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2013
Reed MS, Hubacek K, Bonn A, Burt TP, Holden J, Stringer LC, Beharry-Borg N, Buckmaster S, Chapman D, Chapman PJ et al..  2013.  Anticipating and managing future trade-offs and complementarities between ecosystem services. Ecology and Society, 18, 5..
Bennett AE, Daniell TJ, Opik M, Davison J, Moora M, Zobel M, Selosse MA, Evans D.  2013.  Arbuscular mycorrhizal fungal networks vary throughout the growing season and between successional stages. PLoS ONE. 8:e83241.
Chen MH, Sheu SY, James EK, Young CC, Chen WM.  2013.  Azoarcus olearius sp.nov., a nitrogen-fixing bacterium isolated from oil-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. 63:3755-3761.
Giaramida L, Manage PM, Edwards C, Singh BK, Lawton LA.  2013.  Bacterial communities' response to microcystins exposure and nutrient availability: Linking degradation capacity to community structure. International Biodeterioration and Biodegradation. 84:111-117.
Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M et al..  2013.  Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. Plant Journal. 76:494-505.
Seim GL, Ahn CI, Bodis MS, Luwedde F, Miller DD, Hillier S, Tako E, Glahn RP, Young SL.  2013.  Bioavailability of iron in geophagic earths and clay minerals, and their effect on dietary iron absorption using an in vitro digestion/Caco-2 cell model. Food and Function. 4:1263-1270.
Stutter MI, Richards S, Dawson JJC.  2013.  Biodegradability of natural dissolved organic matter collected from a UK moorland stream. Water Research. 47:1169-1180.
Steele K, Dickin E, Keerio MD, Samad S, Kambona C, Brook R, Thomas W, Frost G.  2013.  Breeding low-glycemic index barley for functional food. Field Crops Research. 154:31-39.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, dos Reis Jr FB, Melkonian RJ, Moulin L, James EK, Sprent JI et al..  2013.  Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. International Journal of Systematic and Applied Microbiology. 63:435-441.
Bournaud C, de Faria S, Santos JMF, Tisseyre P, Silva M, Chaintreuil C, Gross E, James EK, Prin Y, Moulin L.  2013.  Burkholderia species are the most common and preferred nodulating symbionts of the Piptadenia group (Tribe Mimoseae). PLoS ONE. 8:e63478.
Vanholme R, Cesarino I, Rataj K, Xiao Y, Sundin L, Goeminne G, Kim H, Cross J, Morreel K, Araujo P et al..  2013.  Caffeoyl Shikimate Esterase (CSE) is an enzyme in the lignin biosynthetic pathway. Science. 341:1103-1106.
Sutherland LA.  2013.  Can Organic Farmers Be 'Good Farmers'? Adding the 'taste of necessity' to the conventionalization debate Agriculture and Human Values. 30:429-441.
Puttock A, Macleod CJA, Bol R, Sessford P, Dungait J, Brazier RE.  2013.  Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions. Earth Surface Processes and Landforms. 38:1602-1611.
Safaiefarahani B, Mostowfizadeh-Ghalamfarsa R, Cooke DEL.  2013.  Characterisation of Phytophthora inundata according to host range, morphological variation and multigene molecular phylogeny. Phytopathologia Mediterranea. 52:46-65.
Stam R, Howden AJM, Delgado-Cerezo M, Amaro TMMM, Motion GB, Pham J, Huitema E.  2013.  Characterization of cell death inducing Phytophthora capsici CRN effectors suggests diverse activities in the host nucleus. Frontiers in Plant Science. 4
Sun Q, Liu J, Zhang Q, Qing X, Dobson G, Li X, Qi B.  2013.  Characterization of three novel desaturases involved in the delta-6 desaturation pathways for polyunsaturated fatty acid biosynthesis from Phytophthora infestans. Applied Microbiology and Biotechnology. 97:7689-7697.
Brooker RW, Kikvidze Z, Kunstler G, Liancourt P, Seifan M.  2013.  The concept and measurement of importance: a comment on Rees et al. 2012. Journal of Ecology. 101:1369-13789.
Sutherland LA, Mills J, Ingram J, Burton RJF, Dwyer J, Blackstock KL.  2013.  Considering the source: Commercialisation and trust in agri-environmental information and advisory services in England. Journal of Environmental Management. 118:96-205.
Sharma SK, Bolser D, de Boer J, Sonderkaer M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS et al..  2013.  Construction of reference chromosome-scale Pseudomolecules for potato: integrating the potato genome with genetic and physical maps. G3-Genomes Genomes Genetics. 3:2031-2047.
Gregory PJ, Atkinson CJ, Bengough AG, Else MA, Fernandez-Fernandez F, Harrison RJ, Schmidt S.  2013.  Contributions of roots and rootstocks to sustainable, intensified crop production. Journal of Experimental Botany. 64:1209-1222.
McCallum S, Cullen DW, Hedley P, Simpson C, Hancock RD, Milne L, Hackett CA, Graham J.  2013.  Control of fruit quality traits in red raspberry, a review from the James Hutton Institute. Aspects of Applied Biology. 119:1-16.
Whitehead PG, Crossman J, Balana BB, Futter MN, Comber S, Jin L, Skuras D, Wade AJ, Bowes MJ, Read DS.  2013.  A cost-effectiveness analysis of water security and water quality: impacts of climate and land-use change on the River Thames system. Philosophical Transactions of the Royal Society, Series A. 371:201204B.
Reynolds B, Chamberlain PM, Poskitt J, Woods C, Scott WA, Rowe EC, Robinson DA, Frogbrook ZL, Keith AM, Henrys PA et al..  2013.  Countryside survey: National "Soil Change" 1978-2007 for topsoils in Great Britain - acidity, carbon, and total nitrogen status. Vadose Zone Journal. 12
Sprent JI, Meeks JC.  2013.  Cyanobacterial nitrogen fixation in association with feather mosses: moss as boss? New Phytologist. 200:5-6.
Lukhovitskaya NI, Thaduri S, Garushyants SK, Torrance L, Savenkov EI.  2013.  Deciphering the mechanism of defective interfering RNA (DI RNA) biogenesis reveals that a viral protein and the DI RNA act antagonistically in virus infection. Journal of Virology. 87:6091-6103.
Welch D, Scott D, Elston DA.  2013.  Declining incidence of multi-trunking over time in a Scottish plantation of Picea sitchensis. Scandinavian Journal of Forest Research. 28:17-27.
Pritchard L, Humphris S, Saddler GS, Parkinson NM, Bertrand V, Elphinstone JG, Toth IK.  2013.  Detection of phytopathogens of the genus Dickeya using a PCR primer prediction pipeline for draft bacterial genome sequences. Plant Pathology. 62:587-596.
Schoeb C, Armas C, Pugnaire FI.  2013.  Direct and indirect interactions co-determine species composition in nurse plant systems. Oikos. 122:1371-1379.
Shand CA, Rosen K, Thored K, Wendler R, Hillier SJ.  2013.  Downward migration of radiocaesium in organic soils across a transect in Scotland. Journal of Environmental Radioactivity. 115:124-133.
Pritchard L, Humphris S, Saddler GS, Elphinstone JG, Pirhonen M, Toth IK.  2013.  Draft Genome Sequences of 17 isolates of the plant pathogenic bacterium Dickeya. Genome Announcements. 1:e00978-13.
Pritchard L, Humphris S, Baeyen S, Maes M, Van Vaerenbergh J, Elphinstone J, Saddler G, Toth IK.  2013.  Draft genome sequences of four Dickeya dianthicola and four Dickeya solani strains. Genome Announcements. 1:e0087-12.
Gushchin VA, Lukhovitskaya NI, Andreev DE, Wright KM, Taliansky ME, Solovyev AG, Morozov S, MacFarlane SA.  2013.  Dynamic localization of two tobamovirus ORF6 proteins involves distinct organellar compartments. Journal of General Virology. 94:230-240.
Andow DA, Lovei GL, Arpaia S, Wilson L, Fontes EMG, Hilbeck A, Lang A, Van Tuat N, Pires CSS, Sujii ER et al..  2013.  An ecologically-based method for selecting ecological indicators for assessing risks to biological diversity from genetically-engineered plants. Journal of Biosafety. 22:141-156.
Nijnik M, Pajot G, Moffat A, Slee B.  2013.  An economic analysis of the establishment of forest plantations in the United Kingdom to mitigate climatic change. Forest Policy and Economics. 26:34-42.
Steiner HY, Halpin C, Jez JM, Kough J, Parrott W, Underhill L, Weber N, Hannah LC.  2013.  Editor's choice: Evaluating the potential for adverse interactions within genetically engineered breeding stacks. Plant Physiology. 161:1587-1594.
Tavares LR, Pimpao R, McDougall G, Stewart D, Ferreira RB, Santos CN.  2013.  Elucidating phytochemical production in Juniperus sp.: seasonality and response to stress situations. Journal of Agricultural and Food Chemistry. 61:4044-4052.
Chowdappa P, Kumar NBJ, Madhura S, Kumar MSP, Myers KL, Fry WE, Squires JN, Cooke DEL.  2013.  Emergence of 13_A2 blue lineage of Phytophthora infestans was responsible for severe outbreaks of late blight on tomato in South-West India. Journal of Phytopathology. 161:49-58.
Paterson A, Kassim A, McCallum S, Woodhead M, Smith K, Zait D, Graham J.  2013.  Environmental and seasonal influences on red raspberry flavour volatiles and identification of quantitative trait loci (QTL) and candidate genes. Theoretical and Applied Genetics. 126:33-48.
Cameron DR, Van Oijen M, Werner C, Butterbach-Bahl K, Grote R, Haas E, Heuvelink GBM, Kiese R, Kros J, Kuhnert M et al..  2013.  Environmental change impacts on the C- and N-cycle of European forests: a model comparison study. Biogeosciences. 10:1751-1773.
Feliciano D, Slee B, Hunter C, Smith P.  2013.  Estimating the contribution of rural land uses to greenhouse gas emissions: A case study for North East Scotland. Environmental Science and Policy. 25:36-49.
Whybrow S, Ritz P, Horgan GW, Stubbs RJ.  2013.  An evaluation of the IDEEA (TM) activity monitor for estimating energy expenditure. British Journal of Nutrition. 109:173-183.
Espinosa M, Psaltopoulos D, Santini F, Phimister E, Roberts D, Mary S, Ratinger T, Skuras D, Balamou E, Cardenette M et al..  2013.  Ex-ante analysis of the regional impacts of the Common Agricultural Policy: a rural-urban recursive dynamic CGE model approach. European Planning Studies. Published online..
King J, Armstead I, Harper J, Ramsey L, Snape J, Waugh R, James C, Thomas A, Gasior D, Kelly R et al..  2013.  Exploitation of interspecific diversity for monocot crop improvement. Heredity. 110:475-483.
Bellingham M, Amezaga MR, Mandon-Pepin B, Speers CJB, Kyle CE, Evans NP, Sharpe RM, Cotinot C, Rhind SM, Fowler PA.  2013.  Exposure to chemical cocktails before or after conception - the effect of timing on ovarian function. Molecular and Cellular Endocrinology. 376:156-172.
Roberts D, Majewski E, Sulewski P.  2013.  Farm household interactions with local economies: A comparison of two EU case study areas. Land Use Policy. 31:156-165.
Fisk SP, Cuestas-Marcos A, Cistue L, Russell J, Smith KP, Baenziger S, Bedo Z, Corey A, Filichkin T, Karsai I et al..  2013.  FR-H3: a new QTL to assist in the development of fall-sown barley with superior low temperature tolerance. Theoretical and Applied Genetics. 126:335-347.
Sprent JI, Ardley JK, James EK.  2013.  From north to south: a latitudinal look at legume nodulation processes. South African Journal of Botany. 89:31-41.
Weil Z, Liang X, Pendlowski H, Hillier S, Suntornvongasul K, Sihanonth P, Gadd GM.  2013.  Fungal biotransformation of zinc silicate and sulfide mineral ores. Environmental Microbiology. 15:2173-2186.
Josuttis M, Verrall S, Stewart D, Kruger E, McDougall GJ.  2013.  Genetic and environmental effects on tannin composition in strawberry (Fragaria x ananassa) cultivars grown in different European locations. Journal of Agricultural and Food Chemistry. 61:790-800.
Alimi NA, Bink MCAM, Dieleman JA, Nicolai M, Wubs M, Heuvelink E, Magan J, Voorrips RE, Jansen J, Rodrigues PC et al..  2013.  Genetic and QTL analyses of yield and a set of physiological traits in pepper. Euphytica. 190:181-201.
Yannic G, Pellissier L, Ortego J, Lecomte N, Couturier S, Cuyler C, Dussault C, Hundertmark KJ, Irvine RJ, Jenkins DA et al..  2013.  Genetic diversity in caribou linked to past and future climate change. Nature Climate Change. 4:132-137.
Bull TJ, Schock A, Sharp JM, Greene M, McKendrick IJ, Sales J, Linedale R, Stevenson K.  2013.  Genomic variations associated with attenuation in Mycobacterium avium subsp paratuberculosis vaccine strains. BMC Microbiology, 13, Article No.11..
Fowler D, Pyle JA, Raven JA, Sutton MA.  2013.  The global nitrogen cycle in the twenty-first century: introduction. Philosophical Transactions of the Royal Society, B. 368:ArticleNo.20130165..
Jacobs AAA, Scheper JA, Benvenutti MA, Gordon IJ, Poppi DP, Elgersma A.  2013.  Gradients in fracture force and grazing resistance across canopy layers in seven tropical grass species. Grass and Forage Science. 68:278-287.
Shaughnessy LJ, Smith LA, Evans J, Anderson D, Caldow G, Marion G, Low JC, Hutchings MR.  2013.  High prevalence of paratuberculosis in rabbits is associated with difficulties in controlling the disease in cattle. Veterinary Journal. 198:267-270.
Shi L, Shi TX, Broadley MR, White PJ, Long Y, Meng JL, Xu FS, Hammond JP.  2013.  High-throughput root phenotyping screens identify genetic loci associated with root architectural traits in Brassica napus under contrasting phosphate availabilities. Annals of Botany. 112:381-389.
Stam R, Jupe J, Howden AJM, Morris JA, Boevink PC, Hedley PE, Huitema E.  2013.  Identification and characterisation CRN effectors in Phytophthora capsici shows modularity and functional diversity. PLoS ONE. 8:e59517.
Oakey H, Shafiei R, Comadran J, Uzrek N, Cullis B, Gomez LD, Whitehead C, McQueen-Mason SJ, Waugh R, Halpin C.  2013.  Identification of crop cultivars with consistently high lignocellulosic sugar release requires the use of appropriate statistical design and modelling. Biotechnology for Biofuels. 6:185.
Monson R, Burr T, Carlton T, Liu H, Hedley P, Toth IK, Salmond GPC.  2013.  Identification of genes in the VirR regulon of Pectobacterium atrosepticum and characterization of their roles in quorum sensing-dependent virulence. Environmental Microbiology. 15:687-701.
Woodhead M, Williamson S, Smith K, McCallum S, Jennings N, Hackett CA, Graham J.  2013.  Identification of quantitative trait loci for cane splitting in red raspberry (Rubus idaeus). Molecular Breeding. 31:111-122.
Laird J, McInally C, Carr C, Doddiah S, Yates G, Chrysanthou E, Khattab A, Love AJ, Geri C, Sadanandom A et al..  2013.  Identification of the domains of Cauliflower mosaic virus protein P6 responsible for the suppression of RNA-silencing and salicylic acid-signaling. Journal of General Virology. 94:2777-2789.
Dincheva I, Badjakov I, Kondakova V, Dobson P, McDougall G, Stewart D.  2013.  Identification of the phenolic components in Bulgarian raspberry cultivars by LC-ESI-MSn. International Journal of Agricultural Science Research. 3:127-137.
Searle KR, Blackwell A, Falconer D, Sullivan M, Butler A, Purse BV.  2013.  Identifying environmental drivers of insect phenology across space and time: Culicoides in Scotland as a case study. Bulletin of Entomological Research. 103:155-170.
Seward AM, Beale CM, Gilbert L, Jones TH, Thomas RJ.  2013.  The impact of increased food availability on survival of a long-distance migratory bird. Ecology. 94:221-230.
Carsan S, Stroebel A, Dawson I, Kindt R, Swanepoel F, Jamnadass R.  2013.  Implications of shifts in coffee production on tree species richness, composition and structure on small farms around Mount Kenya. Biodiversity and Conservation. 22:2919-2936.
Naz I, Palomares-Rius JE, Saifullah, Blok V, Khan MR, Ali S, Ali S.  2013.  In vitro and in planta nematicidal activity of Fumaria parviflora (Fumariaceae) against the southern root-knot nematode Meloidogyne incognita. Plant Pathology. 62:943-952.
Wang Z, Grant RF, Arain MA, Bernier PY, Chen B, Chen JM, Govind A, Guindon L, Kurz WA, Peng C et al..  2013.  Incorporating weather sensitivity in inventory-based estimates of boreal forest productivity: a meta-analysis of process model results. Ecological Modelling. 260:25-35.
Imholt C, Soulsby C, Malcolm IA, Hrachowitz M, Gibbins CN, Langan SJ, Tetzlaff D.  2013.  Influence of scale on thermal characteristics in a large montane river basin. River Research Applications. 29:403-419.
Crossman J, Whitehead P, Futter MN, Jin L, Shahgedanova M, Castellazzi M, Wade AJ.  2013.  The interactive responses of water quality and hydrology to changes in multiple stressors, and implications for the long-term effective management of phosphorus. Science of the Total Environment. 454:230-244.
Cook BR, Atkinson M, Chalmers H, Comins L, Cooksley S, Deans N, Fazey I, Fenemor A, Kesby M, Litke S et al..  2013.  Interrogating participatory catchment organisations: cases from Canada, New Zealand, Scotland and the Scottish-English Borderlands. Geographical Journal. 179:234-247.
Gehlot HS, Tak N, Kaushik M, Mitra S, Chen WM, Poweleit N, Panwar D, Poonar N, Parihar R, Tak A et al..  2013.  An invasive Mimosa in India does not adopt the symbionts of its native relatives. Annals of Botany. 112:179-186.
Fazey I, Evely AC, Reed MR, Stringer LC, Kruijsen JHJ, White PCL, Newsham A, Jin L, Cortazzi M, Phillipson J et al..  2013.  Knowledge Exchange: a review and research agenda for environmental management. Environmental Conservation. 40:19-36.
Reed MS, Fazey I, Stringer LC, Raymond CM, Akhtar-Schuster M, Begni G, Bigas H, Brehm S, Briggs J, Bryce R et al..  2013.  Knowledge management for land degradation monitoring and assessment: an analysis of contemporary thinking. Land Degradation and Development. 24:307-322.
Mickovski SB, Buss K, McKenzie BM, Sokmener B.  2013.  Laboratory study on the potential use of recycled inert construction waste material in the substrate mix for extensive green roofs. Ecological Engineering. 61:706-714.
Ribeiro KM, Braga RA, Scalco MS, Horgan GW.  2013.  Leaf area estimation of medium size plants using optical metrology. Revista Brasileira de Engenharia Agricola e Ambiental. 17:595-601.
Schiffers K, Bourne EC, Lavergne S, Thuiller W, Travis JMJ.  2013.  Limited evolutionary rescue of locally adapted populations facing climate change. Philosophical Transactions of the Royal Society B. 368:e20120083.
Kapfer J, Birks HJB, Felde VA, Klanderud K, Martinessen T, Ross LC, Schei FH, Virtanen R, Grytnes JA.  2013.  Long-term vegetation stability in northern Europe as assessed by changes in species co-occurrences. Plant Ecology and Biodiversity. 6:289-302.
Cubitt MF, Hedley PE, Williamson NR, Morris JA, Campbell E, Toth IK, Salmond GPC.  2013.  A metabolic regulator modulates virulence and quorum sensing signal production in Pectobacterium atrosepticum. Molecular Plant Microbe Interactions. 26:356-366.
Roberts WM, Matthews RA, Blackwell MSA, Peukert S, Collins AL, Stutter MI, Haygarth PM.  2013.  Microbial biomass phosphorus contributions to phosphorus solubility in riparian vegetated buffer strip soils. Biology and Fertility of Soils. 49:1237-1241.
Dennis PG, Sparrow AD, Gregorich EG, Novis P, Elberling B, Greenfield LG, Hopkins DW.  2013.  Microbial responses to carbon and nitrogen supplementation in an Antarctic dry valley soil. Soil Biology and Biochemistry. 25:55-61.
Shaw RF, Pakeman RJ, Young MR, Iason GR.  2013.  Microsite affects willow sapling recovery from bank vole (Myodes glareolus) herbivory, but does not affect grazing risk. Annals of Botany. 112:731-739.
Smith SW, Robertson AHJ, Meharg AA, Pakeman RJ, Johnson D, Woodin SJ, van der Wal R.  2013.  Milling plant and soil material in plastic tubes over-estimates carbon and under-estimates nitrogen concentrations. Plant and Soil. 369:509-513.
Flynn KJ, Stoecker DK, Mitra A, Raven JA, Glibert PM, Hansen PJ, Graneli E, Burkholder JM.  2013.  Misuse of the phytoplanktonzooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types. Journal of Plankton Research. 35:3-11.
Schmidt S, Raven JA, Paungfoo-Lonhienne C.  2013.  The mixotrophic nature of photosynthetic plants. Functional Plant Biology. 40:425-438.
Armas C, Schoeb C, Gutierrez JR.  2013.  Modulating effects of ontogeny on the outcome of plant-plant interactions along stress gradients. New Phytologist. 200:7-9.
Yao HY, Campbell CD, Chapman SJ, Freitag TE, Nicol GW, Singh BK.  2013.  Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey. Environmental Microbiology. 15:2545-2556.
Tavares LR, Figueira I, McDougall GJ, Vieira HLA, Stewart D, Alves PM, Ferreira RB, Santos CN.  2013.  Neuroprotective effects of digested polyphenols from wild blackberry species. European Journal of Nutrition. 52:225-236.
Perry JN, Arpaia S, Bartsch D, Birch ANE, Devos Y, Gathmann A, Gennaro A, Kiss J, Messean A, Mestdagh S et al..  2013.  No evidence requiring change in the risk assessment of Inachis io larvae. Ecological Modelling. 268:103-122.
Lavorel S, Storkey J, Bardgett RD, de Bello F, Berg MP, LeRoux X, Moretti M, Mulder C, Pakeman RJ, Diaz S et al..  2013.  A novel framework for linking functional diversity of plants with other trophic levels for the quantification of ecosystem services. Journal of Vegetation Science. 24:942-948.
Macleod CJA, Humphreys MW, Whalley WR, Turner L, Binley A, Watts CW, Skot L, Joynes A, Hawkins S, King IP et al..  2013.  A novel grass hybrid to reduce flood generation in temperate regions. Nature Scientific Reports, 3, Article no.1683..
Sukganah A, Choong CY, Russell J, Neale D, Wickneswari R.  2013.  Nucleotide sequence analysis of two lignin genes in Acacia auriculiformis x Acacia mangium hybrid for enhancement of wood pulp quality. Tree Genetics and Genome. 9:1369-1381.
Fischer A, Sandstrom C, Delibes-Mateos M, Arroyo B, Tadie D, Randall D, Hailu F, Lowassa A, Mshua M, Kerezi V et al..  2013.  On the multifunctionality of hunting - an institutional analysis of eight cases from Europe and Africa. Journal of Environmental Planning and Management. 56:531-552.
Smith SW, Vandenberghe C, Johnson D, Pakeman RJ, van der Wal R, Woodin SJ.  2013.  Optimising carbon storage within a spatially heterogeneous upland grassland through sheep grazing management. Ecosystems. 17:418-429.
Arnold MFF, Haag AF, Capewell S, Boshoff HI, James EK, McDonald R, Mair I, Mitchell AM, Kerscher B, Mitchell TJ et al..  2013.  Partial complementation of Sinorhizobium meliloti bacA mutant phenotypes by the Mycobacterium tuberculosis BacA protein. Journal of Bacteriology. 195:389-398.
Chianini F, Siso S, Ricci E, Eaton SL, Finlayson J, Pang Y, Hamilton S, Steele P, Reid HW, Cantile C et al..  2013.  Pathogenesis of scrapie in ARQ/ARQ sheep after subcutaneous infection: Effect of lymphadenectomy and immune cell subset changes in relation to prion protein accumulation. Veterinary Immunology and Immunopathology. 152:348-358.
Suryawanshi KR, Bhatnagar YV, Redpath S, Mishra C.  2013.  People, predators and perceptions: patterns of livestock depredation by snow leopards and wolves. Journal of Applied Ecology. 50:550-560.
Hombach-Klonisch S, Danescu A, Begum F, Amezaga MR, Rhind SM, Sharpe RM, Evans NP, Bellingham M, Cotinot C, Mandon-Pepin B et al..  2013.  Peri-conceptional changes in maternal exposure to sewage sludge chemicals disturbs fetal thyroid gland development in sheep. Molecular and Cellular Endocrinology. 367:98-108.
Skelsey P, With KA, Garrett KA.  2013.  Pest and disease management: Why we shouldn't go against the grain. PLoS ONE. 8:e75892.
Canton GJ, Katzer F, Benavides-Silvan J, Maley SW, Palarea-Albaladejo J, Pang Y, Smith S, Bartley PM, Rocchi M, Innes EA et al..  2013.  Phenotypic characterisation of the cellular immune infiltrate in placentas of cattle following experimental inoculation with Neospora caninum in late gestation. Veterinary Research. 44
Jupe J, Stam R, Howden AJM, Morris JA, Zhang R, Hedley PE, Huitema E.  2013.  Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle. Genome Biology. 14:R63.
Sainz M, Perez-Rontome C, Ramos J, Mulet J, James E, Bhattacharjee U, Petrich J, Becana M.  2013.  Plant hemoglobins can be maintained in functional form by reduced flavins in the nuclei and confer differential tolerance to nitro-oxidative stress. The Plant Journal. 76:875-887.
Senapati N, Smith P, Wilson B, Yeluripati JB, Daniel H, Lockwood P, Ghosh S.  2013.  Projections of changes in grassland soil organic carbon under climate change are relatively insensitive to methods of model initialization. European Journal of Soil Science. 64:229-238.
Critchley CNR, Mitchell RJ, Rose RJ, Griffiths JB, Jackson E, Scott H, Davies OD.  2013.  Re-establishment of Calluna vulgaris (L.) Hull in an eight-year grazing experiment on upland acid grassland. Journal of Nature Conservation. 21:22-30.
Speed JDM, Austrheim G, Hester AJ, Solberg EJ, Tremblay JP.  2013.  Regional-scale alteration of clear-cut forest regeneration caused by moose browsing. Forest Ecology and Management. 289:289-299.
Hunter LJR, Westwood JH, Heath G, Macaulay K, Smith AG, MacFarlane SA, Palukaitis P, Carr JP.  2013.  Regulation of RNA-dependent RNA polymerase 1 and isochorismate synthase gene expression in arabidopsis. PLoS ONE. 8:e66530.
Coutinho BG, Mitter B, Talbi C, Sessitsch A, Bedmar E, Halliday N, James EK, Camara M, Venturi V.  2013.  Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. Applied and Environmental Microbiology. 79:4421-4432.
Kammer PM, Schoeb C, Eberhard G, Gallina R, Meyer R, Tschanz C.  2013.  The relationship between soil water storage capacity and plant species diversity in high alpine vegetation. Plant Ecology and Diversity. 6:457-466.
Brierley JL, Sullivan L, Hilton AJ, Wale SJ, Hilton AJ, Kielebrink DT, Lees AK.  2013.  Relationship between Spongospora subterranea f.sp. subterranea soil inoculum level, host resistance and powdery scab on potato tubers in the field. Plant Pathology. 62:413-420.
Gushchin VA, Andreev DE, Taliansky M, MacFarlane SA, Solovyev AG, Morozov SY.  2013.  Replacement of amino acid in the ORF6 protein of tobacco mosaic virus prevents the formation of a complex with eEF1A and the cooperative binding to nucleic acids in vitro. Proceedings of the Russian Academy of Sciences. 448:1-5.
Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, MacLean D, Cock PJ, Leggett RM, Bryan GJ et al..  2013.  Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. Plant Journal. 76:530-544.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2013.  The response of alpine Salix shrubs to long-term experimental browsing varies with elevation and herbivore density. Arctic Antarctic and Alpine Research. 45:584-593.
Deng WN, Iannetta PPM, Hallett PD, Toorop PE, Squire GR, Jeng DS.  2013.  The rheological properties of the seed coat mucilage of Capsella bursa-pastoris L. Medik. (shepherd's purse). Biorheology. 50:57-67.
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Smith P, Ashmore MR, Black HIJ, Burgess PJ, Evans CD, Quine TA, Thomson AM, Hicks K, Orr HG.  2013.  The role of ecosystems and their management in regulating climate, and soil, water and air quality. Journal of Applied Ecology. 50:812-829.
Smith HM, Wall G, Blackstock KL.  2013.  The role of map-based environmental information in supporting integration between river basin planning and spatial planning. Environmental Science and Policy. 30:81-89.
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Pasare SA, Ducreux LJM, Morris WL, Campbell R, Sharma SK, Roumeliotis E, Kohlen W, van der Krol S, Bramley PM, Roberts AG et al..  2013.  The role of the potato (Solanum tuberosum L.) CCD8 gene in stolon and tuber development. New Phytologist. 198:1108-1120.
Wang X, Richards J, Gross T, Druka A, Kleinhofs A, Steffenson B, Acevedo M, Brueggeman R.  2013.  The rpg4-mediated resistance to wheat stem rust (Puccinia graminis) in barley (Hordeum vulgare) requires Rpg5 gene, a second NBS-LRR gene, and an actin depolymerization factor. Molecular Plant-Microbe Interactions. 26:407-418.
Feliciano D, Hunter C, Slee RW, Smith P.  2013.  Selecting land-based mitigation practices to reduce GHG emissions from the rural land use sector: a case study of North East Scotland. Journal of Environmental Management. 120:93-104.
Juedtz K, Aberdein N, Stewart D, McDougall GJ.  2013.  Sequential extraction of black currant residues produce anthocyanin-rich extracts containing anthocyanin dimers. Journal of Berry Research. 3:53-64.
Foito A, Byrne SL, Hackett CA, Hancock RD, Stewart D, Barth S.  2013.  Short-term response in leaf metabolism of perennial ryegrass (Lolium perenne) to alterations in nitrogen supply. Metabolomics. 9:145-156.
Gushchin VA, Andreev DE, Taliansky ME, MacFarlane SE, Solovyev AG, Morozov SY.  2013.  Single amino acid substitution in the tobacco mosaic virus ORF6 protein suppresses formation of complex with eEF1A and cooperative nucleic acids binding in vitro. Doklady Biochemistry and Biophysics. 448:1-4.
Streitner C, Simpson CG, Shaw P, Danisman S, Brown JWS, Staiger D.  2013.  Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant Signalling and Behaviour. 8:e24638.
Paterson E, Sim A.  2013.  Soil-specific response functions of organic matter mineralization to the availability of labile carbon. Global Change Biology. 19:1562-1571.
Filatova T, Verburg PH, Parker DC, Stannard CA.  2013.  Spatial agent-based models for socio-ecological systems: challenges and prospects. Environmental Modelling and Software. 45:1-7.
Salmela MJ, Cavers S, Cottrell JE, Iason GR, Ennos RA.  2013.  Spring phenology shows genetic variation among and within populations in seedlings of Scots pine (Pinus sylvestris L.) in the Scotish Highlands. Plant Ecology and Diversity. 6:523-536.
Bragard C, Caciagli P, Lemaire O, Lopez-Moya JJ, MacFarlane S, Peters D, Susi P, Torrance L.  2013.  Status and prospects of plant virus control through interference with vector transmission. Annual Review of Phytopathology, 51,177-201.. 51:177-201.
Tondelli A, Xu X, Moragues M, Sharma R, Schnaithmann F, Ingvardsen C, Manninen O, Comadran J, Russell J, Waugh R et al..  2013.  Structural and temporal variation in genetic diversity of European spring two-row barley cultivars and association mapping of quantitative traits. Plant Genome. 6
Sargent F, Davidson FA, Kelly CL, Binny R, Christodoulides N, Gibson D, Johansson E, Kozyrska K, Lado LL, MacCallum J et al..  2013.  A synthetic system for expression of components of a bacterial microcompartment. Microbiology-SGM. 159:2427-2436.
Zheng Y, Byg A, Thorsen BJ, Strange N.  2013.  A temporal dimension of household vulnerability in three rural communities in Lijiang, China. Human Ecology. Published online.
Duc C, Sherstnev A, Cole C, Barton GJ, Simpson GG.  2013.  Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA. PLoS Genetics. 9:e1003867.
Mosher S, Seybold H, Rodriguez PA, Stahl M, Davies KA, Davaratne S, Morillo SA, Wierzba M, Favery B, Keller H et al..  2013.  The tyrosine-sulfated peptide receptors PSKR1 and PST1R modify the immunity of Arabidopsis to biotrophic and necrotrophic pathogens in an antagonistic manner. The Plant Journal. 73:469-482.
Kattas GD, Perez-Barberia FJ, Small M, Xu XK, Walker DM.  2013.  Unravelling complexity in inter-species interaction through nonlinear dynamical models. Acta Ethologica. 16:21-30.
Thuenemann EC, Lenzi P, Love AJ, Taliansky M, Becares M, Zuniga S, Enjuanes L, Zahmanova GG, Minkov IN, Matic S et al..  2013.  The use of transient expression systems for the rapid production of virus-like particles in plants. Current Pharmaceutical Design. 19:5564-5573.
Storkey J, Brooks D, Haughton A, Hawes C, Smith BM, Holland JM.  2013.  Using functional traits to quantify the value of plant communities to invertebrate ecosystem service providers in arable landscapes. Journal of Ecology. 101:38-46.
Pakeman RJ, Stockan J.  2013.  Using plant functional traits as a link between land use and bee foraging abundance. Acta Oecologia. 50:32-39.
Milne I, Stephen G, Bayer MM, Cock PJA, Pritchard L, Cardle L, Shaw P, Marshall DF.  2013.  Using Tablet for visual exploration of second generation sequencing data. Briefings in Bioinformatics. 14:193-202.
Schoeb C, Armas C, Guler M, Prieto I, Pugnaire FI.  2013.  Variability in functional traits mediates plant interactions along stress gradients. Journal of Ecology. 101:753-762.
Martin RR, MacFarlane S, Sabanadzovic S, Quito D, Poudel B, Tzanetakis IE.  2013.  Viruses and virus diseases of Rubus. Plant Disease. 97:168-182.
Koichi K, Cottrell A, Sangha KK, Gordon IJ.  2013.  What determines the acceptability of wildlife control methods? A case of feral pig management in the wet tropics world heritage area, Australia Human Dimensions of Wildlife. 18:97-108.
Skelsey P, With KA, Garrett KA.  2013.  Why dispersal should be maximised at intermediate scales of heterogeneity. Theoretical Ecology. 6:203-211.
Sing L, Towers W, Ellis J.  2013.  Woodland expansion in Scotland: an assessment of the opportunities and constraints using GIS. Scottish Forestry. 67
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Sutherland LA, Gabriel D, Hathaway-Jenkins L, Pascual U, Schmutz U, Rigby D, Godwin R, Sait S, Sakrabani R, Kunin B et al..  2012.  The 'neighbourhood effect': a multidisciplinary assessment of the case for farmer co-ordination in agri-environmental programmes. Land Use Policy. 29:502-512.
Cammarano D, Payero J, Basso B, Stefanova L, Grace P.  2012.  Adapting wheat sowing dates to projected climate change in the Australian sub-tropics: analysis of crop water use and yield. Crop and Pasture Science.
Spies A, Korzun V, Bayles R, Rajaraman J, Himmelback A, Hedley PE, Schweizer P.  2012.  Allele mining in barley genetic resources reveals genes of race-non-specific powdery mildew resistance. Frontiers in Plant Science. 2:113.
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol JW et al..  2012.  Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Research. 40:2454-2469.
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JWS.  2012.  Alternative splicing in plants - coming of age. Trends in Plant Science. 17:616-623.
James A, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JWS, Nimmo HG.  2012.  Alternative splicing mediates responses of the Arabidopsis thaliana circadian clock to temperature changes. The Plant Cell. 24:961-981.
Houston K, Druka A, Bonar N, Macaulay M, Lundqvist U, Franckowiak JD, Morgante M, Stein N, Waugh R.  2012.  Analysis of the barley bract suppression gene Trd1. Theoretical and Applied Genetics. 125:33-45.
Morenoa FC, Gordon IJ, Knox MR, Summer PM, Skerrat LF, Benvenutti MA, Saumell CA.  2012.  Anthelmintic efficacy of five tropical native Australian plants against Haemonchus contortus and Trichostrongylus colubriformis in experimentally infected goats (Capra hircus). Veterinary Parasitology. 187:237-243.
Bernaert N, De Paepe D, Bouten C, Declercq H, Stewart D, Van Bockstaele E, De Loose M, Van Droogenbroeck B.  2012.  Antioxidant capacity, total phenolic and ascorbate content as a function of the genetic diversity of leek (Allium ampeloprasum var. porrum). Food Chemistry. 134:669-677.
Troldborg M, Nowak W, Lange IV, Santos MC, Binning PJ, Bjerg PL.  2012.  Application of Bayesian geostatistics for evaluation of mass discharge uncertainty at contaminated sites. Water Resources Research. 48
Koichi K, Cottrell A, Sangha KK, Gordon IJ.  2012.  Are feral pigs (Sus scrofa) a pest to rainforest tourism? Journal of Ecotourism. 11:132-148.
Ascher J, Sartori G, Graefe U, Thornton B, Ceccherini MT, Pietramellara G, Egli M.  2012.  Are humus forms, mesofauna and microflora in subalpine forest soils sensitive to thermal conditions? Biology and Fertility of Soils. 48:709-725.
Kleyer M, Dray S, de Bello F, Leps J, Pakeman RJ, Strauss B, Thuiller W, Lavorel S.  2012.  Assessing species and community functional responses to environmental gradients: which multivariate methods? Journal of Vegetation Science. 23:805-821.
Boath AS, Grussu D, Stewart D, McDougall GJ.  2012.  Berry polyphenols inhibit digestive enzymes: a source of potential health benefits? Food Digestion. 3:1-7.
White PJ, Broadley MR, Hammond JP, Ramsay G, Subramanian NK, Thompson JA, Wright GM.  2012.  Bio-fortification of potato tubers using foliar zinc-fertiliser. Journal of Horticultural Science and Biotechnology. 87:123-129.
Dawson JJC, Adhikari YR, Soulsby C, Stutter MI.  2012.  The biogeochemical reactivity of suspended particulate matter at nested sites in the Dee basin, NE Scotland. Science of the Total Environment. 434:159-170.
Subbarao GV, Sahrawat KL, Nakahara K, Ishikawa T, Rao GP, Hash CT, George TS, Kishii M, Rao PS, Nardi P et al..  2012.  Biological nitrification inhibition (BNI) - a novel strategy to regulate nitrification in agricultural systems. Advances in Agronomy. 114:249-302.
Chen WM, Prell J, James EK, Sheu D, Sheu S.  2012.  Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica. Microbiology. 158:1758-1766.
Linder HP, Bykova O, Dyke J, Etienne RS, Hickler T, Kuehn I, Marion G, Ohlemueller R, Schymanski SJ, Singer A.  2012.  Biotic modifiers, environmental modulation and species distribution models. Journal of Biogeography. 39:2179-2190.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, James EK, Sprent JI, Young JPW, Chen WM.  2012.  Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
Love AJ, Geri C, Laird J, Carr C, Yun BW, Loake GJ, Tada Y, Sadanandom A, Milner JJ.  2012.  Cauliflower mosaic virus protein P6 inhibits signaling responses to salicylic acid and regulates innate immunity. PLoS One. 7:e47535.
Logie L, Harthill J, Patel K, Bacon S, Hamilton DL, Macrae K, McDougall GJ, Wang HH, Xue L, Jiang H et al..  2012.  Cellular responses to the metal-binding properties of metformin. Diabetes. 61:1423-1433.
Sonnenberg R, Bransby MF, Bengough AG, Hallett PD, Davies MCR.  2012.  Centrifuge modelling of soil slopes containing model plant roots. Canadian Geotechnical Journal. 49:1-17.
Brittain SR, Cox AG, Tomos AD, Paterson E, Siripinyanond A, McLeod CW.  2012.  Chemical speciation studies on DU contaminated soils using flow field flow fractionation linked to inductively coupled plasma mass spectrometry (FIFFF-ICP-MS). Journal of Environmental Monitoring. 14:782-790.
Toorop PE, Cuerva RC, Begg GS, Locardi B, Wishart J, Squire GR, Iannetta PPM.  2012.  Co-adaptation of seed dormancy and flowering time in the arable weed Capsella bursa-pastoris (shepherd's purse). Annals of Botany. 109:481-489.
Sutherland WJ, Bellingan L, Bellingham JR, Blackstock JJ, Bloomfield RM, Bravo M, Cadman VM, Cleevely DD, Clements A, Cohen AS et al..  2012.  A collaboratively-derived science-policy research agenda. PloS ONE. 7:e31824.
Fridley JD, Grime JP, Huston MA, Pierce S, Smart SM, Thompson K, Boerger L, Brooker RW, Cerabolini BEL, Gross N et al..  2012.  Comment on "Productivity Is a Poor Predictor of Plant Species Richness". Science. 335:1441.
Suarez-Moreno ZR, Caballero-Mellado J, Coutinho BG, Mendonca-Previato L, James EK, Venturi V.  2012.  Common features of environmental and potentially beneficial plant-associated Burkholderia. Microbial Ecology. 63:249-266.
Cognat C, Shepherd T, Verrall SR, Stewart D.  2012.  Comparison of two headspace sampling techniques for the analysis of off-flavour volatiles from oat based products. Food Chemistry. 134:1592-1600.
Langkilde S, Schroder M, Frank T, Shepherd LVT, Conner S, Davies HV, Meyer O, Danier J, Rychlik M, Belknap WR et al..  2012.  Compositional and toxicological analysis of a GM potato line with reduced alpha-solanine content - A 90-day feeding study in the Syrian Golden hamster. Food and Chemical Toxicology. 64:177-185.
Stien A, Ims RA, Albon SD, Fuglei E, Irvine RJ, Ropstad E, Halvorsen O, Langvatn R, Loe LE, Veiberg V et al..  2012.  Congruent responses to weather variability in high arctic herbivores. Biology Letters. 8:1002-1005.
Deffuant G, Alvarez I, Barreteau O, de Vries B, Edmonds B, Gilbert N, Gotts N, Jabot F, Janssen S, Hilden M et al..  2012.  Data and models for exploring sustainability of human well-being in global environmental change. European Physical Journal Special Topics.. 214:519-545.
Palarea-Albaladejo J, Antoni Martin-Fernandez J, Soto JA.  2012.  Dealing with distances and transformations for fuzzy c-means clustering of compositional data. Journal of Classification. 29:144-169.
Sorin R, Gordon IJ.  2012.  Developing a methodology to assess children's perceptions of the tropical environment. International Education Studies, 6. 96-109.. 6:96-109.
Pilot M, Jedrzejewski W, Sidorovich VE, Meier-Augenstein W, Kemp HF, Hoelzel AR.  2012.  Dietary differentiation and the evolution of population genetic structure in a highly mobile carnivore. PLoS ONE. 7:e39341.
Gromov AV, Gray N, Szilagyi PA, Campbell EEB.  2012.  Direct grafting of carbon nanotubes with ethylenediamine. Journal of Materials Chemistry. 22:21242-21248.
Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG.  2012.  Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation. Nature Structural and Molecular Biology. 19:845-852.
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Carlsson AM, Irvine RJ, Wilson K, Piertney SB, Halvorsen O, Coulson SJ, Stien A, Albon SD.  2012.  Disease transmission in an extreme environment: Nematode parasites infect reindeer during the Arctic winter. International Journal for Parasitology. 42:789-795.
Phosri C, Polme S, Taylor AFS, Koljalg U, Suwannasai N, Tedersoo L.  2012.  Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand. Biodiversity and Conservation, 21, 2287-2298..
Pakeman RJ, Small JL, Torvell L.  2012.  Edaphic factors influence the longevity of seeds in the soil. Plant Ecology. 213:57-65.
Lees AK, Stewart JA, Lynott JS, Carnegie SF, Campbell H, Roberts AMI.  2012.  The effect of a dominant Phytopthora infestans genotype (13_A2) in Great Britain on host resistance to foliar late blight in commercial potato cultivars. Potato Research. 55:125-134.
Thies F, Masson LF, Rudd A, Vaughan N, Tsang C, Brittenden J, Simpson WG, Duthie S, Horgan GW, Duthie G.  2012.  Effect of a tomato-rich diet on markers of cardiovascular disease risk in moderately overweight, disease-free, middle-aged adults: a randomized controlled trial. American Journal of Clinical Nutrition. 95:1013-1022.
Chen W, Prell J, James EK, Sheu D, Sheu S.  2012.  Effect of phosphoglycerate mutase and fructose 1,6-bisphosphatase deficiency on free-living and symbiotic Burkholderia phymatum. Microbiology-SGM. 158:1127-1136.
Bellingham M, Fiandanese N, Byers A, Cotinot C, Evans NP, Pocar P, Amezaga MR, Lea RG, Sinclair KD, Rhind SM et al..  2012.  Effects of exposure to environmental chemicals during pregnancy on the development of the male and female reproductive axes. Reproduction in Domestic Animals. 47:15-22.
Pocar P, Fiandanese N, Secchi C, Berrini A, Fischer B, Schmidt JS, Schaedlich K, Rhind SM, Zhang Z, Borromeo V.  2012.  Effects of polychlorinated biphenyls in CD-1 mice: reproductive toxicity and intergenerational transmission. Toxicological Sciences. 126:213-226.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.