptualising gentrification in UK agriculture Journal of Rural Studies. 28:568-576.
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2012.
Accounting for false positive detection error induced by transient individuals. Wildlife Research. 40:490-498.
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2013.
Environmental grants and regulations in strategic farm business decision-making: A case study of attitudinal behaviour in Scotland. Land Use Policy, Special Issue: SI. 27(2):415-423.
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2010.
Future-proofing the farm: On-farm wind turbine development in farm business decision-making. Land Use Policy. 36:102-112.
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2014.
A collaboratively-derived science-policy research agenda. PloS ONE. 7:e31824.
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2012.
Post-Soviet agricultural employment: A case study of employee incentives in Krasnodar Territory, Russia. Journal of Peasant Studies. 35(3):369-389.
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2008.
Linking practices of multifunctional forestry to policy objectives: case studies in Finland and the UK. Forest Policy and Economics. 86:35-44.
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2018.
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2012.
Virtualizing the "good life": reworking narratives of agrarianism and the rural idyll in a computer game. Agriculture and Human Values. Published online..
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2020.
Differentiating farmers: opening the black box of private farming in post-Soviet states. Agriculture and Human Values. 27(3):259-276.
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2010.
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2014.
Conceptualising multi-regime interactions: the role of the agriculture sector in renewable energy transitions. Research Policy. 44:1543-1554.
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2015.
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2012.
Finding ‘hobby’ farmers: a" parish study" methodology for qualitative research. Sociologia Ruralis. 60:129-150.
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2020.
Good farmers, Good neighbours? The role of cultural capital in social capital development in a Scottish farming community Sociologia Ruralis. 51:238-255.
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2011.
Of organic farmers and "good farmers": changing habitus in rural England. Journal of Rural Studies. 28:232-240.
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2012.
Considering the source: Commercialisation and trust in agri-environmental information and advisory services in England. Journal of Environmental Management. 118:96-205.
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2013.
New knowledge networks of small-scale farmers in Europe’s periphery. Land Use Policy. 63:428-439.
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2017.
The identification of 100 ecological questions of high policy relevance in the UK. Journal of Applied Ecology. 43(4):617-627.
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2006.
Towards a cross-sectoral analysis of land use decision-making in Scotland. Landscape and Urban Planning. 100:1-10.
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2011.
Beyond hobby farming: towards a typology of non-commercial farming. Agriculture and Human Values. 36:475-493.
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2019.
The value of expanding the training population to improve genomic selection models in tetraploid potato. Frontiers in Plant Science. 9:ArticleNo.1118.
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2018.
The value of expanding the training population to improve genomic selection models in tetraploid potato. Frontiers in Plant Science. 9:ArticleNo.1118.
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2018.
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2007.
Combining an active transponder system with sprayed n-alkanes to quantify investigative and ingestive grazing behaviour of dairy cattle in pastures treated with slurry. Applied Animal Behaviour Science. 109(2-4):211-222.
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2008.
A cholesterol-based allostery model of T cell receptor phosphorylation. Immunity. 44:1091-1101.
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2016.
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2012.
Viruses in soils: morphological diversity and abundance in the rhizosphere. Annals of Applied Biology. 155:51-60. Abstract
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2009.
Variation in grain size and shape in a population of hull-less barley and its influence on yield and quality traits. Journal of Agricultural Science. 155:117-128.
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2017.
Determining the spirit yield of wheat varieties and variety mixtures. Journal of Cereal Science. 42:127-134. Abstract
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2005.
Associations between grain characteristics and alcohol yield among soft wheat varieties. Journal of the Science of Food and Agriculture. 87:676-683. Abstract
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2007.
Barleys grown as cultivar mixtures compared with blends made before and after malting, for effects on malting performance. Journal of the Institute of Brewing. 111:144-152. Abstract
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2005.
Effects of grain and malt beta-glucan on distilling quality in a population of hull-less barley. Journal of the Institute of Brewing. 117:389-393.
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2011.
Variation, across environments within the UK, in grain protein and grain hardness, in wheat varieties of differing distilling quality. Field Crops Research. 127:146-152.
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2012.
Mixtures of UK wheat as an efficient and environmentally friendly source for bioethanol. Journal of Industrial Ecology. 9:109-126. Abstract
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2005.
Variation across environments in patterns of water uptake and endosperm modification in barley varieties and variety mixtures. Journal of the Science of Food and Agriculture. 86:826-833. Abstract
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2006.
Stability, across environments, of grain and alcohol yield, in soft wheat varieties grown for grain distilling or bioethanol production. Journal of the Science of Food and Agriculture. 94:3234-3240.
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2014.
The influence of steep regime and germination period on the malting properties of some hull-less barley lines. Journal of the Institute of Brewing. 118:186-191.
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2012.
Metabolic effects of elevated temperature on organic acid degradation in ripening Vitis vinifera fruit. Journal of Experimental Botany. 65:5975-5988.
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2014.
Alternative splicing in plants - coming of age. Trends in Plant Science. 17:616-623.
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2012.
Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.
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2005.
A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers. Theoretical and Applied Genetics. 112:517-527. Abstract
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2006.
Sequence-specific amplification polymorphisms (SSAPs): a multi-locus approach for analyzing transposon insertions. Nature Protocols. 1:2746-2752.
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2007.
Doubled haploidy and induced mutation. Euphytica. 158:359-370. Abstract
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2007.
Promoting microbial immobilization of soil nitrogen during restoration of abandoned agricultural fields by organic additions. Biology and Fertility of Soils. 43:823-828.
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2007.
REMA: A computer-based mapping tool for analysis of restriction sites in multiple DNA sequences. Journal of Microbiological Methods. 69(2):411-413.
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